Citrus Sinensis ID: 011930


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MAQIRMNRRSLAAAVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccHHHHEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
MAQIRMNRRSLAAAVAVWMVFLGLIMMEKLSNAErllkdkdpqvfadeketrpgfLCRVAHFLwqsgessyepvwpfgWKVVVGSIVGFFGAAlgsvggvggggifVPMLTLiigfdpksaTAISKCMIMGAAGSTVYYNLrlrhptldmpliDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESeskaadvdgqdykqlpsgpstvhdeevpiiKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGtrviaskgkeitnwKIHQIVFYCFCGIVAGMVGGllglgggfilgplflelgippqvasatstfaMTFSSSMSVVQYYLldrfpvpyaAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS
MAQIRMNRRSLAAAVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLEseskaadvdgqdykqlpsgpstvhdeevPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS
MAQIRMNRRSLAAAVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIvgffgaalgsvggvggggifvPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDtwkketmmkkeaakVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVggllglgggfilgplflelgipPQvasatstfamtfsssmsvvQYYLLDRFPVPYaafftlvatfaafaGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS
**********LAAAVAVWMVFLGLIMMEKLSNAERLL******VFA***ETRPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK***************************************EVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLC***
*********SLAAAVAVWMVFLGLIMMEKLSNAERL*******************LCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWK**********************************************NIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQ**
*********SLAAAVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS
***IRMNRRSLAAAVAVWMVFLGLIMMEKLSNAERLLKDK***********RPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAA*****************************EEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQ*S
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQIRMNRRSLAAAVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRVAHFLWQSGESSYEPVWPFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
224134334477 predicted protein [Populus trichocarpa] 0.997 0.991 0.776 0.0
255561190478 conserved hypothetical protein [Ricinus 0.993 0.985 0.775 0.0
224094753454 predicted protein [Populus trichocarpa] 0.951 0.993 0.784 0.0
356496755470 PREDICTED: uncharacterized protein LOC10 0.978 0.987 0.737 0.0
297735172481 unnamed protein product [Vitis vinifera] 0.993 0.979 0.751 0.0
225430784476 PREDICTED: uncharacterized protein LOC10 0.985 0.981 0.748 0.0
217073872474 unknown [Medicago truncatula] 0.932 0.932 0.730 1e-180
356518101491 PREDICTED: uncharacterized protein LOC10 0.991 0.957 0.707 1e-179
356509743474 PREDICTED: uncharacterized protein LOC10 0.991 0.991 0.710 1e-179
357483379470 Membrane protein-like protein [Medicago 0.972 0.980 0.743 1e-176
>gi|224134334|ref|XP_002327812.1| predicted protein [Populus trichocarpa] gi|222836897|gb|EEE75290.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/478 (77%), Positives = 423/478 (88%), Gaps = 5/478 (1%)

Query: 1   MAQIRMNRRSLAA-AVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRV 59
           MA+I++N+R+LA  AV   ++FL  ++M  +++AERLLKDK+P+  A EKE  PG++ +V
Sbjct: 1   MAKIKLNQRALATTAVLTCLIFLVQVLMTNMASAERLLKDKEPEASA-EKEMSPGYIVKV 59

Query: 60  AHFLWQSGESSYEPVWP---FGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGF 116
            HFL+Q G+SSYEPVWP   F W++VVG+IVGF GAALGSVGGVGGGGIFVPMLTLIIGF
Sbjct: 60  LHFLFQGGKSSYEPVWPDMKFDWRIVVGTIVGFLGAALGSVGGVGGGGIFVPMLTLIIGF 119

Query: 117 DPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFN 176
           DPKS+TAISKCMIMGAAG+TVYYNLRLRHPTLDMPLIDYDL LLFQPMLMLGISIGV+F+
Sbjct: 120 DPKSSTAISKCMIMGAAGATVYYNLRLRHPTLDMPLIDYDLTLLFQPMLMLGISIGVSFS 179

Query: 177 VMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYK 236
           VMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMM+K+AAK LESESK  D   +DYK
Sbjct: 180 VMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMRKDAAKQLESESKPEDGAEEDYK 239

Query: 237 QLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQV 296
            LPSGP  + D+EVP+ +NIYWKE++LL YVW GFL VQ+ + Y   CS+TYWILN+LQV
Sbjct: 240 PLPSGPVVLPDDEVPLRENIYWKEVALLFYVWAGFLVVQIVQTYFPTCSVTYWILNSLQV 299

Query: 297 PIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFI 356
           PIA SV LFEAICL KGTRVIASKGKEITNWK+HQI+ YC CGI+AGMVGGLLGLGGGFI
Sbjct: 300 PIAASVTLFEAICLCKGTRVIASKGKEITNWKLHQILLYCSCGIIAGMVGGLLGLGGGFI 359

Query: 357 LGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQ 416
           LGPLFLELGIPPQVASATSTFAM FSSSMSVV+YYLL+RFPVPYAA+F LVAT +AF GQ
Sbjct: 360 LGPLFLELGIPPQVASATSTFAMAFSSSMSVVEYYLLNRFPVPYAAYFALVATISAFVGQ 419

Query: 417 HVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLCQIS 474
           HVVRKIIA LGRAS+I+FILALTIFVSA+SLGG GI NMV+KL+N+EYMGFENLCQ S
Sbjct: 420 HVVRKIIAFLGRASLIIFILALTIFVSAVSLGGVGIANMVEKLENEEYMGFENLCQQS 477




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561190|ref|XP_002521607.1| conserved hypothetical protein [Ricinus communis] gi|223539285|gb|EEF40878.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224094753|ref|XP_002310222.1| predicted protein [Populus trichocarpa] gi|222853125|gb|EEE90672.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496755|ref|XP_003517231.1| PREDICTED: uncharacterized protein LOC100801441 [Glycine max] Back     alignment and taxonomy information
>gi|297735172|emb|CBI17534.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430784|ref|XP_002267318.1| PREDICTED: uncharacterized protein LOC100253061 [Vitis vinifera] Back     alignment and taxonomy information
>gi|217073872|gb|ACJ85296.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518101|ref|XP_003527721.1| PREDICTED: uncharacterized protein LOC100789748 [Glycine max] gi|83853827|gb|ABC47859.1| membrane protein-like protein [Glycine max] Back     alignment and taxonomy information
>gi|356509743|ref|XP_003523605.1| PREDICTED: uncharacterized protein LOC100816633 [Glycine max] Back     alignment and taxonomy information
>gi|357483379|ref|XP_003611976.1| Membrane protein-like protein [Medicago truncatula] gi|358344383|ref|XP_003636269.1| Membrane protein-like protein [Medicago truncatula] gi|355502204|gb|AES83407.1| Membrane protein-like protein [Medicago truncatula] gi|355513311|gb|AES94934.1| Membrane protein-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:504956017476 AT2G25737 [Arabidopsis thalian 0.978 0.974 0.463 3.9e-108
TAIR|locus:2040605459 AT2G36630 [Arabidopsis thalian 0.858 0.886 0.370 9.9e-71
TAIR|locus:2200061367 AT1G11540 "AT1G11540" [Arabido 0.736 0.950 0.260 3.5e-27
TAIR|locus:2195773458 AT1G61740 [Arabidopsis thalian 0.405 0.419 0.293 4.4e-24
TAIR|locus:2127343449 AT4G21250 "AT4G21250" [Arabido 0.736 0.777 0.242 3.4e-20
TAIR|locus:2127348393 AT4G21260 "AT4G21260" [Arabido 0.177 0.213 0.382 4.4e-14
DICTYBASE|DDB_G0269644549 DDB_G0269644 [Dictyostelium di 0.206 0.178 0.377 4.9e-14
TAIR|locus:504956017 AT2G25737 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
 Identities = 223/481 (46%), Positives = 293/481 (60%)

Query:     1 MAQIRMNRRSLAAAVAVWMVFLGLIMMEKLSNAERLLKDKDPQVFADE-KETRPGFLCRV 59
             M ++R     L + V ++++   L       +AER  + K  ++  DE +E    F  + 
Sbjct:     1 MTKLRSKWLGLRS-VTIFLINFSLAFA--FVSAER--RGKSLRLSTDETRENESSFFLKA 55

Query:    60 AHFLWQSGESSYEPVWP---FGWKVVVGSIXXXXXXXXXXXXXXXXXXXXXPMLTLIIGF 116
              +FLW+S +  Y  VWP   F W++V+G++                     PML+LIIGF
Sbjct:    56 INFLWESDQIGYRHVWPEFEFNWQIVLGTLVGFFGAAFGSVGGVGGGGIFVPMLSLIIGF 115

Query:   117 DPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFN 176
             DPKSATAISKCMIMGA+ STVYYNLRLRHPTLDMP+IDYDLALL QPMLMLGISIGVAFN
Sbjct:   116 DPKSATAISKCMIMGASVSTVYYNLRLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFN 175

Query:   177 VMFADWMVTVLLIILFIGTSTKALFKGIDXXXXXXXXXXXXXXVLESES-KAADVDGQDY 235
             V+F DW+VTVLLI+LF+GTSTKA  KG +               LES      +V+   Y
Sbjct:   176 VIFPDWLVTVLLIVLFLGTSTKAFLKGSETWNKETIEKKEAAKRLESNGVSGTEVE---Y 232

Query:   236 KQLPSGPST----VHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWIL 291
               LP+ PST       EEV II+N+YWKEL LL++VW+ FLA+Q++K+ +  CS+ YW++
Sbjct:   233 VPLPAAPSTNPGNKKKEEVSIIENVYWKELGLLVFVWIVFLALQISKQNLANCSVAYWVI 292

Query:   292 NALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVXXXXXX 351
             N LQ+P+AV V+ +EA+ LY+G R+IASKG+  +N+ + Q+V YC  GI+AG+V      
Sbjct:   293 NLLQIPVAVGVSGYEAVALYQGRRIIASKGQGDSNFTVGQLVMYCTFGIIAGIVGGLLGL 352

Query:   352 XXXXXXXXXXXXXXXXPQXXXXXXXXXXXXXXXXXXXQYYLLDRFPVPYXXXXXXXXXXX 411
                             PQ                   +YYLL RFPVPY           
Sbjct:   353 GGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYLVGVATIA 412

Query:   412 XXXGQHVVRKIIAVLGRASIIVFILALTIFVSAISLGGFGIENMVKKLKNQEYMGFENLC 471
                GQHVVR++IA +GRAS+I+FILA  IF+SAISLGG GI NM+ K++  EYMGFENLC
Sbjct:   413 AWVGQHVVRRLIAAIGRASLIIFILASMIFISAISLGGVGIVNMIGKIQRHEYMGFENLC 472

Query:   472 Q 472
             +
Sbjct:   473 K 473




GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2040605 AT2G36630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200061 AT1G11540 "AT1G11540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195773 AT1G61740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127343 AT4G21250 "AT4G21250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127348 AT4G21260 "AT4G21260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269644 DDB_G0269644 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00570191
hypothetical protein (477 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
pfam01925236 pfam01925, TauE, Sulfite exporter TauE/SafE 4e-11
pfam01925236 pfam01925, TauE, Sulfite exporter TauE/SafE 2e-09
COG0730 258 COG0730, COG0730, Predicted permeases [General fun 5e-09
COG0730258 COG0730, COG0730, Predicted permeases [General fun 2e-07
pfam01925236 pfam01925, TauE, Sulfite exporter TauE/SafE 4e-07
COG0730258 COG0730, COG0730, Predicted permeases [General fun 2e-05
pfam01925236 pfam01925, TauE, Sulfite exporter TauE/SafE 6e-04
COG0730258 COG0730, COG0730, Predicted permeases [General fun 0.001
>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE Back     alignment and domain information
 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 27/108 (25%), Positives = 42/108 (38%)

Query: 335 YCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLD 394
               G++AG + GL G GGG I  PL L L  PP VA  TS  A+  +S    + +    
Sbjct: 1   LLLAGLLAGFLAGLAGFGGGLIAVPLLLLLLGPPHVAVGTSLLAVIATSLSGALAHRRRG 60

Query: 395 RFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFV 442
                      L     A  G  ++  +   + +    V +L   + +
Sbjct: 61  NVDWRLLLRLLLGGLLGALLGALLLLLLPGAVLKLLFGVLLLLAALLM 108


This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81. Length = 236

>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE Back     alignment and domain information
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE Back     alignment and domain information
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE Back     alignment and domain information
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
PRK10621266 hypothetical protein; Provisional 99.96
COG0730258 Predicted permeases [General function prediction o 99.95
PF01925240 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002 99.94
PRK10621 266 hypothetical protein; Provisional 99.3
COG0730 258 Predicted permeases [General function prediction o 99.24
PF01925240 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002 98.99
PF04018257 DUF368: Domain of unknown function (DUF368); Inter 94.05
>PRK10621 hypothetical protein; Provisional Back     alignment and domain information
Probab=99.96  E-value=1.7e-26  Score=229.49  Aligned_cols=236  Identities=20%  Similarity=0.216  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHHHHhhcccccchhchHHHHHHhhCCChhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHH
Q 011930           82 VVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCMIMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLF  161 (474)
Q Consensus        82 i~g~iiG~lag~l~~v~GiGGG~i~vP~L~ll~g~~~~~Ava~S~~~i~~~s~~~~~~~~~~~~~~~~~p~id~~l~l~l  161 (474)
                      +..+++|+++|++++..| |||.+.+|+|.. +++||++|+++|.+.++.+++++.+.|.+++|       +||+...++
T Consensus        13 ~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~~l   83 (266)
T PRK10621         13 GVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQKLN   83 (266)
T ss_pred             HHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHH
Confidence            455667888888888889 999999999974 79999999999999999999999998888888       999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcccccccCcCCCCCCCC
Q 011930          162 QPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKAADVDGQDYKQLPSG  241 (474)
Q Consensus       162 ~~~~ilG~~lGa~l~~~lp~~~l~~ll~i~ll~~~~~~l~~~~~~~k~e~~~kk~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (474)
                      .+++++|+.+|+++..++|++.++.+++++++..+.+++.+    ++++   ++                +. .      
T Consensus        84 ~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~----~~~~---~~----------------~~-~------  133 (266)
T PRK10621         84 IAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM----PKLG---EE----------------DR-Q------  133 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC----Cccc---cc----------------cc-c------
Confidence            99999999999999999999999999998888877666533    0100   00                00 0      


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHhhhhhhHHHHHHHHHHHHHhhccccccccc
Q 011930          242 PSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEAICLYKGTRVIASKG  321 (474)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~i~~~~~~~cs~~yw~~~~l~~~i~~~v~~~~~~~~~~~~~~~~~~~  321 (474)
                            ++        ++                                                              
T Consensus       134 ------~~--------~~--------------------------------------------------------------  137 (266)
T PRK10621        134 ------RR--------LY--------------------------------------------------------------  137 (266)
T ss_pred             ------cc--------cc--------------------------------------------------------------
Confidence                  00        00                                                              


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhH
Q 011930          322 KEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPY  400 (474)
Q Consensus       322 ~~~~~~~~~~~~~~~~~G~laG~vsGllGiGGG~ilvP~Ll-~~gl~~~~A~ATs~~~~~~ss~~s~~~~~~~G~i~~~~  400 (474)
                        .       .......|+++|+++|++|+|+|.+.+|.++ .++.|++++++|+.+..+.++..+...|...|.+||..
T Consensus       138 --~-------~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~  208 (266)
T PRK10621        138 --G-------LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWAT  208 (266)
T ss_pred             --c-------hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHH
Confidence              0       0012457899999999999999999998775 67999999999999998999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011930          401 AAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIF  441 (474)
Q Consensus       401 ~l~l~~gaiiGa~iG~~l~~~l~~~~~r~~lii~Il~~~i~  441 (474)
                      ++.+.+++++|+++|+++.+|++++.+|+.+..+++...+-
T Consensus       209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~  249 (266)
T PRK10621        209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAK  249 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888876654433



>COG0730 Predicted permeases [General function prediction only] Back     alignment and domain information
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised Back     alignment and domain information
>PRK10621 hypothetical protein; Provisional Back     alignment and domain information
>COG0730 Predicted permeases [General function prediction only] Back     alignment and domain information
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised Back     alignment and domain information
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 63/452 (13%), Positives = 119/452 (26%), Gaps = 160/452 (35%)

Query: 24  LIMMEKLSNAERLLKDKDPQVFADEKETRPGFLCRVAHFLWQSGESSYEPVW-------- 75
           ++    +   +RL  D   QVFA    +R                   +P          
Sbjct: 107 MMTRMYIEQRDRLYND--NQVFAKYNVSRL------------------QPYLKLRQALLE 146

Query: 76  --PFGWKVVVGSIVGFFGAALGSVGGVGGGGIFVPMLTLIIGFDPKSATAISKCM---IM 130
             P    ++ G            V G G                 K+  A+  C+   + 
Sbjct: 147 LRPAKNVLIDG------------VLGSG-----------------KTWVALDVCLSYKVQ 177

Query: 131 GAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMF-ADWMVTVLLI 189
                 +++ L L++      +++    LL+Q           + N+      +   L  
Sbjct: 178 CKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 190 ILFIGTSTKALFKGI--DTWKKETMMKKEA----AKVL---ESESKAADVDGQDYKQLPS 240
           +L        L   +  +    +      A     K+L     +     +       +  
Sbjct: 237 LLKSKPYENCLL--VLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 241 G--PSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQV-P 297
                T+  +EV           SLLL  +L      L +E              L   P
Sbjct: 292 DHHSMTLTPDEV----------KSLLL-KYLDCRPQDLPRE-------------VLTTNP 327

Query: 298 IAVSV---ALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGG 354
             +S+   ++ + +  +          K +   K+  I+                     
Sbjct: 328 RRLSIIAESIRDGLATWDNW-------KHVNCDKLTTIIESSLN---------------- 364

Query: 355 FILGP-----LFLELG-------IPPQVASATSTF--AMTFSSSMSVVQ----YYLLDRF 396
            +L P     +F  L        IP  +    S     +  S  M VV     Y L+++ 
Sbjct: 365 -VLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 397 PVP-----YAAFFTLVATFAAFAGQHVVRKII 423
           P        + +  L          H  R I+
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALH--RSIV 450


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00