Citrus Sinensis ID: 011931
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 474 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | yes | no | 0.989 | 0.965 | 0.863 | 0.0 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.981 | 0.962 | 0.864 | 0.0 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | yes | no | 0.981 | 0.968 | 0.846 | 0.0 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.993 | 0.967 | 0.731 | 0.0 | |
| Q9SH69 | 487 | 6-phosphogluconate dehydr | no | no | 0.991 | 0.965 | 0.726 | 0.0 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.978 | 0.864 | 0.729 | 0.0 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | no | no | 0.978 | 0.913 | 0.683 | 0.0 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.959 | 0.966 | 0.565 | 1e-147 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.959 | 0.970 | 0.539 | 1e-141 | |
| P52208 | 482 | 6-phosphogluconate dehydr | N/A | no | 0.957 | 0.941 | 0.548 | 1e-138 |
| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/483 (86%), Positives = 454/483 (93%), Gaps = 14/483 (2%)
Query: 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPE 65
Q TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG+LPL+GF DPE
Sbjct: 4 QPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPE 63
Query: 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
SFV SIQKPRVIIMLVKAG+PVD+TIKTLSAY+EKGDCI+DGGNEWYENTERREKA+AE
Sbjct: 64 SFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAEN 123
Query: 126 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGS 185
G LYLGMGVSGGEEGAR+GPS+MPGGS+EAYK IEDI+LKVAAQV DSGPCVTY+ KGGS
Sbjct: 124 GFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGS 183
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245
GNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL +VF++WNKGEL SFL+EITADI
Sbjct: 184 GNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADI 243
Query: 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE-------------ERV 292
FGIKDDKGDG+LVDKVLDKTGMKGTGKWTVQQAA+LSV APTIE ERV
Sbjct: 244 FGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERV 303
Query: 293 EAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 351
+AAKVFK+GGFG + ++Q VDK++L+DDVR+ALYASKICSYAQGMNLIRAKSIEKGW LK
Sbjct: 304 QAAKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 352 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 411
LGELARIWKGGCIIRA+FLDRIK+AYDRNA+LANLLVDPEFAKEI++RQSAWRRVVCLAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 412 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 471
NSGISTPGMS+SLAYFDSYRRERLPANLVQAQRDYFGAHTYER D+EGSFHTEWFKIA+Q
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQ 483
Query: 472 SKI 474
SKI
Sbjct: 484 SKI 486
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/481 (86%), Positives = 447/481 (92%), Gaps = 16/481 (3%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LPL+GF DPESF
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
VNSIQKPRVIIMLVKAGAPVD TIKTLSAY+EKGDCIIDGGNEWYENTERREKAM E GL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDATIKTLSAYLEKGDCIIDGGNEWYENTERREKAMEEKGL 124
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPS+MPGGSF+AYK IEDIL KVAAQV DSGPCVTY+ KGGSGN
Sbjct: 125 LYLGMGVSGGEEGARNGPSMMPGGSFDAYKNIEDILTKVAAQV-DSGPCVTYIGKGGSGN 183
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEEL+ VF EWN+GELLSFLIEITADIFG
Sbjct: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELKEVFAEWNRGELLSFLIEITADIFG 243
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
IKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTI +ERVEA
Sbjct: 244 IKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDSRFLSGLKDERVEA 303
Query: 295 AKVFKSGGF-GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 353
AKVFK+GG S+Q VDK+KLIDDVRQALYA+KICSYAQGMNLIRAKS+EK WDLKLG
Sbjct: 304 AKVFKAGGVEDTLSDQVVDKKKLIDDVRQALYAAKICSYAQGMNLIRAKSVEKEWDLKLG 363
Query: 354 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 413
ELARIWKGGCIIRA+FLDRIKKAYDRN +L+NLL+DPEF+KE+++RQSAWRRVVCLAI +
Sbjct: 364 ELARIWKGGCIIRAMFLDRIKKAYDRNPNLSNLLIDPEFSKEMIERQSAWRRVVCLAIGA 423
Query: 414 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 473
GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERID+ G+FHTEWFK+AK SK
Sbjct: 424 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDIPGAFHTEWFKLAK-SK 482
Query: 474 I 474
I
Sbjct: 483 I 483
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/481 (84%), Positives = 445/481 (92%), Gaps = 16/481 (3%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
+TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EG+LP++GF DP S
Sbjct: 3 VTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPAS 62
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FVNSIQKPRV+IMLVKAGAPVD+TI TL+A++E+GDCIIDGGNEWYENTERREKAM E G
Sbjct: 63 FVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERG 122
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGAR+GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 123 LLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 182
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLI+EAYDVLKSVGKLTN ELQ VF+EWNKGELLSFLIEITADIF
Sbjct: 183 NFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADIF 242
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE-------------ERVE 293
IKDD+G G+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTIE ERVE
Sbjct: 243 SIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERVE 302
Query: 294 AAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 353
AAKVF+ G F SN VDK +LI+DVRQALYASKICSYAQGMN+I+AKS+EKGW L LG
Sbjct: 303 AAKVFQ-GDF--SSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLG 359
Query: 354 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 413
ELARIWKGGCIIRA+FLDRIKKAYDRN+DLANLLVDPEFA+EI+DRQ+AWRRVVCLAIN+
Sbjct: 360 ELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINN 419
Query: 414 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 473
G+STPGMS+SLAYFDSYRR+RLPANLVQAQRDYFGAHTYER+DM GSFHTEWFKIA+ +K
Sbjct: 420 GVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAK 479
Query: 474 I 474
+
Sbjct: 480 M 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/488 (73%), Positives = 412/488 (84%), Gaps = 17/488 (3%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET++RA EG LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI LS YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF AY ++DIL KVAAQV D GPCVTY+
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+N+EL +FTEWN+GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEI 239
Query: 242 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------- 288
T+DIF +KDD GDG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI
Sbjct: 240 TSDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 289 EERVEAAKVFKSGGFGV---QSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 345
+ER AAKV + G +++ VDK++LIDDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 346 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 405
KGWDL LGE+ARIWKGGCIIRAVFLDRIKKAY RN +LA+L+VDP+FAKE+V RQ+AWRR
Sbjct: 360 KGWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRR 419
Query: 406 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
VV LAI++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 466 FKIAKQSK 473
K+A++S+
Sbjct: 480 TKLARKSQ 487
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/487 (72%), Positives = 409/487 (83%), Gaps = 17/487 (3%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET++RA EG+LP+ G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI S YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY I+DIL KVAAQV D GPCVTY+
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +FTEWN GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEI 239
Query: 242 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------- 288
T+DIF +KD+ GDG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI
Sbjct: 240 TSDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 289 EERVEAAKVFKSGGFGVQ---SNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 345
+ER AAKV + G + ++ +DK++L+DDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 346 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 405
K W+L GELARIWKGGCIIRAVFLDRIKKAY RN DLA+L+VDPEFAKE+V RQ+AWRR
Sbjct: 360 KSWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRR 419
Query: 406 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
VV LA+++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 466 FKIAKQS 472
K+A+++
Sbjct: 480 TKLARKN 486
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/481 (72%), Positives = 403/481 (83%), Gaps = 17/481 (3%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++IGL GLAVMGQNLALNIAEKGFPISVYNRT SKVDET++RAK EGDLPL G P F
Sbjct: 49 SQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPRDF 108
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V SI++PR I++LVKAG+PVD+TI +L+++ME GD IIDGGNEWY+NTERR GL
Sbjct: 109 VLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSNGL 168
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR GPSLMPGG F+AY I+ IL KVAAQV D GPCVTY+ +GGSGN
Sbjct: 169 LYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQV-DDGPCVTYIGEGGSGN 227
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +F EWNK EL SFL+EITADIF
Sbjct: 228 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIFK 287
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
+KDD DG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI EER A
Sbjct: 288 VKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENA 347
Query: 295 AKVFKSGGFGVQSNQ---AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 351
AK+ ++ G + N VDK++LIDDVRQALYASKICSYAQGMNL+RAKS E GWDL
Sbjct: 348 AKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDLN 407
Query: 352 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 411
LGELARIWKGGCIIRAVFLD IK+AY RN +LA+L+VDPEFAKE+V RQ+AWRRVV LA+
Sbjct: 408 LGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLAV 467
Query: 412 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 471
++GISTPGM +SLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D+ GS+HTEW K+A++
Sbjct: 468 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARK 527
Query: 472 S 472
S
Sbjct: 528 S 528
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/483 (68%), Positives = 384/483 (79%), Gaps = 19/483 (3%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
RIGLAGLA MGQNLALNIAEKGFPISVYNRT +KVD TV RA+ EG LP+ G RDP FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S+ +PR +++LV+AG VD TI L Y++ GD I+DGGNEWY+NTERR + A G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
YLGMGVSGGEEGAR+GPSLMPGG +AY I DIL K AAQ D G CVT+V GG+GNF
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTED-GACVTFVGPGGAGNF 201
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGI 248
VKM+HNGIEYGDMQLIAEAYDVL+ VG L+N E+ +VF EWN+GEL SFL+EITADIF +
Sbjct: 202 VKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTV 261
Query: 249 KDD---KGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERV 292
D G G LVDK+LDKTGMKGTGKWTVQQAA+L++AAPTI +ERV
Sbjct: 262 ADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERV 321
Query: 293 EAAKVFKSGGF--GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 350
AA V ++ G G+ VDK+ L+D VRQALYASKICSYAQGMNL+RAKS+EKGW+L
Sbjct: 322 AAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 351 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 410
L ELARIWKGGCIIRA FLDRIKKAYDRN +LANL+VD EFA+E+V RQ+AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 411 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAK 470
+ +GISTPGMS+SL+YFD+YR RLPANL+QAQRD FGAHTYERID GSFHTEW K+A+
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLAR 501
Query: 471 QSK 473
+S
Sbjct: 502 KSN 504
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/474 (56%), Positives = 330/474 (69%), Gaps = 19/474 (4%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPE 65
L + GL GLAVMG+NLALNI GF ++VYNRT K + +RA+ + +P + D
Sbjct: 3 LQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED-- 60
Query: 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
FV S+++PR I+++VKAG PVD ++ L ++ GD IIDGGN + +TERR K + L
Sbjct: 61 -FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEAL 119
Query: 126 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGS 185
GL ++GMGVSGGEEGA +GPSLMPGG+ AY+ +E I+ +AAQV D GPCVTY+ GGS
Sbjct: 120 GLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQV-DDGPCVTYIGPGGS 178
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG-ELLSFLIEITAD 244
G++VKM+HNGIEYGDMQLIAEAYD+LKSV L EL +VF WNK EL SFLIEITAD
Sbjct: 179 GHYVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITAD 238
Query: 245 IFGIKDDKGDGY-LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGF 303
IF DD G G LV+ +LD G KGTG+WTV+ A ++ VA PTI V A ++ S
Sbjct: 239 IFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNA-RILSSIKA 297
Query: 304 GVQSNQAV-----------DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 352
Q+ + D+Q ID VR ALY SKICSYAQGM L+ S + L L
Sbjct: 298 ERQAASEILSGPITEPFSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGLNL 357
Query: 353 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 412
GELARIWKGGCIIRA FL++IK+AYD + LANLL+ PEF + I+DRQ AWRRV+ +A
Sbjct: 358 GELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIAAE 417
Query: 413 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
GI P S+SL YFDSYRR+RLP NL QAQRDYFGAHTYER D GSFH +WF
Sbjct: 418 RGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQWF 471
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/469 (53%), Positives = 330/469 (70%), Gaps = 14/469 (2%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GLAVMG+NLALNI +GF +SVYNR++SK +E ++ AK + + G E FV
Sbjct: 5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAG D TI++L ++EK D +IDGGN +Y++T+RR K +AE G+
Sbjct: 62 QSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIH 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EA++ ++ IL ++A+V D PC TY+ G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKV-DGEPCTTYIGPDGAGHY 180
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGI 248
VKM+HNGIEYGDMQLI+E+Y +LK V L+ +EL VF EWNKGEL S+LIEITADIF
Sbjct: 181 VKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTK 240
Query: 249 KDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERV-----EAAKVFKSGGF 303
KD++ LVD +LDK G KGTGKWT Q A DL V P I E V A K +
Sbjct: 241 KDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKAS 300
Query: 304 GVQSNQAV-----DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI 358
G+ S V +K++LI+ VR+AL+ SKICSYAQG ++A S E WDLK GE+A I
Sbjct: 301 GLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMI 360
Query: 359 WKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTP 418
++GGCIIRA FL +IK+AYDR +L NLL+D F + Q A R+V+ LA+ G+ P
Sbjct: 361 FRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVP 420
Query: 419 GMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467
SS+LAY+DSYR LPANL+QAQRDYFGAHTYER D EG FHTEW K
Sbjct: 421 SFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/472 (54%), Positives = 320/472 (67%), Gaps = 18/472 (3%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFV 68
G+ GLAVMG+NLALN+ +GFPI+V+NR+ +K ++ ERA + + E FV
Sbjct: 13 FGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAVGKDIKAAYTV---EEFV 69
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+++PR I+++VKAG PVD I L +E+GD IIDGGN YE+TERR K + GL
Sbjct: 70 QLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLG 129
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV--PDSGPCVTYVSKGGSG 186
++GMGVSGGEEGA GPSLMPGG+ AYK +E IL K+AAQV PD+ CVT++ GG+G
Sbjct: 130 FVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAG 189
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG-ELLSFLIEITADI 245
++VKM+HNGIEYGDMQLIAEAYD+LK+ L+NE+L VF +WN+ EL SFLIEI+ DI
Sbjct: 190 HYVKMVHNGIEYGDMQLIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDI 249
Query: 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEA--------AKV 297
F KD + G+L+D +LD G KGTG+WTV +L V PTI V A +V
Sbjct: 250 FAKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERV 309
Query: 298 FKSGGF-GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 356
SG G + D + I VR ALY SK+CSYAQGM LI S E G+D+ L E+A
Sbjct: 310 AASGQLSGPSKTFSGDVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDVNLPEIA 369
Query: 357 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 416
RIWKGGCIIRA FLD+IKKA+ N L NLL+ PEF + I+DRQ WR V+ LA GI+
Sbjct: 370 RIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLANEMGIA 429
Query: 417 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS--FHTEWF 466
P SSSL YFDSYRR LP NL QAQRDYFGAHTYER D FHTEW
Sbjct: 430 VPAFSSSLDYFDSYRRAVLPQNLTQAQRDYFGAHTYERTDKPRGEFFHTEWL 481
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 474 | ||||||
| 225425051 | 485 | PREDICTED: 6-phosphogluconate dehydrogen | 0.987 | 0.964 | 0.908 | 0.0 | |
| 255579936 | 488 | 6-phosphogluconate dehydrogenase, putati | 0.997 | 0.969 | 0.901 | 0.0 | |
| 356526585 | 499 | PREDICTED: 6-phosphogluconate dehydrogen | 0.985 | 0.935 | 0.883 | 0.0 | |
| 356526581 | 486 | PREDICTED: 6-phosphogluconate dehydrogen | 0.985 | 0.960 | 0.883 | 0.0 | |
| 224127314 | 488 | predicted protein [Populus trichocarpa] | 0.997 | 0.969 | 0.876 | 0.0 | |
| 224079938 | 488 | predicted protein [Populus trichocarpa] | 0.997 | 0.969 | 0.880 | 0.0 | |
| 356573793 | 488 | PREDICTED: 6-phosphogluconate dehydrogen | 0.997 | 0.969 | 0.866 | 0.0 | |
| 356573791 | 499 | PREDICTED: 6-phosphogluconate dehydrogen | 0.997 | 0.947 | 0.866 | 0.0 | |
| 356573789 | 533 | PREDICTED: 6-phosphogluconate dehydrogen | 0.997 | 0.887 | 0.866 | 0.0 | |
| 224099285 | 485 | predicted protein [Populus trichocarpa] | 0.987 | 0.964 | 0.879 | 0.0 |
| >gi|225425051|ref|XP_002271021.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Vitis vinifera] gi|225425053|ref|XP_002270984.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/482 (90%), Positives = 458/482 (95%), Gaps = 14/482 (2%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
++RIGL+GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LPL+GF DPES
Sbjct: 4 VSRIGLSGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 63
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FVNSIQKPRVIIMLVKAGAPVD+TIKTLS Y+EKGDCIIDGGNEWYENTERREKAMAELG
Sbjct: 64 FVNSIQKPRVIIMLVKAGAPVDQTIKTLSGYLEKGDCIIDGGNEWYENTERREKAMAELG 123
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 124 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 183
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL+NVF+EWNKGELLSFLIEITADIF
Sbjct: 184 NFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRNVFSEWNKGELLSFLIEITADIF 243
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVE 293
IKDDKGDG+LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI EERVE
Sbjct: 244 SIKDDKGDGFLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVE 303
Query: 294 AAKVFKSGGF-GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 352
AAKVFKS GF V S+Q VDK+KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL
Sbjct: 304 AAKVFKSSGFENVLSDQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 363
Query: 353 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 412
GELARIWKGGCIIRA+FLDRIKKAYDRNADLANLLVDPEFAKEIV+RQSAWRRVVCLAIN
Sbjct: 364 GELARIWKGGCIIRAIFLDRIKKAYDRNADLANLLVDPEFAKEIVERQSAWRRVVCLAIN 423
Query: 413 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQS 472
SGISTPGMSSSLAYFDSYRR+RLPANLVQAQRDYFGAHTYERID GSFHTEWFKIA+QS
Sbjct: 424 SGISTPGMSSSLAYFDSYRRDRLPANLVQAQRDYFGAHTYERIDTTGSFHTEWFKIAQQS 483
Query: 473 KI 474
KI
Sbjct: 484 KI 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579936|ref|XP_002530803.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223529624|gb|EEF31571.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/487 (90%), Positives = 459/487 (94%), Gaps = 14/487 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EGDLPL+G
Sbjct: 1 MAAPPKPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKREGDLPLYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
F DPESFV SIQKPRVIIMLVKAGAPVD+TIKTLSAYMEKGDCIIDGGNEWYENTERREK
Sbjct: 61 FHDPESFVKSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AMA+LGL YLGMGVSGGEEGAR+GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMADLGLQYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKM+HNGIEYGDMQLIAEAYDVLKS+GKL+NEELQ+VF EWNKGELLSFLIE
Sbjct: 181 GKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSIGKLSNEELQSVFAEWNKGELLSFLIE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI
Sbjct: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
Query: 289 -EERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 346
EERVEAAKVFKSGGFG + ++Q +DK+KL+DDVRQALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 301 KEERVEAAKVFKSGGFGDILTDQVIDKKKLVDDVRQALYAAKICSYAQGMNLIRAKSIEK 360
Query: 347 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 406
WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 361 VWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 420
Query: 407 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYER+DMEGSFHTEWF
Sbjct: 421 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERVDMEGSFHTEWF 480
Query: 467 KIAKQSK 473
KIA+Q K
Sbjct: 481 KIARQLK 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526585|ref|XP_003531897.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/481 (88%), Positives = 461/481 (95%), Gaps = 14/481 (2%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LP++G+ DPE+F
Sbjct: 19 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAF 78
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V+SIQKPRVIIMLVKAGAPVD+TIKTLSAYMEKGDCIIDGGNEWYENTERREK++AELGL
Sbjct: 79 VHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGL 138
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPSLMPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+ KGGSGN
Sbjct: 139 LYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 198
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+VF+EWNKGELLSFLIEITADIFG
Sbjct: 199 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFG 258
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI EERVEA
Sbjct: 259 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 318
Query: 295 AKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 353
AKVFKSGG G + ++Q VDK+KL+DDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 319 AKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 378
Query: 354 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 413
ELARIWKGGCIIRA+FLDRIK+AYDRN +LANLLVDPEFAKEI+DRQSAWRRVVCLAINS
Sbjct: 379 ELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINS 438
Query: 414 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 473
GISTPGMS+SLAYFD+YRRERLPANLVQAQRDYFGAHTYER+D+EGS+HTEWFK+AKQS+
Sbjct: 439 GISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 498
Query: 474 I 474
I
Sbjct: 499 I 499
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526581|ref|XP_003531895.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Glycine max] gi|356526583|ref|XP_003531896.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/481 (88%), Positives = 461/481 (95%), Gaps = 14/481 (2%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LP++G+ DPE+F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAF 65
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V+SIQKPRVIIMLVKAGAPVD+TIKTLSAYMEKGDCIIDGGNEWYENTERREK++AELGL
Sbjct: 66 VHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGL 125
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR+GPSLMPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+ KGGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 185
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+VF+EWNKGELLSFLIEITADIFG
Sbjct: 186 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFG 245
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI EERVEA
Sbjct: 246 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 305
Query: 295 AKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 353
AKVFKSGG G + ++Q VDK+KL+DDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 306 AKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 365
Query: 354 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 413
ELARIWKGGCIIRA+FLDRIK+AYDRN +LANLLVDPEFAKEI+DRQSAWRRVVCLAINS
Sbjct: 366 ELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINS 425
Query: 414 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 473
GISTPGMS+SLAYFD+YRRERLPANLVQAQRDYFGAHTYER+D+EGS+HTEWFK+AKQS+
Sbjct: 426 GISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 485
Query: 474 I 474
I
Sbjct: 486 I 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127314|ref|XP_002329247.1| predicted protein [Populus trichocarpa] gi|222870701|gb|EEF07832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/487 (87%), Positives = 460/487 (94%), Gaps = 14/487 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV RAKKEGDLPL+G
Sbjct: 1 MAAPPKPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVVRAKKEGDLPLYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
F DPESFV SIQKPRV+IMLVKAG+PVD+TIKTLSAY+EKGDCIIDGGNEWYENTERREK
Sbjct: 61 FHDPESFVKSIQKPRVVIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AMAELGLLYLGMGVSGGEEGAR+GPS+MPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMAELGLLYLGMGVSGGEEGARNGPSMMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+N+EL++VF+EWNKGELLSFL+E
Sbjct: 181 GKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNDELRSVFSEWNKGELLSFLVE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
ITADIFGIKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI
Sbjct: 241 ITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
Query: 289 -EERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 346
EERVEAAKVFK+GGFG + ++Q VDK++LIDDVRQALYASKICSYAQGMNLIRAKS+EK
Sbjct: 301 KEERVEAAKVFKAGGFGDILTDQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSMEK 360
Query: 347 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 406
GWDL+LGELARIWKGGCIIRAVFLDRIKKAYDRN DLANLLVDPEFAKEI++RQSAWRRV
Sbjct: 361 GWDLELGELARIWKGGCIIRAVFLDRIKKAYDRNPDLANLLVDPEFAKEIIERQSAWRRV 420
Query: 407 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
VCLAINSGISTPGMSSSLAYFD++RRERLPANLVQAQRDYFGAHTYER+D+EGSFHTEWF
Sbjct: 421 VCLAINSGISTPGMSSSLAYFDTFRRERLPANLVQAQRDYFGAHTYERVDVEGSFHTEWF 480
Query: 467 KIAKQSK 473
KIA+Q K
Sbjct: 481 KIARQLK 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079938|ref|XP_002305978.1| predicted protein [Populus trichocarpa] gi|222848942|gb|EEE86489.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/487 (88%), Positives = 457/487 (93%), Gaps = 14/487 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + TRIGLAGLAVMGQNLALNIAEKGFPISVYNR+TSKVDETVERAKKEGDLPL+G
Sbjct: 1 MAAPTKPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETVERAKKEGDLPLYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
F DPESFV SIQKPRVIIMLVKAG+PVD+TIKTLSAY+EKGDCIIDGGNEWYENTERREK
Sbjct: 61 FHDPESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AMAELGLLYLGMGVSGGEEGAR+GPS+MPGGSFEA+KYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMAELGLLYLGMGVSGGEEGARNGPSMMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL++VF EWNKGELLSFLIE
Sbjct: 181 GKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRSVFAEWNKGELLSFLIE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
ITADIFGIKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI
Sbjct: 241 ITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300
Query: 289 -EERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 346
EERVEAAKVFK+GGFG + + Q VDK++LIDDVRQALYASKICSYAQGMNLIRAKSIEK
Sbjct: 301 KEERVEAAKVFKAGGFGDILTGQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSIEK 360
Query: 347 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 406
GWDLKLGELARIWKGGCIIRAVFLD IKKAYDRN DLANLLVDPEFAKEI++RQSAWRRV
Sbjct: 361 GWDLKLGELARIWKGGCIIRAVFLDWIKKAYDRNPDLANLLVDPEFAKEIIERQSAWRRV 420
Query: 407 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
VC+AI+SGISTPGMSSSLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D+EGSFHTEWF
Sbjct: 421 VCVAISSGISTPGMSSSLAYFDTYRRGRLPANLVQAQRDYFGAHTYERVDVEGSFHTEWF 480
Query: 467 KIAKQSK 473
KIA+Q K
Sbjct: 481 KIARQCK 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573793|ref|XP_003555040.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/487 (86%), Positives = 456/487 (93%), Gaps = 14/487 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAK+EG+LP++G
Sbjct: 1 MAQPASLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYG 60
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
+ DP+ FV SIQKPRVIIMLVKAGAPVD+TIKTLSA++EKGDCIIDGGNEWYENTERREK
Sbjct: 61 YHDPKFFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREK 120
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AM+ELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 121 AMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+ F+EWNKGELLSFLIE
Sbjct: 181 GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
ITADIFGIKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI
Sbjct: 241 ITADIFGIKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGL 300
Query: 289 -EERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 346
EERVEA+KVFKS GF + S+Q VDK++LIDDVR+ALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 301 KEERVEASKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEK 360
Query: 347 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 406
GWDLKLGELARIWKGGCIIRA+FLDRIKKAYDRN +LANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 361 GWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRV 420
Query: 407 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
VCLAIN G STPGM++SLAYFD+YRRER+PANLVQAQRDYFGAHTYERIDMEGSFHTEWF
Sbjct: 421 VCLAINYGTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 480
Query: 467 KIAKQSK 473
K+AKQS+
Sbjct: 481 KLAKQSR 487
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573791|ref|XP_003555039.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/487 (86%), Positives = 456/487 (93%), Gaps = 14/487 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAK+EG+LP++G
Sbjct: 12 MAQPASLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYG 71
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
+ DP+ FV SIQKPRVIIMLVKAGAPVD+TIKTLSA++EKGDCIIDGGNEWYENTERREK
Sbjct: 72 YHDPKFFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREK 131
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AM+ELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 132 AMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 191
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+ F+EWNKGELLSFLIE
Sbjct: 192 GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIE 251
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
ITADIFGIKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI
Sbjct: 252 ITADIFGIKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGL 311
Query: 289 -EERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 346
EERVEA+KVFKS GF + S+Q VDK++LIDDVR+ALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 312 KEERVEASKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEK 371
Query: 347 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 406
GWDLKLGELARIWKGGCIIRA+FLDRIKKAYDRN +LANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 372 GWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRV 431
Query: 407 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
VCLAIN G STPGM++SLAYFD+YRRER+PANLVQAQRDYFGAHTYERIDMEGSFHTEWF
Sbjct: 432 VCLAINYGTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 491
Query: 467 KIAKQSK 473
K+AKQS+
Sbjct: 492 KLAKQSR 498
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573789|ref|XP_003555038.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/487 (86%), Positives = 456/487 (93%), Gaps = 14/487 (2%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M + LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAK+EG+LP++G
Sbjct: 46 MAQPASLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYG 105
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
+ DP+ FV SIQKPRVIIMLVKAGAPVD+TIKTLSA++EKGDCIIDGGNEWYENTERREK
Sbjct: 106 YHDPKFFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREK 165
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AM+ELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+
Sbjct: 166 AMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 225
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL+NEELQ+ F+EWNKGELLSFLIE
Sbjct: 226 GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIE 285
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
ITADIFGIKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTI
Sbjct: 286 ITADIFGIKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGL 345
Query: 289 -EERVEAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 346
EERVEA+KVFKS GF + S+Q VDK++LIDDVR+ALYA+KICSYAQGMNLIRAKSIEK
Sbjct: 346 KEERVEASKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEK 405
Query: 347 GWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRV 406
GWDLKLGELARIWKGGCIIRA+FLDRIKKAYDRN +LANLLVDPEFAKEIVDRQSAWRRV
Sbjct: 406 GWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRV 465
Query: 407 VCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
VCLAIN G STPGM++SLAYFD+YRRER+PANLVQAQRDYFGAHTYERIDMEGSFHTEWF
Sbjct: 466 VCLAINYGTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 525
Query: 467 KIAKQSK 473
K+AKQS+
Sbjct: 526 KLAKQSR 532
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099285|ref|XP_002311423.1| predicted protein [Populus trichocarpa] gi|222851243|gb|EEE88790.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/482 (87%), Positives = 448/482 (92%), Gaps = 14/482 (2%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT KVDETVERAK+EGDLPL+GF DPES
Sbjct: 4 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTLKVDETVERAKQEGDLPLYGFHDPES 63
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FV SIQKPRVII+LVKAGAPVD+TIKTLS YMEKGDCIIDGGNEWYENTERREKA+AELG
Sbjct: 64 FVKSIQKPRVIIILVKAGAPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERREKALAELG 123
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGE+GARHGPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 124 LLYLGMGVSGGEDGARHGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYIGKGGSG 183
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLIAEAYDVLKSVGKLTNEEL VF+EWNKGELLSFLIEITADIF
Sbjct: 184 NFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELCQVFSEWNKGELLSFLIEITADIF 243
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVE 293
GIKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTI EERVE
Sbjct: 244 GIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDGRFLSGLKEERVE 303
Query: 294 AAKVFKSGG-FGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 352
AAKVFKS G + ++Q VDK+KLI DVRQALY SKICSYAQGMNLIRAKS EKGWDLKL
Sbjct: 304 AAKVFKSSGIIDMLADQVVDKEKLIYDVRQALYVSKICSYAQGMNLIRAKSAEKGWDLKL 363
Query: 353 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 412
G+L RIWKGGCIIRAVFLDRIKKAYDRN +L NLLVDPEFAKEI++RQSAWRRVV +AIN
Sbjct: 364 GQLTRIWKGGCIIRAVFLDRIKKAYDRNPNLPNLLVDPEFAKEIIERQSAWRRVVSIAIN 423
Query: 413 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQS 472
SGISTPGMSSSLAYFD+YRR RLPANLVQAQRDYFGAHTYERID++GSFHTEWFKIAKQS
Sbjct: 424 SGISTPGMSSSLAYFDTYRRSRLPANLVQAQRDYFGAHTYERIDIDGSFHTEWFKIAKQS 483
Query: 473 KI 474
KI
Sbjct: 484 KI 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 474 | ||||||
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.989 | 0.965 | 0.838 | 1.1e-215 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.981 | 0.968 | 0.827 | 8.9e-212 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.993 | 0.967 | 0.713 | 3.3e-182 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.588 | 0.549 | 0.674 | 8.9e-182 | |
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.991 | 0.965 | 0.712 | 1.4e-181 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.978 | 0.864 | 0.713 | 3e-179 | |
| GENEDB_PFALCIPARUM|PF14_0520 | 468 | PF14_0520 "6-phosphogluconate | 0.957 | 0.970 | 0.513 | 1.4e-119 | |
| UNIPROTKB|Q8IKT2 | 468 | PF14_0520 "6-phosphogluconate | 0.957 | 0.970 | 0.513 | 1.4e-119 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.949 | 0.959 | 0.494 | 3.7e-119 | |
| UNIPROTKB|P14062 | 468 | gnd "6-phosphogluconate dehydr | 0.957 | 0.970 | 0.511 | 1.8e-117 |
| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2084 (738.7 bits), Expect = 1.1e-215, P = 1.1e-215
Identities = 405/483 (83%), Positives = 442/483 (91%)
Query: 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPE 65
Q TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG+LPL+GF DPE
Sbjct: 4 QPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPE 63
Query: 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
SFV SIQKPRVIIMLVKAG+PVD+TIKTLSAY+EKGDCI+DGGNEWYENTERREKA+AE
Sbjct: 64 SFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAEN 123
Query: 126 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGS 185
G LYLGMGVSGGEEGAR+GPS+MPGGS+EAYK IEDI+LKVAAQV DSGPCVTY+ KGGS
Sbjct: 124 GFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGS 183
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXX 245
GNFVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL +VF++WNKGEL SFL+EITA
Sbjct: 184 GNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADI 243
Query: 246 XXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE-------------ERV 292
+LVDKVLDKTGMKGTGKWTVQQAA+LSV APTIE ERV
Sbjct: 244 FGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERV 303
Query: 293 EAAKVFKSGGFG-VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 351
+AAKVFK+GGFG + ++Q VDK++L+DDVR+ALYASKICSYAQGMNLIRAKSIEKGW LK
Sbjct: 304 QAAKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 352 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 411
LGELARIWKGGCIIRA+FLDRIK+AYDRNA+LANLLVDPEFAKEI++RQSAWRRVVCLAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 412 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 471
NSGISTPGMS+SLAYFDSYRRERLPANLVQAQRDYFGAHTYER D+EGSFHTEWFKIA+Q
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQ 483
Query: 472 SKI 474
SKI
Sbjct: 484 SKI 486
|
|
| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2047 (725.6 bits), Expect = 8.9e-212, P = 8.9e-212
Identities = 398/481 (82%), Positives = 435/481 (90%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
+TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EG+LP++GF DP S
Sbjct: 3 VTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPAS 62
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FVNSIQKPRV+IMLVKAGAPVD+TI TL+A++E+GDCIIDGGNEWYENTERREKAM E G
Sbjct: 63 FVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERG 122
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGAR+GPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTY+ KGGSG
Sbjct: 123 LLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSG 182
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXX 246
NFVKM+HNGIEYGDMQLI+EAYDVLKSVGKLTN ELQ VF+EWNKGELLSFLIEITA
Sbjct: 183 NFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADIF 242
Query: 247 XXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE-------------ERVE 293
+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTIE ERVE
Sbjct: 243 SIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERVE 302
Query: 294 AAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 353
AAKVF+ G F SN VDK +LI+DVRQALYASKICSYAQGMN+I+AKS+EKGW L LG
Sbjct: 303 AAKVFQ-GDFS--SNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLG 359
Query: 354 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 413
ELARIWKGGCIIRA+FLDRIKKAYDRN+DLANLLVDPEFA+EI+DRQ+AWRRVVCLAIN+
Sbjct: 360 ELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINN 419
Query: 414 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSK 473
G+STPGMS+SLAYFDSYRR+RLPANLVQAQRDYFGAHTYER+DM GSFHTEWFKIA+ +K
Sbjct: 420 GVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAK 479
Query: 474 I 474
+
Sbjct: 480 M 480
|
|
| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
Identities = 348/488 (71%), Positives = 402/488 (82%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET++RA EG LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI LS YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF AY ++DIL KVAAQV D GPCVTY+
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+N+EL +FTEWN+GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEI 239
Query: 242 TAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------- 288
T+ LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI
Sbjct: 240 TSDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 289 EERVEAAKVFKSGGFGVQ---SNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 345
+ER AAKV + G +++ VDK++LIDDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 346 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 405
KGWDL LGE+ARIWKGGCIIRAVFLDRIKKAY RN +LA+L+VDP+FAKE+V RQ+AWRR
Sbjct: 360 KGWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRR 419
Query: 406 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
VV LAI++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 466 FKIAKQSK 473
K+A++S+
Sbjct: 480 TKLARKSQ 487
|
|
| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 191/283 (67%), Positives = 221/283 (78%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
RIGLAGLA MGQNLALNIAEKGFPISVYNRT +KVD TV RA+ EG LP+ G RDP FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S+ +PR +++LV+AG VD TI L Y++ GD I+DGGNEWY+NTERR + A G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
YLGMGVSGGEEGAR+GPSLMPGG +AY I DIL K AAQ D G CVT+V GG+GNF
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTED-GACVTFVGPGGAGNF 201
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAYDVL+ VG L+N E+ +VF EWN+GEL SFL+EITA
Sbjct: 202 VKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTV 261
Query: 249 XX---XXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288
LVDK+LDKTGMKGTGKWTVQQAA+L++AAPTI
Sbjct: 262 ADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTI 304
|
|
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 347/487 (71%), Positives = 398/487 (81%)
Query: 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF 61
+E L+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET++RA EG+LP+ G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 62 RDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121
P FV SIQ+PR +I+LVKAGAPVD+TI S YME GDCIIDGGNEWY+NTERR
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 122 MAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
+ GLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY I+DIL KVAAQV D GPCVTY+
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIG 179
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241
+GGSGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +FTEWN GEL SFL+EI
Sbjct: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEI 239
Query: 242 TAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------- 288
T+ LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI
Sbjct: 240 TSDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
Query: 289 EERVEAAKVFKSGGFGVQSNQA---VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIE 345
+ER AAKV + G + A +DK++L+DDVRQALYASKICSYAQGMNL+RAKS+E
Sbjct: 300 DERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLE 359
Query: 346 KGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRR 405
K W+L GELARIWKGGCIIRAVFLDRIKKAY RN DLA+L+VDPEFAKE+V RQ+AWRR
Sbjct: 360 KSWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRR 419
Query: 406 VVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
VV LA+++GISTPGM +SLAYFD+YRR RLPANLVQAQRD FGAHTYER D G++HTEW
Sbjct: 420 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEW 479
Query: 466 FKIAKQS 472
K+A+++
Sbjct: 480 TKLARKN 486
|
|
| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 343/481 (71%), Positives = 394/481 (81%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++IGL GLAVMGQNLALNIAEKGFPISVYNRT SKVDET++RAK EGDLPL G P F
Sbjct: 49 SQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPRDF 108
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V SI++PR I++LVKAG+PVD+TI +L+++ME GD IIDGGNEWY+NTERR GL
Sbjct: 109 VLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSNGL 168
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
LYLGMGVSGGEEGAR GPSLMPGG F+AY I+ IL KVAAQV D GPCVTY+ +GGSGN
Sbjct: 169 LYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQV-DDGPCVTYIGEGGSGN 227
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXX 247
FVKM+HNGIEYGDMQLI+EAYDVLK+VG L+NEEL +F EWNK EL SFL+EITA
Sbjct: 228 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIFK 287
Query: 248 XXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI EER A
Sbjct: 288 VKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENA 347
Query: 295 AKVFKSGGFGVQSNQ---AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 351
AK+ ++ G + N VDK++LIDDVRQALYASKICSYAQGMNL+RAKS E GWDL
Sbjct: 348 AKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDLN 407
Query: 352 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 411
LGELARIWKGGCIIRAVFLD IK+AY RN +LA+L+VDPEFAKE+V RQ+AWRRVV LA+
Sbjct: 408 LGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLAV 467
Query: 412 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 471
++GISTPGM +SLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D+ GS+HTEW K+A++
Sbjct: 468 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARK 527
Query: 472 S 472
S
Sbjct: 528 S 528
|
|
| GENEDB_PFALCIPARUM|PF14_0520 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 240/467 (51%), Positives = 312/467 (66%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IGL GLAVMGQNL+LNI+ KGF I VYNRT + +ET++RAK+E +L ++G++ E +N
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRAKEE-NLVVYGYKTVEELIN 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+++KPR +I+L+KAG VDE I + + EKGD IIDGGNEWY N+ERR K E + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
L MGVSGGE GAR+G S MPGGS AY +++IL K +AQV +S PCVTY+ G SGN+V
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNS-PCVTYIGPGSSGNYV 181
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI+E+Y ++K + K N++L VF +WN+G L S+LIEITA
Sbjct: 182 KMVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKK 241
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAK--VFKSGGFGVQS 307
YLVD +LD G KGTGKWT+ +A + + PT+ ++A VFK +S
Sbjct: 242 DDLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAES 301
Query: 308 NQAVDK------QKLID---DVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI 358
N D + L D D+ ALY KI SY QG+ L++ S E W L LGE+ARI
Sbjct: 302 NFNKDNILIDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGEIARI 361
Query: 359 WKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTP 418
W+GGCIIRAVFLDRI AY N L L +D EF+ +I ++ + R++V +A I P
Sbjct: 362 WRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYSIPIP 421
Query: 419 GMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
S+SLAYF + LP NLVQAQRDYFG+HTY R D EG++HT W
Sbjct: 422 AFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q8IKT2 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 240/467 (51%), Positives = 312/467 (66%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IGL GLAVMGQNL+LNI+ KGF I VYNRT + +ET++RAK+E +L ++G++ E +N
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRAKEE-NLVVYGYKTVEELIN 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+++KPR +I+L+KAG VDE I + + EKGD IIDGGNEWY N+ERR K E + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
L MGVSGGE GAR+G S MPGGS AY +++IL K +AQV +S PCVTY+ G SGN+V
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNS-PCVTYIGPGSSGNYV 181
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI+E+Y ++K + K N++L VF +WN+G L S+LIEITA
Sbjct: 182 KMVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKK 241
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAK--VFKSGGFGVQS 307
YLVD +LD G KGTGKWT+ +A + + PT+ ++A VFK +S
Sbjct: 242 DDLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAES 301
Query: 308 NQAVDK------QKLID---DVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI 358
N D + L D D+ ALY KI SY QG+ L++ S E W L LGE+ARI
Sbjct: 302 NFNKDNILIDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGEIARI 361
Query: 359 WKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTP 418
W+GGCIIRAVFLDRI AY N L L +D EF+ +I ++ + R++V +A I P
Sbjct: 362 WRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYSIPIP 421
Query: 419 GMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
S+SLAYF + LP NLVQAQRDYFG+HTY R D EG++HT W
Sbjct: 422 AFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
Identities = 233/471 (49%), Positives = 320/471 (67%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+ VMG++LALN KG+ +++Y+ + KVDET+E + + L G E FV
Sbjct: 5 QIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETIEENRGKN---LVGTHIVEEFV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
NS++ PR I+++V AG D+ I +L +++KGD +IDGGN ++ +T RR K +AE G+
Sbjct: 62 NSLESPRKILLMVNAGEITDKAIDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAEEGIN 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG +AY+ ++D+L ++A+V ++ PC +Y+ G+G++
Sbjct: 122 FIGAGVSGGEEGALKGPSIMPGGQKDAYEKVKDMLENISAKV-NNEPCCSYIGPNGAGHY 180
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLI EAY LK LT EE +F EWNKGEL S+LIEITA
Sbjct: 181 VKMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNSYLIEITADIFKK 240
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAA 295
LVD +LD G KGTGKWT Q A DL ++ P I EERV A+
Sbjct: 241 KDEETGKPLVDVILDTAGQKGTGKWTSQSALDLGISLPIITESVFARCISALKEERVNAS 300
Query: 296 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 355
KV G ++ V+K +LI+ VRQALY SKICSYAQG ++A S E W+L G +
Sbjct: 301 KVLS--GPKDKTAIGVEKAELIEAVRQALYMSKICSYAQGFTQLKAASEEYNWNLDFGSI 358
Query: 356 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 414
+ +W+GGCIIRA FL IK+AY+ N DL NLL+DP F KEIV+ Q R+++ +A+ G
Sbjct: 359 SMLWRGGCIIRAAFLQNIKEAYETNTDLPNLLLDPYF-KEIVESYQGGLRQIISMAVQQG 417
Query: 415 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
I P S++++Y+DSYR +LPANL+QAQRDYFGAHTY+R+D EG+FHT+W
Sbjct: 418 IPIPAFSAAISYYDSYRTAKLPANLLQAQRDYFGAHTYKRVDKEGTFHTKW 468
|
|
| UNIPROTKB|P14062 gnd "6-phosphogluconate dehydrogenase, decarboxylating" [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (taxid:99287)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 240/469 (51%), Positives = 312/469 (66%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +SV+NR+ K +E + A+ G L + + FV
Sbjct: 5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y+EKGD IIDGGN ++++T RR + ++ G
Sbjct: 62 ESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFN 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG +AY+ + IL K+AA D PCVTY+ G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 181
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK L+NEEL N FTEWN GEL S+LI+IT
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELANTFTEWNNGELSSYLIDITKDIFTK 241
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERV--------EAAKVFKS 300
YLVD +LD+ KGTGKWT Q A DL I E V +A +V S
Sbjct: 242 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKAQRVAAS 300
Query: 301 GGF-GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIW 359
G ++ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+A+I+
Sbjct: 301 KVLSGPKAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYHWDLNYGEIAKIF 360
Query: 360 KGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSGISTP 418
+ GCIIRA FL +I AY NAD+ANLL+ P F K+I D Q A R VV A+ +GI P
Sbjct: 361 RAGCIIRAQFLQKITDAYAENADIANLLLAPYF-KKIADEYQQALRDVVAYAVQNGIPVP 419
Query: 419 GMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467
S+++AY+DSYR LPANL+QAQRDYFGAHTY+R D EG FHTEW +
Sbjct: 420 TFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEWLE 468
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9PKX7 | 6PGD_CHLMU | 1, ., 1, ., 1, ., 4, 4 | 0.4469 | 0.9662 | 0.9561 | yes | no |
| Q7VMX4 | 6PGD_HAEDU | 1, ., 1, ., 1, ., 4, 4 | 0.4796 | 0.9556 | 0.9359 | yes | no |
| P96789 | 6PGD_LACLM | 1, ., 1, ., 1, ., 4, 4 | 0.4989 | 0.9493 | 0.9533 | yes | no |
| Q8TA03 | 6PGD_DICDI | 1, ., 1, ., 1, ., 4, 4 | 0.4822 | 0.9472 | 0.9107 | yes | no |
| P41580 | 6PGD_SHISO | 1, ., 1, ., 1, ., 4, 4 | 0.5099 | 0.9113 | 0.9707 | yes | no |
| Q6GGI7 | 6PGD_STAAR | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
| P41582 | 6PGD_CITDI | 1, ., 1, ., 1, ., 4, 4 | 0.5176 | 0.9092 | 0.9685 | yes | no |
| P41583 | 6PGD_CITFR | 1, ., 1, ., 1, ., 4, 4 | 0.5099 | 0.9071 | 0.9662 | N/A | no |
| Q9LI00 | 6PGD1_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.8461 | 0.9810 | 0.9687 | yes | no |
| P53319 | 6PGD2_YEAST | 1, ., 1, ., 1, ., 4, 4 | 0.4904 | 0.9535 | 0.9186 | yes | no |
| P70718 | 6PGD_AGGAC | 1, ., 1, ., 1, ., 4, 4 | 0.4904 | 0.9472 | 0.9276 | yes | no |
| P57208 | 6PGD_BUCAI | 1, ., 1, ., 1, ., 4, 4 | 0.4670 | 0.9451 | 0.9572 | yes | no |
| P85968 | 6PGD_RAT | 1, ., 1, ., 1, ., 4, 4 | 0.4872 | 0.9493 | 0.9316 | yes | no |
| Q9FFR3 | 6PGD2_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7315 | 0.9936 | 0.9671 | no | no |
| P00350 | 6PGD_ECOLI | 1, ., 1, ., 1, ., 4, 4 | 0.5180 | 0.9493 | 0.9615 | N/A | no |
| Q931R3 | 6PGD_STAAM | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
| Q94KU1 | 6PGD1_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.8648 | 0.9810 | 0.9627 | N/A | no |
| Q94KU2 | 6PGD2_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.7297 | 0.9789 | 0.8640 | N/A | no |
| P63335 | 6PGD_STAAW | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
| P63334 | 6PGD_STAAN | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
| Q5HP42 | 6PGD_STAEQ | 1, ., 1, ., 1, ., 4, 4 | 0.5085 | 0.9472 | 0.9594 | yes | no |
| O84066 | 6PGD_CHLTR | 1, ., 1, ., 1, ., 4, 4 | 0.4460 | 0.9725 | 0.9604 | yes | no |
| P41575 | 6PGD_RAOPL | 1, ., 1, ., 1, ., 4, 4 | 0.5055 | 0.9071 | 0.9662 | N/A | no |
| P52208 | 6PGD_SYNY3 | 1, ., 1, ., 1, ., 4, 4 | 0.5487 | 0.9578 | 0.9419 | N/A | no |
| P37754 | 6PGD9_ECOLX | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
| P37756 | 6PGD_SHIFL | 1, ., 1, ., 1, ., 4, 4 | 0.5138 | 0.9493 | 0.9615 | yes | no |
| P41574 | 6PGD_ESCVU | 1, ., 1, ., 1, ., 4, 4 | 0.5132 | 0.9092 | 0.9685 | N/A | no |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7268 | 0.9915 | 0.9650 | no | no |
| P41581 | 6PGD_CITAM | 1, ., 1, ., 1, ., 4, 4 | 0.5110 | 0.9092 | 0.9685 | N/A | no |
| Q89AX5 | 6PGD_BUCBP | 1, ., 1, ., 1, ., 4, 4 | 0.4406 | 0.9472 | 0.9594 | yes | no |
| P80859 | 6PGD2_BACSU | 1, ., 1, ., 1, ., 4, 4 | 0.5394 | 0.9599 | 0.9701 | yes | no |
| Q9FWA3 | 6GPD3_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8633 | 0.9894 | 0.9650 | yes | no |
| P41577 | 6PGD_RAOTE | 1, ., 1, ., 1, ., 4, 4 | 0.5121 | 0.9071 | 0.9662 | N/A | no |
| P41576 | 6PGD_KLEPN | 1, ., 1, ., 1, ., 4, 4 | 0.5105 | 0.9514 | 0.9636 | yes | no |
| P21577 | 6PGD_SYNE7 | 1, ., 1, ., 1, ., 4, 4 | 0.5654 | 0.9599 | 0.9660 | yes | no |
| Q9ZHD9 | 6PGD_BUCAP | 1, ., 1, ., 1, ., 4, 4 | 0.4585 | 0.9514 | 0.9534 | yes | no |
| Q9CHU6 | 6PGD_LACLA | 1, ., 1, ., 1, ., 4, 4 | 0.5074 | 0.9493 | 0.9533 | yes | no |
| P41572 | 6PGD_DROME | 1, ., 1, ., 1, ., 4, 4 | 0.4893 | 0.9430 | 0.9293 | yes | no |
| P41579 | 6PGD_SHIDY | 1, ., 1, ., 1, ., 4, 4 | 0.5099 | 0.9113 | 0.9707 | yes | no |
| P41578 | 6PGD_SHIBO | 1, ., 1, ., 1, ., 4, 4 | 0.5077 | 0.9113 | 0.9707 | yes | no |
| P14062 | 6PGD_SALTY | 1, ., 1, ., 1, ., 4, 4 | 0.5190 | 0.9514 | 0.9636 | yes | no |
| Q6G954 | 6PGD_STAAS | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
| Q8CP47 | 6PGD_STAES | 1, ., 1, ., 1, ., 4, 4 | 0.5085 | 0.9472 | 0.9594 | yes | no |
| O13287 | 6PGD_CANAX | 1, ., 1, ., 1, ., 4, 4 | 0.5076 | 0.9282 | 0.8510 | N/A | no |
| Q17761 | 6PGD_CAEEL | 1, ., 1, ., 1, ., 4, 4 | 0.4607 | 0.9493 | 0.9297 | yes | no |
| Q5HFR2 | 6PGD_STAAC | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9514 | 0.9636 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_1230010 | SubName- Full=Putative uncharacterized protein; (489 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_Genewise1_v1.C_LG_XIX0814 | hypothetical protein (190 aa) | • | • | • | 0.922 | ||||||
| estExt_fgenesh4_pg.C_LG_I2289 | SubName- Full=Putative uncharacterized protein; (226 aa) | • | • | • | 0.917 | ||||||
| fgenesh4_pg.C_LG_XII000285 | hypothetical protein (261 aa) | • | • | • | 0.914 | ||||||
| eugene3.00150082 | SubName- Full=Putative uncharacterized protein; (261 aa) | • | • | • | 0.914 | ||||||
| grail3.0006058601 | 6-phosphogluconolactonase (EC-3.1.1.31) (266 aa) | • | • | • | 0.910 | ||||||
| estExt_Genewise1_v1.C_1290095 | ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa) | • | • | 0.909 | |||||||
| gw1.XIII.1456.1 | annotation not avaliable (242 aa) | • | • | 0.901 | |||||||
| gw1.70.218.1 | hypothetical protein (264 aa) | • | • | 0.900 | |||||||
| grail3.0176001401 | ribose-5-phosphate isomerase (EC-5.3.1.6) (271 aa) | • | 0.899 | ||||||||
| fgenesh4_pg.C_LG_XI001338 | hypothetical protein (285 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 474 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 0.0 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.0 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.0 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 0.0 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 1e-180 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 4e-71 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 3e-60 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 3e-57 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 3e-52 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 2e-51 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 4e-19 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 2e-09 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 4e-09 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-06 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 5e-06 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 2e-05 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 3e-05 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 3e-05 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 1e-04 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 993 bits (2568), Expect = 0.0
Identities = 397/483 (82%), Positives = 431/483 (89%), Gaps = 16/483 (3%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
L+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG+LPL+GF+DPE
Sbjct: 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPED 65
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
FV SIQKPR +I+LVKAGAPVD+TIK LS YME GDCIIDGGNEWYENTERR K AE G
Sbjct: 66 FVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG 125
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
LLYLGMGVSGGEEGAR+GPSLMPGGSFEAYK IEDIL KVAAQV D GPCVTY+ GG+G
Sbjct: 126 LLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQV-DDGPCVTYIGPGGAG 184
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
NFVKM+HNGIEYGDMQLI+EAYDVLKSVG L+NEEL VF EWNKGEL SFLIEITADIF
Sbjct: 185 NFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIF 244
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVE 293
+KDDKGDGYLVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI EERV
Sbjct: 245 SVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304
Query: 294 AAKVFKSGGF--GVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 351
AAKVFK G + ++ VDK++LIDDVRQALYASKICSYAQGMNLIRAKS+EKGW+L
Sbjct: 305 AAKVFKEAGLEDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLN 364
Query: 352 LGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAI 411
LGELARIWKGGCIIRAVFLDRIKKAYDRN DLA+LLVDPEFAKE+V+RQ+AWRRVV LAI
Sbjct: 365 LGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAI 424
Query: 412 NSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQ 471
N+GISTPGMS+SLAYFD+YRR RLPANLVQAQRDYFGAHTYER+D GSFHTEW K+A++
Sbjct: 425 NAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLARK 484
Query: 472 SKI 474
SKI
Sbjct: 485 SKI 487
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 770 bits (1991), Expect = 0.0
Identities = 267/461 (57%), Positives = 324/461 (70%), Gaps = 19/461 (4%)
Query: 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77
MG+NLALNIA G+ ++VYNRT K DE + K + E FV S++KPR I
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKI--VPAYTLEEFVASLEKPRKI 58
Query: 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137
+++VKAGAPVD I+ L +EKGD IIDGGN Y++T RREK +AE G+ ++GMGVSGG
Sbjct: 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118
Query: 138 EEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE 197
EEGA HGPS+MPGG EAY+ + IL K+AA+V D PCVTY+ G+G++VKM+HNGIE
Sbjct: 119 EEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIE 178
Query: 198 YGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYL 257
YGDMQLIAEAYD+LK L+ EE+ +VF EWNKGEL S+LIEITADI KD++ L
Sbjct: 179 YGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPL 238
Query: 258 VDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFG 304
VD +LDK G KGTGKWT Q A DL V I ++RV A+KV G
Sbjct: 239 VDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLS----G 294
Query: 305 VQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCI 364
+ DK + I+DVRQALYASKI SYAQG L+RA S E GWDL LGE+ARIW+GGCI
Sbjct: 295 PAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCI 354
Query: 365 IRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 424
IRA FL +I AY+ N DLANLL+DP F + + Q A RRVV LA+ +GI P SS+L
Sbjct: 355 IRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSAL 414
Query: 425 AYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
+Y+DSYR RLPANL+QAQRDYFGAHTYER D EG FHTEW
Sbjct: 415 SYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEW 455
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 717 bits (1852), Expect = 0.0
Identities = 269/469 (57%), Positives = 330/469 (70%), Gaps = 20/469 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IG+ GLAVMG NLALNIA+ G+ ++VYNRTT K DE + K ++ E FV
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNI--VPAYSIEEFVA 63
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++VKAG PVD I+ L +EKGD IIDGGN Y++T RR K ++E G+L+
Sbjct: 64 SLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILF 123
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+GMGVSGGEEGARHGPS+MPGG EAY+ + IL K+AA+V D PC T++ G+G+FV
Sbjct: 124 VGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKV-DGEPCCTWIGPDGAGHFV 182
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIK 249
KM+HNGIEYGDMQLIAEAYD+LK L+ EE+ VF EWNKGEL S+LIEITADI K
Sbjct: 183 KMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKK 242
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
D++G LVDK+LDK G KGTGKWTV A DL V I +ERV A+K
Sbjct: 243 DEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASK 302
Query: 297 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 356
V G DK++ I+DVRQALYASKI SYAQG L+RA S E GWDL LGE+A
Sbjct: 303 VLAGPKLGE----PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIA 358
Query: 357 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 416
IW+GGCIIR+ FLD+I A+D N +LANLL+ P F + + Q + RRVV A+ +GI
Sbjct: 359 LIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIP 418
Query: 417 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
P SS+L+Y+DSYR RLPANL+QAQRDYFGAHTYER D EG FHT W
Sbjct: 419 VPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNW 467
|
Length = 473 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 664 bits (1714), Expect = 0.0
Identities = 271/469 (57%), Positives = 340/469 (72%), Gaps = 16/469 (3%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IGL GLAVMGQNLALNIA +GF ISVYNRT K +E V++AK+ + G+ E VN
Sbjct: 4 IGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVN 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR +I+L+KAG VDETI L +EKGD IIDGGNEWY NTERR K E G+LY
Sbjct: 63 SLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILY 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
LGMGVSGGEEGAR+GPSLMPGG+ EAY +++DIL K +A+V DS PCVTYV G SG++V
Sbjct: 123 LGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDS-PCVTYVGPGSSGHYV 181
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIK 249
KM+HNGIEYGDMQLI+E+Y ++K + ++NEEL VF +WN+G L S+LIEITA I K
Sbjct: 182 KMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKK 241
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
DD G+ +LVDK+LD G KGTGKWTVQ+A + + PT+ EER +A+
Sbjct: 242 DDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASS 301
Query: 297 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 356
+G + DK+ IDD++ ALY SKI SY QG LI+ S E GW+L LGE+A
Sbjct: 302 HL-AGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIA 360
Query: 357 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 416
RIW+GGCIIRAVFLDRIK A+ +N L L +DP+F E+ ++Q +WR+VV +A +GI
Sbjct: 361 RIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIP 420
Query: 417 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
TP S+SLAY+ YR + LPANLVQAQRDYFGAHTY+R+D G+FHT W
Sbjct: 421 TPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNW 469
|
Length = 470 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 658 bits (1699), Expect = 0.0
Identities = 268/471 (56%), Positives = 322/471 (68%), Gaps = 22/471 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IG+ GLAVMG NLALN+A+ GF +SVYNRT K DE + K + G E FV
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKI--VGAYSIEEFVQ 59
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S+++PR I+++VKAGAPVD I L +EKGD IIDGGN Y +TERR K + G+L+
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR GPS+MPGGS EA+ + I K+AA+V D PC T++ G+G++V
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKV-DGEPCCTWIGPDGAGHYV 178
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIK 249
KM+HNGIEYGDMQLI EAYD+LK L+NEE+ VFTEWN GEL S+LIEITADI K
Sbjct: 179 KMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKK 238
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAK 296
D+ G LVDK+LD G KGTGKWT A DL V I EERV A+K
Sbjct: 239 DEDG-KPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASK 297
Query: 297 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 356
V SG + AVDK++ I+DVRQALYASKI SYAQG L+R S E GWDL LGE+A
Sbjct: 298 VL-SGPLAPEP--AVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIA 354
Query: 357 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 416
IW+GGCIIR+ FLD+I KA+ N DLANLL+ P F + D QS WRRVV LAI GI
Sbjct: 355 LIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIP 414
Query: 417 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS--FHTEW 465
P S++L+++D YR RLPANL+QAQRDYFGAHTYER D FHT W
Sbjct: 415 VPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNW 465
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 506 bits (1305), Expect = e-180
Identities = 183/294 (62%), Positives = 217/294 (73%), Gaps = 17/294 (5%)
Query: 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245
G++VKM+HNGIEYGDMQLIAEAYD+LK+V L+N+E+ +VF EWNKGEL S+LIEITADI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERV 292
KD+ G LVDK+LDK G KGTGKWTVQ A +L V P I EERV
Sbjct: 61 LRKKDEDG-KPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 293 EAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 352
A+KV + DK + I+DVRQALYASKI SYAQG L+RA S E GW+L L
Sbjct: 120 AASKVLSGPK---AAKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNL 176
Query: 353 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 412
GE+ARIW+GGCIIRA FLD+IK AY++N DL NLL+DP F KEI + Q +WRRVV +A+
Sbjct: 177 GEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVE 236
Query: 413 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
+GI P SS+L+Y+DSYR ERLPANL+QAQRDYFGAHTYER D EG FHT W
Sbjct: 237 AGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 4e-71
Identities = 101/285 (35%), Positives = 152/285 (53%), Gaps = 27/285 (9%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G+ GL MG N+A + G + Y+R E VE +EG G E V
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRN----PEAVEALAEEG---ATGADSLEELV 54
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ PRV+ ++V AG D TI L+ + GD +IDGGN +Y++ RR + +AE G+
Sbjct: 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDS----GPCVTYVSKGG 184
++ +G SGG G G LM GG EA + +E I +A + D GP G
Sbjct: 115 FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPV-------G 167
Query: 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITA 243
+G+FVKM+HNGIEYG MQ AE +++L++ + +L V W +G ++ S+L+++TA
Sbjct: 168 AGHFVKMVHNGIEYGMMQAYAEGFELLEASR--FDLDLAAVAEVWRRGSVIRSWLLDLTA 225
Query: 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288
D +D + V D G G+WTV++A DL+V AP I
Sbjct: 226 DAL--AEDPKLDEISGYVED----SGEGRWTVEEAIDLAVPAPVI 264
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-60
Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 20/280 (7%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
IG+ GL MG NL + + G + Y+ VE K EG + V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ----TAVEELKDEGATGA---ASLDELVA 55
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+ PR++ ++V AG D I L+ + GD +IDGGN Y+++ RR K +AE G+ +
Sbjct: 56 KLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
L +G SGG GA G LM GG EA + +E I +A + G Y GSG+FV
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA--PGEDG--YLYCGPSGSGHFV 171
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITADIFGI 248
KM+HNGIEYG MQ IAE +++LK+ + +L+ V WN G ++ S+L+++TA+ F
Sbjct: 172 KMVHNGIEYGMMQAIAEGFELLKNSP--FDYDLEAVAEVWNHGSVIRSWLLDLTAEAF-- 227
Query: 249 KDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288
K D L D++ + G G+WTV++A DL V AP I
Sbjct: 228 ---KKDPDL-DQISGRVSDSGEGRWTVEEALDLGVPAPVI 263
|
Length = 300 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 3e-57
Identities = 70/177 (39%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+IG GL VMG +ALN+ + G+ ++VYNRT KV+E V G P F
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEG-------AVGAASPAEF 53
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
V S V+I +V AGA VD I L ++ GD IIDG ++T RR K +AE
Sbjct: 54 VASA---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAE 110
Query: 125 LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
G+ +L VSGGEEGA G S+M GG EA++ ++ IL + A CVT+
Sbjct: 111 KGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGA-------CVTHY 160
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 3e-52
Identities = 98/285 (34%), Positives = 148/285 (51%), Gaps = 28/285 (9%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++GL GL MG N+A + E G + Y+ E V+ A K G E V
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ----EAVDVAGKLGITARHSL---EELV 54
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ ++ PR I ++V AG + IK L + GD ++DGGN Y++ RR + +AE G+
Sbjct: 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
Y+ G SGG G R+G LM GG E Y +E + +A P+ GP + GSG+F
Sbjct: 115 YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA---PE-GPGYVHAGPVGSGHF 170
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITADIFG 247
+KM+HNGIEYG MQ AE ++L + +++V W G ++ S+L+++T
Sbjct: 171 LKMVHNGIEYGMMQAYAEGLELLDKSDFDFD--VEDVARLWRNGSVIRSWLLDLTVKAL- 227
Query: 248 IKDD----KGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288
+D GY+ D G G+WTV++A +L+VAAP I
Sbjct: 228 -AEDPKLAGIKGYVND--------SGEGRWTVEEAIELAVAAPVI 263
|
Length = 299 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 2e-51
Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 21/281 (7%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++GL GL MG N+ +A++G Y+ V+ K++ + R+
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD----AVKAMKEDRTTGVANLRE---LS 54
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ PRV+ ++V G VD ++ L+ +EKGD +IDGGN +Y+++ RR K + E G+
Sbjct: 55 QRLSAPRVVWVMVPHGI-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
L G SGG G G M GG EA+ E + VA + G Y GSG+F
Sbjct: 114 LLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA--PEEQG--YLYCGPCGSGHF 169
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL-SFLIEITADIFG 247
VKM+HNGIEYG M IAE +++L++ + ++ V W +G ++ S+L+++TA F
Sbjct: 170 VKMVHNGIEYGMMAAIAEGFEILRN--SQFDFDIPEVARVWRRGSVIRSWLLDLTAIAF- 226
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288
+ D + + + G G+WTV A DL V AP I
Sbjct: 227 --RESPD---LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVI 262
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 20/205 (9%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+I GL +MG +A N+ + G ++VYNRT K E G P
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK---AAELLAAAG---ATVAASPAEA 54
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
VI ML A V + L ++ G +ID E A+A
Sbjct: 55 AAE--ADVVITMLP-DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA 111
Query: 125 LGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG 183
GL +L VSGG GA G ++M GG EA++ + +L + + +V
Sbjct: 112 KGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN-------IVHVGPV 164
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEAY 208
G+G K+ +N + G++ +AEA
Sbjct: 165 GAGQAAKLANNILLAGNIAALAEAL 189
|
Length = 286 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 27/214 (12%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG +++N+A+ G+ + V DE L G E+
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE----------LLAAGAVTAETAR 50
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYME---KGDCIIDGGNEWYENTERREKAMAEL 125
++ VI +V V+E + +E G ++D + ++R KA+ E
Sbjct: 51 QVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK 110
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
G+ YL VSGGE GA G S+M GG F+ K + + L G + V
Sbjct: 111 GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL----------GKNIVLVG 160
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215
G G K+ + I +++ ++EA G
Sbjct: 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAG 194
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG+ ++ N+ + G+ + VY+R V E + + +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA----------STAK 53
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYME---KGDCIIDGGNEWYENTERRE--KAMA 123
++ VII ++ V E + +E G +ID + RE A+
Sbjct: 54 AVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSS--IAPLASREIAAALK 111
Query: 124 ELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK 182
G+ L VSGGE A G S+M GG + D++ +A V +
Sbjct: 112 AKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS-------VVHTGD 164
Query: 183 GGSGNFVKM 191
G+GN K+
Sbjct: 165 IGAGNVTKL 173
|
Length = 296 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG +A+N+A G + V T V + +L G E+
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVAD---------ELLSLGAVSVETAR 50
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +I ++V V+E + + KG I+D + T+R + + EL
Sbjct: 51 QVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNEL 110
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
G YL VSGGE GAR G S+M GG FE K + ++L G +T V
Sbjct: 111 GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL----------GKNITLVG 160
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEA 207
G G K+ + I +++ ++EA
Sbjct: 161 GNGDGQTCKVANQIIVALNIEAVSEA 186
|
Length = 292 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 331 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390
+ A+G L++ +D L +A +W G +IR+ LD +A+ ++ DL +
Sbjct: 185 AIAEGFELLKNSP----FDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI---- 236
Query: 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPAN-LVQAQRDYFGA 449
V R V A++ G+ P ++ +L R++ A ++ A R+ FG
Sbjct: 237 ---SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGG 293
Query: 450 HTYERID 456
H ++ +
Sbjct: 294 HAVKKKN 300
|
Length = 300 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 331 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390
+YA+G L+ A +DL L +A +W+ G +IR+ LD A + L +
Sbjct: 186 AYAEGFELLEAS----RFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEI---- 237
Query: 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL-AYFDSYRRERLPAN-LVQAQRDYFG 448
V+ R V AI+ + P ++++L F S R+E A+ +V A R+ FG
Sbjct: 238 ---SGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRS-RQEDSFADKVVAALRNGFG 293
Query: 449 AHTYERID 456
H ++ +
Sbjct: 294 GHAVKKKE 301
|
Length = 301 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 331 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390
+ A+G ++R +D + E+AR+W+ G +IR+ LD A+ + DLA
Sbjct: 184 AIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF---- 235
Query: 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL-AYFDSYRRERLPANLVQAQRDYFGA 449
V R V AI+ G+ P +++SL + F S + ++ A R FG
Sbjct: 236 ---SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGG 292
Query: 450 HTYER 454
H ++
Sbjct: 293 HAEKK 297
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 21/199 (10%)
Query: 14 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQK 73
GL MG +A N+ + G P+ V++ V+E V + P + +
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPA----------EAAEG 52
Query: 74 PRVIIMLVKAGAPVDETIKT---LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130
+I ++ AG V + + KG +ID ++ + + A G +++
Sbjct: 53 ADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFM 112
Query: 131 GMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
VSGG GAR G + M GG E + E +L + + + G+G
Sbjct: 113 DAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN-------IVHCGDHGAGQAA 165
Query: 190 KMIHNGIEYGDMQLIAEAY 208
K+ +N + M AEA
Sbjct: 166 KICNNMLLGISMIGTAEAM 184
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 331 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390
+YA+G+ L+ +D + ++AR+W+ G +IR+ LD KA + LA +
Sbjct: 185 AYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI---- 236
Query: 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL-AYFDSYRRERLPANLVQAQRDYFGA 449
K V+ R V AI ++ P +++SL F S + +V A R+ FG
Sbjct: 237 ---KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293
Query: 450 HTYER 454
H +
Sbjct: 294 HAVKT 298
|
Length = 299 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 474 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.93 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.92 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.92 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.91 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.9 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.89 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.89 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.86 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.85 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.84 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.84 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.82 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.82 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.81 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.81 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.8 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.78 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.76 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.76 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.76 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.74 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.74 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.74 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.69 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.68 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.68 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.68 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.68 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.68 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.66 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.66 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.65 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.65 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.64 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.64 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.63 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.63 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.62 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.62 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.62 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.61 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.61 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.61 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.58 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.57 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.55 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.54 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.53 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.53 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.51 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.5 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.49 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.47 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.46 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.46 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.44 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.43 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.43 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.37 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.36 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.36 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.36 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.35 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.35 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.35 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.35 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.34 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.34 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.34 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.34 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.33 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.32 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.31 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.24 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.18 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.16 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.15 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.13 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.07 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.06 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.05 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.04 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.03 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.03 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.03 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.03 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.01 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.98 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.95 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.93 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.91 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.91 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.89 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.87 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.86 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.84 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.83 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.83 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.8 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.8 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.8 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.78 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.78 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.76 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.76 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.74 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.74 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.72 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.71 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.7 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.7 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.68 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.61 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.55 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.53 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.51 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.51 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.47 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.43 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.4 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.36 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.35 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.34 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.31 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.3 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.26 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.13 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.12 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.12 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.11 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.11 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.11 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.1 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.08 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.07 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.06 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.06 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.05 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.04 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.03 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.03 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.03 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 98.01 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.98 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.96 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.96 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.95 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.94 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.93 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.92 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.91 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.91 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.89 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.89 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.88 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.87 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.83 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.83 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.83 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.82 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.81 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.81 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.81 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.81 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.81 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.81 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.81 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.8 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.79 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.78 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.77 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.76 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.74 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.74 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.74 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.72 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.72 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.69 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.68 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.67 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.65 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.63 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.62 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.61 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.61 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.59 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.58 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.58 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.56 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.56 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.54 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.53 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.52 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.51 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.49 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.49 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.44 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.41 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.4 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.4 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.36 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.32 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.29 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.29 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.29 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.27 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.25 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.25 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.24 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.22 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.18 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.18 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.17 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.16 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.16 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.15 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.14 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.13 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.13 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.12 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.12 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.08 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 97.06 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.05 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.99 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.97 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.96 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.93 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.93 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.91 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.9 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.89 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.88 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.87 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.87 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.84 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.82 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.82 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.81 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.81 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.78 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.78 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.77 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.76 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.74 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 96.7 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.68 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.67 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.66 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.66 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.65 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.65 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.64 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.62 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.62 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.61 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.6 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.6 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.59 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.59 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.56 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.55 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.53 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.52 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.51 | |
| PLN00106 | 323 | malate dehydrogenase | 96.5 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.49 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.49 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.48 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.47 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.45 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.41 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.38 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.37 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.35 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.35 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.35 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.33 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.33 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.33 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.32 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.32 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.32 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.29 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.27 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.24 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 96.24 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.24 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.23 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.19 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.19 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.14 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.14 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.13 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.13 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.1 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.09 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.07 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 96.01 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.98 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.97 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.95 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.93 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.93 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.91 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.91 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.9 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.9 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.88 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.87 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.87 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.87 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.86 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.84 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.84 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.83 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.8 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.79 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.79 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.78 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.76 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.76 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.73 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.73 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 95.71 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.7 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.7 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.69 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.69 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.67 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.66 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.64 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.63 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.62 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.62 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.61 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.58 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.5 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.5 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.5 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.44 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.43 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.4 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.4 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.38 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.38 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.37 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 95.36 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.35 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.35 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.35 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.33 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.3 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.29 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.29 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.28 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.28 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.27 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.27 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.27 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.22 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.21 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 95.19 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.18 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.18 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 95.17 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.15 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.15 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.08 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 95.07 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 95.06 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.04 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.02 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.01 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.0 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.98 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.95 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.94 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.93 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.92 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.91 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 94.91 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.9 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.9 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.88 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.85 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 94.83 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.82 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.82 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 94.81 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.77 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.76 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.75 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.75 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.74 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.73 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.7 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.69 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.68 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.68 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.67 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.67 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.65 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.64 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.64 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.64 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.64 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.63 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 94.62 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.62 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.61 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.58 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 94.57 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.56 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.55 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 94.54 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.47 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.46 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.46 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.43 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.42 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.39 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.38 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.38 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.36 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 94.32 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.28 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 94.28 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.28 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.28 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.26 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.25 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 94.25 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.25 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.24 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 94.22 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.21 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.21 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.2 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.2 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 94.2 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 94.19 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.18 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.18 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.17 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 94.15 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 94.12 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.11 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.09 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.07 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.07 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.06 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 94.05 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 94.01 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 93.97 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 93.96 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.92 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 93.92 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 93.91 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 93.91 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 93.9 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.89 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.85 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.84 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-124 Score=903.62 Aligned_cols=456 Identities=59% Similarity=0.966 Sum_probs=437.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+.||+||+|.||++||+|++++||.|.+|||++++++++.+..... .++.++.|++|+++.|++|+.|+++|..+..
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~--k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKG--KNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccC--CCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 45799999999999999999999999999999999999998865432 2688999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++.++++|+|+|.+|+||||.+|+.+.+|.++.+.|.++|++|++++||||+++|++||+||+||++++|+.+.|+|.++
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 246 (474)
+++. +++|||.|+|+.|+||+||||||+|+|+.||+|+|+|.+++...|++.+++.++|..||++.++|||++|+.++|
T Consensus 161 aAk~-~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 161 AAKV-DGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred Hhhc-CCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 9997 599999999999999999999999999999999999999999666999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccch
Q 011931 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDK 313 (474)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
+.+|+.++.+++|.|+|.++|||||+|+++.|.++|+|+|+| ++|+.++++|++|... .+.+.
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~----~~~dk 315 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG----EPGDK 315 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC----CCCCH
Confidence 998866666999999999999999999999999999999999 8899999999887431 25688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHH
Q 011931 314 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 393 (474)
Q Consensus 314 ~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~ 393 (474)
..|++.|++|+++++|++|+|||.+|+++|++|+|+|++.+|++|||+||||||.||+.|.++|.++|++.||+++|+|.
T Consensus 316 ~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~pyF~ 395 (473)
T COG0362 316 EEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFK 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccccCC
Q 011931 394 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIA 469 (474)
Q Consensus 394 ~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~~ 469 (474)
..+++.+.+||++|..|++.|+|+|++++||+|||+||++++|+|||||||||||||||+|+|++|.||++|.+..
T Consensus 396 ~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 396 SILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998643
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-116 Score=836.18 Aligned_cols=463 Identities=61% Similarity=0.989 Sum_probs=439.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++||+||++.||++|+.|.+++||.|.+|||+.++++++.+...+ +..+....|++|++..|++|++|++.|+.+++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--~~~i~ga~S~ed~v~klk~PR~iillvkAG~p 83 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--GTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP 83 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--CCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc
Confidence 4689999999999999999999999999999999999999876543 23577889999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++..+++|.|+|.+|++|||.+|+.+.+|.++.+++.++|+-|++++||||+++|+.||++|+||++++|..++++|..+
T Consensus 84 VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~i 163 (487)
T KOG2653|consen 84 VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKI 163 (487)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 246 (474)
++++.+++|||.|+|+.|+||+||||||+|+|+.||+|+|+|.++++.+|++.+++.++|..||.+.+.||+++|+.+|+
T Consensus 164 aakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIl 243 (487)
T KOG2653|consen 164 AAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADIL 243 (487)
T ss_pred HHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHh
Confidence 99988999999999999999999999999999999999999999999766999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccch
Q 011931 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDK 313 (474)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
+.+|+ .+.+++++|+|..+|||||+|++..|.++|+|+|+| +||+.++|.+.+|.... ......
T Consensus 244 k~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--~~~~~k 320 (487)
T KOG2653|consen 244 KFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--DMGDDK 320 (487)
T ss_pred heecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch--hhhhHH
Confidence 98775 344899999999999999999999999999999999 89999999999885410 122247
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHH
Q 011931 314 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 393 (474)
Q Consensus 314 ~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~ 393 (474)
..|++++++|+|+++|++|+|||.||++++++++|+||+..|+++||+||||||.||+.|.++|+++|+|.|+++|+.|.
T Consensus 321 ~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF~ 400 (487)
T KOG2653|consen 321 KQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFA 400 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCC-ccccccccCCCCC
Q 011931 394 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG-SFHTEWFKIAKQS 472 (474)
Q Consensus 394 ~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~-~~h~~w~~~~~~~ 472 (474)
.++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++|++++.++
T Consensus 401 ~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~~ 480 (487)
T KOG2653|consen 401 KAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGNV 480 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999987777
Q ss_pred CC
Q 011931 473 KI 474 (474)
Q Consensus 473 ~~ 474 (474)
+|
T Consensus 481 s~ 482 (487)
T KOG2653|consen 481 SS 482 (487)
T ss_pred cc
Confidence 64
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-110 Score=864.51 Aligned_cols=456 Identities=59% Similarity=0.998 Sum_probs=425.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+..... +..+..+.+++|+++.|+++|+||+|||++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEG-NTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhc-CCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 46899999999999999999999999999999999999988753221 11245788999999877779999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~-~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 245 (474)
+.+. +++||++|+|+.|+||++||+||+++|++|++++|++.+++ +.| ++++++.++++.|+.+.+.||+++++.++
T Consensus 160 a~~~-~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 160 SAKV-GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred hhhc-CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9874 78899999999999999999999999999999999999998 577 99999999999999999999999999999
Q ss_pred ccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccc
Q 011931 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVD 312 (474)
Q Consensus 246 l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~ 312 (474)
+.++|+.++++.+|.|.|.++|||||+|++++|.++|||+|++ ++|..+++++.+|... .++...+
T Consensus 238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~-~~~~~~~ 316 (470)
T PTZ00142 238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPA-NKTETED 316 (470)
T ss_pred hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccc-ccccccc
Confidence 9987653335899999999999999999999999999999999 7788888888876310 0011236
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHH
Q 011931 313 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 392 (474)
Q Consensus 313 ~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~ 392 (474)
++||+|+|||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccc
Q 011931 393 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466 (474)
Q Consensus 393 ~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 466 (474)
...+++..+.|||+|..|++.|+|+|++++||+||++|+++++|+|+|||||||||+|+|+|+|++|.||++|+
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-109 Score=860.14 Aligned_cols=468 Identities=85% Similarity=1.318 Sum_probs=432.2
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||||+|.||.+||+||+++||+|++|||++++++++.+.....|...+..+.+++|+++.|++||+||+|||+
T Consensus 3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 3 SAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA 82 (493)
T ss_pred CCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence 34567899999999999999999999999999999999999988742111100234678999999988889999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll 163 (474)
++++++|++++.+.+.+|++|||+||+.|.+++++.+.++++|++|+++||+||+++|+.|+++|+||+++++++++|+|
T Consensus 83 ~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL 162 (493)
T PLN02350 83 GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDIL 162 (493)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~-G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
+.++.+. +++||++|+|+.|+||++||+||+++++.+++++|++.++++. | ++++++.++|+.|+.+.+.||+++++
T Consensus 163 ~~ia~k~-~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei~ 240 (493)
T PLN02350 163 EKVAAQV-DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEIT 240 (493)
T ss_pred HHHhhhc-CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHHH
Confidence 9999886 7789999999999999999999999999999999999999995 8 99999999999999999999999999
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCC--C
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQ--S 307 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~--~ 307 (474)
.+++..+++++++|.++.++||++|||||+|+++.|.++|+|+|++ ++|..+++++++|..... .
T Consensus 241 ~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~~~~ 320 (493)
T PLN02350 241 ADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDILSA 320 (493)
T ss_pred HHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccccccc
Confidence 9998776667778999999999999999999999999999999996 889999999987521100 0
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCc
Q 011931 308 NQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLL 387 (474)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll 387 (474)
....+...|++.|++|+|+++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|++
T Consensus 321 ~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~ 400 (493)
T PLN02350 321 DSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLL 400 (493)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhc
Confidence 01234578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCcccccccc
Q 011931 388 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467 (474)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 467 (474)
+++.|.+.+.+..++|||+|+.|++.|+|+|++++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|++
T Consensus 401 ~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 480 (493)
T PLN02350 401 VDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTK 480 (493)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 011931 468 IAKQSK 473 (474)
Q Consensus 468 ~~~~~~ 473 (474)
.+..++
T Consensus 481 ~~~~~~ 486 (493)
T PLN02350 481 LARKSK 486 (493)
T ss_pred hcCccc
Confidence 666554
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-108 Score=849.83 Aligned_cols=442 Identities=60% Similarity=0.984 Sum_probs=417.4
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHh
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSA 96 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~ 96 (474)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++|++++|++||+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3111 3678899999999888899999999999999999999999
Q ss_pred cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCc
Q 011931 97 YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176 (474)
Q Consensus 97 ~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~ 176 (474)
.+.+|++|||+||+.|.++.++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.++.++.+++||
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987689999
Q ss_pred eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCc
Q 011931 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDG 255 (474)
Q Consensus 177 ~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~-~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~ 255 (474)
+.|+|+.|+||++||+||+++|+.|++++|++.++++ .| ++++++.++|+.|+.+.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 78 999999999999999999999999999999876522556
Q ss_pred chHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchhhHHHHHHH
Q 011931 256 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQ 322 (474)
Q Consensus 256 ~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (474)
+.+|.|+|.++|||||+|++++|.++|||+|+| ++|..+++++.+|.. ....+.+||+|||||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~----~~~~~~~~~i~~v~~ 312 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA----KFEGDKAEFIEDVRQ 312 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC----cccccHHHHHHHHHH
Confidence 899999999999999999999999999999999 789898888876632 112356899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhh
Q 011931 323 ALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSA 402 (474)
Q Consensus 323 ~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 402 (474)
||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++.|...+++..+.
T Consensus 313 al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~ 392 (459)
T PRK09287 313 ALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDA 392 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCcccccccc
Q 011931 403 WRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467 (474)
Q Consensus 403 ~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 467 (474)
|||+|..|+++|+|+|++++||+||++++++++|+|||||||||||+|+|+|+|++|.||++|++
T Consensus 393 ~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 393 LRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999975
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-107 Score=845.09 Aligned_cols=450 Identities=59% Similarity=0.973 Sum_probs=420.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.. +.++..+.+++++++.|++||+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~--g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAK--GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccC--CCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 49999999999999999999999999999999999998875211 0024567889999988888999999999999999
Q ss_pred HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHhc
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 168 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg~ 168 (474)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+++|+.|+++|+||+++++++++|+|+.++.
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 169 QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 169 ~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~-~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
++ +++||++|+|+.|+||++||+||++++++|++++|++.+++ +.| ++++++.++++.|+.+.++||+++++.+++.
T Consensus 159 ~~-~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 159 KV-DGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hc-CCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 85 67899999999999999999999999999999999999996 587 9999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchh
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQ 314 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
++|+ .+.+++|.|+|.++|||||+|++++|.++|||+|+| ++|..+++++.+|... ....+.+
T Consensus 237 ~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~---~~~~~~~ 312 (467)
T TIGR00873 237 KKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP---EPAVDKE 312 (467)
T ss_pred ccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc---cccccHH
Confidence 8764 445899999999999999999999999999999999 7788888888765320 0113558
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHH
Q 011931 315 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 394 (474)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~ 394 (474)
||+|||||||||++|++|+|||+||+++|++|+|++||.+|++|||+||||||+||+.|.++|+++|+++||++|+.|..
T Consensus 313 ~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~ 392 (467)
T TIGR00873 313 EFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKD 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCC--ccccccc
Q 011931 395 EIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG--SFHTEWF 466 (474)
Q Consensus 395 ~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~--~~h~~w~ 466 (474)
.+++..++|||+|..|++.|+|+|++|+||+||++|+++++|+|+|||||||||+|+|+|+|++| .||++|+
T Consensus 393 ~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 393 ALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999996
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-81 Score=599.34 Aligned_cols=278 Identities=64% Similarity=1.042 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhc
Q 011931 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 265 (474)
Q Consensus 186 g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~ 265 (474)
||+||||||+|+|++||+++|++.++++..|++++++.++|+.||++.++|||++++.++++++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999975559999999999999999999999999999999876 56779999999999
Q ss_pred CCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 011931 266 GMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSY 332 (474)
Q Consensus 266 ~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 332 (474)
+|||||+|++++|.++|||+|++ ++|.++++.+++|... .....+...|+++|++|++++++++|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~--~~~~~~~~~~i~~l~~Aly~~~i~~y 157 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKF--DESKEDKEEFIEDLRKALYAAKIISY 157 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-S--TTS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccccc--ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 8899999999886421 12345678899999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHHHHHHH
Q 011931 333 AQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 412 (474)
Q Consensus 333 aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v~~a~~ 412 (474)
+|||+||+++|++|+|++|+++|++|||+||||||.||+.|.++|+++|++.||++++.|.+.+++..++|||+|..|++
T Consensus 158 aQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai~ 237 (291)
T PF00393_consen 158 AQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAIE 237 (291)
T ss_dssp HHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccc
Q 011931 413 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466 (474)
Q Consensus 413 ~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 466 (474)
.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 238 ~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 238 AGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred cCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=438.73 Aligned_cols=298 Identities=28% Similarity=0.509 Sum_probs=270.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+||+||||.||.+|+++|.+.||+|.+||+|++.++++...+ ++.++|++++++.|..+++|.++||.+..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 6899999999999999999999999999999999999998765 467889999999999999999999999899
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.|.+|++|||.+|+.+.++.++.+.++++|++|+|++.|||..+++.|.++|+|||+++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
. | ..|
T Consensus 154 ~---------------g----------------------------e~G-------------------------------- 158 (300)
T COG1023 154 P---------------G----------------------------EDG-------------------------------- 158 (300)
T ss_pred c---------------C----------------------------cCc--------------------------------
Confidence 2 1 001
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
|. + .-+.++|||+|||||+|||+
T Consensus 159 ----yl--------------------------------------------~---------~Gp~GsGHfvKMVHNGIEYG 181 (300)
T COG1023 159 ----YL--------------------------------------------Y---------CGPSGSGHFVKMVHNGIEYG 181 (300)
T ss_pred ----cc--------------------------------------------c---------ccCCCcchhHHHHhccHHHH
Confidence 00 0 01457899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
+||+|+|||+||+++ +|++|+++|+++||.|++||||||+.+.++|+++++|+.+- ..+.+ ++++ ||+|
T Consensus 182 mM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v~d---SGEG--rWTv 250 (300)
T COG1023 182 MMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRVSD---SGEG--RWTV 250 (300)
T ss_pred HHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Ceecc---CCCc--eeeh
Confidence 999999999999974 78899999999999999999999999999999998875543 33333 5677 9999
Q ss_pred HHHHHcCCChHHHHHHHH-HHHhhcCCCchhHHHHHHhhccCCccceec
Q 011931 408 CLAINSGISTPGMSSSLA-YFDSYRRERLPANLVQAQRDYFGAHTYERI 455 (474)
Q Consensus 408 ~~a~~~gip~p~~~~al~-y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 455 (474)
++|+++|+|+|+|+.||+ +|.|.+...+..+++.|+|+.||+|..+++
T Consensus 251 ~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 251 EEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred HHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 999999999999999995 999999999999999999999999998765
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=435.60 Aligned_cols=296 Identities=29% Similarity=0.502 Sum_probs=259.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||.+|+++||+|.+|||++++++++.+.+ ...+.+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 5899999999999999999999999999999999999888654 345578888887666799999999998 99
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.+.+|++|||+||+.|.++.++.+.++++|++|+++||+||+.+++.|.++|+||+++++++++++|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888655
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
.+. +.++|+|
T Consensus 153 ~~~----~~~~~~G------------------------------------------------------------------ 162 (298)
T TIGR00872 153 PEE----QGYLYCG------------------------------------------------------------------ 162 (298)
T ss_pred CcC----CCEEEEC------------------------------------------------------------------
Confidence 210 0001110
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
+.++++++|++||+++++
T Consensus 163 --------------------------------------------------------------~~G~~~~~K~~~n~l~~~ 180 (298)
T TIGR00872 163 --------------------------------------------------------------PCGSGHFVKMVHNGIEYG 180 (298)
T ss_pred --------------------------------------------------------------CccHhHHHHHHHHHHHHH
Confidence 124567889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHH-HhhhhhHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEI-VDRQSAWRRV 406 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~~~~~~~ 406 (474)
+|++|+|||.|++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |...+ +++++ ||+
T Consensus 181 ~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~--r~~ 248 (298)
T TIGR00872 181 MMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------FSGRVSDSGEG--RWT 248 (298)
T ss_pred HHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------HHHHHHhhccH--HHH
Confidence 999999999999975 999999999999999999999999999999998875433 55443 44445 999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhcCC-CchhHHHHHHhhccCCccceec
Q 011931 407 VCLAINSGISTPGMSSSLAYFDSYRRE-RLPANLVQAQRDYFGAHTYERI 455 (474)
Q Consensus 407 v~~a~~~gip~p~~~~al~y~~~~~~~-~~~~~~i~a~rd~fG~h~~~r~ 455 (474)
|++|+++|+|+|++++||.|++.++++ ++|+|+|||||||||+|+|+++
T Consensus 249 v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~~ 298 (298)
T TIGR00872 249 VIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKKK 298 (298)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCCC
Confidence 999999999999999999999988888 9999999999999999999873
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=381.69 Aligned_cols=299 Identities=30% Similarity=0.521 Sum_probs=252.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||++|+++|++|++|||++++.+++.+.+ +..+.+++|+++.++.+|+||+++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 5899999999999999999999999999999999998886543 567789999988644479999999998789
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.+.+|++|||+||+.|..++++.+.++++|++|+|+||+|++.+++.|.++|+||+++++++++++|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
.+. +..++|+|+.|+|+.
T Consensus 154 ~~~---~~~~~~~G~~G~g~~----------------------------------------------------------- 171 (301)
T PRK09599 154 PRA---EDGYLHAGPVGAGHF----------------------------------------------------------- 171 (301)
T ss_pred ccc---cCCeEeECCCcHHHH-----------------------------------------------------------
Confidence 721 012567666554443
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
+|+++|+++++
T Consensus 172 ---------------------------------------------------------------------~Kl~~n~l~~~ 182 (301)
T PRK09599 172 ---------------------------------------------------------------------VKMVHNGIEYG 182 (301)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 35555566666
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
.+++|+|+|.++++ ++|++|+++++++|+.||+++|++++....++.+++.+ +.+...++. ...+||++
T Consensus 183 ~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~~~~~kd-~~~~~~~~ 251 (301)
T PRK09599 183 MMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEISGYVED-SGEGRWTV 251 (301)
T ss_pred HHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHHHHHHHh-hCcHHHHH
Confidence 66777777777665 57889999999999999988999999998988766432 112222222 44459999
Q ss_pred HHHHHcCCChHHHHHHHHH-HHhhcCCCchhHHHHHHhhccCCccceec
Q 011931 408 CLAINSGISTPGMSSSLAY-FDSYRRERLPANLVQAQRDYFGAHTYERI 455 (474)
Q Consensus 408 ~~a~~~gip~p~~~~al~y-~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 455 (474)
+.|.+.|+|+|++++++.| +.++....+|.+++|+||||||+|+|+|+
T Consensus 252 ~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 252 EEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 9999999999999999986 99999999999999999999999999996
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=361.71 Aligned_cols=255 Identities=26% Similarity=0.387 Sum_probs=238.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+||||||+|.||.+||.||.++||+|++|||++++..+ +.+.+ ...+.++.|++.. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 58999999999999999999999999999999999444 44434 4678899999998 9999999999999
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
+++|+ +++.+.+++|.+|||+||++|..++++.+.++++|++|+|+|||||+.++..|+ +||+||+++.+++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.+|.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++ ..+..+||.++.+
T Consensus 151 l~~~g~~-------i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~ 219 (286)
T COG2084 151 LEAMGKN-------IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENY 219 (286)
T ss_pred HHHhcCc-------eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhh
Confidence 9999987 599999999999999999999999999999999999999 9999999998 6778899999999
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
.+.+..++ |.|+|.++.+.||++ ++.+.|++.|+|+|+...
T Consensus 220 ~~~m~~~~-~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~ 260 (286)
T COG2084 220 GPRMLEGD-FSPGFAVDLMLKDLG------LALDAAKELGAPLPLTAL 260 (286)
T ss_pred cchhhcCC-CCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHH
Confidence 88777654 999999999999998 999999999999999943
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=362.17 Aligned_cols=297 Identities=33% Similarity=0.544 Sum_probs=243.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||.+|+++|++|++|||++++.+++.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4899999999999999999999999999999999988876543 456789999987644469999999998889
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.+++|++|||+||+.|.+++++.+.+.++|++|+++||+|++.+++.|.++|+||+++++++++++|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 247 (474)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.|
T Consensus 154 ~~~----~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g-------------------------------- 197 (299)
T PRK12490 154 PEG----PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSD-------------------------------- 197 (299)
T ss_pred CcC----CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------------------------
Confidence 621 24799999999999999999999999999888877766543
Q ss_pred ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 011931 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 327 (474)
T Consensus 198 -------------------------------------------------------------------------------- 197 (299)
T PRK12490 198 -------------------------------------------------------------------------------- 197 (299)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
|++|+++++++|+.||+++|++++...+.+.+++.. +.+ +...|-.+..+|++
T Consensus 198 --------------------~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~l-~~~~KD~~~~~l~~ 250 (299)
T PRK12490 198 --------------------FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKL------AGI-KGYVNDSGEGRWTV 250 (299)
T ss_pred --------------------cCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCCh------hhh-hHHHHhcCcHHHHH
Confidence 233444444455544455555555544444332110 001 11111222338899
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCch-hHHHHHHhhccCCcccee
Q 011931 408 CLAINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYER 454 (474)
Q Consensus 408 ~~a~~~gip~p~~~~al~y~~~~~~~~~~-~~~i~a~rd~fG~h~~~r 454 (474)
+.|.+.|+|+|.+++++.|+.....+++| .+.+|+||||||+|+|+.
T Consensus 251 ~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 251 EEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAVKT 298 (299)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999888888999999 999999999999999974
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=326.12 Aligned_cols=261 Identities=22% Similarity=0.329 Sum_probs=241.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++++|||||+|.||.+|+.+|.++||+|++|||+.++.++|.+.+. ..+.+|.|+++. +|+||.|||++.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~ 103 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPK 103 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChH
Confidence 4678999999999999999999999999999999999999998774 678999999999 999999999999
Q ss_pred hHHHHHH---HHHhcccCCCEE-EecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 86 PVDETIK---TLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 86 ~v~~vl~---~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
++++++. +++..+.+|... ||.||+.|..++++.+.+..++..|+|+|||||..+|++|. +||+|||++.++++.
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~ 183 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAAS 183 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHH
Confidence 9999993 466667788777 99999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHh
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~ 240 (474)
++|+.+|++ ++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|...+.+++ +.|...|+.+.
T Consensus 184 ~~~~~mGk~-------~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~ 252 (327)
T KOG0409|consen 184 PVFKLMGKN-------VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFY 252 (327)
T ss_pred HHHHHhcce-------EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHh
Confidence 999999976 699999999999999999999999999999999999999 9999999998 56888899999
Q ss_pred hhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHH
Q 011931 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEA 294 (474)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~ 294 (474)
...+.+.+++ |.|+|.++.+.||++ ++...|.+.++|+|+.....+.
T Consensus 253 ~~~p~m~k~d-y~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA~ql 299 (327)
T KOG0409|consen 253 NPVPGMLKGD-YNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLAHQL 299 (327)
T ss_pred CcCchhhcCC-CCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHHHHH
Confidence 9888777655 999999999999998 8999999999999999443333
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=324.39 Aligned_cols=252 Identities=23% Similarity=0.337 Sum_probs=228.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|.||.+||++|+++||+|++|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 45555432 4567789998887 99999999999889
Q ss_pred HHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 88 DETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 88 ~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
++++. ++.+.+.+|++|||+||+.|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (474)
+.++.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.
T Consensus 150 ~~~g~~-------~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~ 218 (292)
T PRK15059 150 ELLGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 218 (292)
T ss_pred HHHcCC-------cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhc
Confidence 999976 589999999999999999999999999999999999999 9999999987 56778899999888
Q ss_pred ccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 244 ~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.+..+ +|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 219 ~~~~~~-~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~ 256 (292)
T PRK15059 219 ERMIKR-TFNPGFKIALHQKDLN------LALQSAKALALNLPNT 256 (292)
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 776653 5889999999999998 9999999999999988
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=316.80 Aligned_cols=254 Identities=20% Similarity=0.259 Sum_probs=226.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...+.++.++++. +|+||+|+|+..+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~ 70 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDL 70 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHH
Confidence 35899999999999999999999999999999999998887654 3567788888887 9999999999877
Q ss_pred HHHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++. ++.+.+++|.++||+||..|.+++++.+.+.++|+.|+|+||+|++..+..|. ++|+||+++.+++++++
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~ 150 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPI 150 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHH
Confidence 888873 56777889999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.+|.+ ++++|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++ +.+...++.+...
T Consensus 151 l~~~g~~-------~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l---~~~~~~~~~~~~~ 219 (296)
T PRK15461 151 LMAMGNE-------LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVM---SGTAAGKGHFTTT 219 (296)
T ss_pred HHHHcCC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccChHHHcc
Confidence 9999976 599999999999999999999999999999999999999 9999999988 3444445555444
Q ss_pred c-ccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 243 A-DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 243 ~-~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
. +.+.. ++|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 220 ~~~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~ 259 (296)
T PRK15461 220 WPNKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLG 259 (296)
T ss_pred ccchhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHH
Confidence 3 34444 35889999999999998 9999999999999988
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=360.52 Aligned_cols=254 Identities=17% Similarity=0.243 Sum_probs=236.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..+|||||+|.||.+||.+|+++||+|.+|||++++.+++.+.+ ...++|+.|++++ ||+||+|+|++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 45799999999999999999999999999999999999998765 4578899999998 9999999999999
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEecCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
+++|+ +++++.+.+|++|||+||..|..++++.+.+.++| +.|+|+||+||+.+++.|. ++|+||+++.+++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 56888889999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhH
Q 011931 161 DILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLI 239 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~-~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~ 239 (474)
|+|+.+|.+ +++ +|+.|+|+.+|+++|.+.+..+++++|++.++++.| ++++.+.+++ +.+.+.||++
T Consensus 154 p~l~~~g~~-------i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~ 222 (1378)
T PLN02858 154 PFLSAMCQK-------LYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIF 222 (1378)
T ss_pred HHHHHhcCc-------eEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHH
Confidence 999999976 355 599999999999999999999999999999999999 9999999998 6777889999
Q ss_pred hhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 240 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.+.+.+..+ +|.++|.++.+.||++ ++++.|.+.|+|+|+.
T Consensus 223 ~~~~~~~~~~-d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~ 264 (1378)
T PLN02858 223 KNHVPLLLKD-DYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLL 264 (1378)
T ss_pred HhhhhHhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 9888766654 5889999999999998 9999999999999998
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=308.23 Aligned_cols=249 Identities=22% Similarity=0.293 Sum_probs=225.6
Q ss_pred EEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHH
Q 011931 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETI 91 (474)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl 91 (474)
|||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.+++++ +|+||+|||++.+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887644 4567789999888 999999999987889998
Q ss_pred ---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHHHh
Q 011931 92 ---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 92 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++.+.+.+|++|||+||..|..++++.+.++++|++|+++||+|++.++..|. .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 688888899999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc--
Q 011931 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-- 245 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~-- 245 (474)
.+ ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||....+.+.
T Consensus 151 ~~-------~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~ 219 (288)
T TIGR01692 151 RN-------IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPG 219 (288)
T ss_pred CC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCcc
Confidence 76 599999999999999999999999999999999999999 9999999998 5666778877655431
Q ss_pred -----ccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 246 -----FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 246 -----l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.. ++|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 220 ~~~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~ 260 (288)
T TIGR01692 220 VMPQAPAS-NGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLG 260 (288)
T ss_pred cccccccc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHH
Confidence 122 45888999999999998 9999999999999988
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=298.83 Aligned_cols=254 Identities=20% Similarity=0.300 Sum_probs=228.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|+|||||+|.||.++|.+|+++|++|.+|||++++.+++.+.+ ...++++++++++ +|+||+|+|+..+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 56899999999999999999999999999999999988776543 4566788898887 9999999998888
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++ +++.+.+.+|++|||+||..|.+++++.+.+..+|++|+++||+|++..+..|. .+++||+++.+++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 467888899999999999999999999999998999999999999999999998 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.++.+ ++++|+.|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+.+.|++++.+
T Consensus 152 l~~~~~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 152 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHhcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 9999976 488999999999999999999999999999999999999 9999998887 5677778888887
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.+.+..+ +|.++|.++...||++ .+++.|++.|+|+|++
T Consensus 221 ~~~~~~~-d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~ 259 (296)
T PRK11559 221 APMVMDR-NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLT 259 (296)
T ss_pred chHhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 7666543 4788999999999997 8999999999999987
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=295.96 Aligned_cols=253 Identities=21% Similarity=0.330 Sum_probs=228.7
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
||||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...++++++++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998887654 3456788888887 999999999987888
Q ss_pred HHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHH
Q 011931 89 ETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILL 164 (474)
Q Consensus 89 ~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~ 164 (474)
.++ .++.+.+.++.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+++||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 456777889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011931 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (474)
Q Consensus 165 ~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (474)
.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+.+.|++++.+.+
T Consensus 151 ~lg~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~ 219 (291)
T TIGR01505 151 ALGKN-------IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGE 219 (291)
T ss_pred HhcCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhCh
Confidence 99976 589999999999999999999999999999999999999 9999999998 456678898888877
Q ss_pred cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 245 ~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
.+..+ +|.++|.++.+.||+. ++.+.|++.|+++|+.+
T Consensus 220 ~~~~~-~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~ 257 (291)
T TIGR01505 220 RVIDR-TFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTA 257 (291)
T ss_pred hhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHH
Confidence 66554 4888999999999998 89999999999999883
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=336.43 Aligned_cols=256 Identities=18% Similarity=0.226 Sum_probs=233.1
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+.+++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...+.+++++++. ||+||+|||++
T Consensus 322 ~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~ 391 (1378)
T PLN02858 322 KPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANE 391 (1378)
T ss_pred cCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCCh
Confidence 4457899999999999999999999999999999999998887654 3457789999988 99999999999
Q ss_pred hhHHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEecCCCCCcccccCCC-ccccCCCHHHHHH
Q 011931 85 APVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKY 158 (474)
Q Consensus 85 ~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~ 158 (474)
.++++++ .++.+.+.+|++|||+||+.|..++++.+.+++ +|++|+++||+||+.++..|. ++|+||+++.+++
T Consensus 392 ~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~ 471 (1378)
T PLN02858 392 VQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKS 471 (1378)
T ss_pred HHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHH
Confidence 8999998 457788889999999999999999999999988 899999999999999999999 9999999999999
Q ss_pred HHHHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhh
Q 011931 159 IEDILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSF 237 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~-~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~ 237 (474)
++++|+.++.+ +++ .|+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++.+.+++ +.+.+.||
T Consensus 472 ~~plL~~lg~~-------i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~ 540 (1378)
T PLN02858 472 AGSVLSALSEK-------LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSW 540 (1378)
T ss_pred HHHHHHHHhCc-------EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCh
Confidence 99999999976 466 467999999999999999999999999999999999 9999999998 56677889
Q ss_pred hHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 238 LIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+++.+.+.+..+ +|+++|.++.+.||++ ++.+.|.+.|+|+|+.
T Consensus 541 ~~~~~~~~~l~~-d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~ 584 (1378)
T PLN02858 541 MFENRVPHMLDN-DYTPYSALDIFVKDLG------IVSREGSSRKIPLHLS 584 (1378)
T ss_pred hhhhccchhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 888777666554 5889999999999998 8999999999999998
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=241.71 Aligned_cols=154 Identities=28% Similarity=0.460 Sum_probs=138.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ +..+.|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 68999999999999999999999999999999999999998765 5788999999999 9999999999999
Q ss_pred HHHHHHH--HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 87 VDETIKT--LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 87 v~~vl~~--l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
+++++.+ +.+.+.+|++|||+||..|.+++++.+.++++|++|+|+||+|++..+++|. ++|+||+++++++++++|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccC
Q 011931 164 LKVAAQV 170 (474)
Q Consensus 164 ~~lg~~~ 170 (474)
+.++.++
T Consensus 151 ~~~~~~v 157 (163)
T PF03446_consen 151 EAMGKNV 157 (163)
T ss_dssp HHHEEEE
T ss_pred HHHhCCc
Confidence 9999873
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=252.56 Aligned_cols=250 Identities=19% Similarity=0.193 Sum_probs=203.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+... ..+ +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 58999999999999999999999999999999999987764110 001 25566788888777
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCe-EEecCCCCCccc
Q 011931 73 KPRVIIMLVKAGAP---------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLL-YLGMGVSGGEEG 140 (474)
Q Consensus 73 ~~dvIil~vp~~~~---------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~-~v~~pvsgg~~~ 140 (474)
+|+||+|||++.. +..+++++.+.+++|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 9999999998743 777888899989999999999999999999887655444 443 567788888888
Q ss_pred ccCCC---------ccccCCCHHHHHHHHHHHHHHh-ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVA-AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (474)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~lg-~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l 210 (474)
+..|. .+++|+++++.++++++|+.++ .. ++++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG-------PVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC-------CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 5788999999999999999997 33 5888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcc--hHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 211 ~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~--~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
|++.| +|.+++.+++. .+ +.+.. ..|.|+| ...-+.||+. +....|+++|+++|++
T Consensus 229 a~~~G-iD~~~v~~~~~---~~-----------~~i~~-~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 229 CEALG-IDVYEVIEAAG---TD-----------PRIGF-NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELI 286 (411)
T ss_pred HHHhC-CCHHHHHHHhC---CC-----------CCCCC-CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHH
Confidence 99999 99999998872 22 11111 2355554 4445888876 7889999999999998
Q ss_pred HHH
Q 011931 289 EER 291 (474)
Q Consensus 289 ~~r 291 (474)
+.-
T Consensus 287 ~~~ 289 (411)
T TIGR03026 287 EAA 289 (411)
T ss_pred HHH
Confidence 443
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=224.65 Aligned_cols=206 Identities=16% Similarity=0.121 Sum_probs=166.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh------------hcCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN------------SIQKP 74 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~------------~l~~~ 74 (474)
++||+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 578999999999999999999999999999999999987643211 00 1112222211 01249
Q ss_pred cEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC--------------eEEe
Q 011931 75 RVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL--------------LYLG 131 (474)
Q Consensus 75 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~--------------~~v~ 131 (474)
|+||+|||++ ..+..+++++.+.+++|++||+.||+.|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999997 5788888999999999999999999999999999887776543 3455
Q ss_pred cC--CCCCcccccCCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011931 132 MG--VSGGEEGARHGP-SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (474)
Q Consensus 132 ~p--vsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea 207 (474)
+| +.+|...+..+. ..++|| +++..++++++|+.++.. ++++++.++|+++|+++|.+.+..+++++|+
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEG-------ECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCC-------CeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 555544444444 466788 999999999999999965 3688999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 011931 208 YDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 208 ~~l~~~~G~l~~~~~~~~~ 226 (474)
..+|++.| +|.+++.+.+
T Consensus 230 ~~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 230 SLICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHHhC-CCHHHHHHHh
Confidence 99999999 9999998886
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=218.91 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=163.4
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh------------cCCCCccccCCHHHHHhhc
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK------------EGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~------------~~~~~~~~~~s~~e~~~~l 71 (474)
|...|||||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .+ ++..+ +..+.++.
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t-~~~~~~~~- 76 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFT-SEIEKIKE- 76 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEE-eCHHHHcC-
Confidence 3455799999999999999999887 699999999999999987 3321 00 12333 33445666
Q ss_pred CCCcEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEe--------c
Q 011931 72 QKPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLG--------M 132 (474)
Q Consensus 72 ~~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~v~--------~ 132 (474)
+|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .
T Consensus 77 --advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 77 --CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred --CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 99999999988 3444445788899999999999999999999976544433 3555443 3
Q ss_pred CCCCCcccccCCC--ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 133 GVSGGEEGARHGP--SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (474)
Q Consensus 133 pvsgg~~~a~~G~--~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l 210 (474)
++.+|......+. .++.|++++..+.++++++.+.... .+++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAG------TYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred cCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcC------cEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655444433 5677778888899999999987321 4788999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 011931 211 LKSVGKLTNEELQNVF 226 (474)
Q Consensus 211 ~~~~G~l~~~~~~~~~ 226 (474)
|++.| +|.+++.+++
T Consensus 229 ae~~G-iD~~~v~~a~ 243 (425)
T PRK15182 229 FNRLN-IDTEAVLRAA 243 (425)
T ss_pred HHHhC-cCHHHHHHHh
Confidence 99999 9999998885
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=214.56 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=162.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----------cCCCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----------EGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|||+|||+|.||.++|..|+. ||+|++||+++++++++.+.... ....+++.+.+.++++.. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 589999999999999987774 99999999999999988752100 000023444456777776 999
Q ss_pred EEEecCCC----------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-
Q 011931 77 IIMLVKAG----------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP- 145 (474)
Q Consensus 77 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~- 145 (474)
||+|||++ ..++++++++.. +++|++||+.||++|++++++.+.+.+.++.| +|+.+++|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888877 68999999999999999999998877666544 455555553
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011931 146 --------SLMPGGSFEAYKYIEDILLK--VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 146 --------~i~~gg~~~~~~~v~~ll~~--lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G 215 (474)
.++.|++++..+++.++|.. ++..+ .+++++.++|+++|++.|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNI------PTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57889888888888888854 44332 346899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 011931 216 KLTNEELQNVF 226 (474)
Q Consensus 216 ~l~~~~~~~~~ 226 (474)
+|.+++.+++
T Consensus 223 -iD~~eV~~a~ 232 (388)
T PRK15057 223 -LNTRQIIEGV 232 (388)
T ss_pred -cCHHHHHHHh
Confidence 9999999887
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=215.99 Aligned_cols=269 Identities=14% Similarity=0.064 Sum_probs=193.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C---CCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G---DLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~---~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+|||+|||+|.||.+||.+|+++||+|++|+|++++.+.+....... + ..++..+++++++++. +|+||+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEEE
Confidence 57999999999999999999999999999999999888877542110 0 0013456688887776 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC-Cchh--HHHHHHHHHH---cCCeEEecCCCCCcccccCCC-ccccCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-WYEN--TERREKAMAE---LGLLYLGMGVSGGEEGARHGP-SLMPGGS 152 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--~~~~~~~l~~---~g~~~v~~pvsgg~~~a~~G~-~i~~gg~ 152 (474)
|+|+. ++++++ +.+.++.++|+++++ .+.. .+.+.+.+.+ +++.+++.|......+...+. .++.|++
T Consensus 81 ~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 81 AVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred ECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 99997 566665 445678899999995 4443 5566666655 567677777554433333345 6788999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCce-EEeCC---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCV-TYVSK---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~-~~~g~---------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
++.+++++++|+..+.++...+.-+ .+++. .|.+..+|+.+|.......+.++|+..++++.| ++++++
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~~ 234 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEATF 234 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccch
Confidence 9999999999999887631000000 03443 588999999999999999999999999999999 999999
Q ss_pred HHHHHhhcc-CcchhhhHhhhc--cccccc---ccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 223 QNVFTEWNK-GELLSFLIEITA--DIFGIK---DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 223 ~~~~~~~~~-~~~~s~~~~~~~--~~l~~~---~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
.+++...+- +...|+.++++. ..+..+ +++.+.|.+....+|+. .+.+.+.++++++|++..
T Consensus 235 ~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~ 302 (328)
T PRK14618 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEA 302 (328)
T ss_pred hcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHH
Confidence 887521000 234466666553 133322 22344566666777776 888999999999998733
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=210.09 Aligned_cols=263 Identities=15% Similarity=0.116 Sum_probs=182.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
||||+|||+|.||..+|.+|+++|++|++|||++++++++.+.+.... . .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 579999999999999999999999999999999999888876531100 0 024456677777776 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecC-CCCchhHHHHHHHHHHc-----CCeEEecCCCCCcccccCCC-ccccCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGG-NEWYENTERREKAMAEL-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 152 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~-----g~~~v~~pvsgg~~~a~~G~-~i~~gg~ 152 (474)
|||+. ++++++.++.+.+.++++||+++ +..+...+.+.+.+++. ...++.+|..+.+..+..+. .++.+++
T Consensus 78 ~v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 99984 89999999999888999999998 44444444444444442 34456667654443333334 4566779
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~-----------------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G 215 (474)
.+.++++.++|+..+.++ .+... .|.+..+|+.+|.+.....+.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~~~~-------~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 157 EELAERVQELFHSPYFRV-------YTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred HHHHHHHHHHhCCCCEEE-------EecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999887642 22211 378888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCc----chhhhHhhhc--ccccccccC-----CCcchHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 011931 216 KLTNEELQNVFTEWNKGE----LLSFLIEITA--DIFGIKDDK-----GDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA 284 (474)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~----~~s~~~~~~~--~~l~~~~~~-----~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~ 284 (474)
++++.+.++.. .+. ..|+..+.+. ..+..+..+ ..+ .+....+|++ .+.+.|+++|+|
T Consensus 230 -~d~~~~~~~~~---~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~ 298 (325)
T PRK00094 230 -ANPETFLGLAG---LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVE 298 (325)
T ss_pred -CChhhhhcccH---hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCC
Confidence 99999977642 111 1122221111 111111100 000 1122344444 788999999999
Q ss_pred cccHHHH
Q 011931 285 APTIEER 291 (474)
Q Consensus 285 ~p~~~~r 291 (474)
+|+.+.-
T Consensus 299 ~P~~~~~ 305 (325)
T PRK00094 299 MPITEAV 305 (325)
T ss_pred CCHHHHH
Confidence 9998443
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=203.60 Aligned_cols=116 Identities=15% Similarity=0.286 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHH
Q 011931 314 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 393 (474)
Q Consensus 314 ~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~ 393 (474)
||||||||||||||+||+++|+|++|+...+..+ .++.+|++.|+.| .++||||++++++|++++..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997542211 4677778889988 589999999999999887556789999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011931 394 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 434 (474)
Q Consensus 394 ~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~ 434 (474)
..-+++++ +|++++|+++|+|+|+|++||. ++++++.+|
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R 118 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEER 118 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHH
Confidence 99999999 9999999999999999999996 555555554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=196.05 Aligned_cols=248 Identities=10% Similarity=0.061 Sum_probs=179.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~~~ 69 (474)
+++|+|||+|.||.+||.+|+++|++|++||+++++.+...+.. ...+. .++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999998776543210 00000 02356678888777
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccc
Q 011931 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLM 148 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~ 148 (474)
. +|+|++|+|+..+++..+ ..+.+.. ++++++.+|++ +....++++.+...+..+++.|+.+... . ....+
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~--~-~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYL--I-PVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCccc--C-ceEEE
Confidence 6 999999999876555544 5555544 45555554444 3456677777766677788889875321 1 12335
Q ss_pred cC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 149 PG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 149 ~g---g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
++ ++++.+++++++++.+|.+ ++++++.+.|+ +.|.+ ..++++|++.++++.| +|+++++++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~-------~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~ 218 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQS-------PVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAV 218 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-------EEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 54 7999999999999999977 48999888887 33444 4578899999999998 999999999
Q ss_pred HHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 226 FTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 226 ~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+ ..+.+.+|.+ ..+.... |.++++|....+.++.. +..+.+.+.+.|.|.+.
T Consensus 219 ~---~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~ 270 (308)
T PRK06129 219 I---RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDG 270 (308)
T ss_pred H---HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhH
Confidence 7 4555556554 3343332 44667788888888876 67788888999999884
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=194.31 Aligned_cols=241 Identities=17% Similarity=0.167 Sum_probs=169.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+.|||+|||+|.||++||.+|+++||+|++|||++. .++++++++ +|+||+++|+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~- 58 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK- 58 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-
Confidence 347899999999999999999999999999999852 256677776 99999999995
Q ss_pred hHHHHHHHHHhc-ccCCCEEEecCC-CCchhHHHHHHHHHHcCCeEEecCCC--CCccccc---CC--C-ccccCCCHHH
Q 011931 86 PVDETIKTLSAY-MEKGDCIIDGGN-EWYENTERREKAMAELGLLYLGMGVS--GGEEGAR---HG--P-SLMPGGSFEA 155 (474)
Q Consensus 86 ~v~~vl~~l~~~-l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~~v~~pvs--gg~~~a~---~G--~-~i~~gg~~~~ 155 (474)
.++.+++++.+. +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. .+ . .+++|++.+.
T Consensus 59 ~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~ 135 (308)
T PRK14619 59 GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAA 135 (308)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHH
Confidence 899999888774 778999999987 444444444444432 24456663 4443332 22 3 6788999999
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~-----------------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~ 218 (474)
++.++++|+..+.++ ++.++ .|.+..+|+.+|......+++++|++.++++.| ++
T Consensus 136 ~~~v~~ll~~~~~~~-------~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~ 207 (308)
T PRK14619 136 AETVQQIFSSERFRV-------YTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQ 207 (308)
T ss_pred HHHHHHHhCCCcEEE-------EecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 999999999988653 43333 234455568999999999999999999999999 99
Q ss_pred HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHH------HHhhhcCCCccHH----HHHHHHHHcCCCcccH
Q 011931 219 NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVD------KVLDKTGMKGTGK----WTVQQAADLSVAAPTI 288 (474)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~------~i~~~~~~k~tg~----~~~~~a~~~gv~~p~~ 288 (474)
++.+.++ .+.+++++.. ..+..+ +|..+|.+. .+.+.+.+..+|. .+.+.+++.|+++|++
T Consensus 208 ~~t~~~~-----~g~gd~~~t~---~~~~~r-n~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~ 278 (308)
T PRK14619 208 TETFYGL-----SGLGDLLATC---TSPLSR-NYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPIT 278 (308)
T ss_pred ccccccc-----cchhhhheee---cCCCCc-cHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHH
Confidence 9888764 2444444421 111111 133333333 3333333322222 5678899999999998
Q ss_pred HH
Q 011931 289 EE 290 (474)
Q Consensus 289 ~~ 290 (474)
..
T Consensus 279 ~~ 280 (308)
T PRK14619 279 EQ 280 (308)
T ss_pred HH
Confidence 43
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-22 Score=194.56 Aligned_cols=121 Identities=13% Similarity=0.228 Sum_probs=104.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCC-CCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADL-ANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l-~~ll~ 388 (474)
+.++|||||||||||||+.||.++|.|++||..-...+ .++.+||.-||+| .+.|||++++.++|++++.. .+.|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 67999999999999999999999999999997433222 3455566669999 89999999999999986543 45899
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 435 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~ 435 (474)
|.+.+.+-||+++ ||+++.|+++|+|+|.|++|+. |+++++.+|.
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~ 298 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERV 298 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999 9999999999999999999996 7777776663
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=177.94 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=166.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
++|||||||.+|.++|..++++|++|+++|.++.+++.+.... ...| +++.+++++++..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~--- 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE--- 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc---
Confidence 7999999999999999999999999999999999988765311 0111 4666777776653
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeE-EecCCCCCccc
Q 011931 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLY-LGMGVSGGEEG 140 (474)
Q Consensus 73 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~-v~~pvsgg~~~ 140 (474)
||++|+|||++- .+++..+.+.+.|++|++||--||++|++|+++...+.+. |..| .|..+.-.|+.
T Consensus 85 -~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 -CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred -CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999872 4666778899999999999999999999999999877653 4444 24344444555
Q ss_pred ccCCC---------ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (474)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~ 211 (474)
...|. .++.|-+++..+.+..+++.+-.. ++.+.+.-.++++|+..|.++..++++++|...+|
T Consensus 164 v~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~-------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG-------VIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred cCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE-------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 55553 244445888899999999998865 46778889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011931 212 KSVGKLTNEELQNVF 226 (474)
Q Consensus 212 ~~~G~l~~~~~~~~~ 226 (474)
++.| ++.-++.++.
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9998888876
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=180.46 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=156.9
Q ss_pred CcEEEEcccHh--------------------HHHHHHHHHHCCCcEEEEeCChHHH-----HHHHHhhhhcCCCCccccC
Q 011931 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKV-----DETVERAKKEGDLPLFGFR 62 (474)
Q Consensus 8 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~~~~~~~~~~~~~~ 62 (474)
|||.|.|+|+- |.+||.+|+++||+|++|||++++. +.+.+. ++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 68889998864 7889999999999999999998743 333322 356677
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhH-HHHHHHHH----HcCCeEE-ecCCCC
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMA----ELGLLYL-GMGVSG 136 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~----~~g~~~v-~~pvsg 136 (474)
++.++++. +|+||+|+|++..+++++.++.+.+.++.+|||+||+.+... +.+.+.+. ..|+++. ++++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888877 999999999986589999999999999999999999988776 45555553 3355554 345555
Q ss_pred CcccccCCCcccc--------CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGPSLMP--------GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (474)
Q Consensus 137 g~~~a~~G~~i~~--------gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~ 208 (474)
++.+. ..++. +++++.+++++++|+.+|.+ +++++ .|.+..+|+++|.+.+..++.++|++
T Consensus 151 ae~g~---l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-------v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~ 219 (342)
T PRK12557 151 TPQHG---HYVIAGKTTNGTELATEEQIEKCVELAESIGKE-------PYVVP-ADVVSAVADMGSLVTAVALSGVLDYY 219 (342)
T ss_pred cccch---heEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-------EEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 14444 44899999999999999976 46666 59999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 011931 209 DVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 209 ~l~~~~G~l~~~~~~~~~ 226 (474)
.++++.| .++.++.+-+
T Consensus 220 ~l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 220 SVGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHHhC-CCHHHHHHHH
Confidence 9999999 8888776543
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=168.98 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=185.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|||+|||+|.+|...+..|++.||+|+++|.+++|++.+.+... ..+ ++..+++.+++++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 79999999999999999999999999999999999987764211 111 47888999999888
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccC
Q 011931 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 73 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~ 143 (474)
+|++|+|||++. .++++++.+.+.+...++||.-||+++++++++.+.+.+....= +-.|...|+..++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999999874 47788899999998889999999999999999888775542110 3344555677777
Q ss_pred CC---------ccccCCCH-HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 144 GP---------SLMPGGSF-EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (474)
Q Consensus 144 G~---------~i~~gg~~-~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~ 213 (474)
|. .+++|... .+.+.++++++.+..+ .+.+.......++++|+..|++.+.-+..++|.-.+|++
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~-----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ-----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc-----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 46778744 4678888888776432 223444556899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 214 ~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.| +|..++.+.+. .... .++ .-+...-.|++... -||.. -.+..|.++|.+.+++
T Consensus 230 ~g-~D~~~V~~gIG-lD~R-IG~-------~fl~aG~GyGGsCf----PKD~~------AL~~~a~~~~~~~~ll 284 (414)
T COG1004 230 VG-ADVKQVAEGIG-LDPR-IGN-------HFLNAGFGYGGSCF----PKDTK------ALIANAEELGYDPNLL 284 (414)
T ss_pred hC-CCHHHHHHHcC-CCch-hhH-------hhCCCCCCCCCcCC----cHhHH------HHHHHHHhcCCchHHH
Confidence 99 99999988762 1111 111 11222112333222 23332 3567899999998888
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-21 Score=182.35 Aligned_cols=121 Identities=11% Similarity=0.171 Sum_probs=107.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++|||||||||||||+.||.++|.|++|+.+-+..+ .++++++..||.| .+.|+|+++++++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 67999999999999999999999999999998665444 6788888889999 89999999999999877655668999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 435 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~ 435 (474)
.+.+.+-+|+++ +|+|+.|+++|+|+|+|.+|+. ++++.+.+|.
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~ 301 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERV 301 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999996 6666666653
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-18 Score=178.49 Aligned_cols=210 Identities=15% Similarity=0.160 Sum_probs=162.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---C---------CCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---G---------DLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---~---------~~~~~~~~s~~e~~~~l~ 72 (474)
||||+|||+|.+|..+|..|+++| ++|++||+++++++.+.+..... + +.+++.+++..+.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 579999999999999999999884 78999999999999876432100 0 0025566677777776
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--C--CeEEecCC
Q 011931 73 KPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--G--LLYLGMGV 134 (474)
Q Consensus 73 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g--~~~v~~pv 134 (474)
+|++|+|||++. .++++++.+.+.++++++||..||.+|++++++...+.+. | +++..+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999998654 4677888999999999999999999999999998877653 3 34445563
Q ss_pred CCCcccccC---CC-ccccCCC-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 135 SGGEEGARH---GP-SLMPGGS-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 135 sgg~~~a~~---G~-~i~~gg~-----~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
.-.+-.+.+ -+ .+++||. +++.++++.+++.+.... .+.+.+.-+++++|++.|++.+..+++++
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~------~i~~~s~~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEE------RIITTNLWSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCC------CEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222221 12 4667873 335788888998886321 35667789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011931 206 EAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 206 Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
|...+|++.| +|..++.+.+
T Consensus 232 Ela~lce~~g-iD~~eV~~~~ 251 (473)
T PLN02353 232 AMSALCEATG-ADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHhC-CCHHHHHHHh
Confidence 9999999999 9999988876
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=166.72 Aligned_cols=186 Identities=17% Similarity=0.198 Sum_probs=141.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC----cEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||||||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.+ +..+.+..++++. +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLG-------VKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcC-------CEEeCChHHHHhc---CCEEEEEEC
Confidence 689999999999999999999998 89999 99999887776533 5567788888877 999999997
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
+ +.+++++.++.+.+.++++||+..++.+.. .+.+.+.. . +++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 589999999988888899998876654332 33333221 1 5664 77665544332222 223445889999999
Q ss_pred HHHHHHhccCCCCCCceEEe---------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 161 DILLKVAAQVPDSGPCVTYV---------SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~---------g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
++|+.+|. + +++ +..|+|.. +.+.+++.+.|+ +.+.| +++++..+++.
T Consensus 146 ~l~~~~G~-~-------~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~ 202 (266)
T PLN02688 146 TLFGAVGK-I-------WVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAA 202 (266)
T ss_pred HHHHhCCC-E-------EEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999996 3 555 44677775 467788888998 78888 99999999874
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=183.61 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=146.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l 71 (474)
.+||||||+|.||.+||.+|+++|++|++||+++++.+.+.+... ..+ ++..++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 468999999999999999999999999999999998776532100 000 25677888888887
Q ss_pred CCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-cccc
Q 011931 72 QKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMP 149 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~ 149 (474)
||+||+|+|+..+++.. +.++.+.++++. ||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 99999999998777765 466777666665 556666655433 566666667778888886522 2345 5667
Q ss_pred CCC---HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 011931 150 GGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQL-IAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 150 gg~---~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~-i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
+|+ ++.+++++++|+.+|.+ .++++. .+.|.+...++.. ++|++.|+++.| ++++++.++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~-------~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMK-------PVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-------EEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 764 89999999999999976 477763 4445555555566 599999999998 999999999
Q ss_pred HH
Q 011931 226 FT 227 (474)
Q Consensus 226 ~~ 227 (474)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=169.26 Aligned_cols=194 Identities=13% Similarity=0.204 Sum_probs=137.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+.|||+|||+|.||.+|+.+|+++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+|
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVila 72 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLA 72 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEE
Confidence 3469999999999999999999998 78999999864 566665532 24566788888877 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEec-CCCCchhHHHHHHHHHHcCCeEEe-cCCCCCccccc-CCCccccCCC---HH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDG-GNEWYENTERREKAMAELGLLYLG-MGVSGGEEGAR-HGPSLMPGGS---FE 154 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~-~G~~i~~gg~---~~ 154 (474)
||+. .+.+++.++.+.+.++++||++ ++..+...++ .+ ..+..++. +|. ...+. .|.+++++++ ++
T Consensus 73 v~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~~~v~r~mPn---~~~~~~~~~t~~~~~~~~~~~ 144 (279)
T PRK07679 73 MKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKDVPIIRAMPN---TSAAILKSATAISPSKHATAE 144 (279)
T ss_pred eCHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCCCeEEEECCC---HHHHHhcccEEEeeCCCCCHH
Confidence 9985 7888889998888889999997 5554433333 22 22333333 232 22333 3446666664 67
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEE--eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTY--VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~--~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
.++.++++|+.+|......|.. ++ ++..|+|.. +.+.++..+.|+ +.+.| +++++..+++..
T Consensus 145 ~~~~v~~l~~~~G~~~~v~e~~-~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~~ 208 (279)
T PRK07679 145 HIQTAKALFETIGLVSVVEEED-MHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHHHhCCcEEEeCHHH-hhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 8899999999999753222221 14 566788775 355555566665 78888 999999999854
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=167.25 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=142.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCC----------CCccccCCHHHHHhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGD----------LPLFGFRDPESFVNS 70 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~~~----------~~~~~~~s~~e~~~~ 70 (474)
.+|+|||+|.||.+||.+|+++|++|++||+++++++++.+. +...+. .+++.+++++++++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 579999999999999999999999999999999988876532 110000 023456778777777
Q ss_pred cCCCcEEEEecCCChhHHH-HHHHHHhcccCCCEE-EecCCCCchhHHHHHHHHH-HcCCeEEecCCCCCcccccCCC-c
Q 011931 71 IQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCI-IDGGNEWYENTERREKAMA-ELGLLYLGMGVSGGEEGARHGP-S 146 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~-~~g~~~v~~pvsgg~~~a~~G~-~ 146 (474)
||+||+|+|++.+++. ++.++.+.++++.+| +++||..+....+..+... ..|+||+ +|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 9999999999877664 457788888888876 6788877654333222111 1377888 787664 4 5
Q ss_pred cccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 147 LMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 147 i~~gg---~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
.+++| +++++++++++++.++.. ++++++ ..|. +.|.+.+ .+++|++.+.++.. .+++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~-------~v~v~d-~~Gf----~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD 214 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKE-------TVVVNE-FPGF----VTSRISA---LVGNEAFYMLQEGV-ATAEDID 214 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCe-------EEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 67776 899999999999999987 477875 3444 3455543 56699999998865 7899998
Q ss_pred HHH
Q 011931 224 NVF 226 (474)
Q Consensus 224 ~~~ 226 (474)
.++
T Consensus 215 ~~~ 217 (288)
T PRK09260 215 KAI 217 (288)
T ss_pred HHH
Confidence 886
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=168.50 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=137.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---CC-------CccccCCHHHHHhhcCCCc
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---DL-------PLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~~-------~~~~~~s~~e~~~~l~~~d 75 (474)
+||||+|||+|.||+.+|..|+++||+|++|||++. .+.+.+.+.... +. ++..+++. +.+.. +|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALAT---AD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccC---CC
Confidence 467999999999999999999999999999999753 355544331100 00 01123344 33444 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec--C---CCCCccccc---CCCcc
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM--G---VSGGEEGAR---HGPSL 147 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~--p---vsgg~~~a~---~G~~i 147 (474)
+||+|||+. ++.++++.+.+.+.++++|++++++. ...+.+.+.+.. .+++.+ + +++++..+. .|. +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999986 67888999999998999999998865 334455555432 233332 2 333333222 333 2
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH--------------------HHHHHHH
Q 011931 148 MPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD--------------------MQLIAEA 207 (474)
Q Consensus 148 ~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~--------------------~~~i~Ea 207 (474)
..+ +.+.++++.++|+..+.+ +.+.++.+.+.+.|++.|.+.... ..++.|+
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~ 222 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAGLP-------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREA 222 (341)
T ss_pred Eec-CCchHHHHHHHHHhcCCC-------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHH
Confidence 223 235568899999988866 478899999999999999643333 3789999
Q ss_pred HHHHHHhCCCCHHHH
Q 011931 208 YDVLKSVGKLTNEEL 222 (474)
Q Consensus 208 ~~l~~~~G~l~~~~~ 222 (474)
+.++++.| ++++.+
T Consensus 223 ~~va~a~G-i~~~~~ 236 (341)
T PRK08229 223 LRVLKAAG-IRPARL 236 (341)
T ss_pred HHHHHHcC-CCcccc
Confidence 99999999 987654
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=174.08 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=145.9
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH-----------HHhhhhcC------CCCccccCC
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET-----------VERAKKEG------DLPLFGFRD 63 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~~------~~~~~~~~s 63 (474)
|+.-....+|||||+|.||..||.+|+.+||+|++||++++++++. .+.+.... -.+++.+++
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 80 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEA 80 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 3333345689999999999999999999999999999999988774 22221000 003567778
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEE-ecCCCCchhHHHHHHHHH--H--cCCeEEe-cCCCC
Q 011931 64 PESFVNSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCII-DGGNEWYENTERREKAMA--E--LGLLYLG-MGVSG 136 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~--~--~g~~~v~-~pvsg 136 (474)
++++. . ||+||.|||++.+++..+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 81 ~~~~~-~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~ 153 (507)
T PRK08268 81 LADLA-D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK 153 (507)
T ss_pred HHHhC-C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe
Confidence 87654 4 999999999999988876 56666677888884 77777654 3444433 2 3889998 77763
Q ss_pred CcccccCCCccccC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGPSLMPG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLK 212 (474)
Q Consensus 137 g~~~a~~G~~i~~g---g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~ 212 (474)
- ..+++ +++++++++.++++.+++. ++++++ .| .+.|.+.. ..++|++.+++
T Consensus 154 L--------vEvv~g~~Ts~~~~~~~~~l~~~lgk~-------pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~ 209 (507)
T PRK08268 154 L--------VEVVSGLATDPAVADALYALARAWGKT-------PVRAKDTPG------FIVNRAAR---PYYTEALRVLE 209 (507)
T ss_pred e--------EEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCCCC------hHHHHHHH---HHHHHHHHHHH
Confidence 2 34444 5899999999999999976 477875 45 36676654 47899999999
Q ss_pred HhCCCCHHHHHHHHH
Q 011931 213 SVGKLTNEELQNVFT 227 (474)
Q Consensus 213 ~~G~l~~~~~~~~~~ 227 (474)
+.+ ++++++.+++.
T Consensus 210 ~g~-~~~~~iD~al~ 223 (507)
T PRK08268 210 EGV-ADPATIDAILR 223 (507)
T ss_pred cCC-CCHHHHHHHHH
Confidence 988 99999999974
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=166.09 Aligned_cols=275 Identities=18% Similarity=0.187 Sum_probs=190.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+++|+|||.|.+|++||..|+++||+|.+|.|+++..+++.+...+.. + .++..+++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 478999999999999999999999999999999999998876532210 0 046678899999988 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHH-HHHHH-cC---CeEEecCCCCCcccccCCC-ccc-cCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE-KAMAE-LG---LLYLGMGVSGGEEGARHGP-SLM-PGGS 152 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~-~g---~~~v~~pvsgg~~~a~~G~-~i~-~gg~ 152 (474)
+||.. .+++++.++.+.+.++.+++.++.+....+.++. +.+++ .+ +.++..|- ...+-++.-| .+. .+-|
T Consensus 78 avPs~-~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs-~A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPSQ-ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPS-FAKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECChH-HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECcc-HHHHHhcCCCcEEEEecCC
Confidence 99984 8999999998899999999999988766544433 33322 13 33444442 2233344444 444 4558
Q ss_pred HHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 153 FEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
++..++++.+|..=..++ ...-|+|+-++. |....+.+-.|+-.+.+...++|+..++...| -.+++
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 888888999886522221 011134443332 55666778889999999999999999999999 77776
Q ss_pred HHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHH----HHHHHcCCCcccHHHH
Q 011931 222 LQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIEER 291 (474)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~----~~a~~~gv~~p~~~~r 291 (474)
+..+- .-|.+--.+.+.+++..+...-...+..++..+...+|.-+|..++ +.|+++++++|++++=
T Consensus 234 ~~gLs---GlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~V 304 (329)
T COG0240 234 FMGLS---GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAV 304 (329)
T ss_pred hcccc---cccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 65441 1133333333333333222222233456677777778888888777 4589999999998654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=163.69 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=134.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|+|||+|.||.++|..|.++|++|++||++++..+++.+.+. +....+..+.+.. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 58999999999999999999999999999999998888766542 2223233345555 99999999986 67
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCc-ccccCCC-ccc--------c--CCCHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGE-EGARHGP-SLM--------P--GGSFE 154 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~-~~a~~G~-~i~--------~--gg~~~ 154 (474)
..+++++.+.+.++.+|+|++++.+....... .....|++ .|+.|++ .+...+. .++ + +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 77889999989899999999998754433332 23345887 6998876 3443332 222 2 35788
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
.++.++++++.+|.+ ++++++.+....++++.|...+....+++
T Consensus 147 ~~~~v~~l~~~lG~~-------~v~~~~~~hD~~~a~~shlp~~~a~~l~~ 190 (279)
T PRK07417 147 ALAIVEELAVSLGSK-------IYTADPEEHDRAVALISHLPVMVSAALIQ 190 (279)
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHcchHHHHHHHHHH
Confidence 999999999999986 47899999999999998887665544433
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=156.59 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=140.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|||+|||+|.||.+||..|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|||+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 489999999999999999999996 78999999998887765432 12344666654 3 99999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCC----ccccc----CCC-ccccC---CC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 152 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg----~~~a~----~G~-~i~~g---g~ 152 (474)
.+.+++.++.+ +.++++|+|++++.....+.+.+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788889988 889999999988764443333222 23568886 99875 44333 455 44543 46
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
++.++.++++|+.+|.+ ++++++.+....++++++.-. ....+++++. . .+ .+.+.+.++
T Consensus 146 ~~~~~~v~~l~~~~G~~-------~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLGMR-------IVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhCCE-------EEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hc-CChHHHHhh
Confidence 78899999999999987 589999999999999988854 4555555554 1 24 565555444
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=171.21 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=139.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~~ 68 (474)
+..+|||||+|.||..||.+|+.+||+|++||++++++++..+.. ...|. .+++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 456899999999999999999999999999999999887542210 00000 0355677887653
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEe-cCCCCchhHHHHHHHHH----HcCCeEEe-cCCCCCcccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIID-GGNEWYENTERREKAMA----ELGLLYLG-MGVSGGEEGA 141 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~----~~g~~~v~-~pvsgg~~~a 141 (474)
. ||+||.|||++.+++..+ .++...++++.+|.. +|+..+ + ++++.+. ..|+||++ +|++.
T Consensus 84 -~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i--~-~iA~~~~~p~r~~G~HFf~Papv~~----- 151 (503)
T TIGR02279 84 -D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI--T-AIAAGLARPERVAGLHFFNPAPVMA----- 151 (503)
T ss_pred -C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH--H-HHHHhcCcccceEEEeccCccccCc-----
Confidence 4 999999999998888776 556666666666553 333332 2 3444442 34889998 67763
Q ss_pred cCCCccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011931 142 RHGPSLMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (474)
Q Consensus 142 ~~G~~i~~gg---~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l 217 (474)
-..+++| ++++++.+.++++.+|+.+ +++++ .| . +.|.+. ..+++|++.++++.+ +
T Consensus 152 ---LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p-------v~v~d~pG--f----i~Nrl~---~~~~~EA~~l~e~g~-a 211 (503)
T TIGR02279 152 ---LVEVVSGLATAAEVAEQLYETALAWGKQP-------VHCHSTPG--F----IVNRVA---RPYYAEALRALEEQV-A 211 (503)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCee-------eEeCCCCC--c----HHHHHH---HHHHHHHHHHHHcCC-C
Confidence 2456677 8999999999999999874 77775 44 2 556665 368899999999988 9
Q ss_pred CHHHHHHHHH
Q 011931 218 TNEELQNVFT 227 (474)
Q Consensus 218 ~~~~~~~~~~ 227 (474)
+++++.++++
T Consensus 212 ~~~~ID~al~ 221 (503)
T TIGR02279 212 APAVLDAALR 221 (503)
T ss_pred CHHHHHHHHH
Confidence 9999999985
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=156.82 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=141.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH-----------HhhhhcC------CCCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-----------ERAKKEG------DLPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~~------~~~~~~~~s~~e~~~ 69 (474)
+.+|||||+|.||..||..|+.+|++|++||++++.+++.. +.+.... -.+++.++++++ ++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 45899999999999999999999999999999999877632 2211000 003446777744 45
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHHhcc-cCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEe-cCCCCCcccccCC
Q 011931 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAEL--GLLYLG-MGVSGGEEGARHG 144 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~v~-~pvsgg~~~a~~G 144 (474)
. ||+||.|+|++.+++..+ ..+...+ +++.++++.|++.|.+........+++ |+||++ +|+++..+-
T Consensus 84 ~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl---- 156 (286)
T PRK07819 84 D---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL---- 156 (286)
T ss_pred C---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE----
Confidence 5 999999999999888777 4455555 789999999998876655544333444 778887 566655430
Q ss_pred CccccCCCHHHHHHHHHHHH-HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 145 PSLMPGGSFEAYKYIEDILL-KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 145 ~~i~~gg~~~~~~~v~~ll~-~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
....++++++++++.+++. .++..+ +.+++ ..|.. .|.+ ....++|++.+.++.. .+++++.
T Consensus 157 -v~~~~T~~~~~~~~~~~~~~~lgk~p-------v~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 -VPTLVTSEATVARAEEFASDVLGKQV-------VRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred -eCCCCCCHHHHHHHHHHHHHhCCCCc-------eEecC-CCChH----HHHH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 2334579999999999988 588763 56654 44543 3444 4556699999998866 7899999
Q ss_pred HHH
Q 011931 224 NVF 226 (474)
Q Consensus 224 ~~~ 226 (474)
.++
T Consensus 220 ~~~ 222 (286)
T PRK07819 220 KAM 222 (286)
T ss_pred HHH
Confidence 886
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=153.00 Aligned_cols=197 Identities=13% Similarity=0.052 Sum_probs=138.8
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC------CCCccccCCHHHHHhh
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG------DLPLFGFRDPESFVNS 70 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~------~~~~~~~~s~~e~~~~ 70 (474)
.....+|||||+|.||.+||.+|+.+|++|++||++++..+++.+... ..+ ..++..+++++++++.
T Consensus 4 ~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 4 ITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 344568999999999999999999999999999999987665433110 000 0035667788888877
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCC-CCCcccccCC
Q 011931 71 IQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGV-SGGEEGARHG 144 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pv-sgg~~~a~~G 144 (474)
||+|+.|+|...+++..+ .++.+.++++. ||.+||+. ....++++.+... +.||+..|- ..-.
T Consensus 84 ---aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~~pLV------ 152 (321)
T PRK07066 84 ---ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVVGHPFNPVYLLPLV------ 152 (321)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEEEecCCccccCceE------
Confidence 999999999998888665 77878787776 55555553 3444555555322 445554331 1111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 145 PSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 145 ~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
-++.| .+++.++.+..+++.+|.++ +.+...-.|+ +.|.+. ..+++|++.+.++.. .+++++
T Consensus 153 -EVv~g~~T~~e~~~~~~~f~~~lGk~p-------V~v~kd~pGF----i~NRl~---~a~~~EA~~lv~eGv-as~edI 216 (321)
T PRK07066 153 -EVLGGERTAPEAVDAAMGIYRALGMRP-------LHVRKEVPGF----IADRLL---EALWREALHLVNEGV-ATTGEI 216 (321)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCEe-------EecCCCCccH----HHHHHH---HHHHHHHHHHHHhCC-CCHHHH
Confidence 24554 37999999999999999763 5564445555 446665 445699999999977 899999
Q ss_pred HHHHH
Q 011931 223 QNVFT 227 (474)
Q Consensus 223 ~~~~~ 227 (474)
+.++.
T Consensus 217 D~a~~ 221 (321)
T PRK07066 217 DDAIR 221 (321)
T ss_pred HHHHH
Confidence 99873
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=151.27 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=136.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C-----C------CCccccCCHHHHHhhcCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G-----D------LPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-~-----~------~~~~~~~s~~e~~~~l~~~ 74 (474)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+..... + . .++..+++++++++. +
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG---A 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---C
Confidence 46899999999999999999999999999999999887766521000 0 0 013455677777776 9
Q ss_pred cEEEEecCCChh-HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCC--
Q 011931 75 RVIIMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGG-- 151 (474)
Q Consensus 75 dvIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg-- 151 (474)
|+||+|||+..+ ...++.++.+.++++.+|+..+++.+ ..++++.+.. ..+++.+.....+. ......+++|.
T Consensus 81 DlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~-~~~l~~i~~g~~t 156 (311)
T PRK06130 81 DLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPAD-VIPLVEVVRGDKT 156 (311)
T ss_pred CEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCc-cCceEEEeCCCCC
Confidence 999999998754 45677778777766666655544433 3355555432 22334332221111 11111344443
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+++.++.++++|+.+|.. ++++++...|. +++|. ...+++|++.++++.| ++++++.+++.
T Consensus 157 ~~~~~~~v~~l~~~~G~~-------~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 157 SPQTVATTMALLRSIGKR-------PVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CHHHHHHHHHHHHHcCCE-------EEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 789999999999999976 47787655555 55555 3467899999999988 99999999873
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=151.02 Aligned_cols=191 Identities=14% Similarity=0.204 Sum_probs=133.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~~~ 69 (474)
.++|+|||+|.||.+||.+|+++|++|++||+++++++.+.+... ..+. .+++.++++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 357999999999999999999999999999999998776543210 0000 02445566654 44
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~-~pvsgg~~~a~~ 143 (474)
. +|+||+|+|+..+++ .++.++.+.++++.+|+..+++.+.. .+++.+.. .|+||++ +|++++.+
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s--~la~~~~~~~r~~g~h~~~p~~~~~~ve---- 153 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT--RLASATDRPERFIGIHFMNPVPVMKLVE---- 153 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCcccEEEeeccCCcccCceEE----
Confidence 5 999999999876655 55678888898999888433333222 45554421 2677877 45544332
Q ss_pred CCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~--~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
++ .+++++.++.+.++|+.+|..+ +++++.+ | +++++. ...+++|++.+..+.- .++++
T Consensus 154 ---i~~g~~t~~~~~~~~~~~~~~~gk~~-------v~~~d~p-g---~i~nRl----~~~~~~ea~~~~~~g~-~~~~~ 214 (292)
T PRK07530 154 ---LIRGIATDEATFEAAKEFVTKLGKTI-------TVAEDFP-A---FIVNRI----LLPMINEAIYTLYEGV-GSVEA 214 (292)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCcC-C---hHHHHH----HHHHHHHHHHHHHhCC-CCHHH
Confidence 33 4579999999999999999763 6776533 3 333333 3456799999998854 58999
Q ss_pred HHHHH
Q 011931 222 LQNVF 226 (474)
Q Consensus 222 ~~~~~ 226 (474)
+..++
T Consensus 215 iD~~~ 219 (292)
T PRK07530 215 IDTAM 219 (292)
T ss_pred HHHHH
Confidence 98886
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=149.14 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=141.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+||||||+|+||.+|+.+|.++|+ +|++|||++++++.+.+.. ++..+.+..++++. ||+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4589999999999999999999885 6999999999988876532 24556788888877 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccCC--CHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~gg--~~~~~~~ 158 (474)
+ +.++++++++.+.++++.+||+.-.+.+ ...+.+.+.. ..+++. +|... .....|. .+..+. +++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~-~~~vvR~MPN~~--~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDR-KLKVIRVMPNTP--VLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCC-CCcEEEECCChH--HHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888899999988863 4455555532 223333 55432 2334566 344433 5677789
Q ss_pred HHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++.+|+.+|.....+|..+-.+.. .|+|. ++.+.++..+.++ +.+.| ++.++..++...
T Consensus 147 v~~lf~~~G~~~~~~E~~~d~~talsgsgP-------Af~~~~~eal~~a---~v~~G-l~~~~A~~l~~~ 206 (272)
T PRK12491 147 VLNIFNIFGQTEVVNEKLMDVVTSISGSSP-------AYVYMFIEAMADA---AVLGG-MPRKQAYKFAAQ 206 (272)
T ss_pred HHHHHHcCCCEEEEcHHHhhhHHHhccCcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999754333333322222 46665 4667777777777 67778 999999888743
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=156.02 Aligned_cols=194 Identities=19% Similarity=0.212 Sum_probs=142.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+|+||| +|.||.++|..|.++|++|++|||++++..++.... ++..+.+..+.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988766555432 24456677777776 99999999985 7
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccccCCC-ccccC---CCHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYKYIED 161 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a~~G~-~i~~g---g~~~~~~~v~~ 161 (474)
+.+++.++.+.++++++|+|++++.......+.+.+ ..+..|+++ |+.|.......|. .++.. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 788999999999999999999998866666665554 347889987 8887554555676 44443 36788899999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~ 224 (474)
+|+.+|.+ ++++++... -+++.+.....++..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G~~-------v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEGAR-------VIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcCCE-------EEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 99999986 466766533 2333333333334444444443 5567 88776544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=150.32 Aligned_cols=191 Identities=14% Similarity=0.201 Sum_probs=132.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCCC----------CccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGDL----------PLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~~~~----------~~~~~~s~~e~~~ 69 (474)
+.+|||||+|.||.+||.+|+.+|++|++||+++++++...+. ....+.. ++...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 3579999999999999999999999999999999887642211 0000000 12333444 4556
Q ss_pred hcCCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEE-ecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCII-DGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~~~a~~ 143 (474)
. ||+||+|||++.+++.. +.++.+.++++.+|+ ++|+..+.. +++.+.. .|+||+++|..+.-
T Consensus 83 ~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~h~~~pp~~~~l----- 151 (295)
T PLN02545 83 D---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGMHFMNPPPIMKL----- 151 (295)
T ss_pred C---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEEeccCCcccCce-----
Confidence 5 99999999988777765 477888888888887 566654333 3333321 36778877765321
Q ss_pred CCcccc--CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLMP--GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~~--gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
..++. +++++.++.++++|+.+|.. ++++++ ..|. +.|.+. ..+++|++.+.++.. .++++
T Consensus 152 -veiv~g~~t~~e~~~~~~~ll~~lG~~-------~~~~~d-~~g~----i~nri~---~~~~~ea~~~~~~gv-~~~~~ 214 (295)
T PLN02545 152 -VEIIRGADTSDEVFDATKALAERFGKT-------VVCSQD-YPGF----IVNRIL---MPMINEAFYALYTGV-ASKED 214 (295)
T ss_pred -EEEeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-cccH----HHHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 12333 35899999999999999976 366665 2232 455554 445799999999876 88999
Q ss_pred HHHHH
Q 011931 222 LQNVF 226 (474)
Q Consensus 222 ~~~~~ 226 (474)
+..++
T Consensus 215 iD~~~ 219 (295)
T PLN02545 215 IDTGM 219 (295)
T ss_pred HHHHH
Confidence 98875
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=154.55 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=141.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.+++|+||| +|.||.++|..|.++||+|++||+++. .++++++.+ ||+||+|+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH
Confidence 457899998 999999999999999999999998631 134556666 99999999997
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcccccCCC-ccccCC-CHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYKYIED 161 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ 161 (474)
....++.++.+ +++|.+|+|+|++++.....+.+.+ ...|+ ..|+.|.+.....|. .++.++ ++++++.+.+
T Consensus 154 -~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~---~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 -LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH---SGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred -HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC---CCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 57778888888 8999999999998866655555432 22588 569999876666666 555555 6788999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~ 224 (474)
+++.+|++ ++++++.+....+++++ .+ .++..++++..+++ .+ .+.+.+.+
T Consensus 229 l~~~lG~~-------v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 229 QIQVWGAR-------LHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHHCCCE-------EEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999987 58999999999999997 33 56667777877766 56 77666543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=153.19 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=174.7
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC----CC----CccccCCHHHHHhhcC
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG----DL----PLFGFRDPESFVNSIQ 72 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~----~~----~~~~~~s~~e~~~~l~ 72 (474)
|...+.+|||+|||+|.||+.+|..|+++| +|.+|.|+++..+.+.+.+.... +. ++..+++++++++.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~-- 77 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC-- 77 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--
Confidence 455566789999999999999999999999 78999999999888876432100 00 23456677777766
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHH-HHHHHH----cCCeEEecCCCCCcccccCCC--
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMAE----LGLLYLGMGVSGGEEGARHGP-- 145 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~~----~g~~~v~~pvsgg~~~a~~G~-- 145 (474)
+|+||++||+. .++++++++.+.+.++.++|.++++....+..+ .+.+++ ..+..+..|-.- .....|.
T Consensus 78 -aDlVilavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a--~ev~~g~~t 153 (341)
T PRK12439 78 -ADVVVMGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA--REVAEGYAA 153 (341)
T ss_pred -CCEEEEEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH--HHHHcCCCe
Confidence 99999999975 899999999999988888999988876432222 222222 112233333111 1111244
Q ss_pred cccc-CCCHHHHHHHHHHHHHHhccCCC-----------CCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 146 SLMP-GGSFEAYKYIEDILLKVAAQVPD-----------SGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (474)
Q Consensus 146 ~i~~-gg~~~~~~~v~~ll~~lg~~~~~-----------~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~ 213 (474)
.+.+ +.+++..+.++++|+.-+.++.. .-++++.++ .|...-+.+..|.-...+...+.|+..++++
T Consensus 154 ~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a 232 (341)
T PRK12439 154 AAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVA 232 (341)
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 2333 34677778888888765544200 001112221 1222233444556556778899999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHH----HHHHHcCCCcccHH
Q 011931 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIE 289 (474)
Q Consensus 214 ~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~----~~a~~~gv~~p~~~ 289 (474)
.| .+++.+..+. --|.+--.+++..++..+....+..+..++.+.+.+++.-+|..++ +.++++++.+|++.
T Consensus 233 ~G-~~~~t~~gl~---G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~ 308 (341)
T PRK12439 233 MG-GNPETFAGLA---GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAR 308 (341)
T ss_pred hC-CCcccccccc---hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHH
Confidence 99 8888776542 0122222222221222111112334456777777778888887776 45889999999984
Q ss_pred HH
Q 011931 290 ER 291 (474)
Q Consensus 290 ~r 291 (474)
.=
T Consensus 309 ~~ 310 (341)
T PRK12439 309 EV 310 (341)
T ss_pred HH
Confidence 43
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=148.77 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=136.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh----------hcCCC----------CccccCCHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------KEGDL----------PLFGFRDPES 66 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----------~~~~~----------~~~~~~s~~e 66 (474)
+.+|+|||+|.||.++|..|+.+|++|++||++++.++...+... ..+.. ++..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 458999999999999999999999999999999998765432110 00000 12233444 4
Q ss_pred HHhhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEe-cCCCCCccc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLG-MGVSGGEEG 140 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~-~pvsgg~~~ 140 (474)
.++. +|+||+|+|+...+ ..++.++.+.++++++|+..+++. ...++++.+... |+||++ +|++++.+
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE- 155 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE- 155 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-
Confidence 4555 99999999988654 455678888888888887666554 444555555332 677777 56766654
Q ss_pred ccCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 141 ARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 141 a~~G~~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
...|+ ..+++.++.+.++++.+|..+ +++++.+.....|+++| +++|++.+.++.- .+++
T Consensus 156 v~~g~----~T~~e~~~~~~~~~~~lgk~~-------v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~ 215 (291)
T PRK06035 156 VVRAA----LTSEETFNTTVELSKKIGKIP-------IEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIK 215 (291)
T ss_pred EeCCC----CCCHHHHHHHHHHHHHcCCeE-------EEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHH
Confidence 22333 128999999999999999874 77787666666566543 4589999998755 6899
Q ss_pred HHHHHH
Q 011931 221 ELQNVF 226 (474)
Q Consensus 221 ~~~~~~ 226 (474)
+++.++
T Consensus 216 ~iD~~~ 221 (291)
T PRK06035 216 DIDEMC 221 (291)
T ss_pred HHHHHH
Confidence 999886
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=165.74 Aligned_cols=118 Identities=18% Similarity=0.288 Sum_probs=98.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHHhCCCcchhhhHHHHHHHHhhCCCCC-C
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG---ELARIWKGGCIIRAVFLDRIKKAYDRNADLA-N 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~---~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~-~ 385 (474)
+.+++||+||+||+|+|++|++++|+|.|+++.. + +|.. ++++.|+.|. ++|+++++..++|+++++.. .
T Consensus 174 ~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g~-~~S~l~ei~~~~~~~~d~~~~~ 247 (470)
T PTZ00142 174 PGSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEGI-LNSYLIEITAKILAKKDDLGEE 247 (470)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCCC-ccCHHHHHHHHHhhcccccCCC
Confidence 4689999999999999999999999999998422 3 5554 4566699985 89999999999999875432 4
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERL 435 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~ 435 (474)
.++|.+.+..-+++++ ||+|++|+++|+|+|+|++||. ++++++..|.
T Consensus 248 ~~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~ 297 (470)
T PTZ00142 248 HLVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERT 297 (470)
T ss_pred cchhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHH
Confidence 7888888888899999 9999999999999999999996 4445555443
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=148.06 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=134.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|+|||+|.||.+++..|.++|+ +|.+|||++++.+.+.+... ++..+.+..+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 24566788888877 9999999987
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccC--CCHHHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYKYIE 160 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~g--g~~~~~~~v~ 160 (474)
. .+.++++++.+.+.++++||+++++. ....+.+.+..+.+++++. .+..+..|. .++.| .+++..+.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 4 78999999999898899999999865 3445555443333344432 233455677 44555 4667889999
Q ss_pred HHHHHHhccCCCCCCceEEeCCc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKG---------GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~---------g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++|+.+|.. +++.+. |+|. ++.+.++..+.++. .++.| +++++..+++..
T Consensus 146 ~ll~~~G~~--------~~i~e~~~~~~~~l~gs~p-------a~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~ 204 (273)
T PRK07680 146 RLFSNISTP--------LVIEEDITRVSSDIVSCGP-------AFFSYLLQRFIDAA--VEETN-ISKEEATTLASE 204 (273)
T ss_pred HHHHcCCCE--------EEEChHhcchhhhhccchH-------HHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHH
Confidence 999999953 344331 3222 35555555555553 24478 999999888743
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=142.87 Aligned_cols=255 Identities=18% Similarity=0.242 Sum_probs=163.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CC--CCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GD--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~~--~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 78877776533110 00 001123445555444 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCC-ccccCC----C
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 152 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~-~i~~gg----~ 152 (474)
|+. ++++++..+.+.+.++++||...|+. ...+.+.+.+... ++.++.+...+...-...+. .+.+|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 986 78999999999888889999888875 2333444444322 33444444333211111233 344443 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVL 211 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~---------------------~~~~~~i~Ea~~l~ 211 (474)
.+..+.+.++|...+.+ +....+.-...+.|++.|... .....++.|+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~ 227 (305)
T PRK12921 155 SERTRAVRDALAGARLE-------VVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVA 227 (305)
T ss_pred CHHHHHHHHHHHhCCCC-------ceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34556666777765543 234444666778888877543 34557799999999
Q ss_pred HHhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 212 KSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 212 ~~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
++.| ++ .+.+.+.+...... ......++..+..+.+. ..+|.+.. ..++.|+++|+|+|..+
T Consensus 228 ~a~G-~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 228 RAEG-APLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILD 291 (305)
T ss_pred HHcC-CCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 76 33444444322111 12223345556655432 36777755 46899999999999885
Q ss_pred HH
Q 011931 290 ER 291 (474)
Q Consensus 290 ~r 291 (474)
.=
T Consensus 292 ~l 293 (305)
T PRK12921 292 TV 293 (305)
T ss_pred HH
Confidence 43
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=142.13 Aligned_cols=196 Identities=14% Similarity=0.232 Sum_probs=136.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC-----------CCCccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG-----------DLPLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~-----------~~~~~~~~s~~e~~ 68 (474)
+++|+|||+|.||.++|..|+.+|++|++||++++.+++..+... ..+ ..+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 468999999999999999999999999999999987766543210 000 00345677888877
Q ss_pred hhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC--
Q 011931 69 NSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-- 145 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-- 145 (474)
+. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+. .++.+.+. +.-+|+.+..... ....+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p---~~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANE---IWKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCC---CCcCCeE
Confidence 77 99999999987544 45668888888888888665555433 23333332 2334555432221 11223
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 146 SLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 146 ~i~--~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
-++ .+.++++++.+.++++.+|..+ +.+.+...|..+ |.+. ..+++|++.+.++.. .+++++.
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~Gk~p-------v~v~~d~pgfi~----nRi~---~~~~~ea~~l~~~g~-a~~~~iD 218 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIGMVP-------IVLKKEQPGYIL----NSLL---VPFLSAALALWAKGV-ADPETID 218 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCCCCCHhH----HHHH---HHHHHHHHHHHHcCC-CCHHHHH
Confidence 344 3468999999999999999763 666655556543 4543 456699999999876 8899999
Q ss_pred HHH
Q 011931 224 NVF 226 (474)
Q Consensus 224 ~~~ 226 (474)
.++
T Consensus 219 ~a~ 221 (287)
T PRK08293 219 KTW 221 (287)
T ss_pred HHH
Confidence 886
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-14 Score=136.56 Aligned_cols=192 Identities=13% Similarity=0.162 Sum_probs=131.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|+|||||+|.||.+|++.|.+.|+. +.+|||++++.+++.+... +...+.+..+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999864 5799999999888776531 14566788888887 9999999996
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (474)
+.+.+++.++ . +.++++||++..+. +...+.+.+......+..+|+.... ...|.+.+.+++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56789999977654 4555555554333456677863222 234555555543 57899999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 165 ~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
.+|..+ ++++...-..+-.+ .+..+..+.++.++..++++.| +++++..+++..
T Consensus 142 ~lG~~~--------~~~~e~~~d~~~a~-~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~ 195 (258)
T PRK06476 142 ALGTAV--------ECDSEEEYDLLAAA-SALMATYFGILETATGWLEEQG-LKRQKARAYLAP 195 (258)
T ss_pred hcCCcE--------EECChHhccceeeh-hccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 999753 23221000000000 0122223356788888899999 999999888743
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=153.55 Aligned_cols=274 Identities=9% Similarity=0.026 Sum_probs=173.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhcC---CC----CccccCCHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKEG---DL----PLFGFRDPES 66 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~~---~~----~~~~~~s~~e 66 (474)
..+||+|||.|.||+++|..|+++| |+|.+|.|+++ .++.+.+.+.+.. +. ++..++++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3578999999999999999999998 89999999986 3555554332110 00 4566788888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHHh--cccCCCEEEecCCCCchhHH---HHHHHHHH---cCCeEEecCCCCCc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSA--YMEKGDCIIDGGNEWYENTE---RREKAMAE---LGLLYLGMGVSGGE 138 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~~~---~~~~~l~~---~g~~~v~~pvsgg~ 138 (474)
+++. +|+||++||+ +.++++++++.+ .+.++.+||.++.+....+. .+.+.+.+ ..+.++..|-. ..
T Consensus 90 av~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~-A~ 164 (365)
T PTZ00345 90 AVED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV-AN 164 (365)
T ss_pred HHhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH-HH
Confidence 8887 9999999998 489999999998 78777789988877653331 22222222 22333333422 22
Q ss_pred ccccCCC-c-cccCCCHHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 139 EGARHGP-S-LMPGGSFEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 139 ~~a~~G~-~-i~~gg~~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
+-++.-+ . .+.+-|.+..+.++++|..=..++ +..-|+++-++. |....+++-.|+-.+.+...++
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~ 243 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLE 243 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHH
Confidence 3333334 3 444558888888888886422221 111133333322 4444456678999999999999
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCC---CcchHHHHhhhc--CCCccHHHHH----
Q 011931 206 EAYDVLKSVG-KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKG---DGYLVDKVLDKT--GMKGTGKWTV---- 275 (474)
Q Consensus 206 Ea~~l~~~~G-~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~---~~~~~~~i~~~~--~~k~tg~~~~---- 275 (474)
|+..++++.| +.+++++..+.- -|.+--.+.+ ++..+....+. ++..++.+.+.+ +|+-+|..++
T Consensus 244 Em~~l~~a~g~~~~~~T~~glaG---~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~ 318 (365)
T PTZ00345 244 EMKLFGKIFFPNVMDETFFESCG---LADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVY 318 (365)
T ss_pred HHHHHHHHhCCCCCccchhccch---HhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHH
Confidence 9999999997 247777765420 0221111111 11111111111 113566666665 6788888887
Q ss_pred HHHHHcCC--CcccHHH
Q 011931 276 QQAADLSV--AAPTIEE 290 (474)
Q Consensus 276 ~~a~~~gv--~~p~~~~ 290 (474)
+.++++++ ++|++..
T Consensus 319 ~l~~~~~i~~~~Pi~~~ 335 (365)
T PTZ00345 319 EVLESHDLKKEFPLFTV 335 (365)
T ss_pred HHHHHcCCCCCCCHHHH
Confidence 66889999 8998844
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=141.87 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=131.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH-----------HHhhhhcC------CCCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET-----------VERAKKEG------DLPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~~------~~~~~~~~s~~e~~~ 69 (474)
++||+|||+|.||.++|..|+++|++|++||++++++++. .+.+.... ..+++.+++.++ ++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 5689999999999999999999999999999999987532 22210000 002344556554 45
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEe-cCCCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLG-MGVSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~-~pvsgg~~~a~~ 143 (474)
. ||+||+|+|+...++ +++.++.+.++++++|+..+++.+. ..+++.+..+ ++||.. +++..+.+
T Consensus 82 ~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~~r~ig~h~~~P~~~~~~ve---- 152 (282)
T PRK05808 82 D---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI--TELAAATKRPDKVIGMHFFNPVPVMKLVE---- 152 (282)
T ss_pred c---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCCcceEEeeccCCcccCccEE----
Confidence 5 999999999876655 7778898889888888555554432 2555555321 344444 23333322
Q ss_pred CCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~--~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
++ .+++++.++.+.++|+.+|.. +++++. ..|. +.|.+. ..+++|+..+.++.- .++++
T Consensus 153 ---v~~g~~t~~e~~~~~~~l~~~lGk~-------pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv-~~~~d 213 (282)
T PRK05808 153 ---IIRGLATSDATHEAVEALAKKIGKT-------PVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGV-ATAED 213 (282)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHH
Confidence 33 346899999999999999976 466654 4444 345554 456699999998866 78999
Q ss_pred HHHHH
Q 011931 222 LQNVF 226 (474)
Q Consensus 222 ~~~~~ 226 (474)
++.++
T Consensus 214 iD~~~ 218 (282)
T PRK05808 214 IDEGM 218 (282)
T ss_pred HHHHH
Confidence 98886
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-14 Score=136.49 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=133.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|+|||+|.||..++..|.++| ++|.+|||++++.+++.+.. ++..+.+.+++++. +|+||+|+|
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVK 71 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcC
Confidence 3679999999999999999999999 78999999999888776642 14456778887776 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccCC--CHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~gg--~~~~~~~ 158 (474)
+. .+.++++.+.+.+ +++||+++++.+.. .+.+.+ ..+.+++. +|. .+.....|. .++++. +++.++.
T Consensus 72 ~~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~-~~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~ 143 (267)
T PRK11880 72 PQ-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLL-GADLPVVRAMPN--TPALVGAGMTALTANALVSAEDREL 143 (267)
T ss_pred HH-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhc-CCCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHH
Confidence 85 7999999988876 57888888876433 333333 23445554 242 222233444 355553 8899999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCCchhHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSKGGSGNFVK-MIHN--GIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW 229 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K-~v~N--~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~ 229 (474)
++.+|+.+|.. +++.+...-+.+- +..+ ++.+.+++.+.++ +.+.| +++++..+++..+
T Consensus 144 v~~l~~~lG~~--------~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~G-l~~~~a~~~~~~~ 205 (267)
T PRK11880 144 VENLLSAFGKV--------VWVDDEKQMDAVTAVSGSGPAYVFLFIEALADA---GVKLG-LPREQARKLAAQT 205 (267)
T ss_pred HHHHHHhCCeE--------EEECChHhcchHHHHhcChHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH
Confidence 99999999963 4554322112211 1111 2333344444433 66678 9999988887543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-14 Score=137.15 Aligned_cols=194 Identities=10% Similarity=0.091 Sum_probs=133.8
Q ss_pred CcEEEEcccHh--------------------HHHHHHHHHHCCCcEEEEeCChHHHH-----HHHHhhhhcCCCCccccC
Q 011931 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVD-----ETVERAKKEGDLPLFGFR 62 (474)
Q Consensus 8 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~~~~~~~~~~~~~~ 62 (474)
|||.|.|+|+- |.+||++|+++||+|++|||++++.+ .+.+.+ +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 68899999864 78999999999999999999987653 344433 56788
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHH---HHHcCCeEEe---cCCCC
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA---MAELGLLYLG---MGVSG 136 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~---l~~~g~~~v~---~pvsg 136 (474)
++.++++. +|+||+|+|++.++++++.++.+.+.+|++|||+||+.|.......+. +.++.+...+ +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988777654 3333443333 33333
Q ss_pred CcccccCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (474)
Q Consensus 137 g~~~a~~G~~i~~g--------g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~ 208 (474)
.+. ++-.++.| .++|..+++.++.++.+... +.+...=.+...-|. ....+...+.+.+-+
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~-------~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~ 219 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKA-------YVVPADVTSAVADMG-SLVTAVALAGVLDYY 219 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHH-HHHHHHHHHHHHHHH
Confidence 221 22222222 27889999999999988753 333322223333332 123334455566666
Q ss_pred HHHHHhCCCCHHHH
Q 011931 209 DVLKSVGKLTNEEL 222 (474)
Q Consensus 209 ~l~~~~G~l~~~~~ 222 (474)
..+.+.-|.+.+-+
T Consensus 220 ~~~t~i~~ap~~~~ 233 (341)
T TIGR01724 220 YVGTQIINAPKEMI 233 (341)
T ss_pred HHHHHHhcCcHHHH
Confidence 66755543554433
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-16 Score=162.03 Aligned_cols=114 Identities=11% Similarity=0.195 Sum_probs=95.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW-DLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~-~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~ 388 (474)
+.+++||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|+++++...+|++++.....++
T Consensus 171 ~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l 246 (467)
T TIGR00873 171 PDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLV 246 (467)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccH
Confidence 4689999999999999999999999999997532 32 12445566778987 6899999999999998544446788
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHh
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDS 429 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~-y~~~ 429 (474)
|.+.+..-+++++ ||+|++|+++|+|+|+|++++. ++.+
T Consensus 247 ~~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S 286 (467)
T TIGR00873 247 DKILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLS 286 (467)
T ss_pred HhhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhcc
Confidence 8888888889999 9999999999999999999996 4444
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=140.44 Aligned_cols=188 Identities=32% Similarity=0.500 Sum_probs=130.2
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccC
Q 011931 64 PESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~ 143 (474)
++++...|+.-|+||=--.. ..++.+..-...-.+|--++|++|+--..- .++|..+ +.||++.+-+
T Consensus 77 i~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~ 143 (300)
T COG1023 77 IDDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVE 143 (300)
T ss_pred HHHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHH
Confidence 34555556668988866543 455566554445567889999998752111 2345443 3455544322
Q ss_pred CC-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 144 GP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 144 G~-~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
-- .++ +.+.+ ...| ..|+|+.|+||++|||||+|+|++||+++|.+.++++.- .|.+ +
T Consensus 144 ~~~pif--------~~lA~--ge~G---------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D-~ 202 (300)
T COG1023 144 RLEPIF--------KALAP--GEDG---------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYD-L 202 (300)
T ss_pred HHHHHH--------HhhCc--CcCc---------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCC-H
Confidence 21 111 11100 0234 368999999999999999999999999999999999865 5532 3
Q ss_pred HHHHHhhccC-cchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHH
Q 011931 223 QNVFTEWNKG-ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEER 291 (474)
Q Consensus 223 ~~~~~~~~~~-~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r 291 (474)
.++.+.|+.| ..+||+++.+...+++ + .-++.+.+.+..-|+|+||+++|.++|+|+|++...
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~a 266 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALA 266 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHH
Confidence 3344458885 5789999999887764 2 257888888888999999999999999999999443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=151.83 Aligned_cols=271 Identities=11% Similarity=0.028 Sum_probs=170.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCC--------CcEEEEeC-----ChHHHHHHHHhhhhcC---CC----CccccCCHHHHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKG--------FPISVYNR-----TTSKVDETVERAKKEG---DL----PLFGFRDPESFV 68 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~~---~~----~~~~~~s~~e~~ 68 (474)
||+|||.|.||++||..|+++| |+|.+|.| +++-.+.+.+...+.. +. +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 5554554443321110 00 345667888888
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchh--HHHH-HHHHHH---cCCeEEecCCCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--TERR-EKAMAE---LGLLYLGMGVSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~~~-~~~l~~---~g~~~v~~pvsgg~~~a~ 142 (474)
+. +|+||++||+. .+++++.++.+.++++.++|.++.+.... +..+ .+.+++ ..+.++..|..- .+-++
T Consensus 81 ~~---ADiIIlAVPs~-~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPHQ-FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECChH-HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 99999999985 89999999999999899999998876544 3222 222222 223333334222 23333
Q ss_pred CCC-ccc-cCCC----HHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 143 HGP-SLM-PGGS----FEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 143 ~G~-~i~-~gg~----~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
.-| .+. .+.+ .+..+.++.+|..=-.++ +..-|+++-++. |....+.+-.|+-.+.+...++
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 334 333 4446 788888888886322211 011123333322 3444455677999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhcccccccccCCC-cchHHHHhhh--cCCCccHHHHHHH---
Q 011931 206 EAYDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGD-GYLVDKVLDK--TGMKGTGKWTVQQ--- 277 (474)
Q Consensus 206 Ea~~l~~~~G~l~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~-~~~~~~i~~~--~~~k~tg~~~~~~--- 277 (474)
|+..+++..| -+++ .+..+ .|.++-.+.-..++..+....+.. +..++.+.+. .+++-+|..+++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999999 6665 55433 121111110000111111111233 4567777777 6788888887754
Q ss_pred -HHHcCCC--cccHHHH
Q 011931 278 -AADLSVA--APTIEER 291 (474)
Q Consensus 278 -a~~~gv~--~p~~~~r 291 (474)
+++.++. +|++..=
T Consensus 309 l~~~~~i~~~~Pi~~~v 325 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEAV 325 (342)
T ss_pred HHHHcCCCcCCCHHHHH
Confidence 8889999 9988554
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-14 Score=140.36 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=152.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh--cCCC--CccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK--EGDL--PLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~~~~--~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|||+|||+|.||+.+|..|+++|++|++++|++++.+.+.+.+.. .+.. .+..+.+++++ +. +|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GP---QDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CC---CCEEEEeccc
Confidence 589999999999999999999999999999998888777654321 0000 01223445444 44 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC----CeEEecCCCCCcccccCCC-ccccCC---CHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG----LLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 155 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~v~~pvsgg~~~a~~G~-~i~~gg---~~~~ 155 (474)
. +++.++..+.+.+.++++||...|+.. ..+.+.+.+.... +.++.+-..+.......+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 6 789999999999988889999888752 2333444332221 1122211111111111122 233332 2233
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~~i~Ea~~l~~~~ 214 (474)
.+.+.++|+..+.+. ...-+.-...+.|++.|. .......++.|+..++++.
T Consensus 155 ~~~l~~~l~~~~~~~-------~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~ 227 (304)
T PRK06522 155 AEALADLLNAAGLDV-------EWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE 227 (304)
T ss_pred HHHHHHHHHhcCCCC-------CCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc
Confidence 566777777655432 222234445555555442 3344567789999999998
Q ss_pred CCCCH--HHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 215 GKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 215 G~l~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
| ++. +.+.+.+........ ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+.
T Consensus 228 G-~~~~~~~~~~~~~~~~~~~~-~~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 228 G-VHLSVEEVREYVRQVIQKTA-ANTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred C-CCCChHHHHHHHHHHhhccC-CCCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 8 653 444444433222111 122345555554332 34565543 578999999999998743
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-16 Score=159.48 Aligned_cols=117 Identities=13% Similarity=0.211 Sum_probs=96.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHhCCCcchhhhHHHHHHHHhhCCC-CCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELARIWKGGCIIRAVFLDRIKKAYDRNAD-LAN 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iW~~gcii~s~ll~~~~~~~~~~~~-l~~ 385 (474)
+.++|||+||+||+|+|++|+.++|+|.++++.. + +|. .++++.|+.|. ++|+++++..+++.+++. ...
T Consensus 163 ~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g~-~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 163 PDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKGE-LNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCCC-ccChHHHhHhHHHhcCCCCCCC
Confidence 4689999999999999999999999999999521 3 555 45566799985 899999999999987542 345
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHh-hcCCC
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDS-YRRER 434 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~-y~~~-~~~~~ 434 (474)
.++|.+.+..-+|+++ ||+|++|+++|+|+|+|++|+. ++.+ ++..|
T Consensus 237 ~~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r 285 (459)
T PRK09287 237 PLVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQR 285 (459)
T ss_pred cchHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHH
Confidence 7889999999999999 9999999999999999999996 4443 34433
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=137.52 Aligned_cols=193 Identities=22% Similarity=0.278 Sum_probs=143.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|++|||||.|+||.+|+..|.++| .+|.+.||++++.+.+.+... +..+++.++++.. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 578999999999999999999999 589999999999987766542 3346778889888 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC-ccccC--CCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~-~i~~g--g~~~~~~~ 158 (474)
+ +.+++++.++.+ ..++++||+...+.+ ...+...+. +.+++. +|.. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 8 589999999988 778999999888763 444555554 455554 4643 23334566 34443 36788889
Q ss_pred HHHHHHHHhccCCCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+..+|+.+|.....+|..+..+. -.|+|. ++.+.+++.+.++ +.+.| ++.++..++..
T Consensus 144 v~~l~~~~G~v~~v~E~~~da~TaisGSgP-------Ayv~~~iEal~~a---gv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVGKVVEVEESLMDAVTALSGSGP-------AYVFLFIEALADA---GVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcCCeEEechHHhhHHHHHhcCCH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999975433333332222 246666 4666677777776 67788 99999988864
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-14 Score=141.78 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=122.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+.++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.+. ....+.+++++++. +|+||+|+|.
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvViiavp~ 76 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVILCVPV 76 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEECCCH
Confidence 45789999999999999999999995 89999999988877665432 12344567777766 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcc-cccC-------CC-ccc---cC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GARH-------GP-SLM---PG 150 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~-~a~~-------G~-~i~---~g 150 (474)
. ....++.++.+.++++.+|+|.++......+.+.+.+ ..+++|+++ |+.|++. +... |. .++ .+
T Consensus 77 ~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~ 154 (307)
T PRK07502 77 G-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG 154 (307)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC
Confidence 6 6788888888889999999999888755544444333 346789986 8887653 2222 22 222 35
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHH
Q 011931 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (474)
Q Consensus 151 g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~ 187 (474)
++++.++.++++++.+|.+ ++++++.....
T Consensus 155 ~~~~~~~~~~~l~~~lG~~-------~~~~~~~~hD~ 184 (307)
T PRK07502 155 TDPAAVARLTAFWRALGAR-------VEEMDPEHHDL 184 (307)
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCHHHHhH
Confidence 6888999999999999986 46666644333
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-14 Score=140.75 Aligned_cols=203 Identities=12% Similarity=0.105 Sum_probs=125.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C-C--CCccccCCHHHHH-hhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G-D--LPLFGFRDPESFV-NSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~-~--~~~~~~~s~~e~~-~~l~~~dvIil 79 (474)
|||+|||+|.||+.+|..|+++|++|++|+|+++.++.+.+.+... + . .++..++++.+.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 5899999999999999999999999999999998888777642110 0 0 0233455666665 34 899999
Q ss_pred ecCCChhHHHHHHHHHh-cccCCCEEEecCCCCchh-----HHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccc-cCC
Q 011931 80 LVKAGAPVDETIKTLSA-YMEKGDCIIDGGNEWYEN-----TERREKAMAELGLLYLGMGVSGGEEGARHGP-SLM-PGG 151 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~-~gg 151 (474)
+||+. +++++++++.+ .+.++..|+.++++.... .+.+.+.+....+..+..|-.. .+.+...+ .+. .|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 99985 89999999998 888777777777776332 1222222222222222223110 12223334 333 344
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHh
Q 011931 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN-----------------GIEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N-----------------~~~~~~~~~i~Ea~~l~~~~ 214 (474)
+.+..+.+..+|..-+.+ +....+.-...+.|++-| .....+.+++.|+..++++.
T Consensus 156 ~~~~~~~l~~~l~~~~~~-------~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~ 228 (326)
T PRK14620 156 NETLGSSLISKLSNENLK-------IIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK 228 (326)
T ss_pred CHHHHHHHHHHHCCCCeE-------EEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 555445555555443322 122222333334454444 34445678899999999999
Q ss_pred CCC--CHHHHH
Q 011931 215 GKL--TNEELQ 223 (474)
Q Consensus 215 G~l--~~~~~~ 223 (474)
| . +++++.
T Consensus 229 G-~~~~~~~~~ 238 (326)
T PRK14620 229 N-GSIDLNTLI 238 (326)
T ss_pred C-CCCCcchhh
Confidence 8 6 677774
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=131.74 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=87.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|||+|||+|.+|..+|..|+++||+|++||.++++++.+.+.. ...+ ++..+++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 7999999999999999999999999999999999988765321 1111 56788888988888
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHH-HHHHcC-----CeEEecC
Q 011931 73 KPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK-AMAELG-----LLYLGMG 133 (474)
Q Consensus 73 ~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~-~l~~~g-----~~~v~~p 133 (474)
+|++|+|||++ ..++++++.+.+.++++++||..||..|++++++.. .+++.+ +++.-+|
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 99999999876 247888899999999999999999999999996654 444332 3455556
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=139.04 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=132.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|||+|.||.+||+.|.++|++|.+|++++++.+.....+... --...++++++++. ||+||+|||+. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3699999999999999999999999999999877654433322100 01134566777776 99999999985 78
Q ss_pred HHHHHHHHh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcc-c-------ccCCC-ccccC---CCH
Q 011931 88 DETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEE-G-------ARHGP-SLMPG---GSF 153 (474)
Q Consensus 88 ~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~-~-------a~~G~-~i~~g---g~~ 153 (474)
..++.++.+ .++++.+|+|.++++........+. ...+.+|++ .|+.|++. + ...|. .+++. .++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999886555444443 335678998 58888642 1 12344 33332 478
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
+.++.++++++.+|++ ++++.+......+-++... -.++++++ +...+ .+.+...++
T Consensus 153 ~~~~~v~~l~~~lGa~-------~v~~~~~~HD~~~A~vshl-----Ph~ia~al--~~~~~-~~~~~~~~l 209 (359)
T PRK06545 153 DAVAELKDLLSGTGAK-------FVVLDAEEHDRAVALVSHL-----PHILASSL--AARLA-GEHPLALRL 209 (359)
T ss_pred HHHHHHHHHHHHcCCE-------EEECCHHHHhHHHhHhccH-----HHHHHHHH--HHhhc-cCchHHHhh
Confidence 8999999999999976 4667665544444333322 23344443 45555 555444433
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-13 Score=131.84 Aligned_cols=255 Identities=14% Similarity=0.134 Sum_probs=155.9
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cCCC---CccccCCHHHHHhhcCCCcEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK----EGDL---PLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~~~~---~~~~~~s~~e~~~~l~~~dvI 77 (474)
+++|+|+|||+|.||+.+|..|+++|++|+++.|++. +.+.+.+.. .+.. .+...++++ ... .+|+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~~D~v 76 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMP---PCDWV 76 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchh-hcC---CCCEE
Confidence 3457999999999999999999999999999999863 334333211 0000 011122222 223 38999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCC-ccccC--
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPG-- 150 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~-~i~~g-- 150 (474)
|+|||.. ++.+++..+.+.+.++.+|+...|+. ...+.+.+.+.+. ++.++++...+...-...|. .+.+|
T Consensus 77 ilavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 77 LVGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred EEEecCC-ChHhHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 9999986 67888899999898889999998886 3334444444322 23333333222111111222 22222
Q ss_pred -C-C-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHH
Q 011931 151 -G-S-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQ 202 (474)
Q Consensus 151 -g-~-----~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~ 202 (474)
+ + .+..+.+..+|+..+... ....+.-..-+.|++.|. .......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~-------~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~ 227 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDS-------QAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRA 227 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCc-------eeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHH
Confidence 2 2 355666777787766542 333445555566665552 3345667
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHH
Q 011931 203 LIAEAYDVLKSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 280 (474)
Q Consensus 203 ~i~Ea~~l~~~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~ 280 (474)
++.|++.++++.| ++ .+.+..+++...... ....++.+++.+.+. ..+|.+.. +.++.|++
T Consensus 228 ~~~E~~~va~a~G-i~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~ 290 (313)
T PRK06249 228 LMAEVIQGAAACG-HTLPEGYADHMLAVTERMP--DYRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARA 290 (313)
T ss_pred HHHHHHHHHHhcC-CCCChhHHHHHHHHhhcCC--CCCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHH
Confidence 8999999999998 76 233333332222211 223455566655432 46788765 57999999
Q ss_pred cCCCcccHHHH
Q 011931 281 LSVAAPTIEER 291 (474)
Q Consensus 281 ~gv~~p~~~~r 291 (474)
+|+|+|..+.=
T Consensus 291 ~Gi~~P~~~~l 301 (313)
T PRK06249 291 AGCAMPRVEML 301 (313)
T ss_pred hCCCCcHHHHH
Confidence 99999987443
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=132.85 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=136.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... ....+.+..++++. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 578999999999999999999998 7899999864 44555443321 13345677888777 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccC--CCHHHHH
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYK 157 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~g--g~~~~~~ 157 (474)
|+. .+.+++.++.+.+.++.+||+..++... .++.+.+. +..++. +|.. +.....|.+ +..+ -+++..+
T Consensus 73 pp~-~~~~vl~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~--~~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PPL-AVLPLLKDCAPVLTPDRHVVSIAAGVSL--DDLLEITP--GLQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CHH-HHHHHHHHHHhhcCCCCEEEEECCCCCH--HHHHHHcC--CCCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHH
Confidence 974 7999999999988888899998888643 35555443 223433 4533 223345663 4443 2567788
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 158 YIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 158 ~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
.++.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.||+++++..+++.
T Consensus 146 ~v~~l~~~~G~~~~v~E~~~d~~tal~gsgP-------A~~~~~~~al~~a---~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 146 RLEETLSHFSHVMTIREENMDIASNLTSSSP-------GFIAAIFEEFAEA---AVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHHhCCCEEEEchhhCceeeeeecCHH-------HHHHHHHHHHHHH---HHHhCCCCHHHHHHHHH
Confidence 9999999999865444544433332 57777 3555666666666 55662399999888864
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=131.54 Aligned_cols=194 Identities=17% Similarity=0.138 Sum_probs=131.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC---c-EEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|||+|.||.+++..|+++|+ + +.+++| ++++.+.+.+.. ++..+.+.++++++ +|+||+++|
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiavp 75 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAMP 75 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEecC
Confidence 589999999999999999998873 3 778887 477777776543 24556788888877 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcccccCCC-ccc--cCCCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLM--PGGSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~~a~~G~-~i~--~gg~~~~~~~ 158 (474)
+. ..+++++++.+.++ +++||+++.+.... .+.+.+. .+..++ .+|-.. .....|. .+. ..++++..+.
T Consensus 76 ~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~-~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 76 PS-AHEELLAELSPLLS-NQLVVTVAAGIGPS--YLEERLP-KGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred HH-HHHHHHHHHHhhcc-CCEEEEECCCCCHH--HHHHHcC-CCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHHH
Confidence 85 78999998888775 67999998886443 3444332 222333 345322 2233444 222 3468889999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++.+|+.+|......|........ .|++ .++.+.++..+.++ +.+.| +++++..+++..
T Consensus 149 v~~lf~~~G~~~~~~e~~~~~~~a~~gs~-------pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~ 208 (245)
T PRK07634 149 LQLILKGIGTSQLCTEEEVHQLTAVTGSA-------PAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQ 208 (245)
T ss_pred HHHHHHhCCCEEEECHHHcchHHhhhcch-------HHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999753222222221111 2333 24555666666666 67788 999999888743
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=127.81 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEecCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLVKA 83 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~vp~ 83 (474)
..+++|+|||+|.||..+|..|.+.|++|++||+++.. +...+. ++..+.+.++++ .. +|+||+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~~~---aDvVilavp~ 102 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCEEH---PDVVLLCTSI 102 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhhCC---CCEEEEecCH
Confidence 34578999999999999999999999999999999642 222221 244566777775 34 8999999998
Q ss_pred ChhHHHHHHHH-HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCccc--ccCCCcc-cc-------CC
Q 011931 84 GAPVDETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEG--ARHGPSL-MP-------GG 151 (474)
Q Consensus 84 ~~~v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~--a~~G~~i-~~-------gg 151 (474)
. .+.+++.++ .+.++++.+|+|.++++-.....+.+.+. .+..|+. +|+.|.+.+ ...+..+ .. +.
T Consensus 103 ~-~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~ 180 (304)
T PLN02256 103 L-STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGE 180 (304)
T ss_pred H-HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCC
Confidence 5 788899888 67788999999999976544444444432 3567887 488877643 2233322 22 23
Q ss_pred CHHHHHHHHHHHHHHhccC
Q 011931 152 SFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~ 170 (474)
+++.++.++++++.+|+++
T Consensus 181 ~~~~~~~l~~l~~~lGa~v 199 (304)
T PLN02256 181 REARCERFLDIFEEEGCRM 199 (304)
T ss_pred CHHHHHHHHHHHHHCCCEE
Confidence 6788999999999999873
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=133.34 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHH-------HHHHHHh-------hhhcCC----------CCccccCC--HHHHHhhc
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSK-------VDETVER-------AKKEGD----------LPLFGFRD--PESFVNSI 71 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~l~~~-------~~~~~~----------~~~~~~~s--~~e~~~~l 71 (474)
||..||..++.+|++|++||++++. +++..+. ....+. -+++.+++ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 2211111 000000 03444443 5576776
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEecC-------CCCCcc
Q 011931 72 QKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLGMG-------VSGGEE 139 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~v~~p-------vsgg~~ 139 (474)
||+||.|||.+.+++..+ .++.+.++++.|| +||+++....++++.+. ..|+||++.| |++++
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999998888766 6788888888888 44554456667777662 3478888887 54443
Q ss_pred cccCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011931 140 GARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (474)
Q Consensus 140 ~a~~G~~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~ 219 (474)
+++++.++++.++++.+|.. ++++++.+ |.. .|. ....+++|++.++++.+ +++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~-------~v~v~d~~-Gfi----~nr---i~~~~l~EAl~l~e~g~-~~~ 208 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKV-------PVVCGPSP-GYI----VPR---IQALAMNEAARMVEEGV-ASA 208 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCc-------EEEecCCC-Ccc----hHH---HHHHHHHHHHHHHHhCC-CCH
Confidence 57899999999999999977 47888754 542 233 46678899999999988 999
Q ss_pred HHHHHHH
Q 011931 220 EELQNVF 226 (474)
Q Consensus 220 ~~~~~~~ 226 (474)
+++.+++
T Consensus 209 e~iD~a~ 215 (314)
T PRK08269 209 EDIDKAI 215 (314)
T ss_pred HHHHHHH
Confidence 9999987
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=126.67 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=111.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCccccCCH-HHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGFRDP-ESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~~~s~-~e~~~~l~~~dvIil~vp 82 (474)
.+++|+|+|+|.||+++|+.|.++|+.|.+++++... .+...+.+.. ...+.+. .+.+.. +|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-----d~~~~~~~~~~~~~---aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-----DELTVAGLAEAAAE---ADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-----cccccchhhhhccc---CCEEEEecc
Confidence 4678999999999999999999999998777666543 3332222210 1112222 444444 899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCc--ccccCCC-c-cccCC--CHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE--EGARHGP-S-LMPGG--SFEA 155 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~--~~a~~G~-~-i~~gg--~~~~ 155 (474)
-. .+..+++++.+.+++|.+|+|.+++.....+...+.+.+.. +|++. |+.|.+ ..-.++. . ++++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 86 88999999999999999999999998666655555554434 89885 787773 3334555 3 34443 4678
Q ss_pred HHHHHHHHHHHhcc
Q 011931 156 YKYIEDILLKVAAQ 169 (474)
Q Consensus 156 ~~~v~~ll~~lg~~ 169 (474)
++.+..+++.+|++
T Consensus 152 ~~~~~~~~~~~ga~ 165 (279)
T COG0287 152 VEEVKRLWEALGAR 165 (279)
T ss_pred HHHHHHHHHHcCCE
Confidence 89999999999987
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=124.41 Aligned_cols=166 Identities=18% Similarity=0.191 Sum_probs=112.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C--CCCcc-ccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G--DLPLF-GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-~--~~~~~-~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+||| +|.||+.++..|+++|++|.+++|++++.+.+.+..... + +.... ...+..+.++. +|+||+|+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 999999999999999999999999999988776542110 0 00011 12356677776 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchh---------------HHHHHHHHHHcCCeEEec-C-----CCCCcccc
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---------------TERREKAMAELGLLYLGM-G-----VSGGEEGA 141 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------~~~~~~~l~~~g~~~v~~-p-----vsgg~~~a 141 (474)
+. .+.+++.++.+.+. +++|||+++....+ ++.+++.+.. +.+++.+ + +..+ ...
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~~ 153 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VDD 153 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CCC
Confidence 85 78888888877665 58999999886531 1333343321 1344432 2 2222 111
Q ss_pred cCCC-ccccCCCHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHH
Q 011931 142 RHGP-SLMPGGSFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGN 187 (474)
Q Consensus 142 ~~G~-~i~~gg~~~~~~~v~~ll~~l-g~~~~~~~~~~~~~g~~g~g~ 187 (474)
..+. .+++|.|+++.+.+..|.+.+ |..+ +.+|+...+-
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~-------vd~G~l~~a~ 194 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRA-------LDAGPLENAA 194 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCc-------ccCCchhhHH
Confidence 1233 566677788889999999999 8874 7777754443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=137.55 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=109.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-hcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-SIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~-~l~~~dvIil~vp~~ 84 (474)
+.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.+.++++. . +|+||+|||+.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~~---aDvVILavP~~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEEH---PEVILLCTSIL 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhcC---CCEEEECCChH
Confidence 4579999999999999999999999999999999643 333322 2445667888764 4 89999999974
Q ss_pred hhHHHHHHHHHh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcccccCCC---c-----cccCCCHH
Q 011931 85 APVDETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP---S-----LMPGGSFE 154 (474)
Q Consensus 85 ~~v~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~~a~~G~---~-----i~~gg~~~ 154 (474)
.+..+++++.. .+++|.+|+|++++.. ...+..+.+...++.|+ .+|+.|.+.+ ..|. . .+++++.+
T Consensus 437 -~~~~vi~~l~~~~lk~g~ivvDv~SvK~-~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~ 513 (667)
T PLN02712 437 -STEKVLKSLPFQRLKRSTLFVDVLSVKE-FPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDR 513 (667)
T ss_pred -HHHHHHHHHHHhcCCCCcEEEECCCccH-HHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcc
Confidence 78888988875 5788999999999973 33344444444577888 5799987754 2331 1 23445544
Q ss_pred HH---HHHHHHHHHHhcc
Q 011931 155 AY---KYIEDILLKVAAQ 169 (474)
Q Consensus 155 ~~---~~v~~ll~~lg~~ 169 (474)
.. +.+..+++.+|++
T Consensus 514 ~~~~~~~l~~l~~~lGa~ 531 (667)
T PLN02712 514 RVSRCDSFLDIFAREGCR 531 (667)
T ss_pred hHHHHHHHHHHHHHcCCE
Confidence 44 4456888888876
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=126.29 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=130.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~~----------~~~~~~s~~e~~ 68 (474)
+.++|||||+|.||..+|..++..||+|+++|++++.+++...... ..|.. +++.++++.+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~-- 79 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA-- 79 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH--
Confidence 4578999999999999999999988999999999876554432211 00000 3444444442
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--c--CCeEEecCC-CCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--L--GLLYLGMGV-SGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~v~~pv-sgg~~~a~ 142 (474)
++.||+||.+|+....++. ++.++-...+++.|+-..+++.+.+ ++++.+.. + |+||++.|. +.-.
T Consensus 80 --l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV---- 151 (307)
T COG1250 80 --LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV---- 151 (307)
T ss_pred --hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE----
Confidence 3349999999999988774 4577777777888886666655443 34444421 1 566665432 1111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
-++.| .+++.++.+..+.+.+++. + .+...-.|..+ |.+ ...++.|++.+..+.. .+++
T Consensus 152 ---EvI~g~~T~~e~~~~~~~~~~~igK~-------~-vv~~D~pGFi~----NRi---l~~~~~eA~~l~~eGv-a~~e 212 (307)
T COG1250 152 ---EVIRGEKTSDETVERVVEFAKKIGKT-------P-VVVKDVPGFIV----NRL---LAALLNEAIRLLEEGV-ATPE 212 (307)
T ss_pred ---EEecCCCCCHHHHHHHHHHHHHcCCC-------C-EeecCCCceeh----HhH---HHHHHHHHHHHHHhCC-CCHH
Confidence 13444 3789999999999999943 1 33333445543 554 4566699999999987 9999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
++..++.
T Consensus 213 ~ID~~~~ 219 (307)
T COG1250 213 EIDAAMR 219 (307)
T ss_pred HHHHHHH
Confidence 9999874
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=110.38 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=77.1
Q ss_pred cEEEEcccHhHHHHHHHHHHCC---CcEEEE-eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKG---FPISVY-NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~vp~ 83 (474)
||||||.|+||.+|++.|.++| ++|.++ +|++++.+++.++.. +.... +..|+++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999944 999999999987653 34444 79999998 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
. .+.+++.++ +...++++|||..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 5 899999999 77889999999876
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=124.38 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=125.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.|||+|||+|.||++++..|.+++. +++++||++++. + ...+.++.++++. +|+||+|+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~-------~~~~~~~~~~~~~---~D~Vilavk 66 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P-------FVYLQSNEELAKT---CDIIVLAVK 66 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C-------eEEeCChHHHHHh---CCEEEEEeC
Confidence 4789999999999999999999873 499999987542 1 2345677787777 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccC--CCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~g--g~~~~~~~ 158 (474)
+. .+++++.++.+.+.++.+|.++++.... .+.+.+.. ....+. +| +.+.....|.+ +..+ .+++..+.
T Consensus 67 p~-~~~~vl~~i~~~l~~~~iIS~~aGi~~~---~l~~~~~~-~~~vvr~mP--n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 67 PD-LAGKVLLEIKPYLGSKLLISICGGLNLK---TLEEMVGV-EAKIVRVMP--NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred HH-HHHHHHHHHHhhccCCEEEEEeCCccHH---HHHHHcCC-CCeEEEECC--CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 75 8999999999888765555555555422 22332321 111221 23 11223334553 3333 25677889
Q ss_pred HHHHHHHHhccCCCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~ 228 (474)
++.+|+.+|......|..+.... -.|+|. ++.+.++..+.++ +.+.| ++.++..++...
T Consensus 140 v~~l~~~~G~~~~v~E~~~d~~ta~~gsgP-------A~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~ 199 (260)
T PTZ00431 140 VIDIFSACGIIQEIKEKDMDIATAISGCGP-------AYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQ 199 (260)
T ss_pred HHHHHHhCCcEEEEChHHcchhhhhcCCHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 99999999975433344333222 246665 4667777777777 67788 999999888743
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=127.06 Aligned_cols=253 Identities=12% Similarity=0.090 Sum_probs=152.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-h---cCCC-Cccc-cCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-K---EGDL-PLFG-FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~---~~~~-~~~~-~~s~~e~~~~l~~~dvIil~ 80 (474)
.|||+|||+|.||+-+|..|++.|++|++++|++++++.+.+.+. . .+.. .... ..+.++ ++.+|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~----~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADA----AEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccc----ccccCEEEEE
Confidence 478999999999999999999999999999999888887765421 0 0000 0001 111111 2348999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC-CcccccCCC-ccccCC-CH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG-GEEGARHGP-SLMPGG-SF 153 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsg-g~~~a~~G~-~i~~gg-~~ 153 (474)
|+.. ++++++..+.+.+.++++|+..-|+.. ..+.+.+.+... |+.++++...+ |.. ...|. .+.+|. +.
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~-~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v-~~~~~g~~~~G~~~~ 154 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLG-SQDAVAARVPHARCIFASSTEGAFRDGDWRV-VFAGHGFTWLGDPRN 154 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCC-CHHHHHHhCCCCcEEEEEeeeceecCCCCEE-EEeceEEEEEcCCCC
Confidence 9986 788999999999999999999999873 333344444221 11222221111 110 11122 122332 22
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhC
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~------------------~~~~~~i~Ea~~l~~~~G 215 (474)
+..+++.++|...+.+. .+..+.-...+-|++.|... ..+.+++.|+..++++.|
T Consensus 155 ~~~~~l~~~l~~ag~~~-------~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G 227 (305)
T PRK05708 155 PTAPAWLDDLREAGIPH-------EWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG 227 (305)
T ss_pred cchHHHHHHHHhcCCCC-------ccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC
Confidence 34455666676655431 23333455566777666321 134677899999999998
Q ss_pred CCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 216 KLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 216 ~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
++ .+.+.+.+........ ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~ 287 (305)
T PRK05708 228 -QPAAAANLHEEVQRVIQATA-ANYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQ 287 (305)
T ss_pred -CCccHHHHHHHHHHHHHhcc-CCCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHH
Confidence 75 2333333322111111 123455566655432 45677654 57899999999999883
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=119.13 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
||+|+|+|.|+||.++|++|++.||+|.+-+|+.+ +.+...+.... .+ ...+.+++++. +|+||++||-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~----~i-~~~~~~dA~~~---aDVVvLAVP~~- 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP----LI-TGGSNEDAAAL---ADVVVLAVPFE- 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc----cc-ccCChHHHHhc---CCEEEEeccHH-
Confidence 68999999999999999999999999999966644 44444443321 22 34577888887 99999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCc---h------------hHHHHHHHHHHc----CCeEEecCCCCCcccccC-CC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWY---E------------NTERREKAMAEL----GLLYLGMGVSGGEEGARH-GP 145 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~---~------------~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~-G~ 145 (474)
.+.+++.++...+. |+||||.++..+ . .++.+++.+... .++-+.+...-. .+.. +.
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~--~~~~~~~ 148 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLAD--LAKPGGR 148 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhcc--CCCcCCc
Confidence 78889999988775 999999999621 1 122233333221 223333322111 1112 33
Q ss_pred --ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHH
Q 011931 146 --SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (474)
Q Consensus 146 --~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~ 187 (474)
.+++|.|.++.+.+..+.+.+|... +.+|+...+.
T Consensus 149 ~~v~vagDD~~Ak~~v~~L~~~iG~~~-------ld~G~L~~a~ 185 (211)
T COG2085 149 RDVLVAGDDAEAKAVVAELAEDIGFRP-------LDAGPLENAR 185 (211)
T ss_pred eeEEEecCcHHHHHHHHHHHHhcCcce-------eecccccccc
Confidence 5667778899999999999999774 6677755554
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=119.87 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=125.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|+||.++|.+|.+.|++|.+++++.++........ ++... +.+++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~~-s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEVL-TVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCeeC-CHHHHHhc---CCEEEEcCCHH-H
Confidence 46799999999999999999999999999988766544443322 23333 88899888 99999999986 5
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCccc-----ccCCC-ccc-cCCC--HHH
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 155 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~-----a~~G~-~i~-~gg~--~~~ 155 (474)
...++ +++.+.+++|++|+.++...... .. .....++.++. +|-..+... ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~---~~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF---GQ-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh---ce-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999886555533211 11 11223444443 464444311 22455 444 5554 888
Q ss_pred HHHHHHHHHHHhccCCCCCCceEE--eCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTY--VSK------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~--~g~------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
.+.+..++..+|.... -++. ..+ -|. . -+ +-.+...++..++.++...| .+|+..
T Consensus 162 ~~~a~~l~~aiG~~~~----g~~~ttf~~e~~~dl~ge--q-~v----l~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRA----GVIETTFKEETETDLFGE--Q-AV----LCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCcc----ceeeeeecccccccchhh--H-HH----HhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 9999999999998520 0110 111 121 1 12 22345677888899999999 998864
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=134.32 Aligned_cols=119 Identities=17% Similarity=0.318 Sum_probs=98.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhhCCCC-CC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNADL-AN 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~gcii~s~ll~~~~~~~~~~~~l-~~ 385 (474)
+.+++|++||+||+++|+.|++++|+|.+++++ .++|.+++.++ |+.| ..+|+++++...++..+++. ..
T Consensus 180 ~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~-----~Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~ 253 (493)
T PLN02350 180 PGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSV-----GGLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDG 253 (493)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCC
Confidence 568999999999999999999999999999863 24898887777 9988 68999999988887655322 25
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 436 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~~~ 436 (474)
.++|....+.-+|+++ +|++++|.++|+|+|+|++++. |.++++.+|..
T Consensus 254 f~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 254 YLVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred chHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 6777777777789999 9999999999999999999985 66666665543
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=135.54 Aligned_cols=192 Identities=17% Similarity=0.193 Sum_probs=133.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~~ 68 (474)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+. .+++.+++++++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 412 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF- 412 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 3468999999999999999999999999999999988665432211 0000 045566666543
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~ 142 (474)
+. ||+||.+|+...+++ +++.++.+.++++.|+...|++.+.+ +++..+... |+||+..| ++.-.
T Consensus 413 ~~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~Lv---- 483 (737)
T TIGR02441 413 KN---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLL---- 483 (737)
T ss_pred cc---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceE----
Confidence 44 999999999988777 45588888888888887666665433 454444321 45555432 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
-++.| .++++++.+..+++.+++.+ +.+++ ..|.. .|.+. ...++|++.+.++ | ++++
T Consensus 484 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pGFi----~NRi~---~~~~~ea~~lv~e-G-v~~~ 543 (737)
T TIGR02441 484 ---EIITHDGTSKDTLASAVAVGLKQGKVV-------IVVKD-GPGFY----TTRCL---GPMLAEVIRLLQE-G-VDPK 543 (737)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHCCCeE-------EEECC-cCCch----HHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 24444 47899999999999999763 55543 55554 45554 4566999999865 6 8999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
+++.++.
T Consensus 544 ~ID~a~~ 550 (737)
T TIGR02441 544 KLDKLTT 550 (737)
T ss_pred HHHHHHH
Confidence 9999864
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=134.31 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=132.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~~~ 69 (474)
..+|+|||+|.||..||..++.+|++|++||++++.+++..+.. ...+. .+++.++++++ ++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-FE 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-hc
Confidence 46899999999999999999999999999999998765432211 00000 04556666644 34
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCcccccC
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGARH 143 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~~ 143 (474)
. ||+||.++|...+++ +++.++.+.++++.||...|++.+.+ ++++.+... |.||+..| ...-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 4 999999999987777 45588888888888887766666443 444444321 44555432 11111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 144 GPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 144 G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
-++.| .+++.++.+..+++.+|+.+ +.+. ...|. +.|.+.. .+++|++.+.++ | .++++
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lgk~p-------v~v~-d~pGf----v~nRi~~---~~~~ea~~lv~~-G-a~~e~ 522 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMGKTP-------IVVN-DCPGF----FVNRVLF---PYFAGFSQLLRD-G-ADFRQ 522 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhCCce-------EEec-CcCch----hHHHHHH---HHHHHHHHHHHc-C-CCHHH
Confidence 24555 37899999999999999763 5554 45555 4466644 456899998875 6 89999
Q ss_pred HHHHHH
Q 011931 222 LQNVFT 227 (474)
Q Consensus 222 ~~~~~~ 227 (474)
++.++.
T Consensus 523 ID~a~~ 528 (715)
T PRK11730 523 IDKVME 528 (715)
T ss_pred HHHHHH
Confidence 999874
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=116.91 Aligned_cols=150 Identities=15% Similarity=0.264 Sum_probs=97.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cCCC----------CccccCCHHHHHhhc
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGDL----------PLFGFRDPESFVNSI 71 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~~~~----------~~~~~~s~~e~~~~l 71 (474)
||+|||+|.||..+|..++.+|++|++||++++.+++..+.... .+.. ++..++++++++ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999876654432211 0000 466778888887 5
Q ss_pred CCCcEEEEecCCChhHHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCCc
Q 011931 72 QKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGPS 146 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~~ 146 (474)
+|+||.++|...+++. ++.++.+.++++.+|...|++.+.+ +++..+... |+||+..|- ..+ -.-
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~-~~~-----lVE 148 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPH-LMP-----LVE 148 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTT-T-------EEE
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccc-cCc-----eEE
Confidence 9999999999877764 5578888888899888777766433 444433211 556654331 110 002
Q ss_pred cccC--CCHHHHHHHHHHHHHHhccC
Q 011931 147 LMPG--GSFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 147 i~~g--g~~~~~~~v~~ll~~lg~~~ 170 (474)
++.| .+++.++.+..+++.+|..+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~p 174 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTP 174 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4554 37899999999999998763
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=114.71 Aligned_cols=99 Identities=22% Similarity=0.411 Sum_probs=81.6
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|||.|+||.++|..|+++|++|++|.|+++.++.+.+...... + .++..+++++++++. +|+||++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 6999999999999999999999999999999999998887653210 0 045678889999988 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.. ..+++++++.++++++.+||.++.+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 985 89999999999999999999998776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=133.63 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=133.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~~ 68 (474)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+. .+++.+++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF- 390 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 4568999999999999999999999999999999987665432110 0000 045556666443
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~ 142 (474)
+. ||+||.+||...+++ +++.++.+.++++.|+...|++.+.+ +++..+... |+||+..| ++.-.
T Consensus 391 ~~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv---- 461 (714)
T TIGR02437 391 DN---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV---- 461 (714)
T ss_pred cC---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE----
Confidence 44 999999999987777 45588888888888887766665443 444444321 45555432 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
-++.| .++++++.+..+++.+|+.+ +.+. ...|.. .|.+.. ..+.|++.+.++ | .+++
T Consensus 462 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~-d~pGfi----~NRl~~---~~~~ea~~l~~e-G-~~~~ 521 (714)
T TIGR02437 462 ---EVIRGEKSSDETIATVVAYASKMGKTP-------IVVN-DCPGFF----VNRVLF---PYFGGFSKLLRD-G-ADFV 521 (714)
T ss_pred ---eecCCCCCCHHHHHHHHHHHHHcCCEE-------EEeC-Ccccch----HHHHHH---HHHHHHHHHHHC-C-CCHH
Confidence 24444 37899999999999999763 5554 355654 466644 456999999864 6 8999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
+++.++.
T Consensus 522 ~ID~a~~ 528 (714)
T TIGR02437 522 RIDKVME 528 (714)
T ss_pred HHHHHHH
Confidence 9999874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=134.02 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=116.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|.||.+++..|.++| ++|++||+++++.+.+.+.+.. .....+..++++. +|+||+|+|+.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH
Confidence 368999999999999999999999 4899999999887776554321 1134466777766 99999999985
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcc-cc-------cCCC-c-ccc--CC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEE-GA-------RHGP-S-LMP--GG 151 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~-~a-------~~G~-~-i~~--gg 151 (474)
.+.++++++.+.++++.+|+|+++++......+.+.+....++|+. .|++|++. +. ..+. . +.+ ++
T Consensus 75 -~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 75 -AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 7899999999988899999999998866666666655444567765 68887653 11 1232 2 233 35
Q ss_pred CHHHHHHHHHHHHHHhcc
Q 011931 152 SFEAYKYIEDILLKVAAQ 169 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~ 169 (474)
+++.++.++++|+.+|.+
T Consensus 154 ~~~~~~~~~~l~~~~G~~ 171 (735)
T PRK14806 154 DPAALARVDRLWRAVGAD 171 (735)
T ss_pred CHHHHHHHHHHHHHcCCE
Confidence 788899999999999976
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-11 Score=132.28 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=131.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESF 67 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~----------~~~~~~~s~~e~ 67 (474)
.+.+|+|||+|.||..+|..++ .+|++|++||++++.+++...... ..+. .+++.++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence 3568999999999999999998 589999999999986654432110 0000 04556666653
Q ss_pred HhhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCC-CCCcccc
Q 011931 68 VNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGV-SGGEEGA 141 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pv-sgg~~~a 141 (474)
++. ||+||.++|...+++ +++.++.+.+++++|+...|++.+.+ ++++.+... |+||+..|- +.-.
T Consensus 382 ~~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV--- 453 (699)
T TIGR02440 382 FKD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV--- 453 (699)
T ss_pred hcc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE---
Confidence 444 999999999987777 45578888888888887766665443 444444322 455554331 1111
Q ss_pred cCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011931 142 RHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (474)
Q Consensus 142 ~~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~ 219 (474)
-++.| .+++.++.+..+++.+|+.+ +.+. ...|.. .|.+. ..+++|++.+.+ .| +++
T Consensus 454 ----Evv~g~~T~~~~~~~~~~~~~~~gk~p-------v~v~-d~pGfi----~nRl~---~~~~~Ea~~l~~-~G-~~~ 512 (699)
T TIGR02440 454 ----EVIPHAGTSEQTIATTVALAKKQGKTP-------IVVA-DKAGFY----VNRIL---APYMNEAARLLL-EG-EPV 512 (699)
T ss_pred ----EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEEc-cccchH----HHHHH---HHHHHHHHHHHH-CC-CCH
Confidence 24544 47899999999999999764 5554 345554 45554 456699999887 46 899
Q ss_pred HHHHHHHH
Q 011931 220 EELQNVFT 227 (474)
Q Consensus 220 ~~~~~~~~ 227 (474)
+++..++.
T Consensus 513 ~dID~a~~ 520 (699)
T TIGR02440 513 EHIDKALV 520 (699)
T ss_pred HHHHHHHH
Confidence 99999874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-11 Score=129.18 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=107.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~vp~~ 84 (474)
.+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++ .. +|+||+|||..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~~---aDvViLavP~~ 119 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCERH---PDVILLCTSII 119 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhcC---CCEEEEcCCHH
Confidence 3578999999999999999999999999999998543 222222 244566788755 44 89999999974
Q ss_pred hhHHHHHHHHH-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCccc--ccCCC-cccc----CCCH--
Q 011931 85 APVDETIKTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEG--ARHGP-SLMP----GGSF-- 153 (474)
Q Consensus 85 ~~v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~--a~~G~-~i~~----gg~~-- 153 (474)
.+..+++++. +.++++.+|+|++++.......+...+ ..++.|+.. |+.|.+.. ...+. .++. +.++
T Consensus 120 -~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~ 197 (667)
T PLN02712 120 -STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELR 197 (667)
T ss_pred -HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCcccc
Confidence 7889998886 678899999999988743333333333 346778874 88876521 12333 3333 2222
Q ss_pred -HHHHHHHHHHHHHhccC
Q 011931 154 -EAYKYIEDILLKVAAQV 170 (474)
Q Consensus 154 -~~~~~v~~ll~~lg~~~ 170 (474)
+.++.++++++.+|+++
T Consensus 198 ~~~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 198 VSRCKSFLEVFEREGCKM 215 (667)
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 34566779999999873
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=111.56 Aligned_cols=111 Identities=18% Similarity=0.312 Sum_probs=74.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+||+|||+|++|..|++.|.++||+|. +|+|+++..+++..... -..+.++.|+++. +|+||++||++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH
Confidence 35799999999999999999999999997 55899887777765432 1334566777776 99999999997
Q ss_pred hhHHHHHHHHHhc--ccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAY--MEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
.+..+.++|... ..+|++|+++|.....+..+. ++++|...
T Consensus 80 -aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~ 122 (127)
T PF10727_consen 80 -AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIV 122 (127)
T ss_dssp -HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EE
T ss_pred -HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeE
Confidence 899999999887 789999999999876554433 44566543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=120.62 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=105.1
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.++|+|||+ |.||+++|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 468999999 99999999999864 899999998511 23466777776 99999999986
Q ss_pred hhHHHHHHHHHhc---ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcc-cccCCC-ccc-cCCCHHHHH
Q 011931 85 APVDETIKTLSAY---MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~-~a~~G~-~i~-~gg~~~~~~ 157 (474)
.+.+++.++.+. ++++.+|+|.++++....... ...+..|++. |+.|.+. +..+|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899988875 789999999999984433332 3446679985 8887754 334566 444 444556678
Q ss_pred HHHHHHHHHhcc
Q 011931 158 YIEDILLKVAAQ 169 (474)
Q Consensus 158 ~v~~ll~~lg~~ 169 (474)
.++.+++.+|++
T Consensus 138 ~v~~l~~~~Ga~ 149 (370)
T PRK08818 138 WVQSLCSALQAE 149 (370)
T ss_pred HHHHHHHHcCCE
Confidence 899999999987
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=115.47 Aligned_cols=253 Identities=16% Similarity=0.173 Sum_probs=159.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCC----ccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLP----LFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~-~~~----~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+|+|+|.||+-++..|+++|++|+++.|++. ++++.+.+-..- ..+ .....+..+. +..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~---~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEA---LGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhh---cCCCCEEEEEec
Confidence 6899999999999999999999999999998876 777776542100 001 0111111222 224999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC--CcccccCCC-c--cccCCCH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG--GEEGARHGP-S--LMPGGSF 153 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsg--g~~~a~~G~-~--i~~gg~~ 153 (474)
+. ++++++..+.+.+.+.+.|+-.-|+.. ..+.+.+.+... |+.+.++--.+ .......|. . .+.|+.+
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~g-~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGLG-HEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCCc-HHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 97 899999999999999999998888873 333455544332 22222221111 111111233 1 2344566
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN---------------------GIEYGDMQLIAEAYDVLK 212 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N---------------------~~~~~~~~~i~Ea~~l~~ 212 (474)
+.++.+.++|+..+.+. .+..+.-...+.|++.| .......+++.|....+.
T Consensus 155 ~~~~~i~~~~~~a~~~~-------~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 227 (307)
T COG1893 155 ELVKALAELFKEAGLEV-------ELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVAR 227 (307)
T ss_pred HHHHHHHHHHHhCCCCe-------EEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHH
Confidence 77888888887766552 33344566666676666 344456778899999999
Q ss_pred HhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 213 SVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 213 ~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+.| +. .+.+.+++....... .....++.++..+.+. ..+|.+.. ..++.|+++|+++|..+
T Consensus 228 ~~g-~~~~~~~~~~v~~~~~~~~-~~~~sSM~qDl~~gr~-----tEid~i~G---------~vv~~a~~~gi~~P~~~ 290 (307)
T COG1893 228 AEG-VELPEEVVERVLAVIRATD-AENYSSMLQDLEKGRP-----TEIDAING---------AVVRLAKKHGLATPVND 290 (307)
T ss_pred hcc-CCCCHHHHHHHHHHHHhcc-cccCchHHHHHHcCCc-----ccHHHHhh---------HHHHHHHHhCCCCcHHH
Confidence 987 54 433444443222221 1223344555544322 36777754 47899999999999883
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-12 Score=107.01 Aligned_cols=94 Identities=23% Similarity=0.297 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc-ccccccCCCcchHHHHh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-FGIKDDKGDGYLVDKVL 262 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~-l~~~~~~~~~~~~~~i~ 262 (474)
|+|+.+|+++|.+.+..+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 6788899999988763 443 4588999999999
Q ss_pred hhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 263 DKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 263 ~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
||+. ++.+.|++.|+|+|+.
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~ 95 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLG 95 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHH
T ss_pred cHHH------HHHHHHHHcCCCCHHH
Confidence 9998 9999999999999999
|
... |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-11 Score=130.42 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=131.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESF 67 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~----------~~~~~~~s~~e~ 67 (474)
...+|+|||+|.||..+|..++ .+|++|++||++++.+++..+.. ...+. .+++.+++++ .
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-G 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-H
Confidence 3568999999999999999999 88999999999988665532211 00000 0455666664 3
Q ss_pred HhhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCccccc
Q 011931 68 VNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGAR 142 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~ 142 (474)
++. ||+||.++|....++ +++.++.+.++++.|+...|++.+.+ ++++.+... |+||+..|-. .
T Consensus 387 ~~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~------~ 455 (708)
T PRK11154 387 FKH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEK------M 455 (708)
T ss_pred hcc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCcccc------C
Confidence 444 999999999987777 45578888888998887777666543 444444322 4454432210 0
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
.-.-++.| .+++.++.+..+++.+|..+ +.+. ...|.. .|.+. ..+++|++.+.++ | ++++
T Consensus 456 ~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~-d~pGfi----~nRl~---~~~~~EA~~lv~e-G-v~~~ 518 (708)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTP-------IVVR-DGAGFY----VNRIL---APYINEAARLLLE-G-EPIE 518 (708)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHcCCce-------EEEe-ccCcHH----HHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 11124544 47999999999999999763 4553 355554 35554 4556999999886 6 8999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
++..++.
T Consensus 519 dID~a~~ 525 (708)
T PRK11154 519 HIDAALV 525 (708)
T ss_pred HHHHHHH
Confidence 9998864
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=114.04 Aligned_cols=189 Identities=11% Similarity=0.048 Sum_probs=119.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|||||+|+||.++|++|.+.|++|+++++. +++.+.+.+.+ +.. .+..++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 57999999999999999999999998876554 44455544322 343 357888887 9999999998656
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCcc-----cccCCC-ccc-cCC--CHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE-----GARHGP-SLM-PGG--SFEAY 156 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~~-----~a~~G~-~i~-~gg--~~~~~ 156 (474)
...+++++.+.++++. +|..+.+... ......+ ..++..+ -+|-..+.. ....|. .++ ++. +.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~i--~~~~~~~-~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFNI--HFVQIVP-PKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCccH--hhccccC-CCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 7777788988888776 5666655432 2222222 2344444 366544421 003455 443 433 67788
Q ss_pred HHHHHHHHHHhcc-------C---CCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 157 KYIEDILLKVAAQ-------V---PDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 157 ~~v~~ll~~lg~~-------~---~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
+.+..+|+.+|.. . ...|..+-... -.|+++. .+..+.|++ .+.| ++++....+
T Consensus 149 ~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa-----------~v~~~~eal---v~~G-~~~e~A~~~ 213 (314)
T TIGR00465 149 AIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTA-----------LIKAGFDTL---VEAG-YQPELAYFE 213 (314)
T ss_pred HHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHH-----------HHHHHHHHH---HHcC-CCHHHHHHH
Confidence 9999999999975 1 11122111111 1355553 222333554 5778 999987766
Q ss_pred H
Q 011931 226 F 226 (474)
Q Consensus 226 ~ 226 (474)
.
T Consensus 214 ~ 214 (314)
T TIGR00465 214 T 214 (314)
T ss_pred H
Confidence 4
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-10 Score=113.92 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=93.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+|||++...+..... ++....+++++++. ||+|++++|...+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986332222111 24445689999888 99999999999899
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ ++.+..+++|.++|+++.+...+...+.+.|+...+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9988 5688889999999999999999999999999876554
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-10 Score=112.76 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=93.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+++|+.|...|++|.+||++++..... .....+++++++. +|+|++++|...+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999997653221 1234578899887 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
..++ .++++.+++|.++|+++.+...+...+.+.|.+..+.....-|.
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~ 261 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence 7666 67788899999999999999889999999887655544433343
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-10 Score=112.03 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=94.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+||+++...+...+. ++....+++++++. ||+|++++|..++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999985433222221 23445689999988 99999999999899
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+.++ .+++..+++|.++|+++.+...+...+.+.|++..+...
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GA 313 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGY 313 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEE
Confidence 9888 568888999999999999999999999999987655433
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-09 Score=104.08 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cCCC---CccccCCHHHHHhhcCCCcEEEEecCCChhHHHH
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK----EGDL---PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDET 90 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~~~~---~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~v 90 (474)
||+.+|..|+++|++|++++|+ ++.+.+.+.+-. .+.. .+...+++++ .. .+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~---~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LP---PADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cC---CCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 666766654311 0000 0112223333 23 489999999986 78999
Q ss_pred HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC----CeEEecCCCCCcccccCCC-ccccCC---CHHHHHHHHHH
Q 011931 91 IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG----LLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYKYIEDI 162 (474)
Q Consensus 91 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~v~~pvsgg~~~a~~G~-~i~~gg---~~~~~~~v~~l 162 (474)
++.+.+.+.++++|+...|+.. ..+.+.+.+.... +.++.+-..+...-...+. .+..|. +.+..+.+.++
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g-~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLG-HEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCC-CHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 9999999999999999888863 3334444443221 1122221111001111122 233443 22445556666
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhCCCC--H
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSVGKLT--N 219 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~~i~Ea~~l~~~~G~l~--~ 219 (474)
|+..+.+ +....+.-...+.|++.|. .......++.|+..++++.| ++ .
T Consensus 155 l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~ 226 (293)
T TIGR00745 155 LNEAGIP-------AELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPD 226 (293)
T ss_pred HHhCCCC-------CEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 6665533 1233334445555555442 33455678999999999988 76 3
Q ss_pred HHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 220 EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
+.+.+.+......... ...++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+.
T Consensus 227 ~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 227 DEVEELVRAVIRMTAE-NTSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHHhcCCC-CCChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 3344444333221111 11234445544322 35677654 578999999999998743
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=110.33 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=90.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.|...|++|.+|||++.... ....+ .. ..++++++++ +|+|++++|...+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~-------~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELG-------AE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcC-------CE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999865432 11111 22 3578999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|++|.+...+...+.+.+++..+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 8888 5788889999999999999999999999988765443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-10 Score=99.03 Aligned_cols=119 Identities=23% Similarity=0.225 Sum_probs=86.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..++|+|||+|.||..++..|.+.| ++|+++||++++.+++.+...... ......+..+++++ +|+||+|+|++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCC
Confidence 3468999999999999999999986 789999999998888776542100 00133456666555 99999999997
Q ss_pred hh-HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 85 AP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 85 ~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.. ++.+... ...++++.+++|+++.++. + .+.+.+++.|+++++.
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 93 MKPGDELPLP-PSLLKPGGVVYDVVYNPLE-T-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCCC-HHHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCceeCC
Confidence 53 2222211 1236789999999988544 4 7777788888877753
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=100.06 Aligned_cols=193 Identities=13% Similarity=0.189 Sum_probs=126.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-------C------C---C------CccccCCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-------G------D---L------PLFGFRDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-------~------~---~------~~~~~~s~ 64 (474)
+..|+|||.|.||+.+|+.-+..|++|.++|++++.+.+..+..... + . + ++..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 45799999999999999999999999999999998776554322110 0 0 0 34556677
Q ss_pred HHHHhhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEec-CCCCCc
Q 011931 65 ESFVNSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGM-GVSGGE 138 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~-pvsgg~ 138 (474)
.+++.. +|+||.++-....++.-+ .++-...++..+++..+++. . ..+++..++. .|.||+.. ||+--.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl-~-lt~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL-S-LTDIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccce-e-HHHHHhhccChhhhceeeccCCchhHHHh
Confidence 777776 899988887665555433 44544455555555444332 2 2234333322 27788764 554433
Q ss_pred ccccCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011931 139 EGARHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGK 216 (474)
Q Consensus 139 ~~a~~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~ 216 (474)
+ ++-+ .+++.+..+..+-+.+|... .....-.|.. .|.+ .+-.+.|+.++.++.-
T Consensus 166 E-------Vir~~~TS~eTf~~l~~f~k~~gKtt--------VackDtpGFI----VNRl---LiPyl~ea~r~yerGd- 222 (298)
T KOG2304|consen 166 E-------VIRTDDTSDETFNALVDFGKAVGKTT--------VACKDTPGFI----VNRL---LIPYLMEAIRMYERGD- 222 (298)
T ss_pred h-------hhcCCCCCHHHHHHHHHHHHHhCCCc--------eeecCCCchh----hhHH---HHHHHHHHHHHHHhcC-
Confidence 3 2222 36888888888888888753 2222334443 3444 5677799999999987
Q ss_pred CCHHHHHHHHH
Q 011931 217 LTNEELQNVFT 227 (474)
Q Consensus 217 l~~~~~~~~~~ 227 (474)
.+-+++...++
T Consensus 223 AskeDIDtaMk 233 (298)
T KOG2304|consen 223 ASKEDIDTAMK 233 (298)
T ss_pred CcHhhHHHHHh
Confidence 99999988873
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-09 Score=101.50 Aligned_cols=138 Identities=20% Similarity=0.357 Sum_probs=94.3
Q ss_pred HHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhccc
Q 011931 22 LALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYME 99 (474)
Q Consensus 22 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~ 99 (474)
+|+.|.++| ++|++||++++..+...+.+.. ....+..+.+.. +|+||+|||.. .+..++.++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------~~~~~~~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII------DEASTDIEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------SEEESHHHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------eeccCCHhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 578899999 7899999999988777665531 222222556666 99999999985 78999999999999
Q ss_pred CCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcc----cc----cCCC-cc-ccCC--CHHHHHHHHHHHHHH
Q 011931 100 KGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE----GA----RHGP-SL-MPGG--SFEAYKYIEDILLKV 166 (474)
Q Consensus 100 ~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~----~a----~~G~-~i-~~gg--~~~~~~~v~~ll~~l 166 (474)
++.+|+|.++++-.....+.+.+. .++.|++. |+.|.+. .+ ..|. .+ +++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998665555555443 67889985 7777621 11 2455 33 3343 568899999999999
Q ss_pred hccC
Q 011931 167 AAQV 170 (474)
Q Consensus 167 g~~~ 170 (474)
|+++
T Consensus 150 Ga~~ 153 (258)
T PF02153_consen 150 GARV 153 (258)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9873
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=107.40 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=91.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. ||+|++++|..++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999988889999999998432 111 0124589999887 99999999999888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
+.++ .+.+..+++|.++|++|.+...+...+.+.+++..+.....-|.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 8888 56778899999999999999999999999988754543333343
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=99.75 Aligned_cols=111 Identities=12% Similarity=0.209 Sum_probs=88.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.+|+.+|+.|...|.+|.+|||+..........+ + ...+++|+.+. +|+|++++|...+
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~ 104 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPE 104 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTT
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhccccc
Confidence 35799999999999999999999999999999987655333222 2 45699999998 9999999998777
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 105 T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 105 TRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred cceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 77666 5677889999999999999888888888888765444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=107.88 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=90.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+||+++++...+. ......+++++++. ||+|++++|...+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5799999999999999999999999999999765421111 01223578888887 99999999999898
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+..
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~g 247 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKG 247 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeee
Confidence 8888 46788899999999999999888889998887765543
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=107.72 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=88.5
Q ss_pred cCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-++|||||+|.||+.+|+.|+ ..|++|.+||+++.... . .. +....+++++++. +|+|++++|...
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-------~~~~~~l~ell~~---aDvIvl~lP~t~ 212 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-------VDYKDTIEEAVEG---ADIVTLHMPATK 212 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-------ccccCCHHHHHHh---CCEEEEeCCCCc
Confidence 358999999999999999994 56889999999875421 1 11 2345689999888 999999999987
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
..+.++ .+..+.+++|.++|++|.+...++..+.+.+.+..+.
T Consensus 213 ~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 213 YNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred chhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 776655 4677889999999999999999999999988765543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=95.83 Aligned_cols=127 Identities=23% Similarity=0.300 Sum_probs=88.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++++.+... ....+ .+++... .+|+++.|.....-.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g------~~~v~-~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG------ATVVA-PEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEEc-chhhccc--cCCEEEecccccccC
Confidence 67999999999999999999999999999999998888776421 23333 3444431 399998775544222
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCC-CCCcccccCCCccccCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGV-SGGEEGARHGPSLMPGGS 152 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pv-sgg~~~a~~G~~i~~gg~ 152 (474)
+.. ++.+ +.++|++.+|....+ .+..+.|+++|+.|++ ... +||. ..+...++++.
T Consensus 100 ~~~----~~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~ 157 (200)
T cd01075 100 DDT----IPQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGN 157 (200)
T ss_pred HHH----HHHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCc
Confidence 233 3334 367999999987543 5777888999999987 333 4432 22334455654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.4e-08 Score=93.39 Aligned_cols=210 Identities=14% Similarity=0.176 Sum_probs=146.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhh---cC---------CCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EG---------DLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~---~~---------~~~~~~~~s~~e~~~~l~ 72 (474)
|+||+-||+|.+|.+-...++-+ ..+|+++|.+..++.++....-. .| +.++...++.+..+..
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 57899999999999987776644 24789999998887665421100 00 1145566788888887
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHH--HcCCeE--EecCC
Q 011931 73 KPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA--ELGLLY--LGMGV 134 (474)
Q Consensus 73 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g~~~--v~~pv 134 (474)
+|+||++|.++. .+++....+.......+||+.-||++...++.+.+.+. .+|++| +.-|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999996652 24455556666667789999999999999988888874 345554 33342
Q ss_pred CCCcc---cccCCC-ccccCC--CHHHHHHHHH---HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011931 135 SGGEE---GARHGP-SLMPGG--SFEAYKYIED---ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (474)
Q Consensus 135 sgg~~---~a~~G~-~i~~gg--~~~~~~~v~~---ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~ 205 (474)
+-.+. .....| .++.|| +++-.+.++. +++.+-.+ . -+.....-+++..|++.|++.+.-+..++
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~-----~-~iittntwsselsklaanaflaqrissin 231 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPR-----E-QIITTNTWSSELSKLAANAFLAQRISSIN 231 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcc-----c-ceeeccccHHHHHHHHHHHHHHHHHhhhH
Confidence 22111 112234 567787 4555555544 44444322 1 23445579999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011931 206 EAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 206 Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
-+.++|++.| .+..++...+
T Consensus 232 s~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 232 SMSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred HHHHHHHhcC-CCHHHHHHHh
Confidence 9999999999 9988887765
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=103.40 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=70.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||.++|++|...|++|.+||+.....+.....+ +.. .+++|+++. +|+|++++|++ ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999997644333332222 333 489999998 99999999986 44
Q ss_pred HHHH-HHHHhcccCCCEEEecC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~s 108 (474)
..++ +++++.+++|.+++-.-
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECC
Confidence 7777 57999999999776543
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=92.57 Aligned_cols=204 Identities=16% Similarity=0.249 Sum_probs=130.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-----------hhhcCCC-------CccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----------AKKEGDL-------PLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------~~~~~~~-------~~~~~~s~~e~~ 68 (474)
.-||+|+|.|.+|+++|..|+..||+|..||..++.+....+. +...|.+ .+..++++.|++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 3579999999999999999999999999999998765433221 1111111 355788999999
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC--
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-- 145 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-- 145 (474)
+. +=.|-.|+|.+-.++.-+ .++-..+. ..+|+..||+..-... ...-+..+.-..+..||-.. -.=|
T Consensus 83 k~---Ai~iQEcvpE~L~lkk~ly~qlD~i~d-~~tIlaSSTSt~mpS~-~s~gL~~k~q~lvaHPvNPP----yfiPLv 153 (313)
T KOG2305|consen 83 KG---AIHIQECVPEDLNLKKQLYKQLDEIAD-PTTILASSTSTFMPSK-FSAGLINKEQCLVAHPVNPP----YFIPLV 153 (313)
T ss_pred hh---hhhHHhhchHhhHHHHHHHHHHHHhcC-CceEEeccccccChHH-HhhhhhhhhheeEecCCCCC----cccchh
Confidence 98 888888999886666544 44444444 4555555555433332 22333333333455554211 0111
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 146 SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 146 ~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
-+++. .+++.+++.+.+.+.+|.++ +.+-.+ --|. +.|.+.|++ ++|.+.|+...+ ++..++.
T Consensus 154 ElVPaPwTsp~tVdrt~~lM~sigq~p------V~l~re-i~Gf----~lnriq~Ai---lne~wrLvasGi-l~v~dvD 218 (313)
T KOG2305|consen 154 ELVPAPWTSPDTVDRTRALMRSIGQEP------VTLKRE-ILGF----ALNRIQYAI---LNETWRLVASGI-LNVNDVD 218 (313)
T ss_pred eeccCCCCChhHHHHHHHHHHHhCCCC------cccccc-cccc----eeccccHHH---HHHHHHHHHccC-cchhhHH
Confidence 13333 47889999999999999764 333333 2232 236666554 599999999877 9988888
Q ss_pred HHHHhhccCcchhh
Q 011931 224 NVFTEWNKGELLSF 237 (474)
Q Consensus 224 ~~~~~~~~~~~~s~ 237 (474)
.++ +.|.+-.|
T Consensus 219 ~Vm---S~GLG~RY 229 (313)
T KOG2305|consen 219 AVM---SAGLGPRY 229 (313)
T ss_pred HHH---hcCCCcch
Confidence 886 45544333
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=98.93 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=88.3
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+++++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+++++++.+. +|+|++|
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vvi~ 74 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVVEA 74 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEEEC
Confidence 35568999999999999999999873 78876 889999988877664321 2356789999876 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE-EecCCCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY-LGMGVSGG 137 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-v~~pvsgg 137 (474)
+|+. ...++...+ ++.|..|+..+.......+++.+.+++.|..+ +..+-.++
T Consensus 75 tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 75 APAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred CCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 9986 445554443 45676666666554456677777778888765 54443333
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-08 Score=94.00 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=118.6
Q ss_pred CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 30 GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 30 G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
-++|.+|+|++++.+.+.+.. ++..+.+..++++. +|+||+||++ .++++++.++.+.+.++++||++.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988887653 24567788888887 9999999995 6899999999887777899999999
Q ss_pred CCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeC-Cch
Q 011931 110 EWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVS-KGG 184 (474)
Q Consensus 110 ~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~gg--~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g-~~g 184 (474)
+.+. ..+.+.+.. +..++. +|-. +.....|.+ +..+. +++..+.++.+|+.+|......|..+-... -.|
T Consensus 79 gi~~--~~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsg 153 (245)
T TIGR00112 79 GVTL--EKLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSG 153 (245)
T ss_pred CCCH--HHHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhcc
Confidence 8743 344444432 223443 4532 223345663 44442 566778899999999975322232222111 134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 185 ~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+|. ++.+.+++.+.++ +.+.| +++++..++..
T Consensus 154 sgP-------A~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 154 SGP-------AYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred CcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 554 5677777777777 67778 99999988874
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-07 Score=87.70 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=135.1
Q ss_pred cCcEEEEcccHh--------------------HHHHHHHHHHCCCcEEEEeCChHHHHHH-HHhhhhcCCCCccccCCHH
Q 011931 7 LTRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVDET-VERAKKEGDLPLFGFRDPE 65 (474)
Q Consensus 7 ~~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~~~~~~~~~~~~~~s~~ 65 (474)
+|||+|.|+|+- |..||..++++||+|.+.|+|.+-.+.- -+..... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 578999999974 6789999999999999999886643322 2222222 478888999
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHH-HHHHHH--Hc--CCe-EEecCCCCCcc
Q 011931 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTER-REKAMA--EL--GLL-YLGMGVSGGEE 139 (474)
Q Consensus 66 e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~--~~--g~~-~v~~pvsgg~~ 139 (474)
++++. .++.++-+|-+...-.+..+|+++++.|.+|.++.|.+|..... +...|+ .+ |+. +..++|-|.|.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 99888 99999999999888889999999999999999999988765433 233332 22 332 22334544442
Q ss_pred cccCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 140 GARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (474)
Q Consensus 140 ~a~~G~~i~~g--------g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~ 211 (474)
+|-.++.| .+++..+++.++.++.|..+ +.+ +..--+.+-=..-.+.+..++.+.+-+...
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~-------yv~-padv~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKEV-------YVL-PADVVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCce-------Eec-CHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333332 25788899999999999762 333 322222222122234455677788888888
Q ss_pred HHhCCCCHHHHHH
Q 011931 212 KSVGKLTNEELQN 224 (474)
Q Consensus 212 ~~~G~l~~~~~~~ 224 (474)
++.-|.+.+.+.+
T Consensus 224 ~qIi~AP~eMIek 236 (340)
T COG4007 224 TQIIGAPKEMIEK 236 (340)
T ss_pred HHHhCCcHHHHHH
Confidence 8654366555443
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=100.13 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=89.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH--------HhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV--------ERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~--------~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++|||||+|.||+.+|+.|...|.+|++|||+..+..... ..... ......++++++++ +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD----EKGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc----ccCcccCHHHHHhh---CCEEEE
Confidence 5799999999999999999999999999999843211110 00000 00134578899888 999999
Q ss_pred ecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
++|.....+.++ .+.+..+++|.++|+++-+..-+...+.+.|....+..
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~g 283 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGG 283 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 999888888877 56788899999999999998888888988887654443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=108.20 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=91.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.|...|++|.+||+.... +...+. ++...++++++++. ||+|++++|...+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986321 111111 23445689999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+.++ .+.+..+++|.++|+++.+..-+...+.+.|++..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999999999998765543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-08 Score=94.11 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=110.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|||||.|+||+-+|..|.++||.|.++||+. ...+.+..+ ....+.+.++++. .+|+|++|+... .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 479999999999999999999999999999986 445554432 3456778888775 599999999875 78
Q ss_pred HHHHHHHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcc-cccC--CCccc----cCCC----HHH
Q 011931 88 DETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE-GARH--GPSLM----PGGS----FEA 155 (474)
Q Consensus 88 ~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~-~a~~--G~~i~----~gg~----~~~ 155 (474)
+.++...-+. ++.|++++|..+..........+.| .+.+..+-+.-+.||+ .... |-.++ -.|. ++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYL-PkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYL-PKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhC-ccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777666 8899999999988755554555555 3467667653334444 3222 22222 1233 778
Q ss_pred HHHHHHHHHHHhccC
Q 011931 156 YKYIEDILLKVAAQV 170 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~ 170 (474)
++.+.++|...+.+.
T Consensus 201 cE~fleIf~cegckm 215 (480)
T KOG2380|consen 201 CEFFLEIFACEGCKM 215 (480)
T ss_pred HHHHHHHHHhcCCeE
Confidence 899999999988774
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=100.04 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=90.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|..+...|++|.+||+...+-..... ......++++++++ ||+|++.+|-....
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 57999999999999999999999999999994332211111 23456789999998 99999999999888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 8888 567778999999999999998888899888876534
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=107.09 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=89.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+.|...|++|.+||++... +..... ++... +++++++. ||+|++++|..++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 111211 13334 89999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+.++ .+.+..+++|.++|+++.+...+...+.+.+++..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 8888 678888999999999999999999999998876544
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=88.50 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=65.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..++..+.+ +. ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 4799999999999999999999999999998876 444444433 33 4588999998 99999999985 5
Q ss_pred HHHHH-HHHHhcccCCCEEEecCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st 109 (474)
..+++ +++.|.|++|++++-...
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCc
Confidence 56676 889999999998875443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=101.51 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=88.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~-- 85 (474)
++|||||+|.||+.+|+.+...|++|.+||+.....+ . .....++++++++ ||+|++++|...
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----G-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----c-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 5799999999999999999999999999998643211 1 1234589999888 999999999754
Q ss_pred --hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 --PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
....++ .+.+..+++|.++|+++.+...+...+.+.+.+..+.....-|.-
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e 235 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE 235 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 355555 567788999999999999999999999988876544333333433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-08 Score=96.97 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=88.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+|||+.... .. .+ ...+++++++. ||+|++++|...+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999974321 11 12 24489999888 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 5677889999999999999988999999988765554
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-08 Score=96.70 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=93.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+++||||+|.+|+.+|+++...|.+|..|||++. .+..+.. +.... +++|++++ +|+|++.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~-~l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYV-DLDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceec-cHHHHHHh---CCEEEEeCCCChHH
Confidence 5799999999999999999988899999999975 2222221 12334 49999998 99999999999888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
..++ .+.+..+++|.++|+++-+...+...+.+.|++..+.-...-|.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 8888 56778899999999999999999999999998765543333333
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=97.24 Aligned_cols=100 Identities=38% Similarity=0.705 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHhhccCc-chhhhHhhhcccccccccCCCcchHHHHhh
Q 011931 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (474)
Q Consensus 186 g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G-~l~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~ 263 (474)
|+++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.+. ++||++++..+++.+++ .++.+.+
T Consensus 167 ~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~~ 237 (298)
T TIGR00872 167 GHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFSG 237 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHHH
Confidence 689999999999999999999999999974 2799998887 78876 69999999999887642 3566777
Q ss_pred hcCCCccHHHHHHHHHHcCCCcccHHHHHHH
Q 011931 264 KTGMKGTGKWTVQQAADLSVAAPTIEERVEA 294 (474)
Q Consensus 264 ~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~ 294 (474)
.+.++++++|++..|.+.|+|+|++...+..
T Consensus 238 ~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~ 268 (298)
T TIGR00872 238 RVSDSGEGRWTVIAAIDLGVPAPVIATSLQS 268 (298)
T ss_pred HHHhhccHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7778999999999999999999999665443
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-08 Score=100.64 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=90.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+++... .. .+....+++++++. ||+|++++|...+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 479999999999999999999999999999874311 01 13345689999988 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+.++ .+.+..+++|.++|+++.+..-+...+.+.|++..+..
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 260 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAG 260 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceE
Confidence 8888 56788899999999999999999999999998765543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=94.18 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=88.3
Q ss_pred CcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|||||+|.+|+.+|+.+. ..|.+|.+||+...... .... +.. ..++++++++ ||+|++++|...+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 78899999998743211 1111 122 3489999988 9999999999888
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5678889999999999999988999999988765443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=94.03 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=87.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+.... .. . ...+++++++. ||+|++++|...+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 57999999999999999999999999999986321 00 1 13478999888 99999999998888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 5678889999999999999888888999988765443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=94.70 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=87.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+.... .. . ....+++++++. ||+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~--------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R--------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c--------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 57999999999999999999999999999986421 00 0 123579999988 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 5677889999999999999988999999988866554
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=92.02 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
||||||||+|.||..++..+.+. +++ +.++|+++++.+++.+.. +...++++++++.. +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 47999999999999999999876 455 458999999988876643 24567789988765 9999999987
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~v~~p 133 (474)
. ...++...++ +.|.-++..|.. .+...+++.+..++.|.. +++.+
T Consensus 72 ~-~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sg 121 (265)
T PRK13304 72 N-AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSG 121 (265)
T ss_pred H-HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCc
Confidence 5 5555555444 345555555552 333455666666677754 44443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=91.94 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=80.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|||+|.||..+|+.|...|.+|+++||++++.+++.+.+.. .....++.+++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 579999999999999999999999999999999877665443211 1112244555555 99999999874 11
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
. .+..+.++++.+|||.++.+-.+.. +..++.|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 3455678899999999997644332 45567788776554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-08 Score=97.42 Aligned_cols=106 Identities=11% Similarity=0.142 Sum_probs=84.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|+.|...|.+|.+||+..... .. .....++++++++ ||+|++.+|-...
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~------~~------~~~~~~L~ell~~---sDiI~lh~PLt~~ 180 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR------GD------EGDFRSLDELVQE---ADILTFHTPLFKD 180 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc------cc------ccccCCHHHHHhh---CCEEEEeCCCCCC
Confidence 3579999999999999999999999999999753210 10 1124589999988 9999999996543
Q ss_pred ----HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 87 ----VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 87 ----v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
...++ .+.+..+++|.++|+++-+...+...+.+.+++..+
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 181 GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred cccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 45555 567788999999999999998888889888876544
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=88.52 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=132.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+|||||.|.|..++++.+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++|+
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 589999999999999999999985 55555553222222 2222 24444455777777 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCccccCC---CHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~i~~gg---~~~~~~~ 158 (474)
+. .+..++.++.+.+..+++|+.+.-+.... .+.+.+. ...+++. +|- .|....+|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rviRvmpN--tp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRVIRVMPN--TPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHH--HHHHhcC-CCCceEEecCC--ChhhhhcCcEEEeeCCCcchhhHHH
Confidence 85 88999988888788899999988776433 3333333 2233443 232 233445666544333 4566688
Q ss_pred HHHHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011931 159 IEDILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~-~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
++.+|...|.....+|+|+.. .|-.|+|.+ +.+..+..+++. +-+.| ++++...++-
T Consensus 145 ~~~ll~~vG~~~evpE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmG-lPr~lA~~la 202 (267)
T KOG3124|consen 145 VEELLSAVGLCEEVPEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMG-LPRQLAYRLA 202 (267)
T ss_pred HHHHHHhcCcceeCcHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccC-CCHHHHHHHH
Confidence 999999999877778888864 455899884 555566666666 66778 9988877764
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.2e-08 Score=96.46 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=85.7
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+..... +.++..+.++++++.+ +|+|+.+++
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~~~av~~---aDIVi~aT~ 198 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-GFDAEVVTDLEAAVRQ---ADIISCATL 198 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEeCCHHHHHhc---CCEEEEeeC
Confidence 345689999999999999986554 4478999999999999988764321 0125567888888887 999988888
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... .++.. +.+++|. +|++.+..+...+++...+.+++..|+|.
T Consensus 199 s~~---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 199 STE---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCC---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 753 33321 4567888 56666666667777766666666678774
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-07 Score=92.77 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=91.9
Q ss_pred CcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHH-HHHHHHhhhh----cCC--CCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSK-VDETVERAKK----EGD--LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~~~~~----~~~--~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++|||||+|.+|+.+|+.+. ..|.+|.+||+++.. ...+...... .+. .+.....+++++++. ||+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 779999999998642 2211111000 000 001223588999888 999999
Q ss_pred ecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
++|-....+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.....-|+-
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 999888888888 567788999999999999988888888888876544433334443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=91.32 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=62.6
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|+|||.| .||.+||.+|.++|+.|++|++.. .++++++++ +|+||+|++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 479999996 999999999999999999998652 256777777 9999999998866
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66543 78999999998754
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-07 Score=81.59 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=76.4
Q ss_pred EEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC----c---cccCCHHHHHhhcCCCcEEEEecC
Q 011931 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP----L---FGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~----~---~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+....... + ....+..+.... +|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGP---YDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHST---ESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCC---CcEEEEEec
Confidence 7899999999999999999999999999998 7777665542100000 0 011112123333 899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAM 122 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l 122 (474)
.. +++++++.+.+.+.+++.|+..-|+.. ..+.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g-~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMG-NEEVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSS-HHHHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCC-cHHHHHHHc
Confidence 86 789999999999999989998888863 333444433
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=73.12 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=80.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+||||||+|.+|......+.+. +++|. ++|+++++.+.+.+.. ++..++|.+++.+. ++.|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 4899999999999999888877 45654 8899999998886654 35688999999984 2489999999997
Q ss_pred hhHHHHHHHHHhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+-+. .++ ..| .++++- -...+.+.+++.+..+++|..+
T Consensus 74 ~h~~~~~-~~l---~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAK-KAL---EAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHH-HHH---HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHH-HHH---HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 5544333 333 233 455652 1224567777777777777643
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.3e-07 Score=88.34 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=89.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||+|+|.+|+.+|++|...|..+..++|++...+...+.+. -..+.+++..+ +|+|++++|..+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~--------~~~d~~~~~~~---sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA--------EFVDIEELLAN---SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc--------cccCHHHHHhh---CCEEEEecCCCHH
Confidence 357999999999999999999999556666787776666554432 14588888888 9999999999999
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (474)
...++ .++...+++|.+||+++-+...+.+.+.+.+++
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 99988 578889999999999999998888888888865
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.3e-07 Score=87.63 Aligned_cols=111 Identities=17% Similarity=0.113 Sum_probs=79.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..+++|||+|.+|..++..|...|.+|+++||++++.+.....+. ......++.+.+.+ +|+||.++|.. .
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~-----~~~~~~~l~~~l~~---aDiVI~t~p~~-~ 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGL-----SPFHLSELAEEVGK---IDIIFNTIPAL-V 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-----eeecHHHHHHHhCC---CCEEEECCChh-h
Confidence 368999999999999999999999999999999887665544331 11122344555555 99999999864 1
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+-++....++++.+|||.++..-.+.. +..+++|+..+..
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pggtd~---~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGGTDF---EYAEKRGIKALLA 262 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCCcCe---eehhhCCeEEEEE
Confidence 224556678899999999987644322 3445678777654
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.43 E-value=9e-07 Score=86.70 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=81.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~- 85 (474)
.+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ ... ..+..+.. +..+|+||.|+|.+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCC
Confidence 357999999999999999999999999999999999888776532110 111 22333322 224899999999752
Q ss_pred -hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 -PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 -~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.++.+.- -...+.++.+++|++..++.+ .+.+..+++|..+++
T Consensus 192 ~~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 192 GNIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1211100 023467899999999887655 467777888887765
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-05 Score=73.38 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=77.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|||+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999997 99999999999999999861 12 89999999986 6
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccccCC---Ccccc--CCCHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYKYIE 160 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a~~G---~~i~~--gg~~~~~~~v~ 160 (474)
+.+++.++. .+|+|.++++.. +.+ ....|++. |+.| +..+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~----i~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWP----FKK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHH----HHH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776653 379999998742 211 24578885 7776 5544443 33333 33567778888
Q ss_pred HHHHHHhcc
Q 011931 161 DILLKVAAQ 169 (474)
Q Consensus 161 ~ll~~lg~~ 169 (474)
.+++ |.+
T Consensus 109 ~l~~--G~~ 115 (197)
T PRK06444 109 EMFR--GYH 115 (197)
T ss_pred HHHc--CCE
Confidence 8888 655
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=85.72 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=69.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..++|+|||+|.||..++..|...| .+|+++||++++..++.+.... .....++..+.+.. +|+||.|++.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCC
Confidence 3568999999999999999999866 6899999999998888765421 11122234455554 99999999987
Q ss_pred hhHHHHHHHHHhcc-cCCCEEEecCC
Q 011931 85 APVDETIKTLSAYM-EKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l-~~g~iiId~st 109 (474)
.. ...+..+.... .++.+|||.+.
T Consensus 250 ~~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 250 HY-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred ch-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 54 44444443322 35789999985
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.8e-06 Score=83.39 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=87.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|-|||+|.+|+..|..|+++| ++|++-||++++.+++...... ++.. ..+.+.+.+-|++.|+||.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 679999999999999999999999 8999999999999988765311 1111 123333333344489999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
|.... ..+++. .++.|.-++|+|...+.. .++....++.|+..+ ++++..|
T Consensus 77 p~~~~-~~i~ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPG 128 (389)
T COG1748 77 PPFVD-LTILKA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPG 128 (389)
T ss_pred Cchhh-HHHHHH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcc
Confidence 98743 344433 355789999999887664 667777777776544 4565544
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=75.87 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=66.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+..++.|||+|.||+.++..|.+.|.+ |+++||+.++++++.+..... ...+...++..+.... +|+||.|+|.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCC
Confidence 346899999999999999999999986 999999999999998765211 0012233445555555 99999999987
Q ss_pred hhHHHHHHHHHhcccCC-CEEEecCC
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~st 109 (474)
.. .+-.+..+...+. .+++|.+.
T Consensus 87 ~~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 87 MP--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ST--SSTHHHHTTTCHHCSEEEES-S
T ss_pred Cc--ccCHHHHHHHHhhhhceecccc
Confidence 44 1112222222211 49999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-06 Score=84.93 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=60.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEe-CChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 4799999 99999999999999999999995 553 34566666 999999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.++.++ +++|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998764
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=84.92 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....++||||+|.||...+..|.. ...+|.+|||++++.+++.++.... +..+..+.++++++++ +|+|++|+|
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~~eav~~---aDiVitaT~ 201 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDPREAVEG---CDILVTTTP 201 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCHHHHhcc---CCEEEEecC
Confidence 345689999999999997766654 3468999999999998887653321 1124567899999988 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
..+. ++. ...+++|..|...++..|.
T Consensus 202 s~~P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 202 SRKP---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred CCCc---Eec--HHHcCCCCEEEecCCCCcc
Confidence 8643 221 2346899999888887653
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.5e-06 Score=82.72 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcC---C--CCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEG---D--LPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~---~--~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+.......... . .+++.+.+.++ ++. ||+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 5799999999999999999999876 99999999876544322110000 0 02333445544 344 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+..+. .+++++..+.+.. +..++|..||..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 74221 2344445566655 556777777644
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=79.27 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=83.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+..+++|||+|.+|...+..++.- . -+|.+|||++++.+++.++.....+..+..+.++++++.. +|+|+.+++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCC
Confidence 345799999999999998888754 2 3799999999999998876532111136678899999998 9999999997
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.+. +++ ...+++|..|.-.++..|...+--.+.+......|+|.
T Consensus 193 ~~P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 193 DTP---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred CCc---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 643 331 23577898888888877643322223333333456664
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.9e-06 Score=80.04 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=61.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|+|||. |.||.+||..|.++|+.|++|... +.++++.+++ +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 47999999 999999999999999999999311 2367777777 9999999999876
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.. .+++|.+|||+|...
T Consensus 215 v~~~------~ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKE------FVKEGAVVIDVGMNR 233 (284)
T ss_pred CCHH------HccCCcEEEEeccee
Confidence 6554 378999999998764
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=77.96 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=69.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|+|||.|+-|.+-|+||.++|.+|++--|.... .+...+.+ +. ..+.+|+++. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 47999999999999999999999999988776555 33333322 33 5689999998 99999999986 5
Q ss_pred HHHHHH-HHHhcccCCCEEEe
Q 011931 87 VDETIK-TLSAYMEKGDCIID 106 (474)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId 106 (474)
-.++++ ++.|.|++|+.+.-
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEe
Confidence 566664 89999999986643
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=79.52 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=81.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|.+|...+..++. .+ .+|.+|||++++.+++.+......+..+..+.+.++++.. +|+|+.|+|.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCC
Confidence 34579999999999998887754 34 3789999999999988765422101123457788888887 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... ++. ..+++|..|+..++..|...+.-...+......|+|.
T Consensus 203 ~~p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 203 KTP---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred CCc---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 743 333 4578999999998877644332223333333345654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=78.39 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.++....+ ..+. +.+.++++.+ +|+|+.|+|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~ 197 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATT 197 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccC
Confidence 344689999999999999999975 45 479999999999999887653210 0122 5678888887 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.... ++.. .+++|..|+..++..|..-+--.+.+... -.|+|.
T Consensus 198 s~~P---l~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 198 SRTP---VYPE---AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred CCCc---eeCc---cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 8753 3332 36899999999887764332222233322 346665
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=78.61 Aligned_cols=118 Identities=12% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+++|||+|.++...++.+..- --+|.+|||++++.+++.+..... +..+..+++.++++.. +|+|+.+++
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIV~taT~ 201 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDAAEVAHA---ANLIVTTTP 201 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCHHHHhcC---CCEEEEecC
Confidence 3456799999999999998887753 248999999999999888654322 1245667899999988 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHH-HHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE-KAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~~g~~~v~~ 132 (474)
.... +++ ...+++|..|+..++..|.. +++. +.+......++|.
T Consensus 202 s~~P---~~~--~~~l~~G~hi~~iGs~~p~~-~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 202 SREP---LLQ--AEDIQPGTHITAVGADSPGK-QELDAELVARADKILVDS 246 (315)
T ss_pred CCCc---eeC--HHHcCCCcEEEecCCCCccc-ccCCHHHHhhCCEEEECC
Confidence 7643 332 13578999999888877643 3333 3333333345664
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.1e-05 Score=78.41 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=66.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+... +...... ..+++.+.+.++ ++. +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 8999999766433111 1111000 013555667776 444 99999999
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.+. .++++.+++.+.. ++.+||..||-.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 8532 2333445566654 667888888854
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-05 Score=70.67 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=74.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||+||+|.+|..+...+.+. .+ .|.+|||+.++..++.+... ...+++++|++.. +|+++.|-..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 5799999999999999877643 24 46799999999988876542 3455889999876 9999999876
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+++++...+++.. ..+-+|++.+....+...++...+.+.+-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~ 112 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGG 112 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCC
Confidence 4666665554432 12345556555554444444444444443
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-05 Score=73.20 Aligned_cols=99 Identities=16% Similarity=0.289 Sum_probs=69.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
|+|.|||+|.+|..+|+.|.+.||+|++.|++++++++.... .... -+....+..++..+ +..+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 689999999999999999999999999999999998885541 1100 12233344444433 45699999999886
Q ss_pred hhHHHHHHHHHhc-ccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAY-MEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~-l~~g~iiId~st~ 110 (474)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 566666655533 4455566555543
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=68.35 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=62.5
Q ss_pred cEEEEc-ccHhHHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEK-GFPISVY-NRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
||+||| .|.+|..++..|.+. ++++..+ +++.++.+.+........ ... ...+..++. ..++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFE--ELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChh--hcCCCEEEEcCCcH
Confidence 689999 599999999999884 7887755 766544433333321100 010 011112222 01399999999997
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
....++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 45555555566678999999999875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=67.50 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred CcEEEEcc-cHhHHHHHHHHHH-CCCcEE-EEeCChH-HH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTS-KV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~-~~----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|||+|+|+ |.||+.++..+.+ .++++. ++|++++ .. .++.... ..++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----~~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----PLGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----T-SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----CcccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 688865 7788872 11 1111111 1146677899999888 999998
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
...+ ..+.+.++... +.|.-+|..+|+......+..+.+.++ +..+-+|
T Consensus 74 fT~p-~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp ES-H-HHHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred cCCh-HHhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 8843 45555555444 347888888888754443444444333 4444333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=69.89 Aligned_cols=90 Identities=11% Similarity=0.124 Sum_probs=62.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
++.|+|.|..|+.+|+.|...|-+|++++++|-+.-+....+ +.. .+.++++.. +|+||.++.....+.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVIT 93 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB-
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCccccC
Confidence 699999999999999999999999999999997766655443 333 468888877 999999887653221
Q ss_pred HHHHHHHhcccCCCEEEecCCCCc
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
.+..+.+++|.++.+.+....
T Consensus 94 ---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 94 ---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ---HHHHHHS-TTEEEEESSSSTT
T ss_pred ---HHHHHHhcCCeEEeccCcCce
Confidence 344556889999999887643
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-05 Score=75.58 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=74.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--C-----CcEEEEeCChH------HHHHHHHhhhhc-----C---CCCccccCCHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--G-----FPISVYNRTTS------KVDETVERAKKE-----G---DLPLFGFRDPES 66 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~l~~~~~~~-----~---~~~~~~~~s~~e 66 (474)
.||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+........ + ..++.+.+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 5799999999999999998764 2 26777754432 333333221110 0 015677888999
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
++.. +|++|..+|. +.+..++++|..+++++...|+++.+..
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 9887 9999999998 5899999999999999999999887653
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=82.93 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=66.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
...+|+|||+|.||..++..|...|. +|+++||++++.+.+.+..... ...+....+..+++.. +|+||.|++.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~~~~dl~~al~~---aDVVIsAT~s~ 340 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYKPLDEMLACAAE---ADVVFTSTSSE 340 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEeecHhhHHHHHhc---CCEEEEccCCC
Confidence 35689999999999999999999997 7999999999998887653210 0011223445555665 99999999776
Q ss_pred hh--HHHHHHHHHhcc---cCCCEEEecCC
Q 011931 85 AP--VDETIKTLSAYM---EKGDCIIDGGN 109 (474)
Q Consensus 85 ~~--v~~vl~~l~~~l---~~g~iiId~st 109 (474)
.. ..+.++.+.+.- ....+|||.+-
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 43 223333332211 11247777764
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=82.85 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=67.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++|+|||+|..|.+.|.+|...|++|++--|. .+..+.+.+.+ +.. .+++|+++. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~v-~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Ccc-CCHHHHHHh---CCEEEEcC
Confidence 57999999999999999999999999944433 33333333322 433 578999888 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEe
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIID 106 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId 106 (474)
|+. .-..+.+++.+.|++|.++.-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEe
Confidence 997 455666899999999988754
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.3e-05 Score=75.94 Aligned_cols=87 Identities=17% Similarity=0.397 Sum_probs=61.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+.||+|||+|+||..++..+.++ ++++. +||+++ ++.. +.. ++....+.+++... +|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~~---iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLDD---VDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhccC---CCEEEEcCCC
Confidence 47999999999999999999866 78877 679985 4332 111 13334455555544 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
....+. ..+.|..|.-+|+...
T Consensus 71 ~th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCHHH----HHHHHHcCCCEEECCC
Confidence 765443 3455667888888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.7e-05 Score=82.33 Aligned_cols=106 Identities=14% Similarity=0.218 Sum_probs=75.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++++|+|+|.+|.+++..|++.|++|+++||++++.+.+.+.... . ..+..++ ..+..+|+||.|+|.+..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~ 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCc
Confidence 3579999999999999999999999999999999988877654311 1 1122222 113449999999998854
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+... +. .+++|+...++.+. +.+.++++|...++
T Consensus 404 ~~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 404 IPKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred chhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 3321 21 38999998776544 55666777776553
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3e-05 Score=80.59 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=70.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|||.|.+|+.+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++...
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt~--- 320 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGNK--- 320 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCcc---
Confidence 4799999999999999999999999999999987764433322 22 3467888877 99999997543
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~ 111 (474)
.++ .+....+++|.++++.+...
T Consensus 321 -~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 321 -DIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred -cccCHHHHhccCCCcEEEEcCCCc
Confidence 344 35667789999999998874
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.3e-05 Score=76.80 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=74.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +.. .+.+++++. +|+||.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~v-~~leeal~~---aDVVItaTG~~--- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKI---GDIFITATGNK--- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CEe-CCHHHHHhc---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998765544332 222 356777766 99999887653
Q ss_pred HHHHH-HHHhcccCCCEEEecCCCCc-hhHHHHHHHH
Q 011931 88 DETIK-TLSAYMEKGDCIIDGGNEWY-ENTERREKAM 122 (474)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~-~~~~~~~~~l 122 (474)
.++. +....+++|.++++.+.... .+...+.+.+
T Consensus 262 -~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 262 -DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred -HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 3443 46678899999999988754 3444554443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6e-05 Score=75.23 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=86.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
....++|||+|.++...+..+..- .-+|.+|+|+++..+++.......+...+..+.+.+++++. +|+|+.|+|+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s 205 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPS 205 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCC
Confidence 345799999999999998888754 34899999999999998865443221125688899999998 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.+ .++. ...+++|..|.-.++-.|...+--.+.+...+..|+|.+
T Consensus 206 ~~---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 206 TE---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred CC---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 75 3332 245789999988887665443333334444446677764
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=76.73 Aligned_cols=99 Identities=10% Similarity=0.232 Sum_probs=72.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE-KGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|.+|...+..|+. .+. +|++|||++++.+++.+......+..+..++++++++.. +|+|+.|+|.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s 204 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPS 204 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCC
Confidence 34579999999999999999973 564 699999999999998875422101124456788888877 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
... ++. ...+++|..|...+.-.|
T Consensus 205 ~~p---~i~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 205 ETP---ILH--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred CCc---Eec--HHHcCCCcEEEeeCCCCC
Confidence 643 332 124678998887776544
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=6e-05 Score=76.05 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=71.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..++|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+......+..+..+.++++++.+ +|+|+.++|.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s 207 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPS 207 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCC
Confidence 34689999999999998888875 44 5799999999999998875432101123456788888887 9999999988
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
... ++.. ..+++|..|...++..|
T Consensus 208 ~~p---~i~~--~~l~~g~~v~~vg~d~~ 231 (330)
T PRK08291 208 EEP---ILKA--EWLHPGLHVTAMGSDAE 231 (330)
T ss_pred CCc---EecH--HHcCCCceEEeeCCCCC
Confidence 643 3321 23667887777665443
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.3e-05 Score=79.54 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=64.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......+..+++.. +|+||.|++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCC
Confidence 357999999999999999999999 7899999999988777764321 11122345555555 999999998764
Q ss_pred hHHHHHHHHHhccc---CCCEEEecC
Q 011931 86 PVDETIKTLSAYME---KGDCIIDGG 108 (474)
Q Consensus 86 ~v~~vl~~l~~~l~---~g~iiId~s 108 (474)
.+-. -+.+.+.+. ...+++|.+
T Consensus 253 ~ii~-~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 253 PIVS-KEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred ceEc-HHHHHHHHhcCCCCeEEEEeC
Confidence 4310 012222221 234788886
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=82.59 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=83.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-Cc-------------EEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FP-------------ISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l 71 (474)
+.+|+|||+|.||...+..|++.. ++ |++.|+++++++++.+..... .-+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 568999999999999999998753 33 899999999888877643110 00223 45777777655
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+.+|+||+|+|..-. ..++. ..++.|.-+++.+. ....+.++.+..++.|+.++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VAk---aAieaGkHvv~eky-~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAK---ACIELKKHLVTASY-VSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHH---HHHHcCCCEEECcC-CHHHHHHHHHHHHHcCCEEEE
Confidence 669999999998643 33333 33456777888873 345666777777777876553
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=77.77 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=68.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG- 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~~- 84 (474)
..+|.|||+|.+|...+..+...|.+|+++|+++++.+++...... .+. ...+.+++.+.++.+|+||.+++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g 242 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPG 242 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCC
Confidence 3569999999999999999999999999999999988777654321 011 1223344444444599999998431
Q ss_pred hhHHHHH-HHHHhcccCCCEEEecCCC
Q 011931 85 APVDETI-KTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl-~~l~~~l~~g~iiId~st~ 110 (474)
.....++ .+....++++.+|||.+..
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 1111122 4555667899999998753
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=7e-05 Score=75.40 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=79.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+|||||+|.+|...+..|... +. .|.+|||++++.+++.+......+..+..+++.+++++ +|+|++|+|.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps 203 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPS 203 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCC
Confidence 446899999999999999998743 33 68899999999998887542210112445778888874 8999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... +++ ...+++|..|...++..|.. +++...+-.+.-.|+|.
T Consensus 204 ~~P---~~~--~~~l~~g~hV~~iGs~~p~~-~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 204 RKP---VVK--AEWIKEGTHINAIGADAPGK-QELDPEILLRAKVVVDD 246 (326)
T ss_pred CCc---Eec--HHHcCCCCEEEecCCCCCcc-ccCCHHHHhCCcEEECC
Confidence 643 332 13468999998888876643 33332222233346664
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=73.51 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=77.5
Q ss_pred CcCcEEEEcccHhH-HHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEe
Q 011931 6 QLTRIGLAGLAVMG-QNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIGlG~mG-~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+++||||||+|.++ ...+..+.+.+. -|.++|+++++++++.+... + ..+++++++++. +..|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 46799999999555 568888887763 35688999999998887653 3 478899999886 336999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCe
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLL 128 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~ 128 (474)
+|+....+-++. .|..|+-|+--= +....+.+++.+..++.|..
T Consensus 75 tp~~~H~e~~~~----AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 75 TPNALHAELALA----ALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred CCChhhHHHHHH----HHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999876665543 345566554411 12235566666666665543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.2e-05 Score=72.30 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=63.0
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+|||+|||+ |.||+.++..+.+. ++++. ++|+++++.... .. .++..+++++++.+. +|+|+.++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCH
Confidence 479999998 99999999888764 67766 689988765443 11 135567788888765 9999988876
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ...+++.. .++.|.-++..+|+.
T Consensus 71 ~-~~~~~~~~---al~~G~~vvigttG~ 94 (257)
T PRK00048 71 E-ATLENLEF---ALEHGKPLVIGTTGF 94 (257)
T ss_pred H-HHHHHHHH---HHHcCCCEEEECCCC
Confidence 5 44444433 344566565555553
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=71.88 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+||||||+|.||+.++..+.+. +.++. ++++.. ++....... ++..+++++++. .++|+|+.|.|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l~---~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDALP---QRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHhc---cCCCEEEECCC
Confidence 57999999999999999999876 45554 445432 222221111 245677888872 24899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecCCCCCc
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMGVSGGE 138 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~v~~pvsgg~ 138 (474)
+. ...+.... .|..|.-++..+.. .+....++.+..++.|.. ++..+..|+-
T Consensus 71 ~~-~~~e~~~~---aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~ 126 (265)
T PRK13303 71 HA-ALKEHVVP---ILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGI 126 (265)
T ss_pred HH-HHHHHHHH---HHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCH
Confidence 86 44444433 34566666655554 222334555666666754 4445544553
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=4e-05 Score=79.97 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=65.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
...+|+|||+|.||..++..|...|. +|+++||++++...+.+.... ......+..+.+.. +|+||.|++.+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVI~aT~s~ 253 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALAE---ADIVISSTGAP 253 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhcc---CCEEEECCCCC
Confidence 34689999999999999999999997 799999999998877765321 11222334444444 99999999876
Q ss_pred hhHHHHHHHHHhcc----cCCCEEEecCC
Q 011931 85 APVDETIKTLSAYM----EKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l----~~g~iiId~st 109 (474)
..+-. .+.+.+.+ ..+.++||.+.
T Consensus 254 ~~~i~-~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 254 HPIIG-KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CcEEc-HHHHHHHHhhccCCCeEEEEeCC
Confidence 54311 11222222 24568888874
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00017 Score=70.48 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=68.6
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHH-CCCcEE-EEeCC-hHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRT-TSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|+||+|+| +|.||+.+++.+.+ .++++. ++||+ +++.. .+.+..... ..++..+++++++... +|+||.++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~~---~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVETD---PDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcCC---CCEEEECC
Confidence 46999999 69999999999986 477766 67854 33211 111110000 0124566788887433 89999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEEec
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~v~~ 132 (474)
|+. ...+.+.. .+..|.-+|..++.. +....++.+..++.|+.++-+
T Consensus 77 ~p~-~~~~~~~~---al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a 124 (266)
T TIGR00036 77 TPE-GVLNHLKF---ALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIA 124 (266)
T ss_pred ChH-HHHHHHHH---HHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEE
Confidence 875 44444433 344565555545443 333444444444445544433
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=76.16 Aligned_cols=98 Identities=10% Similarity=0.014 Sum_probs=72.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|+.+|..+...|.+|+++++++.+.......+ +.. .+.++++.. +|+||.+..+...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~~v- 322 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNKDI- 322 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCccc-
Confidence 4799999999999999999999999999999987755444333 222 367787777 9999987655321
Q ss_pred HHHHHHHHhcccCCCEEEecCCC-CchhHHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE-WYENTERRE 119 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~ 119 (474)
+-.+.+..+++|.++++.+.. ...+...+.
T Consensus 323 --I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 323 --IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred --hHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 125566789999999999884 333444443
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.6e-05 Score=74.62 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=74.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|..+...++.+..- -.+|.+|||++++.+++.+..... +.++..++++++++.. +|+|+.+++.
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S 203 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTAD 203 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCC
Confidence 445799999999998887766643 248999999999999888765421 1245667899999998 9999999976
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
.. -..+++. +.+++|..|.-.++-.|.
T Consensus 204 ~~-~~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 204 KT-NATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred CC-CCceecH--HHcCCCcEEEecCCCCCC
Confidence 42 1123321 357899988888776653
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=75.68 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=70.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+..+....+ +. ..+.+++++. +|+||.++...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~~--- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGNK--- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998765544332 22 2357777776 99999987553
Q ss_pred HHHHH-HHHhcccCCCEEEecCCCCc
Q 011931 88 DETIK-TLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~ 112 (474)
.+++ .....+++|.++++.+....
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 2443 56677899999999887653
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=72.40 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=61.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.||..+|..++..|+ +|.++|+++++..... ......+ ..++..+.+.++ ++. ||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~~---aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IAG---SDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hCC---CCEEEECC
Confidence 589999999999999999999996 9999999988542111 1100000 013444456654 344 99999977
Q ss_pred CCC----h----------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAG----A----------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-.+ . .+.++...+.+.. +..++|..||..
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 321 1 1223334455544 455777777754
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=70.28 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=75.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999998876542110 111222223332333449999999998753
Q ss_pred HHHH-HHHHH-----hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 87 VDET-IKTLS-----AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 87 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.+.. +.... ..+.++.+++|.--.+.. | .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP-T-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCCCC-C-HHHHHHHHCCCEEE
Confidence 3211 11100 123467889998754433 2 34444556666544
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.2e-05 Score=73.77 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=77.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|++++..|+..|. +|+++||+.++.+.+.+...... ...+....+..+.... +|+||.|+|.+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~---aDiVInaTp~G 203 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAA---ADGLVHATPTG 203 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCC---CCEEEECCcCC
Confidence 3579999999999999999999998 79999999999998876532100 0011112233333444 99999999876
Q ss_pred hhHH-H-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 85 APVD-E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 85 ~~v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-.-. . -+. ...+.++.+++|..-.+.. | .+.+..+++|...++
T Consensus 204 m~~~~~~~~~--~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 204 MAKHPGLPLP--AELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCCC--HHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEec
Confidence 2100 0 011 1236778899998876543 3 455555667765543
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.2e-05 Score=75.32 Aligned_cols=101 Identities=16% Similarity=0.268 Sum_probs=66.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+++|||+|..|...+..+... + -+|.+|+|++++.+++.+..... +..+..+.++++++.. +|+|+.|+|.
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s 202 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPS 202 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCC
Confidence 345799999999999998887653 3 38999999999999998776531 2346778899999998 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
.... .++. ...+++|..|+..++..|.
T Consensus 203 ~~~~-P~~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 203 TTPA-PVFD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp SSEE-ESB---GGGS-TT-EEEE-S-SSTT
T ss_pred CCCC-cccc--HHHcCCCcEEEEecCCCCc
Confidence 7510 2222 2467899999998887664
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00025 Score=59.85 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=67.5
Q ss_pred EEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCChhH
Q 011931 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~~v 87 (474)
|-|+|.|.+|..++..|.+.+.+|++.|+++++.+.+.+.+... +....+..+..+ .+++++.|+++++++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999988766321 122222223322 245699999999876332
Q ss_pred HHHHHHHHhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 88 DETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 88 ~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
-.++..+ ..+.+ ..+++-..+. ...+.++..|+..+
T Consensus 77 ~~~~~~~-r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLA-RELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHH-HHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHH-HHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 2333333 33334 4455444332 23444555666544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=73.19 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred EEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~~-~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+... ....... ..+++.+.+.++ ++. ||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999998877 9999999987543221 1110000 003344445544 344 9999998843
Q ss_pred Ch---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+++++.++.+.. +..++|..||..
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334445566554 566777777644
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.8e-05 Score=76.97 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=54.3
Q ss_pred CcEEEEcccHhHHHHHH--HH----HHCCCcEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLAL--NI----AEKGFPISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dv 76 (474)
+||+|||+|.||.+++. .+ ..+|++|.+||+++++++........ .+ ..++..+++++++++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 48999999999998666 34 45578999999999887765432210 00 1145567788888877 999
Q ss_pred EEEecCCC
Q 011931 77 IIMLVKAG 84 (474)
Q Consensus 77 Iil~vp~~ 84 (474)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999854
|
linked to 3D####ucture |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.4e-05 Score=73.13 Aligned_cols=117 Identities=16% Similarity=0.061 Sum_probs=76.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+...... .+....+..+.+. .+|+||.++|.+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCC
Confidence 357999999999999999999999 699999999999988876542110 0111112223333 4999999999763
Q ss_pred hHHHHHHH-HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 86 PVDETIKT-LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 86 ~v~~vl~~-l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.-..-... ....++++.+|+|..-.+ ..| .+.+..+++|...+
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcCeec
Confidence 21000000 113467789999997744 333 44455566776554
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=67.07 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=68.0
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+++.|+|. |.+|..++..|++.|++|++++|++++.+.+.+......+..+.. ..+.+++.+.+.++|+||.++|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 368999995 999999999999999999999999998888766432100001111 23344333334449999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
+.. ..........++.+++|..-..+
T Consensus 108 g~~---~~~~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 108 GVE---LLEKLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred Cce---echhhhcccCceeEEEEccCCCC
Confidence 753 11112223445788999876553
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=73.07 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=49.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCC--Ccc-ccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDL--PLF-GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~--~~~-~~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+...........+ ... .+.+.++ ++. +|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~---aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG---ADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC---CCEEEEccC
Confidence 58999999999999999999999 58999999988765322211110000 011 1234433 344 999999998
Q ss_pred CC
Q 011931 83 AG 84 (474)
Q Consensus 83 ~~ 84 (474)
.+
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 64
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00037 Score=70.31 Aligned_cols=110 Identities=13% Similarity=0.197 Sum_probs=78.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..||||||+ .||...+..+.+. ++++. ++|+++++.+++.++. ++..+++.+|+.+. .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 468999999 6899999998875 46665 7899999999988765 35578899999876 8888888764
Q ss_pred ----ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 84 ----GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ----~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+ +. ...++.|.-|+---.....+.+++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e-~a---~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSA-LA---RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHH-HH---HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22333 22 233556765555434445677777777777777654
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=63.84 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......+.. ..+........+.++. +|+||++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~---aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD---ADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT---ESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc---ccEEEEec
Confidence 69999999 9999999999998875 79999999887665443221100 0012222233333444 99999987
Q ss_pred CCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+ .. ++++...+.+.- +..+++-.||-
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 432 11 223334444444 66677777664
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=70.71 Aligned_cols=98 Identities=10% Similarity=0.169 Sum_probs=64.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC---CCCcc-ccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG---DLPLF-GFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~---~~~~~-~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.+|..+|..|+..| ++|.++|+++++++.+.....+.. ..+.. ...+.++ +.. +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 37999999999999999999999 689999999988776654331100 00111 1234444 344 99999999
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+. .++++...+.++ .+..+||..||-
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCh
Confidence 7641 123333445443 356677777763
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=71.01 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=64.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcC---C--CCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEG---D--LPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~---~--~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
.+||+|||+|.||..++..++..| .+|.++|+++++.+...-...... + .+++.++++++ .+. +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~-l~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYED-IKD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHH-hCC---CCEEEEC
Confidence 358999999999999999999988 689999999875432111000000 0 02333456663 355 9999999
Q ss_pred c--CCC-------------hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 V--KAG-------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. |.. ..+.++...+.+.. |..++|..||..
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 9 321 12334445555553 667777777754
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=66.29 Aligned_cols=191 Identities=12% Similarity=0.132 Sum_probs=114.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+.+||||.|..|.....+-...++... +-.|++++...+.+.. ...+.++.+.-+..+++|.-+|+.
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~ 78 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA 78 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH
Confidence 34689999999999996666555566555 4478888877765532 223334433322267788888764
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe---EEe-cCCCCCccccc--CCCccc-cCCCHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL---YLG-MGVSGGEEGAR--HGPSLM-PGGSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~---~v~-~pvsgg~~~a~--~G~~i~-~gg~~~~~~ 157 (474)
.+..+... ..-.||+++++||.-... .+.+.+...|.. +.. +..+|.++... .++.+. ..+|+--+.
T Consensus 79 -~~s~vaa~--~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~a 152 (289)
T COG5495 79 -LYSGVAAT--SLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYA 152 (289)
T ss_pred -HHHHHHHh--cccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccH
Confidence 22222211 224589999999986533 344444444432 222 23455555443 333332 256777778
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 158 YIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 158 ~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
.++++...||.+. +.+-+ +.--......|.-......++.++..+.+..| .|.-+
T Consensus 153 i~q~la~emgg~~-------f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 153 IVQSLALEMGGEP-------FCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHHhCCCc-------eeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 8899999999763 33322 33333344444444556788899999999998 87443
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=67.54 Aligned_cols=118 Identities=13% Similarity=0.147 Sum_probs=75.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~v 81 (474)
.+||||||+|.||+.++..|.+.+ +++ .+++|++++.+++... ...++++++++ .. +|+|+.|-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~~---~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAWR---PDLVVEAA 70 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhcC---CCEEEECC
Confidence 468999999999999999987542 544 4789988887777542 35778899974 54 99999998
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchh--HH-HHHHHHHHcC-CeEEecCCCCCcc
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--TE-RREKAMAELG-LLYLGMGVSGGEE 139 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~-~~~~~l~~~g-~~~v~~pvsgg~~ 139 (474)
... .+++....++ ..|.-++-.|.+-..+ .. ++.+..++.| -.|+.++-.||-.
T Consensus 71 ~~~-av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 71 GQQ-AIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred CHH-HHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 764 6666655544 4454444444443332 22 2333333333 3456655555543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=61.31 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=73.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|.+||+| .|..+|..|++.|++|++.|.+++.++.+.+.+... .....+...-++-+. +|+|...=|++ +
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-e 89 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-D 89 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-H
Confidence 3689999999 999999999999999999999999888776654210 001123334456666 99999888886 6
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
+..-+-.++..+...-+|...|+..|
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 66666677777777667777777654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00043 Score=74.94 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=75.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
.+|-|+|+|.+|+.+++.|.++|++|++.|.|+++++++.+.+... +....+..+..+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~----i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRA----VLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeE----EEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 4689999999999999999999999999999999999887654211 222223344433 2557999999999875
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
....++..+... .+...++-..+. + +..+.+++.|+.++=.|
T Consensus 494 ~~~~iv~~~~~~-~~~~~iiar~~~-~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREK-RPDIEIIARAHY-D----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHH-CCCCeEEEEECC-H----HHHHHHHHcCCCEEECh
Confidence 444444444443 333334333321 1 23334455677666544
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=73.35 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +.. .+.++++.. +|+||.|+....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~~-- 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNKD-- 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCHH--
Confidence 4799999999999999999999999999999999877666543 222 245666665 999999886542
Q ss_pred HHHHH-HHHhcccCCCEEEecCCC
Q 011931 88 DETIK-TLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~ 110 (474)
++. .....+++|.++++.+..
T Consensus 270 --~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 270 --IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --HHHHHHHhcCCCCcEEEEeCCC
Confidence 343 446778999999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=62.88 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=59.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCC-Cc-EEEEeCChHHHHHHHHhhhhcCCC-CccccC-CHHHHHhhcCCCcEEEEecCC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKG-FP-ISVYNRTTSKVDETVERAKKEGDL-PLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G-~~-V~v~dr~~~~~~~l~~~~~~~~~~-~~~~~~-s~~e~~~~l~~~dvIil~vp~ 83 (474)
||+||| .|.+|+.+.+.|.++- ++ +.++.++.+.-..+.......... .+.... +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 9999999999999853 34 446677663333333321100000 122223 33334 54 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ...+....+ +++|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 455555544 56889999999875
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00036 Score=61.37 Aligned_cols=122 Identities=23% Similarity=0.333 Sum_probs=74.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|.|||+|.+|+.++.+|+..|+ +++++|.+.-....+..+.-. ....+-.-+....+.++.+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 799999874333322221100 00000111222333333332 4555555543311
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.... ...+.+-++||+++.. +.....+.+.+.+.++.|+++...|
T Consensus 80 ~~~~----~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDNL----DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhhH----HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 3345678999999887 4555567777788899999988776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.2e-05 Score=62.84 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=72.1
Q ss_pred cEEEEc----ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+|+||| .+.+|..+..+|.++|++|+..|...+.+. +...+.+++|.-.. .|++++++|+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------G~~~y~sl~e~p~~---iDlavv~~~~~ 66 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------GIKCYPSLAEIPEP---IDLAVVCVPPD 66 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------TEE-BSSGGGCSST----SEEEE-S-HH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------cEEeeccccCCCCC---CCEEEEEcCHH
Confidence 699999 799999999999999999999987753221 36678888884244 89999999985
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.+.++++++... ..+.+++..+ ...+++.+.+++.|+.+++..
T Consensus 67 -~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 67 -KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred -HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 788888887654 4566777666 344566677778899988643
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00057 Score=74.55 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
.++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++++.+.+... +....+..+..++ ++++|.++++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV----YYGDATQLELLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE----EEeeCCCHHHHHhcCCccCCEEEEEeCCH
Confidence 35799999999999999999999999999999999999887654311 2222333444432 55799999999987
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....++..+.. ..|...|+-.+.. +...+.+.+.|+..+
T Consensus 476 ~~n~~i~~~~r~-~~p~~~IiaRa~~-----~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 476 EDTMKIVELCQQ-HFPHLHILARARG-----RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHH-HCCCCeEEEEeCC-----HHHHHHHHhCCCCEE
Confidence 555455444444 3344344433332 133445555666554
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0007 Score=67.77 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC--CCcccc-CCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD--LPLFGF-RDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~--~~~~~~-~s~~e~~~~l~~~dvIil 79 (474)
+..+||+|||+|.+|..+|..|+..|. ++.++|++.++++.......+... .+.... .+.++ .+. ||+||+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIi 79 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVI 79 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEE
Confidence 334699999999999999999999987 899999998876554433221100 012222 33444 344 999999
Q ss_pred ecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.-.+. . ++++++.+..+- +..+++..||-
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 774421 1 223333344332 56677777763
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=71.53 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=57.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..++.|||+|.||.-.|++|.++| ..|++.||+.+++.+++++... .+.++.++...|..+|+||.++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 457999999999999999999999 5899999999999999886531 12345555555555999999987654
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=72.77 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=71.5
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcC-CC-CccccCCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEG-DL-PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~-~~-~~~~~~s~~e~~~~l~~~dvIil 79 (474)
....+++|||+|.++...+..++.-. -+|.+|||++++.+++.++..... +. .+..+++.++++.. +|+|+.
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvt 229 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTY 229 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEE
Confidence 34567999999999999998887632 389999999999998887653210 01 25678899999988 999999
Q ss_pred ecCCCh---hHHHHHHHHHhcccCCCEEEecCC
Q 011931 80 LVKAGA---PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 80 ~vp~~~---~v~~vl~~l~~~l~~g~iiId~st 109 (474)
|++... ....+++ ...+++|..|+..+.
T Consensus 230 aT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 230 CNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred ccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 997542 1112332 235678888865443
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00096 Score=67.74 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=70.8
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.+|.. .+..+... ++++. ++|+++++.. +... ....+++++++++. .+.|+|++|+|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 468999999999984 55666553 67776 7899987653 2111 24567899999864 347999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEEE-ecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 84 GAPVDETIKTLSAYMEKGDCII-DGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
....+.++. .++.|+.|+ +-- .....+.+++.+..++.|+.+
T Consensus 75 ~~H~~~~~~----al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKA----ALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHH----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 765554443 344565544 411 122345566666666666543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00085 Score=67.02 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=64.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~----~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+.+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+.. ...+..+.+++++ +. +|+||+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvi 77 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIV 77 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEE
Confidence 34699999999999999999998876 79999998876554433221110 0023434566664 44 999999
Q ss_pred ecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.-.+ .. ++++.+.+..+ .+..++|..||-
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 76432 11 22233444444 467778888764
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00074 Score=69.64 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=73.0
Q ss_pred EEEEcccHhHHHHHHHHHHCC-C-cEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGLAVMGQNLALNIAEKG-F-PISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|.|+|+|.+|+.++..|++.+ + +|++.||+.++++++.+..... ++.. ..+.+++.+-++++|+||.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999886 4 8999999999998887531100 1111 22344333334449999999987
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG 137 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg 137 (474)
. ....+++.. ++.|.-.||.+. ......++.+..++.|+.++. ++...|
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 5 445555443 446788999333 123444555666667776553 455444
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00052 Score=67.23 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+.+||+|+|.+|+.+|.++..-|..|..||.-... ++....+ +. ..+.+|+... +|+|-+-+|-..+.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~g-------vq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFG-------VQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhcc-------ce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999999854321 2222222 22 3478888887 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (474)
+.++ ++.+..+++|-.||+++.+...++..+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566777999999999999988888888877754
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00019 Score=74.33 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=56.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
...+|.|||+|.||..++..|++.|. +++++||++++.+.+.+..... .+...+++.+.+.. +|+||.|++.+
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~~---aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIKK---ADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhcc---CCEEEECcCCC
Confidence 34689999999999999999999996 7999999999998888754200 12223334444444 99999999887
Q ss_pred hh
Q 011931 85 AP 86 (474)
Q Consensus 85 ~~ 86 (474)
..
T Consensus 254 ~~ 255 (414)
T PRK13940 254 EY 255 (414)
T ss_pred Ce
Confidence 43
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00086 Score=73.38 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=76.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
.+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+... +....+..++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKV----FYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeE----EEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 5799999999999999999999999999999999999887654321 222333444443 3567999999998875
Q ss_pred hHHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
....++..+... .|. .+++-..+ .+....+.+.|+..+..+
T Consensus 477 ~n~~i~~~ar~~-~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e 518 (621)
T PRK03562 477 TSLQLVELVKEH-FPHLQIIARARD------VDHYIRLRQAGVEKPERE 518 (621)
T ss_pred HHHHHHHHHHHh-CCCCeEEEEECC------HHHHHHHHHCCCCEEehh
Confidence 544444444333 344 34443322 133445666777766433
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00038 Score=63.05 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=57.0
Q ss_pred cCcEEEEcccHh-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|||.|.| |..+|..|.+.|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCc
Confidence 357999999997 88899999999999999998742 22334455 999999999864
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.. +.++++.+|||.+...
T Consensus 100 ----ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ----LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ----eecH--HHccCCeEEEEccCCC
Confidence 2211 2356788999998753
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=64.01 Aligned_cols=121 Identities=12% Similarity=0.160 Sum_probs=85.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHH---HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIA---EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~---~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
....|+||+|+|.|++-.++.|. +.+|.|+ ++||+.+++.++++...-. +.+.+.+.+|+++. ..+|+|.+.
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvVyi~ 79 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVVYIS 79 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEEEeC
Confidence 34468999999999999999885 3467765 7799999999998865321 35788999999987 345999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecC-CCCchhHHHHHHHHHHcCCeEEec
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGG-NEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.|.++..+-+..-+. . ...++++.- .......+++.+..+.+|+.|.+.
T Consensus 80 ~~~~qH~evv~l~l~-~--~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 80 TPNPQHYEVVMLALN-K--GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred CCCccHHHHHHHHHH-c--CCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 999876554433222 1 223555521 223356777888888889877664
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00041 Score=67.66 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=65.1
Q ss_pred EEEEcc-cHhHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 10 IGLAGL-AVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~~----~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|+|||+ |.||..++..|+..| .+|.+||+++++++.......+.. ..+++.++++.+.+++ ||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999998 799999999877655443221100 0134555666666666 9999996
Q ss_pred cCCC---------------hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.-.+ ..++++.+.+.... +..++|..||-.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 6321 11333444555544 677788887643
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00035 Score=70.81 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=60.1
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+|+||+|||+ |.+|..+++.|.++ ++++. ++++. +..+.+.+............+.+.++. ..+++|+|++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCC
Confidence 3579999996 99999999999976 56765 45543 322222221110000000012233332 1234999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
++ ...++...+. +.|..|||.|+...-
T Consensus 78 ~~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HG-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cH-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 97 4444444433 468999999987643
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=64.69 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccc-cCCHHHHHhh--cCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFG-FRDPESFVNS--IQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~~~~~~~~-~~s~~e~~~~--l~~~dvIil~ 80 (474)
+.||||||+|.+|..++..+.+. +.++. ++|+++++.. +..++. ++.. +.+.+++++. +++.|+||.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888754 55665 7899886432 223222 2333 4678888863 3458999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+.. ....... .++.|..+||.+...
T Consensus 78 T~a~~-H~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGA-HVRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCHHH-HHHHHHH---HHHcCCeEEECCccc
Confidence 99863 3333333 345789999988754
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=69.18 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=63.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh-cCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS-IQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~-l~~~dvIil~vp~~~ 85 (474)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+..... -+.. ..+...+.+. ++++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 5899999999999999999999999999999999988876522100 0111 1122222222 45699999999886
Q ss_pred hHHHHHHHHHhcc-cCCCEEEec
Q 011931 86 PVDETIKTLSAYM-EKGDCIIDG 107 (474)
Q Consensus 86 ~v~~vl~~l~~~l-~~g~iiId~ 107 (474)
.....+......+ ....+|+..
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEE
Confidence 4444443333333 444555544
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=65.25 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=62.5
Q ss_pred EEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCC----CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGD----LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~----~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|||+|.+|.++|..|+..| .++.++|+++++++.......+... .++..+.+.+ .++. ||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~---aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD---ADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC---CCEEEEcCCC
Confidence 689999999999999999998 5899999999887765543221100 0122233433 3343 9999999875
Q ss_pred Ch----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. . ++++...+..+- +..+||..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1 223334444444 66778777763
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=66.13 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=73.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC----------CCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK----------GFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~----------G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~-~~~~~~s~ 64 (474)
..+|+|+|+|.||+.+++.|.++ +.+|. ++|++ .++...+.+.......+ ....+.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999998765 34544 66853 33333333321100000 00123477
Q ss_pred HHHHhhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 65 ESFVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
++++.. ..+|+|+.|+|+.... +...+-+...+..|..||..+..... ...++.+..++.|..|. .+.+.++
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 888754 2489999999974321 22223334556778888765432211 23455555566677654 3444433
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00066 Score=68.88 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhh-cCCCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKK-EGDLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~-~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|||+ |.+|..+++.|.++ ++++. +++++....+.+.+.... .+...... ..+.+++.+. +|+||+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 58999998 99999999999977 56777 556554322222221110 00000011 1144555544 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ ...++...+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 87 4444544443 4689999999875
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0041 Score=53.09 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=73.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH--HHhhCCCCCCCccC
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK--AYDRNADLANLLVD 389 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~--~~~~~~~l~~ll~~ 389 (474)
|+++-.|.++|-+.++.+...+|++.+-++. ++|.+++.++-+.| --.|+.++.... ++.++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4677899999999999999999999997753 49999999999876 457888776544 3333221
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 428 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~ 428 (474)
+.|. ++-...+++-+++.|-+.|+|+|..+.+.++|.
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2221 223456678899999999999999999998775
|
... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0035 Score=65.95 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=73.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-ccc-CCHHHHH-hhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGF-RDPESFV-NSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~-~s~~e~~-~~l~~~dvIil~vp~ 83 (474)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+++.+.+.. ..+ ... .+.+.+. ..++++|.||+++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 5789999999999999999999999999999999998888765321 011 111 2233221 224569999988887
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+ ...-.+..++..+....+|+-..+.. ....+...|+.++-
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~------~~~~~~~~g~~~vi 348 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPA------YVDLVEGLGIDIAI 348 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcc------hHHHHHhcCCCEEE
Confidence 5 33333333444455556666554432 12334555665553
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0029 Score=64.28 Aligned_cols=113 Identities=9% Similarity=0.165 Sum_probs=71.2
Q ss_pred cCcEEEEcccHhHHH-HHHHHHH--CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAE--KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+.||||||+|.++.. .+..+.. .+++|. ++|+++++. ++.+... .+..+++.+++++. .+.|+|++|+|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 468999999997753 3454533 356775 789997654 4443321 14567899999864 34799999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+-++.. ++.|+ ++++-- .....+.+++.+..+++|+.+.
T Consensus 74 ~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 74 ADSHFEYAKRA----LEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred chHHHHHHHHH----HHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 98665544433 33454 555521 1123566677777777776543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=65.67 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=56.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhc------------CCCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKE------------GDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~------------~~~~~~~~~s~~e~~~~l~ 72 (474)
|+||||+|+|.||+.+++.+.+. +++|. ++|++++....+.+..... ++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 57999999999999999988764 56776 5677766555544421000 00013333455555544
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||.|+|... ..+... .+++.|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 677777776642 222222 223345666665553
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0004 Score=63.01 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=64.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--------------------c---CC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--------------------F---RD 63 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--------------------~---~s 63 (474)
..+|.|+|.|+.|..-+..+...|++|+++|.++++.+++...... .+.. . ..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3689999999999999999999999999999999888776654321 1111 1 12
Q ss_pred HHHHHhhcCCCcEEEEecC-CChhHHHHH-HHHHhcccCCCEEEecCC
Q 011931 64 PESFVNSIQKPRVIIMLVK-AGAPVDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp-~~~~v~~vl-~~l~~~l~~g~iiId~st 109 (474)
+.+.+.. +|+||.++- ++.....++ ++-...++++.+|+|.|-
T Consensus 96 f~~~i~~---~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAP---ADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH----SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhh---CcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 3344454 899997442 222233333 556667889999999875
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=60.44 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=76.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQ 72 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~ 72 (474)
+.++|+|.|+|.+|+.++..|.+.|.+|+ +.|. +.+.+.+..+....-. +... .-+.+++...
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~--~~~~~~~~~~~~i~~~-- 105 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL--GFPGAERITNEELLEL-- 105 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc--cCCCceecCCccceee--
Confidence 34689999999999999999999999998 7787 6666655544321100 0100 1123333332
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+||+++-|.+...-..+.+.. ++ =.+|+..+|... +.+..+.|.++|+.|+.-
T Consensus 106 ~~Dvlip~a~~~~i~~~~~~~----l~-a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 106 DCDILIPAALENQITADNADR----IK-AKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred cccEEEecCccCccCHHHHhh----ce-eeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 489999998876433333333 32 467888888764 366778889999988764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=68.90 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=51.5
Q ss_pred cCcEEEEcccHhHHHHHH--HHH----HCCCcEEEEeCChHHHHHHHH---hhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLAL--NIA----EKGFPISVYNRTTSKVDETVE---RAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
|+||+|||+|.||...+. .++ -.|.+|+++|+++++++.... ..... + ..++..+++..++++. +|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---AD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---AD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CC
Confidence 479999999999976655 554 235689999999987663221 11100 0 1145667777777777 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||+++-.+
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999999775
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=62.85 Aligned_cols=93 Identities=10% Similarity=0.131 Sum_probs=64.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|||||+|.+|..++..+.+. +.++. ++|+++++.. ++.+.. ++. .+.+.+++++. ++.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 5899999999999998887754 56765 7899887533 233222 232 34578888764 347999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+.+ .. ...++.|..|+|.+...
T Consensus 75 ~~H~e-~a---~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHAR-HA---RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHH-HH---HHHHHcCCEEEECCccc
Confidence 74433 22 23356789999987654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=64.25 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=60.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTT--SKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
|||+|||+ |.+|..++..|+..|+ +|+++|+++ ++++.......+ .+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 68999997 9999999999999987 499999965 443222111000 00 002333344444 444 9999
Q ss_pred EEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCCCchhH
Q 011931 78 IMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNEWYENT 115 (474)
Q Consensus 78 il~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~ 115 (474)
|+++..+. . ++++...+.+.. +..+||..+|..+..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHH
Confidence 99996321 1 233334455544 4555666665443333
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.018 Score=55.11 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=98.9
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe---cC
Q 011931 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG---MG 133 (474)
Q Consensus 57 ~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~---~p 133 (474)
++..+++..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|+++.......+.+.++.+...+ +.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 57778888899988 9999999999976778899999999999999999999877666666666555444333 33
Q ss_pred CCCCcccccCCCccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 134 VSGGEEGARHGPSLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (474)
Q Consensus 134 vsgg~~~a~~G~~i~~gg--~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~ 211 (474)
|-|.+ |..+..-| ++++.+++.+|.++.+... +.+-..=.+...-|. ....+...+.+.+-+..+
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~a-------y~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~ 271 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNA-------FKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAV 271 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 33332 55333333 8899999999999988753 333222222222332 133344455556666666
Q ss_pred HHhCCCCHH
Q 011931 212 KSVGKLTNE 220 (474)
Q Consensus 212 ~~~G~l~~~ 220 (474)
.+.-|.+.+
T Consensus 272 tqIlgAP~~ 280 (342)
T PRK00961 272 TQILGAPAD 280 (342)
T ss_pred HHHhcCcHH
Confidence 665435544
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=66.29 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=69.8
Q ss_pred CcEEEEcccHhHHHH-HHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cC-C-C-----Ccccc--CCHHHHHhhcCC
Q 011931 8 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTSKVDETVERAKK----EG-D-L-----PLFGF--RDPESFVNSIQK 73 (474)
Q Consensus 8 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~~-~-~-----~~~~~--~s~~e~~~~l~~ 73 (474)
|||.++|+|+||++. ...|.+.|++|++.|++++.++.+.+++.- .+ . . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 689999999999854 888889999999999999999988876421 00 0 0 11111 123445444445
Q ss_pred CcEEEEecCCChhHHHHHHHHHhccc--------CCCEEEecCCCC
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYME--------KGDCIIDGGNEW 111 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~--------~g~iiId~st~~ 111 (474)
+|+|.++|+.. ..+.+...+.+.|. ++-+|+.|=|..
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~ 125 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh
Confidence 89999999865 55666655555442 233788888875
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=63.29 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=72.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEec--CC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLV--KA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~v--p~ 83 (474)
.-||.|||-|.+|.+-|+-..--|-+|++.|+|.+++..+-..... ++ +..++...+.+.+.++|+||-+| |.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 4589999999999999999888899999999999998877654321 22 23445555555555599999876 33
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.++=+-+.++....++||.+|||..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 2222334577788899999999965
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.002 Score=67.31 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=73.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--------C--CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--------G--FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--------G--~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~d 75 (474)
+.+|||||+|.+|+.++..|.++ | .+| .++|+++++...+. .. ....+++++++++. ...|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~~------~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-LP------GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-Cc------ccceeCCHHHHhhC-CCCC
Confidence 46899999999999999887654 3 344 47799977643211 00 23467788998864 2369
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC-CchhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-WYENTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
+|+.+++......+. +...|..|..|+..... ......++.+..+++|+.+. .+.|.||
T Consensus 75 vVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999998764333333 33456678878754321 11223444555566677543 4444444
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0037 Score=59.11 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=73.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh----------HHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT----------SKVDETVERAKKEGDLPLFG--FRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~ 73 (474)
.++|+|.|+|++|+.+|..|.+.|. .|.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 4689999999999999999999988 455789887 6555544433211 1111 112233332 2 4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
||+++-|.+.+.-.... .+.+ .=.+|+...|... +.+..+.|.++|+.|++-
T Consensus 98 ~DVlipaA~~~~i~~~~----a~~l-~a~~V~e~AN~p~--t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 98 VDIFAPCALGNVIDLEN----AKKL-KAKVVAEGANNPT--TDEALRILHERGIVVAPD 149 (217)
T ss_pred ccEEeeccccCccChhh----Hhhc-CccEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 99999998876322222 2233 2467888888653 236777888999888754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0032 Score=59.93 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=68.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCc---EEEEeCC----hHHH-------HHHHHhhhhcCCCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRT----TSKV-------DETVERAKKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
.++|-|+|+|.+|..+|..|.+.|.. |+++||+ .++. ..+.+.... .....++.+.+..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~~-- 97 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-----EKTGGTLKEALKG-- 97 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-----CcccCCHHHHHhc--
Confidence 35899999999999999999999975 9999999 4443 222222110 0111256566665
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+|+||-++|.+...+.+ ...+.++.+|.+.+|-.+ +...+...+.|..
T Consensus 98 -~dvlIgaT~~G~~~~~~----l~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 -ADVFIGVSRPGVVKKEM----IKKMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred -CCEEEeCCCCCCCCHHH----HHhhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 99999999855322233 334457788889885443 2344444445654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0049 Score=62.52 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=61.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~----~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+.. ...+....+.++ ++. ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 599999999999999999998876 79999999876654433221100 001222235555 344 99999986
Q ss_pred CCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
-.+ .. ++++...+..+ .+..++|..||-
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNP 156 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNP 156 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 432 11 12222344443 466778888764
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=59.02 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=31.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 39 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 39 (474)
..+|+|||+|.||+.+|..|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.02 Score=54.90 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=98.9
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 57 ~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
++..+++..|+++. +|++|+-+|-+.....+++.+++.+++|.+|.++.|+++.....+.+.+.++.+...++.. +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 57788888999988 9999999999976778899999999999999999999877666666666555554444321 2
Q ss_pred CcccccCCC-ccccC-CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011931 137 GEEGARHGP-SLMPG-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 137 g~~~a~~G~-~i~~g-g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~ 214 (474)
+.++.. |. .+.-| .++++.+++.+|.++.+... +.+...=.+...-|. ....+...+.+.+-+..+.+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~a-------y~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~I 272 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKA-------FKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKI 272 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCe-------eecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 223333 44 44333 38999999999999988753 333222222222222 123334455556666556665
Q ss_pred CCCCHH
Q 011931 215 GKLTNE 220 (474)
Q Consensus 215 G~l~~~ 220 (474)
-|.+.+
T Consensus 273 lgAP~~ 278 (340)
T TIGR01723 273 LGAPAD 278 (340)
T ss_pred hcCcHH
Confidence 435544
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=68.14 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc------------CCCCccccCCH------HHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE------------GDLPLFGFRDP------ESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~------------~~~~~~~~~s~------~e~~ 68 (474)
..++.|+|+|.+|...+..+...|..|+++|+++++.+.+...+... +++ .+..+.. +.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gY-a~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGY-AKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccc-eeecCHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999877666543210 000 0000000 0022
Q ss_pred hhcCCCcEEEEec-----CCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 69 NSIQKPRVIIMLV-----KAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 69 ~~l~~~dvIil~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.++++|+||.++ |.+. -+.++....+++|.+|||.+..
T Consensus 243 e~~~~~DIVI~TalipG~~aP~---Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPK---LITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCe---eehHHHHhhCCCCCEEEEeeeC
Confidence 3344588888887 3331 1224556678888888888764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=63.36 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=58.3
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|. +|.++|..|.+.|..|+++++... ++.+.+.+ +|+||.+++.+.-
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5799999988 999999999999999999986421 34455566 9999999988643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 221 3468899999998753
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0029 Score=61.99 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=78.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. ++.+|+||-++|.+-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999999987654211 0001111221111 1128999999998743
Q ss_pred HHH---HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDE---TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-.. .+. ...+.++.++.|.--.+..+ .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 321 122 34577899999987665433 344555667766554
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=63.20 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=59.2
Q ss_pred CcEEEEcccHh-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.+++ +|+||.+++.+.-
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 47999999888 999999999999999997632 2355666666 9999999997643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 322 5688999999998764
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0049 Score=64.09 Aligned_cols=130 Identities=16% Similarity=0.064 Sum_probs=77.7
Q ss_pred CCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-hhcCCCCccccC--CHHHHHhhcCCCcEEE
Q 011931 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KKEGDLPLFGFR--DPESFVNSIQKPRVII 78 (474)
Q Consensus 2 ~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~~~~~~~~~~~--s~~e~~~~l~~~dvIi 78 (474)
+..-.++||.|+|+|.-|.++++.|.+.|++|+++|.++.. ....... ... ++.... ...+.... +|+|+
T Consensus 2 ~~~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~~---~d~vV 74 (448)
T COG0771 2 MEDFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLAE---FDLVV 74 (448)
T ss_pred cccccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhcccc---CCEEE
Confidence 33344789999999999999999999999999999976654 1111110 000 111111 11133333 89988
Q ss_pred Eec--CCC-hhHHHHHH---------HHHhcc--cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 79 MLV--KAG-APVDETIK---------TLSAYM--EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 79 l~v--p~~-~~v~~vl~---------~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
..= |.. ..++.... ++.-.. ...-+-|..||+...+|.-+...++..|....-++-.|.|
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 753 222 22332221 223222 2335557788888777777788888888766655555543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=58.12 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=51.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|||+||| .|..|+.++.-..+.||+|+.+-||++++..+....... .. .-+++.+.+.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 7999999 799999999999999999999999999986542110000 00 113444444455589999998654
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.005 Score=49.12 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=46.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 45799999999999999999998 568888886 57777776654
Q ss_pred hHHHHHHHHHhcccCCCEEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 3322 1233456778888763
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0046 Score=60.91 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=73.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCH---HHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDP---ESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~---~e~~~~l~~~dvIil~vp~ 83 (474)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+......+.......+. .+.... +|+||-++|-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~---~divINaTp~ 204 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhh---cCEEEEcCCC
Confidence 479999999999999999999997 799999999999988765321000000111122 223333 8999999986
Q ss_pred ChhHH--HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVD--ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~--~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+-.-. ..+. ...+.++.++.|.--.+..+ .+.+..+++|...++
T Consensus 205 Gm~~~~~~~~~--~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 205 GMPAHPGTAFD--VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCCCC--HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 52100 0011 12356778999987654333 344555666765543
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=62.69 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=82.2
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCC-CCccc-cCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGD-LPLFG-FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~-~~~~~-~~s~~e~~~~l~~~dvIil~v 81 (474)
+|+||+||| .|.-|..|.+.|+.+- .+|..+..+..+-+.+.+...+..+ ..... ..+.+++ ....||+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 478999998 7999999999998774 3766666554333333332221000 00111 1123333 123489999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHH-HHc--CCeEEecCCCCCcccc---cCCC--ccccCCC-
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAM-AEL--GLLYLGMGVSGGEEGA---RHGP--SLMPGGS- 152 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l-~~~--g~~~v~~pvsgg~~~a---~~G~--~i~~gg~- 152 (474)
|++. ..+....+ +.+|..|||+|+-.--...+..+.+ ... +-.+++--+.|-++-. ..+. .-.+|+-
T Consensus 79 Phg~-s~~~v~~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCyp 154 (349)
T COG0002 79 PHGV-SAELVPEL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYP 154 (349)
T ss_pred Cchh-HHHHHHHH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchH
Confidence 9984 33333333 3467779999997633322333222 111 1123333344444322 1233 3346663
Q ss_pred HHHHHHHHHHHHH
Q 011931 153 FEAYKYIEDILLK 165 (474)
Q Consensus 153 ~~~~~~v~~ll~~ 165 (474)
..+.-.+.|+++.
T Consensus 155 Ta~iLal~PL~~~ 167 (349)
T COG0002 155 TAAILALAPLVKA 167 (349)
T ss_pred HHHHHHHHHHHHc
Confidence 3444556777765
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0096 Score=55.67 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=52.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|-|||.|.+|...+..|.+.|++|++++++.. .+..+.+.+ .+.... ...+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 4799999999999999999999999999987742 334444332 122211 1111 1133499999998876
Q ss_pred hHHHHHHHHH
Q 011931 86 PVDETIKTLS 95 (474)
Q Consensus 86 ~v~~vl~~l~ 95 (474)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5665554433
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0052 Score=60.81 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCCh---HHHHHHHHhhhhcC-CCCcccc--CCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTT---SKVDETVERAKKEG-DLPLFGF--RDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~~~~~~-~~~~~~~--~s~~e~~~~l~~~dvIil~ 80 (474)
+++.|+|+|-+|++++..|++.|.+ |+++||++ ++.+++.+.....+ ...+... ++.+++.+.+..+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666655332110 0001111 1222222223348999999
Q ss_pred cCCChh--HHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+|.+-. .+. .+.. ...+.++.+|+|.--.+..+ .+.+..++.|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeee
Confidence 987621 010 0100 13467788999987665433 34455566666544
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=56.71 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=51.5
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCC
Q 011931 10 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|.|+|+ |.+|..++..|++.|++|++..|++++.+. ..+.. -+.. ..+++.+.+.++.+|.||.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~----~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVE----IIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEE----EEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccc----cceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998876 11110 0111 235555555566699999999864
|
... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.016 Score=61.06 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++.... +..+.......+.... +|+||.+.-.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEFLEG---VDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhHhhc---CCEEEECCCC
Confidence 4579999999999999999999999999999985 3333322221110 0012222223344444 8999987643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0062 Score=64.57 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=39.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (474)
-.+|.|+|+|.+|...+..+...|.+|+++|+++++.+...+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999999999999887776553
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0025 Score=65.42 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHH-HhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF-VNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~-~~~l~~~dvIil~vp 82 (474)
+++||+|+| .|..|..|.+.|.++ +++|+.+.++....+.+................+.+.. ++. +|+||+++|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~---~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSD---VDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcC---CCEEEEcCC
Confidence 456899999 599999999999988 67999887765443322221100000001111112211 244 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+ ....++.. +..|..|||.|+..
T Consensus 114 ~~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 114 HG-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred HH-HHHHHHHH----HhCCCEEEEcCchh
Confidence 86 44444443 44689999999865
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0046 Score=64.98 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=73.4
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.+|+|||+ |.+|..+.++|.+.|| +|+.+|+..+.+ . ++.++.+++|+-.. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---~---------G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---L---------GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---C---------CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 8899999999999998 566666553311 0 36678899998665 89999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCch-------hHHHHHHHHHHcCCeEEe
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-------NTERREKAMAELGLLYLG 131 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-------~~~~~~~~l~~~g~~~v~ 131 (474)
|.. .+.++++++... .-..+||- |.+.++ ..+++.+..++.|+++++
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 985 778888777653 23344443 333222 123455556677888775
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=61.77 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=66.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~-- 85 (474)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++...... .... ......+.+.+. +|+||.+.+.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~-~~~~------~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCP-YIHE------RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhH-HHhh------hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 4799999999999999999999999999998876433211 0000 011233333344 898888875442
Q ss_pred -hHHHHHH---------HHH-hc--c-cCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 86 -PVDETIK---------TLS-AY--M-EKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 -~v~~vl~---------~l~-~~--l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.++...+ .+. .. . ....|-|..|++.-.++.-+...|...|..
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~ 130 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIP 130 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCC
Confidence 1222221 111 11 1 112355677777765666666777766643
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=58.90 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=47.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC----CCccc-cCCHHHHHhhcCCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD----LPLFG-FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~----~~~~~-~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|||+|.+|.++|..|+..+. ++.++|+++++++.......+... .+.+. ..+.+++ +. ||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~~---aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-AD---ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-CC---CCEEEECC
Confidence 69999999999999999998886 799999998765543322211000 01122 2344433 33 99999987
Q ss_pred CC
Q 011931 82 KA 83 (474)
Q Consensus 82 p~ 83 (474)
-.
T Consensus 77 G~ 78 (307)
T cd05290 77 GP 78 (307)
T ss_pred CC
Confidence 53
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.015 Score=61.52 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-----HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-----KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECC
Confidence 45899999999999999999999999999998753 1223333221 11111222333344 89988873
Q ss_pred --CCC-hhHHHHHH---------HHHhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 82 --KAG-APVDETIK---------TLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 --p~~-~~v~~vl~---------~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|+. ..+....+ +++..+.+.. |-|..|++.-.++.-+...|...|...
T Consensus 86 gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 86 SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 111 12222111 1111122223 446666666555555566666666543
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00093 Score=54.61 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=58.0
Q ss_pred CcEEEEcccHhHHHHHHHHH-HCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIA-EKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~-~~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|.|+|+|.+|..++.++. ..|+.+ .++|.++++..+... ++....+.+++.+.+ +.|+.+++||+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~--------gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG--------GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEET--------TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC--------CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999886544 557765 588999886532111 366777899988877 599999999985
Q ss_pred hHHHHHHHHHh
Q 011931 86 PVDETIKTLSA 96 (474)
Q Consensus 86 ~v~~vl~~l~~ 96 (474)
.+.++..++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56777766655
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0094 Score=58.63 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=79.8
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..||.|.| .|.+|..+-.+|...|++ .++..+|.+- ++. .++.++.+.+|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 35799999 899999999999999998 7777776521 111 1367888999987741 259999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+.++++++...- -+.+||-.+.......+++.+..++.|+++++.-..|
T Consensus 75 -~v~~~l~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 6777777766522 2234443333332223566677778899988754443
|
ATP citrate lyases appear to form an outgroup. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0052 Score=61.23 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=58.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc-CCCCcccc-C--CHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE-GDLPLFGF-R--DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-~~~~~~~~-~--s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+ |.+|.++|..|+..|. ++.++|++ +++...-...+. ....+..+ . ++.+..+. +|+||++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~d---aDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKG---ADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCC---CCEEEEe
Confidence 58999999 9999999999998885 79999998 322111111110 00023322 2 22333343 9999998
Q ss_pred cCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. . ++++.+.+.++ .+..+||..||-.
T Consensus 76 aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 76 AGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 75431 1 22333444444 4678888888843
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0071 Score=60.52 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=59.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcC-CCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQ-KPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~-~~dvIil~vp~~~~ 86 (474)
.+|+|+|+|-+|..-.+-....|.+|+++|++++|.+.+.+.++.. ....+..+..+.++ ..|+||.+++ +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997766555555558999999999999998888776531 22211122222211 1789998888 555
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..+ ..|+++-.++-.+..
T Consensus 242 ~~~~l----~~l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSL----KALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHH----HHHhcCCEEEEECCC
Confidence 55444 345555555555544
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.02 Score=53.54 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=68.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+.- .....+-.-+....+.+..+. +++-+.+.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEEehhc
Confidence 4579999999999999999999997 89999988432222221100 000000001111222222221 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. .. .+...+..-++||+++... ..-..+.+.+...++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~~-~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDNF-ATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 1223345668999887553 344445566677788888876544
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.021 Score=60.83 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=67.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~~ 85 (474)
.+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.+. .+.......+.++. +|+||.+- |...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCCC
Confidence 57999999999999999999999999999988776555443221 11111122333444 89888865 3221
Q ss_pred h-HHHHHH---------HHHhcc------c-C-CCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 86 P-VDETIK---------TLSAYM------E-K-GDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 86 ~-v~~vl~---------~l~~~l------~-~-g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
. +...-+ ++.-.+ . + ..|-|..|+++-.++.-+...|...|...
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~ 146 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRS 146 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCce
Confidence 1 111110 121111 1 2 23446677777555555667777766543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.016 Score=58.61 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=68.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh---hcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK---KEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~---~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|.|||+|.+|+.+|..|+..|+ +++++|++.-....+..+.- ...+.+..-+....+.+..+. +++-+.+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEEEEEe
Confidence 4579999999999999999999998 89999988522211111000 000000000111122222221 455565654
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.... ...++++ +..-++|||++... ..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~~~---~~~~DlVid~~D~~-~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVT-VEELEEL---VKEVDLIIDATDNF-DTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCC-HHHHHHH---hcCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 4321 2223333 44568999998543 333334455567788888766544
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.006 Score=59.69 Aligned_cols=74 Identities=16% Similarity=0.317 Sum_probs=59.0
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||-|. +|.++|..|.+.|..|+++++. +.++++.+++ +|+||.+++-+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------------------TKNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------------------CCCHHHHHhh---CCEEEEcCCCccc
Confidence 4799999888 9999999999999999999754 1245666666 9999999966543
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5678999999998654
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=48.15 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~ 263 (474)
-.++++|++.|++.+..+++++|...+|++.| +|..++.+.+.. +.... ...+.-+-.+++ + =+.+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~~--d~ri~-------~~~~~pg~g~GG-~---Clpk 67 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAANT--DPRIG-------PHYLRPGPGFGG-S---CLPK 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHHT--STTTT-------SSS-S-SSS--S-S---CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHcc--Ccccc-------cccCCCCCCCCC-c---chhh
Confidence 36889999999999999999999999999999 999999988731 11111 111111101222 1 2334
Q ss_pred hcCCCccHHHHHHHHHHcCCCcccHHHH
Q 011931 264 KTGMKGTGKWTVQQAADLSVAAPTIEER 291 (474)
Q Consensus 264 ~~~~k~tg~~~~~~a~~~gv~~p~~~~r 291 (474)
|.. .....+.++|.+.++++.-
T Consensus 68 D~~------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 68 DPY------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp HHH------HHHHHHHHTTSHHHHHHHH
T ss_pred hHH------HHHHHHHHcCCCHHHHHHH
Confidence 443 5667889999998866443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0084 Score=60.35 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=74.4
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+.++|.|+|+ |.||+.+++.|+++ | .++++++|+++++..+..+... .. ..++.++... +|+|+.+..
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts 224 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVAS 224 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCc
Confidence 3467999998 89999999999864 5 5899999999888887654321 11 1245555555 999998886
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+..+ +++. ..+.++.++||.+-- .+... .+...|+.+++.++.-
T Consensus 225 ~~~~~--~I~~--~~l~~~~~viDiAvP--RDVd~---~v~~~~V~v~~gG~V~ 269 (340)
T PRK14982 225 MPKGV--EIDP--ETLKKPCLMIDGGYP--KNLDT---KVQGPGIHVLKGGIVE 269 (340)
T ss_pred CCcCC--cCCH--HHhCCCeEEEEecCC--CCCCc---ccCCCCEEEEeCCccc
Confidence 54321 1211 234688999998753 33322 1123678887766543
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.015 Score=51.99 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=50.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|-|||.|.+|...++.|.+.|++|++++.+ ..+++.+.. .+... ..+++ ..+..+|+||.++.++ +
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 57999999999999999999999999999643 334443321 11111 11111 1234489999988775 5
Q ss_pred HHHHHHHHH
Q 011931 87 VDETIKTLS 95 (474)
Q Consensus 87 v~~vl~~l~ 95 (474)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 665554443
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.016 Score=49.05 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=60.7
Q ss_pred cccHhHHHHHHHHHHC----CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 14 GLAVMGQNLALNIAEK----GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 14 GlG~mG~~lA~~L~~~----G~~V~-v~dr~~~~~~-~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|.||+.++..|.+. +++|. ++||+ .... ....... +...+.+++++++.. .+|+||-|.+. +.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999876 46665 77888 1110 0111111 135678999998832 29999999554 455
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCch---hHHHHHHHHHHcCCeE
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYE---NTERREKAMAELGLLY 129 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~---~~~~~~~~l~~~g~~~ 129 (474)
.+.+ .+.|+.|.-||..+..... .-.++.+..++.|.+|
T Consensus 73 ~~~~---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEYY---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHH---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHH---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 4443 4456688889888765433 2223334444556654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0032 Score=56.92 Aligned_cols=84 Identities=23% Similarity=0.431 Sum_probs=57.6
Q ss_pred CCcCcEEEEcccHhHHHHHH-HHH-HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 5 KQLTRIGLAGLAVMGQNLAL-NIA-EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~-~L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.++.++.|||.|++|++++. ++. ++|+++. +||.+++++-..... ..+.-.+++++.++. .+.|+.|+||
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtV 154 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTV 154 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEc
Confidence 35678999999999999984 343 6688765 899999866443321 123334566777764 2479999999
Q ss_pred CCChhHHHHHHHHHh
Q 011931 82 KAGAPVDETIKTLSA 96 (474)
Q Consensus 82 p~~~~v~~vl~~l~~ 96 (474)
|.. ....+.+.|..
T Consensus 155 Pa~-~AQ~vad~Lv~ 168 (211)
T COG2344 155 PAE-HAQEVADRLVK 168 (211)
T ss_pred cHH-HHHHHHHHHHH
Confidence 985 55666665554
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.024 Score=53.06 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=47.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~---~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+|.|||.|.+|..-++.|++.|.+|++++.+.. .+..+.+.+ ++.. .....+ +.. +++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~~---~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LEG---AFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hCC---cEEEEECCCC
Confidence 4799999999999999999999999999988753 344454433 1222 112233 333 8999988776
Q ss_pred C
Q 011931 84 G 84 (474)
Q Consensus 84 ~ 84 (474)
.
T Consensus 80 ~ 80 (205)
T TIGR01470 80 E 80 (205)
T ss_pred H
Confidence 5
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.007 Score=54.24 Aligned_cols=75 Identities=16% Similarity=0.415 Sum_probs=52.0
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++.-+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999977 599999999999999999988553 245556666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 246889999999988754
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=57.90 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=73.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHhhhhcCCCCccccCCHHH---HHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKKEGDLPLFGFRDPES---FVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~~~~~~~~~~s~~e---~~~~l~~~dvIil~ 80 (474)
.++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999886 899999995 5777776643210000011 122221 12223348999999
Q ss_pred cCCChh--HHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+|.+-. .+. .... ...++++.++.|.--.+. .| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNPH-MT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCCc-cC-HHHHHHHHCCCeEEC
Confidence 987521 011 1100 123567889999876543 33 455555667766543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.004 Score=62.89 Aligned_cols=92 Identities=14% Similarity=0.220 Sum_probs=58.3
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcE---EEEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPI---SVYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~v 81 (474)
|+||+||| .|..|..+.+.|.++||++ ....++.+..+.+.-.+. .+...+ +..++ +. +|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~-----~i~v~d~~~~~~-~~---vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK-----ELKVEDLTTFDF-SG---VDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc-----eeEEeeCCHHHH-cC---CCEEEECC
Confidence 46899998 8999999999999988864 555444333222211110 122221 22222 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.. ...++...+ +..|..|||.|+..
T Consensus 72 g~g-~s~~~~~~~---~~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKA---AAAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 986 444454443 34688999999753
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=58.33 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=70.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--------CCcEE-EEeCChHH-------HHHHHHhhhhcCCCCccccC--CHHHHHh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--------GFPIS-VYNRTTSK-------VDETVERAKKEGDLPLFGFR--DPESFVN 69 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--------G~~V~-v~dr~~~~-------~~~l~~~~~~~~~~~~~~~~--s~~e~~~ 69 (474)
|+|+|||+|++|+.+++.|.++ +.+|. +.|++... ++++.+.... +........ +.+++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 34543 66766422 2222221110 000001112 4566543
Q ss_pred hcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCeEE-ecCCCCCc
Q 011931 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLLYL-GMGVSGGE 138 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~v-~~pvsgg~ 138 (474)
..+|+||-|+|....-.....-+.+.|+.|..||..+...... -.++.+..+++|.++. .+.|.+|.
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGV 148 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeecc
Confidence 2489999999854222223444556677898888766543221 2233444455666543 45555543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=53.31 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=62.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
||.|||+|.+|+.++.+|++.|. +++++|.+. +.+.+-.-..... +-.-+....+.++.+. +++=+.+.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~v---g~~Ka~~~~~~l~~ln-p~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQI---GEPKVEALKENLREIN-PFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhC---CChHHHHHHHHHHHHC-CCCEEEEEEee
Confidence 58999999999999999999998 599999885 2222111000000 0000111122222221 33334444322
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~v~~pvsg 136 (474)
-. ..- +...++.-++||+++.. +..-..+.+.+.++ ++.|+.+.+.+
T Consensus 77 ~~-~~~---~~~~l~~~DlVi~~~d~-~~~r~~i~~~~~~~~~ip~i~~~~~~ 124 (174)
T cd01487 77 ID-ENN---LEGLFGDCDIVVEAFDN-AETKAMLAESLLGNKNKPVVCASGMA 124 (174)
T ss_pred cC-hhh---HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEehhh
Confidence 11 111 22234456899998443 33333344555554 88887764443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=57.29 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=77.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..||.|.| .|.+|..+..+|.+.|++ .+|=.+|.. .+++. ++.++.+++|+.+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 45899999 588999999999999997 555444431 11111 367788999887621 269999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+.+++++.... .-+..||-++.....+.+++.+..++.|+++++.-..|
T Consensus 77 -~v~~~l~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 677777766652 22334444443332333466677778899998755443
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.028 Score=59.66 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccC--CHHHHHhhcCCCcEEEEe--cC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFR--DPESFVNSIQKPRVIIML--VK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~--s~~e~~~~l~~~dvIil~--vp 82 (474)
+++|.|+|+|..|.++|+.|.+.|++|+++|+++....++.+.. ++.... ...+.+.+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 46799999999999999999999999999998876554432321 132221 22333344 8988876 34
Q ss_pred CChh-HHHHHH---------HHHhc------c-cCCC-EEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 83 AGAP-VDETIK---------TLSAY------M-EKGD-CIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 83 ~~~~-v~~vl~---------~l~~~------l-~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+... +....+ ++.-. . .+.. |-|..|+++-.++.-+...|...|...
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 3322 222110 11111 1 1223 446666666555555667777666543
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.033 Score=58.83 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=66.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
.++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+.+.. +|+||.+ +|+.
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~~---~d~vv~sp~i~~~ 78 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWSG---FAALVLSPGVPLT 78 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHcC---CCEEEECCCCCcc
Confidence 35799999999999999999999999999998765444443322 2221111122233 8988863 2322
Q ss_pred h-----hHHHHHH---------HHHhcc-c----CCC-EEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 85 A-----PVDETIK---------TLSAYM-E----KGD-CIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~-----~v~~vl~---------~l~~~l-~----~g~-iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
. .+....+ ++.... . +.. |-|..|++.-.++.-+...|+..|..+.
T Consensus 79 ~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~ 144 (460)
T PRK01390 79 HPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQ 144 (460)
T ss_pred CCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeE
Confidence 1 2332221 111111 1 223 4466666665555555667777676543
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0062 Score=59.89 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=55.8
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|. .|.+++..|.+.|..|+++++... ++.+.+.+ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 4799999997 999999999999999999997321 23333344 9999999975432
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|+|.+...
T Consensus 216 v~------~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IK------KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred CC------HHHcCCCCEEEEEEEee
Confidence 21 13478999999988653
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0035 Score=59.15 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=51.5
Q ss_pred cCcEEEEcccHhHHHHHHHH--HHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.++++. ..+|.|++|+|.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~ 156 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPA 156 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCc
Confidence 35799999999999999863 35688777 67988776532211 0 012223455666543 248999999998
Q ss_pred ChhHHHHHHHH
Q 011931 84 GAPVDETIKTL 94 (474)
Q Consensus 84 ~~~v~~vl~~l 94 (474)
. ...++.+.+
T Consensus 157 ~-~~~~i~~~l 166 (213)
T PRK05472 157 E-AAQEVADRL 166 (213)
T ss_pred h-hHHHHHHHH
Confidence 6 344444433
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.017 Score=58.04 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=59.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~ 74 (474)
.||+|||+ |.+|.++|..|+..|. ++.++|+++ ++++.......+.. ..+.....+..+.+++ |
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---a 80 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD---V 80 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC---C
Confidence 58999998 9999999999998885 799999964 32332221111100 0012222333334444 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++.-.+ .. ++++...+..+-++..+++..||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 9999987442 11 33344555555544777777775
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.037 Score=59.10 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=70.3
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
|.+.....+|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.+.+.+.. ..+.......+.++. +|+||
T Consensus 1 ~~~~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~---~~~~~g~~~~~~~~~---~d~vv 74 (498)
T PRK02006 1 MFGDLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPD---AEFVGGPFDPALLDG---VDLVA 74 (498)
T ss_pred CccccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCC---cEEEeCCCchhHhcC---CCEEE
Confidence 33333445799999999999999999999999999997542 23334333210 011111122344444 89998
Q ss_pred Ee--cCCC-----hhHHHH-------------HHHHHhcc-----cCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 79 ML--VKAG-----APVDET-------------IKTLSAYM-----EKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 79 l~--vp~~-----~~v~~v-------------l~~l~~~l-----~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
.. +|+. ..+... +..+...+ .+..|-|-.|++.-.++.-+...|...|...
T Consensus 75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 86 4442 122111 11122111 1234556777777666666677777776543
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=57.98 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcC---CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEG---DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~ 73 (474)
..||+|||+ |.+|.++|..|+..|. ++.++|++++ +++...-...+.. ..+...+.+..+.++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d--- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD--- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC---
Confidence 458999998 9999999999987664 7999999543 2222111110000 0012233333344444
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 74 ~dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||++--.+ .. ++++...+..+..+..++|..||-
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 99999876432 11 233334555555467777777763
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=58.93 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=45.6
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCC--CcEEEEeCChHHHH--HHHHhhhhcCCCCccccCCH---HHHHhhcCCCcEE
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKKEGDLPLFGFRDP---ESFVNSIQKPRVI 77 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~~~~~~~~~~s~---~e~~~~l~~~dvI 77 (474)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++ .+.++. +|+|
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~g---aDvV 80 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRG---ADLV 80 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCC---CCEE
Confidence 5679999999 999999999999655 58999999432211 22111110 012223232 344444 9999
Q ss_pred EEecCC
Q 011931 78 IMLVKA 83 (474)
Q Consensus 78 il~vp~ 83 (474)
|++.-.
T Consensus 81 VitaG~ 86 (321)
T PTZ00325 81 LICAGV 86 (321)
T ss_pred EECCCC
Confidence 998755
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.012 Score=59.05 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCcCcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCCh
Q 011931 5 KQLTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTT 40 (474)
Q Consensus 5 ~~~~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~ 40 (474)
....||+|||+ |.+|..+|..|+..+. ++.++|+++
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 34568999999 9999999999997765 899999987
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0092 Score=59.56 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=58.5
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHH--HHHHhhhhcCCCCccccC---CHHHHHhhcCCCcEEEEe
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVD--ETVERAKKEGDLPLFGFR---DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~~~~~~~~~~~~~~---s~~e~~~~l~~~dvIil~ 80 (474)
||+|||+ |.+|.++|..|+..++ ++.++|+++...+ .+.. ... ..++..+. ++.+..+. +|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~--~~~i~~~~~~~~~~~~~~d---aDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPT--AASVKGFSGEEGLENALKG---ADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCc--CceEEEecCCCchHHHcCC---CCEEEEe
Confidence 6999999 9999999999998876 7999999872111 1111 100 00223211 12344444 9999998
Q ss_pred cCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. . ++++...+..+ .+..+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 75431 1 22333444444 5778888888854
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.021 Score=57.12 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHH---CCCcEEEEeCChHHH---HHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEE
Q 011931 8 TRIGLAGL-AVMGQNLALNIAE---KGFPISVYNRTTSKV---DETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVII 78 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIi 78 (474)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+.... . ...+.. .+++.+.++. +|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~--~~~i~~~~~~d~~~~l~~---~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-T--AVKIKGFSGEDPTPALEG---ADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-C--CceEEEeCCCCHHHHcCC---CCEEE
Confidence 68999999 9999999988854 356899999985431 1111100 0 001222 2343444444 99999
Q ss_pred EecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 79 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9986421 122333444443 4667888887754
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.042 Score=54.45 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=85.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++++.+|.++|.+..+.+++++|++.+.++ .++|.+++.++.+.+. .+|+.++.-...+.+++ . +
T Consensus 161 ~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~-~-----~ 227 (292)
T PRK15059 161 GNGDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGGF-ASSRILEVHGERMIKRT-F-----N 227 (292)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcCc-ccCHHHHhhchhhhcCC-C-----C
Confidence 34788999999999999999999999988664 3499999999998773 67887775544332221 1 1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcC----CCchhHHHHHHhh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRR----ERLPANLVQAQRD 445 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~----~~~~~~~i~a~rd 445 (474)
+.|.- .-...+++-++..|-+.|+|+|....+.++|+.... +.-...+++..++
T Consensus 228 ~~f~l--~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 228 PGFKI--ALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred CCCch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 22322 233566789999999999999999888887764332 2223555555554
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.025 Score=58.99 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=63.5
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-------CC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-------GF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~ 73 (474)
--||+|||+ |.+|.++|..|+.. |. ++.++|++.++++...-...+.. ..++....+..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd--- 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD--- 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---
Confidence 358999999 99999999999987 65 78899999988765443221100 0023322333333444
Q ss_pred CcEEEEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 74 PRVIIMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 74 ~dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||++...+. . ++++...|.+...+..+||..||-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 999999874421 1 223334454434567788888863
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=59.47 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHhhhhcC---CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKKEG---DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~ 74 (474)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++...-...+.. ..++....+..+.++. |
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---a 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKD---A 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCC---C
Confidence 48999999 9999999999998876 79999995432 322211111000 0012222333333344 9
Q ss_pred cEEEEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++--.+. . ++++...+..+-.+..++|..||
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99999874421 1 23333445554434667777775
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.017 Score=50.63 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=51.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|+| -...|.+++..|.+.|..|++++++. .++++.+++ +|+|+.+++....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 3567776 55566777777777777777666431 156666777 9999999987632
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ .+.+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 24588999999988765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=57.86 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=57.8
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||-| .+|.++|..|.++|..|++++... .++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 479999999 999999999999999999986321 134455666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 23568999999998754
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=53.77 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCc-cccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPL-FGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~-~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..+|.|||+|..|+.++.+|+..|. +++++|.+.-....+..+.-. ....+. ......++.+..+ .+++.+.+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVG 105 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEec
Confidence 3579999999999999999999997 788999875444433322100 000000 0000111112221 26777766543
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.- .++-+.+ .++.-++|||+.-.. ..-..+.+.+.+.++.++.+.+.|
T Consensus 106 ~~-~~~~~~~---~l~~~D~Vid~~d~~-~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 106 RL-SEENIDE---VLKGVDVIVDCLDNF-ETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred cC-CHHHHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEeecc
Confidence 21 1112222 345668999987663 333344455667888888876654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.059 Score=56.63 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=65.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV-- 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v-- 81 (474)
++|.|+|.|.+|.++|+.|++.|++|+++|++.... +++.+.+. .+.......+.... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 479999999999999999999999999999875322 23332221 11111233333221 278887754
Q ss_pred CCCh-hHHHHH---------HHHHhcc-cCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 82 KAGA-PVDETI---------KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|... .++... .++...+ ....|-|..|++.-.++.-+...|...|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 3322 222222 1222222 2234556667776555555666777666543
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.032 Score=58.12 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=75.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEE-e----------CChHHHHHHHHhhh-hcCCC----CccccCCHHHHHhh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVY-N----------RTTSKVDETVERAK-KEGDL----PLFGFRDPESFVNS 70 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~~~-~~~~~----~~~~~~s~~e~~~~ 70 (474)
-++|+|.|.|++|+.+|+.|.+.|.+|++. | .+.+.+.+..+... ....+ +.. ..+.+++...
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~~~ 310 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPWSV 310 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccccc
Confidence 358999999999999999999999999866 8 66665555443210 00000 001 1123333321
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+||++|-|.....-..+....+.+ ..=++|+..+|... +.+..+.|.++|+.++.
T Consensus 311 --d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 --PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred --CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 499999998776444444444432 13468888888763 55677788999998875
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0048 Score=53.67 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=68.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.||.|+|+|.+|+.++.+|+..|. +++++|.+.=....+..+.- .....+..-+...++.+.++. +++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cceeeeeeeccc
Confidence 589999999999999999999998 79999977422222111100 000000011112233333221 333344444321
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+..+.++. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 122333333 456899998766 3445566677788899999887654
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=62.31 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=69.0
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccc--------cCCC-c
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGA--------RHGP-S 146 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a--------~~G~-~ 146 (474)
||+|+|.. .+.+++.++.+.++++.+|.|.++++........+.+......||+. |+.|.+..- .+|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999985 78899999999999999999999998655555444443323568885 888876422 2455 3
Q ss_pred ccc-C--CCHHHHHHHHHHHHHHhccC
Q 011931 147 LMP-G--GSFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 147 i~~-g--g~~~~~~~v~~ll~~lg~~~ 170 (474)
+++ . .++++++.++++++.+|+++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~ 106 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADV 106 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 333 2 36788999999999999873
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.019 Score=56.28 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=71.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... ... ..++ . ...+|+||-|+|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999988876431 111 1111 1 1238999999986521
Q ss_pred --HH-H--HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 87 --VD-E--TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 87 --v~-~--vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.+ + .+. ...+.++.+++|..-.+..+ .+.+..+++|...+
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i 236 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALPAET--PLIRYARARGKTVI 236 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCCccC--HHHHHHHHCcCeEe
Confidence 00 0 011 12367788999987665433 34455566676554
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=54.48 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=61.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc--CC----HHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF--RD----PESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~--~s----~~e~~~~l~~~dvIil~ 80 (474)
++|.||| -..+|.+||..|.++|..|+++|.+.-.. +...+.. +-..+ .+ +.+.+++ +|+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 5799999 56789999999999999999998664322 1110000 00011 12 5566666 9999999
Q ss_pred cCCChh-HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGAP-VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+.. +. .+.+++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 998753 22 24578999999999764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.012 Score=58.75 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=48.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp 82 (474)
|||.|+| .|.+|+.++..|.++||+|++.+|++++...+...+. .+.. ..+++.+.+.++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 6999999999999999999999999876544332211 0111 1234444444555899988764
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0077 Score=60.75 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=55.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+|++|+|+| .|..|..+.+.|.+++|++. .. .+.+...+........ ..+... +..++ +. +|++|+++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~--l~~~~~-~~~~~-~~---vD~vFla~ 74 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKN--LRVREV-DSFDF-SQ---VQLAFFAA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcc--eEEeeC-ChHHh-cC---CCEEEEcC
Confidence 347999999 59999999999998877543 33 2222221111110000 011111 22333 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|++ ....+...+. ..|..|||.|+..
T Consensus 75 p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 75 GAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 975 4444444433 4688999999865
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=48.85 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHh
Q 011931 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSA 96 (474)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~ 96 (474)
.-+..|+..|.+.|.+|.+||+.-............ ++..+++++++.+. +|.||++++.+.--+--.+.+..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~---~D~vvl~t~h~~f~~l~~~~~~~ 89 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLE----GVEVCDDLEEALKG---ADAVVLATDHDEFRELDWEEIAK 89 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHH----CEEEESSHHHHHTT---ESEEEESS--GGGGCCGHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCcc----ceEEecCHHHHhcC---CCEEEEEecCHHHhccCHHHHHH
Confidence 346778999999999999999886544333211001 36677889998888 99999999987432223466777
Q ss_pred cccCCCEEEecCCCC
Q 011931 97 YMEKGDCIIDGGNEW 111 (474)
Q Consensus 97 ~l~~g~iiId~st~~ 111 (474)
.+.++.+|+|+-+..
T Consensus 90 ~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 90 LMRKPPVIIDGRNIL 104 (106)
T ss_dssp HSCSSEEEEESSSTS
T ss_pred hcCCCCEEEECcccc
Confidence 777889999987653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=53.60 Aligned_cols=123 Identities=14% Similarity=0.285 Sum_probs=69.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh------hhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA------KKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~------~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+. ... +..-+....+.++.+. +++-+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka~~~~~~L~~lN-p~v~i~ 94 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRAAASYEFLQELN-PNVKLS 94 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHHHHHHHHHHHHC-CCCEEE
Confidence 4689999999999999999999997 5899997742222221110 000 0001111222232222 566565
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+...... ...+.....+.+-++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 95 ~~~~~~~--~~~~~~~~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 95 IVEEDSL--SNDSNIEEYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred EEecccc--cchhhHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5543211 0011112234456789988544 4444556677778888888876544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.028 Score=54.03 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCCCCCcCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE--E
Q 011931 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV--I 77 (474)
Q Consensus 1 m~~~~~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv--I 77 (474)
|+...+.++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+.... . . +++ +
T Consensus 1 ~~~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~--------~---~~~~~~ 61 (262)
T PRK13394 1 MMSNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--------A--------G---GKAIGV 61 (262)
T ss_pred CcccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--------c--------C---ceEEEE
Confidence 455444556888875 9999999999999999999999998877666543211 0 0 222 2
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..-+.+...++.+++++.....+-++||++...
T Consensus 62 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 62 AMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 222333345555666555544555777777654
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.035 Score=57.39 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=72.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCCc
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l~~~d 75 (474)
++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+.......+ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999988 77876 55554433322100000 0011 133343322 489
Q ss_pred EEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 76 VIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 76 vIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+++-|--.. ++ .+..+.+ +=.+|+..+|... +.+..+.|.++|+.|+.-
T Consensus 284 vliP~Al~~-----~I~~~na~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 284 VLIPAALGG-----VINKENAADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPD 333 (410)
T ss_pred EEeeccccc-----cCCHhHHHHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 888775433 23 2233334 4578888888864 556778889999988853
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.086 Score=49.79 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=36.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 46888875 8999999999999999999999999887766543
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.016 Score=56.69 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=57.7
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||-+. +|.++|..|.+.|..|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------------------TDDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------------------CCCHHHHHhh---CCEEEEccCCccc
Confidence 4799999888 9999999999999999999842 2245666666 9999998876643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 2357899999999875
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.03 Score=55.57 Aligned_cols=98 Identities=13% Similarity=0.241 Sum_probs=57.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccC--CHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFR--DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~--s~~e~~~~l~~~dvIil~ 80 (474)
+||+|||+|.+|+++|..|...+. ++.++|+++++.+-......+.. ..+..... +.+++ +.+|+|+++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~----~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDL----KGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhh----cCCCEEEEe
Confidence 589999999999999999987764 79999999655433221111100 00122222 23333 339999998
Q ss_pred cCC----Chh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKA----GAP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~----~~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.-. +.. ++++..++.... ++.+++-.||-
T Consensus 77 AG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNP 120 (313)
T COG0039 77 AGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNP 120 (313)
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCc
Confidence 822 211 222334444443 46677777764
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.043 Score=56.29 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=60.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-c----EE--EE--eCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-P----IS--VY--NRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~ 74 (474)
-||+|||+ |.+|.++|..|+..|. . |. ++ |++.++++...-...+.. ..++....+..+..+. +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 58999999 9999999999998775 2 33 44 888887665443221100 0023323333333444 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
|+||++...+ .. ++++...+.++..+..+||..||-
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 9999976432 11 233334555555567778888763
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.06 Score=53.28 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=76.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++++.+|.++|.+..+.+..+.|++.+.++. ++|.+++.++|+.+ ..+|.+++.....+.+.+ ..
T Consensus 164 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~d-~~----- 230 (296)
T PRK11559 164 DIGAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDRN-FK----- 230 (296)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcCC-CC-----
Confidence 346788999999999999999999999997753 49999999999876 456776665433222221 11
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 430 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~ 430 (474)
+.|.- .-...+++-++..|-+.|+|.|.+..+...|+..
T Consensus 231 ~~f~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 231 PGFRI--DLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred CCcch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 12221 1224456888999999999999999999866643
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.03 Score=56.62 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=69.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCC--CccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDL--PLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-~~~--~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.-.. ... +..-+....+.++.+. +++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcEEEEEe
Confidence 4689999999999999999999998 8999998753333322110000 000 0000111222223221 455555554
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
..-. ..-+. +.+..-++|||++... ..-..+.+.+...++.++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn~-~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDNF-ETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeeee
Confidence 3211 11222 2345668999997754 344445555667788888765544
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.063 Score=50.58 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|....+.++|-|.| .|.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..
T Consensus 1 ~~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~ 61 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGI 61 (239)
T ss_pred CCCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEe
Confidence 33333445788887 69999999999999999999999998765544332110 01 334444
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
-+.+...++.+++++.....+-+.|++....
T Consensus 62 D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 62 DLVDPQAARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred ecCCHHHHHHHHHHHHHHhCCcCEEEECCcc
Confidence 4555556666666665544445677776543
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.056 Score=57.16 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=67.7
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec-
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v- 81 (474)
+.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~~---~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIKD---ADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCCC---CCEEEECCC
Confidence 3457999999999999 89999999999999997653 233333322 2222 112233333 89888754
Q ss_pred -CCC-hhHHHHH---------HHHHhcc-cC-CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 82 -KAG-APVDETI---------KTLSAYM-EK-GDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 82 -p~~-~~v~~vl---------~~l~~~l-~~-g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
|.. ..+.... -+++..+ .+ ..|-|..|++.-.++.-+...|+..|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 322 2222221 1232222 22 345577777776666666777777774
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=54.49 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=51.0
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011931 10 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|.|+|+ |.+|+.++..|.+.+++|.+.-|++. ..+.+...+... +. -..+.+.+.+.|+.+|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999999999999999864 355555443210 11 133566666677779999999984
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.017 Score=58.04 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=57.6
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhc--C-CCCccccCCHHHHHhhcCCCc
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKE--G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++.+.......+. . ........+..+.++. ||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999997663 599999987 5433221111000 0 0011222344455555 99
Q ss_pred EEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 76 VIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 76 vIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
+||++--.+ .. ++++...+.++..+..++|-.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999876432 11 23333455554346666666665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.02 Score=55.91 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=58.1
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||-+ .+|.++|..|.++|..|+++... +.++.+.+++ +|+||.++.-+.-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------------------T~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF---------------------TKDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CcCHHHHHhh---CCEEEEecCcccc
Confidence 479999988 99999999999999999988632 1245566666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 24578999999998764
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.077 Score=53.63 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=70.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHH--------CCC--cEE-EEeCChHH-------HHHHHHhhhhcCCC-Ccc-----ccC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAE--------KGF--PIS-VYNRTTSK-------VDETVERAKKEGDL-PLF-----GFR 62 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~--------~G~--~V~-v~dr~~~~-------~~~l~~~~~~~~~~-~~~-----~~~ 62 (474)
+++|+|+|+|++|+.+++.|.+ .|. +|. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998876 464 433 45654221 12222211110000 010 011
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe-cCCCCCcc
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG-MGVSGGEE 139 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v~-~pvsgg~~ 139 (474)
++.+++... .+|+||-+++.. ....++. ..+..|..||..++.... .-.++.+..++++..+.- +.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~~-~a~~~~~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTNDK-NAHEWHL---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCcH-HHHHHHH---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 566776432 389999998653 4444443 445678888877664211 223444444556776654 45665543
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.49 Score=48.16 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=96.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCC---------------Cc---cccCCHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDL---------------PL---FGFRDPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~---------------~~---~~~~s~~e~ 67 (474)
|.+|-|+|+|..+-.+|..|.+.+. .|-+.+|...+.+++.+.....+.. .+ ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 5679999999999999999988775 6899999888877776554331100 00 123445555
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEe-------cCCCCC
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELG--LLYLG-------MGVSGG 137 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~v~-------~pvsgg 137 (474)
... =|.+|+|||.+ +-.+|+++|.+. |..=+.||-.|... +.-.-+...+.+.+ +.+|. .-.+.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 554 79999999997 677888776542 44434555555544 33333444444433 33333 123333
Q ss_pred ccc---ccCCC--ccccCC---CHHHHHHHHHHHHHHhccC
Q 011931 138 EEG---ARHGP--SLMPGG---SFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 138 ~~~---a~~G~--~i~~gg---~~~~~~~v~~ll~~lg~~~ 170 (474)
... ...|. .+.+|. +....+++..+|+.++-+.
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 211 11222 355553 4556788889998888653
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.02 Score=57.95 Aligned_cols=92 Identities=12% Similarity=0.261 Sum_probs=57.2
Q ss_pred CCcCcEEEEc-ccHhHHHHHHHHHHCCCc---EEEE--eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEE
Q 011931 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFP---ISVY--NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVI 77 (474)
Q Consensus 5 ~~~~~IgiIG-lG~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvI 77 (474)
...+||+||| .|..|..+.+.|.+.+|+ +... .|+..+.-.. .+. .+.... +.++ ++. +|+|
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~-----~~~v~~~~~~~-~~~---~D~v 73 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGR-----DYTVEELTEDS-FDG---VDIA 73 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCc-----eeEEEeCCHHH-HcC---CCEE
Confidence 3457899998 899999999999998884 3222 3333322111 111 122221 2233 344 9999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|+|+|.+ ....+...+ ...|..|||.|+..
T Consensus 74 f~a~p~~-~s~~~~~~~---~~~g~~VIDlS~~f 103 (344)
T PLN02383 74 LFSAGGS-ISKKFGPIA---VDKGAVVVDNSSAF 103 (344)
T ss_pred EECCCcH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 9999987 444444433 24689999999754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.062 Score=57.06 Aligned_cols=116 Identities=14% Similarity=0.075 Sum_probs=65.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~--~s~~e~~~~l~~~dvIil~vp~ 83 (474)
..+|.|||.|..|..+|..|.+.|++|+++|+++. ....+.+..... ++... .... ... .+|+||++.--
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~-~~~---~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT-LPE---DTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc-ccC---CCCEEEECCCc
Confidence 35799999999999999999999999999996643 222222211111 12222 1222 222 38999987632
Q ss_pred ---ChhHHHHH---------HHHH-hcccC----CCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 84 ---GAPVDETI---------KTLS-AYMEK----GDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ---~~~v~~vl---------~~l~-~~l~~----g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+...- -+++ ..+.+ ..|-|-.|++.-.++.-+...|...|...
T Consensus 89 ~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 89 RPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred CCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 22111111 1222 22222 13556677777555555667777666543
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.027 Score=55.16 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------------------TQDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6778999999999999999988632 2356666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24578999999998764
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.077 Score=50.94 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=64.5
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCC-CcEE-EEeCChHHH-----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKG-FPIS-VYNRTTSKV-----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G-~~V~-v~dr~~~~~-----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
+||||+|+|+ |.||+.+.+.+.+.. +++. .++|.+... .++...+ ..++...+++...... +|++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEE
Confidence 4689999997 999999999998775 5544 778876532 1221111 1124445554554444 9998
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~ 125 (474)
|=-+.+. .....++-. +..+..+|-.||+......+..+.+.++
T Consensus 74 IDFT~P~-~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 74 IDFTTPE-ATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred EECCCch-hhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 8766553 444444433 3345556666776655444444444433
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.088 Score=55.55 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
||.|||+|..|.+.|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997653
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.051 Score=54.03 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=58.5
Q ss_pred EEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011931 12 LAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (474)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~- 85 (474)
|||+|.+|.++|..|+..+. ++.++|++.++++.......+.. ..+.....+..+..+. ||+||++...+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998876 79999998876554443222110 0012222232333344 999999775421
Q ss_pred ---h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 ---P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ---~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
. ++++.+.+..+ .+..+||..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 23333455554 467778888763
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.024 Score=56.86 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=32.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (474)
...+|-|||+|.||.-.+++|.++|. +|++.||+.+
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 34689999999999999999999996 6999999975
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.059 Score=57.94 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=71.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.++-|+|.|.+|++++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+-.-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998888764321 1111122222111 1268888788765210
Q ss_pred --HH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 88 --DE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 88 --~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+. -+. ...+++..+++|..-.+.. | .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPKI-T-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCCc-C-HHHHHHHHCCCeEe
Confidence 10 011 1236678899998776543 2 34444556665443
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.037 Score=54.21 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.5
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHH
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKV 43 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (474)
+|.|+|+ |.+|+.++..|.+.|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4788985 9999999999999999999999998754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.06 Score=51.27 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|+.....++|-|+| .|.+|..++..|++.|++|.+.+|++++.+.+.+.... .-.. .+++..
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~ 63 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAA 63 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEc
Confidence 34444446788888 59999999999999999999999998877665442210 0001 222222
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+...++.+++++.....+-++||++...
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 64 DLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333345555555555444445677776554
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.073 Score=56.04 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=69.5
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCccccC--CHHHHHhhcCCCcEEEEec--C
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGFR--DPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~~~~--s~~e~~~~l~~~dvIil~v--p 82 (474)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++.... ...+.+.. +|+||.+- |
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~~~~---~d~vV~sp~i~ 79 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDCELLVQ---ASEIIISPGLA 79 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCChHHhcC---CCEEEECCCCC
Confidence 599999999999999999999999999997643 2233433100 122211 12333444 89887743 3
Q ss_pred CC-hhHHHHH---------HHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 83 AG-APVDETI---------KTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 83 ~~-~~v~~vl---------~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
+. ..+.... -+++..+.+. .|-|-.|++.-.++.-+...|...|..+.-.+..|.
T Consensus 80 ~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 80 LDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 22 1222211 1233222233 345666777755666667777777765554444443
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.03 Score=55.14 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6678999999999999999988532 2356666677 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 24578999999998764
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.047 Score=54.96 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCC-------CcEEEEeCChH--HHHHHHHhhhhc---CCCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKG-------FPISVYNRTTS--KVDETVERAKKE---GDLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l~~~~~~~---~~~~~~~~~s~~e~~~~l~~~ 74 (474)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +++...-...+. ...++....++.+.++. |
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~---a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD---V 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC---C
Confidence 47999998 999999999998754 58999999653 222111000000 00012223454455555 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++.-.+ .. ++++...+..+..++.++|-.||
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999876432 11 12333455555456777777776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.033 Score=54.51 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++.||| -..+|.++|..|.++|..|+++... +.++.+.+++ +|+||.++.-+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 5678999999999999999988632 2356666777 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 24578999999999765
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.15 Score=49.34 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=69.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEE-EEe----------CChHHHHHHHHhhhhcCC----C-----CccccCCHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYN----------RTTSKVDETVERAKKEGD----L-----PLFGFRDPESF 67 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~~~----~-----~~~~~~s~~e~ 67 (474)
.+|.|-|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+.+.....+. + +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999988 656 233444333221110000 0 0111 134444
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... .||+++-|--...--.+....+.. .+=.+|+...|.+. +.+..+.|.++|+.++.-
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEECc
Confidence 332 489888775443222222223221 13468888888763 336778889999998853
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.031 Score=54.57 Aligned_cols=74 Identities=12% Similarity=0.328 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++.||| -..+|.+++..|.++|..|++++.. +.++.+.+++ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 6678999999999999999999742 2356666777 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 24578999999998654
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.034 Score=54.36 Aligned_cols=74 Identities=15% Similarity=0.318 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.++|..|++++.. +.++++..++ +|+||.++.-+.-
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------------------TQNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEeCCCcCc
Confidence 4799999 6778999999999999999998733 2345666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 22 24578999999999864
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.056 Score=50.28 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=69.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh----hhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~----~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
..+|.|||+|.+|..++++|+..|. +++++|.+.-....+..+. ... +-.-+....+.++.+ .+++-+.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~a~~~~L~~l-Np~v~i~~~ 96 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAEASLERLRAL-NPRVKVSVD 96 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHHHHHHHHHHH-CCCCEEEEE
Confidence 4689999999999999999999998 6899997742222221100 000 000111222223332 256666555
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+.. +.+...+ .+..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 97 ~~~--~~~~~~~---~~~~~dvVi~~~~~-~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 97 TDD--ISEKPEE---FFSQFDVVVATELS-RAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred ecC--ccccHHH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 432 1111122 23345788887543 4444556677778888888877654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.045 Score=51.58 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=62.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.......+-.-+....+.++.+. +++-+.+.+..-
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~~~~~i 106 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEAHNEKI 106 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEEEeeec
Confidence 3579999999999999999999998 59999988321111111100000000000111122222211 344444443221
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~v~~p 133 (474)
....+. ..+..-++||+++-.. .....+.+.+... ++.++.+.
T Consensus 107 -~~~~~~---~~~~~~DvVI~a~D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 -DEDNIE---ELFKDCDIVVEAFDNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred -CHHHHH---HHHcCCCEEEECCCCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 111122 2244568999985443 3334455566666 77777653
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.033 Score=54.43 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6678999999999999999988632 2245666666 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 24578999999998754
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=53.53 Aligned_cols=113 Identities=10% Similarity=0.110 Sum_probs=67.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
..|-|+|.|.+|..+++.|.+.|++|.+.|.++ .++..+.+.. -+....+.++..+ .+++|+.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 358899999999999999999999999998763 2332222211 1222233344443 2557999999888764
Q ss_pred hHHHHHHHHHhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.-..++.. ...+.| ..+|+-..+. +..+.++..|...+=.|
T Consensus 315 ~Nl~ivL~-ar~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLA-AKEMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHH-HHHhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 33323222 333444 4566554442 23445566677665444
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.091 Score=54.98 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=69.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH-HHH---HHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec-
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDE---TVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---l~~~~~~~~~~~~~~~--~s~~e~~~~l~~~dvIil~v- 81 (474)
||.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 211 12110 0 12222 23 333344 89888754
Q ss_pred -CCC-hhHHHHH---------HHHH-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 82 -KAG-APVDETI---------KTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 82 -p~~-~~v~~vl---------~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
|+. ..+.... .+++ ..+....|-|..|++.-.++.-+...|+..|..+.-.+..|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 322 1222211 1222 2232234556677777666666677777777665444434433
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.097 Score=55.09 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=65.4
Q ss_pred cEEEEcccHhHHH-HHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEec--CC
Q 011931 9 RIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLV--KA 83 (474)
Q Consensus 9 ~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~v--p~ 83 (474)
+|-|||.|..|.+ +|+.|.+.|++|+++|.++.. .+.+.+.+ +.... ...+.++. +|+||.+- |+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~~---~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLDD---ADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCCC---CCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23333222 33222 12233333 89888753 33
Q ss_pred C-hhHHHHH---------HHHH-hccc-CCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 84 G-APVDETI---------KTLS-AYME-KGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 84 ~-~~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
. ..+.... -+++ ..+. ...|-|..|+++-.++.-+...|+..|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 2 2222221 1222 2222 2345577777776666666777777775
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.026 Score=54.34 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=36.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
++++|.|+| .|.+|+.++..|+++||+|++..|++++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 467899999 59999999999999999999999998876544
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.078 Score=50.37 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=54.9
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|+++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.... .-.. ..++..=+.+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~ 68 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS--------------TGVK---AAAYSIDLSNPE 68 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------CCCc---EEEEEccCCCHH
Confidence 45688887 59999999999999999999999998876655432210 0001 222333333344
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+..+++.+.....+=+++|++...
T Consensus 69 ~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 69 AIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5555566555544444677776543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.076 Score=53.57 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCCCCcCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|++....+.|-|.|. |.+|..++..|++.|++|.+.+|++++.+++.+.... .-.. ..++..
T Consensus 1 ~~~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~--------------~g~~---~~~~~~ 63 (330)
T PRK06139 1 MMGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA--------------LGAE---VLVVPT 63 (330)
T ss_pred CCcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEe
Confidence 444444456777885 8999999999999999999999999887766543210 0001 222333
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+.++++.+++.+.....+=+++|++...
T Consensus 64 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 64 DVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3445556777776665554444778877653
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.1 Score=47.77 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred cEEEEcccHhHHHHH-HHHHHC-----CCcEEEEeCChHHHHHHH---HhhhhcC--CCCccccCCHHHHHhhcCCCcEE
Q 011931 9 RIGLAGLAVMGQNLA-LNIAEK-----GFPISVYNRTTSKVDETV---ERAKKEG--DLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA-~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
||+|||.|..-.+.- ..+... +-++.++|+++++++... +...+.. ..++..+++.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 799999999877633 223222 237899999999877432 2211110 2256778899999988 9999
Q ss_pred EEecCCC
Q 011931 78 IMLVKAG 84 (474)
Q Consensus 78 il~vp~~ 84 (474)
|.++-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998655
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.14 Score=48.78 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.- .....+-.-+....+.++.+. +++-+.+.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEEEecce
Confidence 4589999999999999999999997 78899877432222221100 000000001112222222221 44444455432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. .+-+ .+.+..-++||++... +..-..+.+.+.++++.++.+.+.|
T Consensus 100 i~-~~~~---~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LD-AENA---EELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eC-HHHH---HHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1112 2233456888888664 3444445566677888898877655
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.038 Score=54.08 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=57.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.++|..|++++.. +.++.+..++ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~---------------------T~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------------------TTDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC---------------------CCCHHHHhhh---cCEEEEccCCcCc
Confidence 4799999 6678999999999999999998743 1245555666 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 IT------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CC------HHHcCCCcEEEEecccc
Confidence 32 24578999999998754
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.042 Score=54.77 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=54.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+|+||+||| .|..|..+.+.|.++.+ ++.....+..+ .. .+.++..+. +|++|+|+|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 467999999 89999999999988753 33322222111 01 122333344 8999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+ ...++..++. ..|..|||.|+-.
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 6 4444444443 4689999999754
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.04 Score=53.87 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.||| -..+|.++|..|.++|..|+++.... .++++..++ +|+||.++.-+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 56789999999999999999887431 245666666 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 23578999999998754
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=50.76 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=77.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+.++.+|.++|.+....+..++|++.+.++ +++|.+++.+..+.+ ..+|+.++...+.+... +. ++
T Consensus 162 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~ 228 (291)
T TIGR01505 162 NGDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KP 228 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CC
Confidence 4677889999999999999999999999774 359999999999876 45777776653333222 11 12
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 430 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~ 430 (474)
.|.- .-....++.+...|-+.|+|.|.+.++..+|...
T Consensus 229 ~f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 229 GFRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred Ccch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 2222 2234566888999999999999999999877643
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.04 Score=54.01 Aligned_cols=74 Identities=11% Similarity=0.271 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.||| -..+|.++|..|.++|..|++++.. +.++.+.+++ +|+||.++..+.-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------------------t~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------------------TKNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------------------chhHHHHHHh---CCEEEEecCCCCc
Confidence 4799999 7789999999999999999998632 1245666676 9999999987642
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 23578999999998754
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.14 Score=53.91 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=67.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~~--~s~~e~~~~l~~~dvIil~v- 81 (474)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+... ++... ....+.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~-----gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFD-----GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccC-----CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 357999999999999999999999999999976542 333322100 12221 112233344 89998865
Q ss_pred -CCC-hhHHHHHH---------HHH-hccc---CCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 82 -KAG-APVDETIK---------TLS-AYME---KGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 -p~~-~~v~~vl~---------~l~-~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|+. ..+....+ +++ ..+. ...|-|..|++.-.++.-+...|...|...
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 222 22222211 122 2221 123556677777656666667777777653
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.047 Score=52.50 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=71.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|+|+|.+|+.+|.+|+..|. +++++|.+.-....+..+.-. ....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK 102 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 3579999999999999999999997 788999875433333221100 0000000111122223222 156666665532
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ..- +.+.+..-++|||++-.. .....+.+.+.+.++.|+.+.+.|
T Consensus 103 i~-~~~---~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LD-DAE---LAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CC-HHH---HHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 111 223345678999988664 444445566677888888766554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.042 Score=54.13 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=57.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+||..|.++|..|++++.. +.++++.+++ +|+||.++.-+.-
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 5678999999999999999999642 2356677777 9999999976532
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 24578999999998764
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.042 Score=54.03 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=58.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.++|..|++++.. +.++.+..++ +|+||.++.-+.-
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~---------------------T~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA---------------------TRDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6678999999999999999998743 2246666677 9999999987753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 24578999999998754
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=50.65 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=74.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHH-HHH-HHHhhCCCCCCCc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLD-RIK-KAYDRNADLANLL 387 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~-~~~-~~~~~~~~l~~ll 387 (474)
+.++++.+|.+.|.+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+. ... .++.++.
T Consensus 163 ~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------ 229 (296)
T PRK15461 163 GPGMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL------ 229 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC------
Confidence 457888999999999999999999999998853 399999999988663 2333332 222 1222211
Q ss_pred cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 388 VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
++.| .++-...+++-+.+.|-+.|+|.|....+...|..
T Consensus 230 -~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 230 -SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred -CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1233 23344667799999999999999999999886654
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.049 Score=53.36 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=57.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+++.||| -..+|.+++..|.+ ++..|+++... +.++++..++ +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 4799999 67889999999998 68899988743 2356667777 99999999876
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.-+. ...+++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4322 24578999999998764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.11 Score=49.23 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=35.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+++|-|.| .|.+|..++..|+++|++|.+.+|++++.+.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 47 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAA 47 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence 35788998 6999999999999999999999999877655443
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.042 Score=53.65 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=56.9
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||-+ ..|.++|..|...|..|++++++.. ++++.++. +|+||.+++-+.-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 479999988 9999999999999999999986532 34455566 9999999975422
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. . ..+++|.+|||.+...
T Consensus 209 v~---~---~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVGINQ 227 (279)
T ss_pred cC---H---HHcCCCcEEEEeeccc
Confidence 21 2 2368999999998753
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.049 Score=55.38 Aligned_cols=97 Identities=11% Similarity=0.251 Sum_probs=58.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHh-hhh------cCC-CCccc-cCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER-AKK------EGD-LPLFG-FRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-~~~------~~~-~~~~~-~~s~~e~~~~l~~~d 75 (474)
|+||+|+| .|.+|+.+.+.|.++.. ++..+.++++...+.... ... .+. ..+.. ..+++++ .. +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 57999998 89999999999987654 888775565433221110 000 000 00111 1234433 44 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+.|+|.+ ....+.+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999986 3344443332 4688899998754
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=49.36 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=34.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
|+|-|+| .|.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5688898 699999999999999999999999988766554
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.087 Score=52.90 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=30.0
Q ss_pred EEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHH
Q 011931 10 IGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVE 48 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~ 48 (474)
|||+|+|.+|+.+++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56666 56777776555554
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.052 Score=53.25 Aligned_cols=74 Identities=11% Similarity=0.290 Sum_probs=57.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++.||| -..+|.+++..|.++|..|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 4699999 5678999999999999999988732 2246666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 32 24578999999998653
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.095 Score=51.46 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|-+|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+...++.+.++. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3579999999999999999999997 78899877433332322110 000000011112233333322 33334444322
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ++-+.++ +..-++|||++.... ..-..+.+.+..+++.++.+.+.|
T Consensus 106 l~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cC-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11 1112222 335689999886542 333344556677889888876554
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.43 Score=51.38 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=50.1
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----cCC---CCcc--c--cCCHHHHHhhcCCCc
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----EGD---LPLF--G--FRDPESFVNSIQKPR 75 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~~~---~~~~--~--~~s~~e~~~~l~~~d 75 (474)
.|.|.| .|.+|..+++.|++.|++|.+++|+.++.+.+.+.... .+. .++. . ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 477887 59999999999999999999999999887765442110 000 0011 1 123444444456699
Q ss_pred EEEEecCC
Q 011931 76 VIIMLVKA 83 (474)
Q Consensus 76 vIil~vp~ 83 (474)
+||.+...
T Consensus 162 iVVn~AG~ 169 (576)
T PLN03209 162 VVICCIGA 169 (576)
T ss_pred EEEEcccc
Confidence 99988743
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.13 Score=49.50 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+.-. ....+-.-+....+.+..+. +++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4589999999999999999999997 788998774332222211100 00000011112222222221 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. +.- +...+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 111 i~-~~~---~~~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 111 LD-DDE---LAALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred CC-HHH---HHHHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 11 111 222344668999987643 333335556667788888765543
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.058 Score=52.72 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=57.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.+++..|.+++..|++++.. +.++++..++ +|+||.++.-+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6678999999999999999998642 2345666676 9999999986543
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 24578999999998764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.046 Score=54.92 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 41 (474)
||+|||+ |.+|..+|..|+..|. ++.++|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6999999 9999999999997654 5999999654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.053 Score=54.95 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCC-CcEEEE-eCChHHHHHHHHhhhh-----cCC--CCccccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRTTSKVDETVERAKK-----EGD--LPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~~-----~~~--~~~~~~~s~~e~~~~l~~~dvI 77 (474)
+||+|+| .|.||..+++.|.++. ++|... +++++..+.+.+.... ... ..+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 5899999 5999999999998876 577655 6544322222211100 000 00011111112223 39999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++|+|.+ ....+...+ ...|..|||.|...
T Consensus 78 f~a~p~~-~s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHH---HHCCCEEEECChhh
Confidence 9999987 333343333 34688899998763
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.17 Score=52.05 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=67.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|..|+.++.+|+..|. +++++|++.-....+..+.- .....+..-+....+.+..+. +++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3579999999999999999999998 79999987422222211100 000000001111222222221 34444444332
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ...+.+ .+..-++|||++.... .-..+.+.+.+.++.++.+.+.|
T Consensus 214 ~~-~~~~~~---~~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 VT-SDNVEA---LLQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred CC-hHHHHH---HHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 11 112222 2345689999887642 22234556677889888876654
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=52.98 Aligned_cols=119 Identities=9% Similarity=0.096 Sum_probs=64.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh-h----hcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-K----KEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~-~----~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
..+|+|||+|-.|+.++..|++.|. +++++|.+.=....+..+. . ..|. ...-+...++.+..+. +++. +
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk-~~~KVevaa~rl~~in-~~I~--~ 251 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELRE-APKKVDYFKSRYSNMR-RGIV--P 251 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCC-cchHHHHHHHHHHHhC-CeEE--E
Confidence 3589999999999999999999997 7889987632111111110 0 0000 0001111222233221 3443 3
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
.+..- -.+.+ ..+..-++|++|.-... .-..+.+.+...++.|+++++.
T Consensus 252 ~~~~I-~~~n~----~~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 252 HPEYI-DEDNV----DELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred EeecC-CHHHH----HHhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 33211 11112 23445688888877542 2223455667788999987643
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=49.58 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++....... -.. ..++..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--------------GGK---AIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 3688888 799999999999999999999999988776655432100 001 2233333444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+-++||+++.
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555555567777654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.13 Score=48.60 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|+| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 4688887 5999999999999999999999999887766544
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.16 Score=49.35 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=53.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|++.|++|.+.+|++++++++... . ...+..-+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--------------------~---~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--------------------G---VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--------------------C---CeEEEeeCCCHHH
Confidence 4688888 59999999999999999999999998776544321 1 2333334444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666655544344666666543
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.21 Score=50.96 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=69.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.=....+..+.-. ....+-.-+....+.+..+. +++-+.+.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCcEEEEEEee
Confidence 3589999999999999999999997 788999875222222111000 00000001111222222221 56666665543
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-..+. ..+.+..-++|||++-.. ..-..+...+.+.++.|+.+.+.|
T Consensus 107 i~~~~----~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LTWSN----ALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cCHHH----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 21111 222345678999998654 222234455567788888876655
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.17 Score=52.63 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEE--------Ee---CChHHHHHHHHhhhhcC--------CC-CccccCCHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YN---RTTSKVDETVERAKKEG--------DL-PLFGFRDPESF 67 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~~~~~~--------~~-~~~~~~s~~e~ 67 (474)
.+|+|=|.|++|...|+.|.+.|.+|++ || .+.++++.+.+.....+ .+ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5799999999999999999999999998 88 67766543432211100 00 01111 22333
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
... +||+.+-|--...-..+..+.|.. ..-.+|+..+|. | .+.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~--~~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIK--NGVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHH--cCCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 221 388887765443222222233321 134688888888 4 445667788999998875
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.093 Score=52.40 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=73.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--------CCcE--E-EEeCChHHHHHHHHhhhhcCCCC-ccccCCH-----HHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--------GFPI--S-VYNRTTSKVDETVERAKKEGDLP-LFGFRDP-----ESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--------G~~V--~-v~dr~~~~~~~l~~~~~~~~~~~-~~~~~s~-----~e~~ 68 (474)
+.++|+|+|+|.+|+.+++.|.++ |.++ . +.||+......+. .. + ....++. .+++
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLD--LL-----NAEVWTTDGALSLGDEVL 74 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccccc--cc-----chhhheecccccccHhhh
Confidence 456899999999999999999875 3333 3 5577665443110 00 0 0112222 3443
Q ss_pred hhcCCCcEEEEecCC-ChhHHHHHHHHHhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCe-EEecCCCCCcc
Q 011931 69 NSIQKPRVIIMLVKA-GAPVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLL-YLGMGVSGGEE 139 (474)
Q Consensus 69 ~~l~~~dvIil~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~-~v~~pvsgg~~ 139 (474)
.. ...|+|+-+++. -...+. ++.+...++.|..||......-.. -.++.+..++.|.. +..+.|.||-+
T Consensus 75 ~~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 75 LD-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cc-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 32 346899998887 444555 667777888999887554432111 11344444555654 44677766643
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=49.24 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=36.3
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+.++|-|+| .|.+|..++..|+++|++|++.+|+++..+++.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345788997 6999999999999999999999999876665543
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.031 Score=56.53 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=56.0
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil~vp~ 83 (474)
||+||| .|..|..|.+.|.+++|++. .+.++.+.-+.+.-.+. .+...+ +..++ +. +|+||+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 689999 99999999999999888643 34444332222221111 122211 22333 44 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ........+ +..|..|||.|+..
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHHH
Confidence 6 444444433 34688999998743
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.1 Score=52.77 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=33.7
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDET 46 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 46 (474)
||+|-|.|+ |.+|+.++..|+++ |++|.+.||+.++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 568999996 99999999999986 79999999987654443
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.2 Score=49.20 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=81.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHH-HHHhhCCCCCCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIK-KAYDRNADLANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~-~~~~~~~~l~~ll~ 388 (474)
+.+.|+.+|+++|=+-...++.++|.+.+-+++ + +|.+.+.++-++|. -+|+.++.-. ..++++.
T Consensus 163 ~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~----G--ld~~~~~~vi~~~~-~~s~~~e~~~~~m~~~~~------- 228 (286)
T COG2084 163 PVGAGQAAKLANNILLAGNIAALAEALALAEKA----G--LDPDVVLEVISGGA-AGSWILENYGPRMLEGDF------- 228 (286)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhccc-cCChHHHhhcchhhcCCC-------
Confidence 458899999999999999999999999997764 3 99999999998873 5788877632 2333321
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 430 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~ 430 (474)
+|-|.- +-...+++-+...|.+.|+|+|..+.+.+.|+..
T Consensus 229 ~p~F~v--~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~ 268 (286)
T COG2084 229 SPGFAV--DLMLKDLGLALDAAKELGAPLPLTALAAELYAKA 268 (286)
T ss_pred CcchhH--HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 233332 3456677889999999999999999999877643
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.065 Score=53.68 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---------------------T~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---------------------TKDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4699999 6678999999999999999988632 2245666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 32 24578999999998754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.22 Score=47.80 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=35.0
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.++|-|+|. |.+|..+++.|+++|++|.+.+|++++.+...
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 357889986 99999999999999999999999987665544
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.067 Score=53.85 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.||| -..+|.++|..|.+++..|+++... +.++.+..++ +|+||.++.-+.-
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4699999 6778999999999999999998632 2356666777 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 32 24578999999998654
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.15 Score=50.40 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=75.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCC-CCCc-
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADL-ANLL- 387 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l-~~ll- 387 (474)
+.++++.+|.++|.+.++.++.++|++.+.++ .++|...+.++.+.+. -+|+.++.... .+.. .+.+
T Consensus 158 ~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~ 226 (288)
T TIGR01692 158 DHGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPA 226 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCC----Cccccccccc
Confidence 35788999999999999999999999999775 3499999999998763 45665442211 0000 0000
Q ss_pred ---cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 388 ---VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 388 ---~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
.++-|. +.-...+++.+...|-+.|+|+|....+...|..
T Consensus 227 ~~~~~~~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 269 (288)
T TIGR01692 227 SNGYQGGFG--TALMLKDLGLAQDAAKSAGAPTPLGALARQLYSL 269 (288)
T ss_pred cCCCCCCcc--hHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 012222 2234567789999999999999999988886654
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.16 Score=51.30 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=57.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ...+..=+.+..
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~--------------~g~~---~~~v~~Dv~d~~ 70 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA--------------AGGE---ALAVVADVADAE 70 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------cCCc---EEEEEecCCCHH
Confidence 34577777 59999999999999999999999998877665543210 0000 122223334445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+...+.+=+++|++...
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCc
Confidence 6666766666655555778876654
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.35 Score=45.41 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||.|..|..=++.|++.|-+|+++..+. +.+..+.+.+... -+...-..+++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 479999999999999999999999999998776 5555555443210 011112233333 389999999886 4
Q ss_pred HHHHH
Q 011931 87 VDETI 91 (474)
Q Consensus 87 v~~vl 91 (474)
+..-+
T Consensus 85 ln~~i 89 (210)
T COG1648 85 LNERI 89 (210)
T ss_pred HHHHH
Confidence 55444
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.031 Score=56.32 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEe
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~ 80 (474)
..++|+||| .|..|..|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. .. +|++|+|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~~~~---~Dvvf~a 73 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFDWSQ---AQLAFFV 73 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhhccC---CCEEEEC
Confidence 346899999 59999999999998644 45544332221111110010 12222 334332 34 8999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|.+ ....+...+. ..|..|||.|+..
T Consensus 74 ~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 74 AGRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CCHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 9986 4444444432 4689999999754
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.077 Score=52.01 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=56.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++.||| -..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 567899999999988 6788887632 2356666676 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 764322 24578999999998754
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.18 Score=53.32 Aligned_cols=117 Identities=13% Similarity=0.199 Sum_probs=75.2
Q ss_pred cCcEEEEcc----------cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh--------h------cCC-CCcccc
Q 011931 7 LTRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK--------K------EGD-LPLFGF 61 (474)
Q Consensus 7 ~~~IgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~--------~------~~~-~~~~~~ 61 (474)
-.+|+|+|+ ..-...++..|.+.|.+|.+||.--+..+.-...+. . ... .++..+
T Consensus 324 ~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
T PLN02353 324 GKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVV 403 (473)
T ss_pred CCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeee
Confidence 358999998 457788999999999999999986432211000000 0 000 013455
Q ss_pred CCHHHHHhhcCCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 62 RDPESFVNSIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 62 ~s~~e~~~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.++.++++. +|+||+++..+ ..+.. +..+.+.+.+..+|+|+-+.... +.+++.|+.|++.+
T Consensus 404 ~~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 404 WDAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CCHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 666777776 99999999986 44432 34555556555689999888742 22335588887654
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.095 Score=50.17 Aligned_cols=117 Identities=9% Similarity=0.072 Sum_probs=80.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
..-..++|.|...-.......+.- .+|.+|+|+++..+.+++...+.- ...+..+.+.++++.. +|+|+.|
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~a 214 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGA 214 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEec
Confidence 345789999999988776665542 489999999999888887433210 0024567788888887 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
++.... .+ ....++||+.|=-.++.. ....+....+-..+..|||.
T Consensus 215 tlsteP---il--fgewlkpgthIdlVGsf~-p~mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 215 TLSTEP---IL--FGEWLKPGTHIDLVGSFK-PVMHECDDELIQSACVFVDS 260 (333)
T ss_pred cccCCc---ee--eeeeecCCceEeeeccCC-chHHHHhHHHhhhheEEEec
Confidence 987543 22 124577886554344444 46666666666677888886
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.27 Score=44.87 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=34.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
|++.|+|...||..++..|++.|++|.+.+|++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 5688998767888899999999999999999988766554
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.054 Score=54.72 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHH-CCCc---EEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAG-LAVMGQNLALNIAE-KGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~-~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v 81 (474)
+|||||| .|..|..|.+.|.+ ..++ +..+......-+.+.-.+. .+... .+++++ .. .|++|+|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-----~l~v~~~~~~~~-~~---~Divf~a~ 76 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-----EIIIQEAKINSF-EG---VDIAFFSA 76 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-----ceEEEeCCHHHh-cC---CCEEEECC
Confidence 5899999 59999999999995 5667 5444432221111100010 12221 234444 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.+ ....+...+ ...|..|||.|+..
T Consensus 77 ~~~-~s~~~~~~~---~~~G~~VID~Ss~f 102 (347)
T PRK06728 77 GGE-VSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred ChH-HHHHHHHHH---HHCCCEEEECchhh
Confidence 986 445454443 34689999999864
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.54 Score=45.95 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=58.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc---CCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI---QKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l---~~~dvIil~vp~ 83 (474)
.+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.+... +....+..+.+..+ ...|++|-++..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 4699999999999999888888987 888899988877665544311 11111122222221 237899988865
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+..++. ....++++..++..+.
T Consensus 198 ~~~~~~----~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRA----CLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHH----HHHHhcCCCEEEEecc
Confidence 433333 3445556666666554
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.18 Score=48.06 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... ... ...+..-+.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 69 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPDS 69 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 46888885 99999999999999999999999987665544322100 001 1222333344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.++..+.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665555445788887764
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.32 Score=51.01 Aligned_cols=115 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--C
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p 82 (474)
..+|.|+|+|..|.+.++.|++.|++|+++|..+.. .+.+ +.+. .+.......+.++. +|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2223 2121 11111122233444 78766644 2
Q ss_pred CC-hhHHHHHH---------HHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AG-APVDETIK---------TLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~-~~v~~vl~---------~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+. ..+....+ ++...+... .|-|-.|++.-.++.-+...|...|..+.
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 21 12222211 233222222 34466777776666666677777665443
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.088 Score=52.25 Aligned_cols=81 Identities=14% Similarity=0.302 Sum_probs=53.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.||+|+| .|..|.-|.+.|..+. +|-+.....++. + . ..+.+++.++ +|++|+|+|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 4799998 8999999999999874 333332221110 0 0 1134455555 99999999987 4
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+....+ ...|..|||.|+..
T Consensus 62 s~~~~~~~---~~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLV---DNPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHH---HhCCCEEEECChHH
Confidence 44444443 24688999999754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.19 Score=48.98 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 4588887 6999999999999999999999999887665543210 01 2223333444445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...++++.....+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 555666555544444677776554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.25 Score=47.73 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=34.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677777 5999999999999999999999999877666543
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.03 Score=57.99 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=31.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.25 Score=47.33 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=53.1
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|+|. |.+|..++..|+++|++|++.+|++++.+.+.+.... .. ...+-.-+.+...+
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~~ 64 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAASL 64 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHHH
Confidence 5778875 8999999999999999999999998877665542210 01 22333334444445
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...++++.....+=+.||++...
T Consensus 65 ~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 65 AAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55555554444334666666543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=50.55 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcC--CCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEG--DLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~-~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|.|||.|.+-.....-.... |..|..+|++++..+...+-..... +.++.. +.+..++...+..+|+|+++.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999987655444333 4578899999987665433211000 002222 2344444444556999999876
Q ss_pred CC---hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 83 AG---APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~---~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+ ..-..+++.+...+++|..|+--+..
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 54 24567889999999999998877543
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.24 Score=56.24 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=65.6
Q ss_pred CcEEEEcccHhHHHH-HHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec--C
Q 011931 8 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v--p 82 (474)
.+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+- |
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~~---~d~vV~SpgI~ 74 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVPE---DAVVVYSSSIS 74 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcCC---CCEEEECCCcC
Confidence 469999999999997 9999999999999997643 333443322 2222 112233344 89888653 3
Q ss_pred CC-hhHHHHH---------HHHHhcccC--CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 83 AG-APVDETI---------KTLSAYMEK--GDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 83 ~~-~~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.. ..+.... -+++..+.+ ..|-|..|+++-.++.-+...|...|.
T Consensus 75 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 75 KDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 22 2222221 123222222 245577777776666666677777664
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.19 Score=49.03 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
++|-|.|. |.+|..+|+.|++.|++|.+.+|++++.+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 35778886 99999999999999999999999988766543
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.092 Score=52.40 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=64.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
++-|.|.|..|+..|.++...|.+|.+++.+|-+.-+..=.| +. ..+.+|++.. +|++|.++-...
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnkd--- 276 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNKD--- 276 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCcC---
Confidence 477889999999999999999999999999987655444322 33 3367888887 999999987642
Q ss_pred HHH-HHHHhcccCCCEEEecCC
Q 011931 89 ETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 89 ~vl-~~l~~~l~~g~iiId~st 109 (474)
|+ .+-...++.|.|+.+.+.
T Consensus 277 -Vi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 277 -VIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred -ccCHHHHHhccCCeEEecccc
Confidence 33 233445788888887764
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.28 Score=51.26 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=51.1
Q ss_pred CcEEEEcccHh-HHHHHHHHHHC-----CCcEEEEeCChHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|||+|||.|.. ...+...|+.. +-+|.++|.++++.+... +..... + ..++..+++.+++++. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 68999999984 22355556543 358999999998766432 211111 0 1257788899999888 999
Q ss_pred EEEecCCC
Q 011931 77 IIMLVKAG 84 (474)
Q Consensus 77 Iil~vp~~ 84 (474)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998665
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.24 Score=48.09 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=52.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+... . .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--------------------G---FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------------------C---CeEEEeeCCCHHH
Confidence 4577777 68999999999999999999999998765544321 1 2223233344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.+...+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444677776653
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.2 Score=48.22 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|....+.+++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.... . ... .+..++..
T Consensus 1 ~~~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------~------~~~-~~~~~~~~ 65 (260)
T PRK07063 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------D------VAG-ARVLAVPA 65 (260)
T ss_pred CCcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------c------cCC-ceEEEEEc
Confidence 33333334566776 68999999999999999999999998877766543211 0 000 00222333
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
-+.+...++.+++++.....+=+++|++...
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 3444455666666666555455677776543
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.24 Score=51.85 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=50.5
Q ss_pred CcEEEEcccHhHHH--HHHHHHHC-----CCcEEEEeCChHHHHHHHH---hhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011931 8 TRIGLAGLAVMGQN--LALNIAEK-----GFPISVYNRTTSKVDETVE---RAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGlG~mG~~--lA~~L~~~-----G~~V~v~dr~~~~~~~l~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
|||+|||.|.. .. +...|+.. +-+|+++|.++++++.... +.... + ..++..+++.+++++. +|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---AD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---AD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CC
Confidence 69999999985 32 44455533 3589999999987665322 11110 0 2257788899999888 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||.++-.+
T Consensus 77 fVi~~irvG 85 (437)
T cd05298 77 FVFAQIRVG 85 (437)
T ss_pred EEEEEeeeC
Confidence 999998665
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=51.36 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|.||| -..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 4799999 678899999999988 6788887532 2246666676 999999997
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 664322 24578999999998654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.31 Score=47.01 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=71.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.-||+|. | .++..+++.|.. |+++|.++..++...+..... ++. +..++...-...|+|+..... ..
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~~---~~~~~~~~~~~fD~Vvani~~-~~ 191 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GVE---LNVYLPQGDLKADVIVANILA-NP 191 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CCC---ceEEEccCCCCcCEEEEcCcH-HH
Confidence 4788999998 6 455566777775 999999999887666543322 110 000010000027988876544 35
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+..++.++...+++|..++-.+.. ......+.+.+...|+..+.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~-~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGIL-EEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc-HhhHHHHHHHHHHCCCEEEE
Confidence 667778888889988777654332 34455666777777876654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.2 Score=48.11 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+++.+... .. . . ...+-+-+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------~~----~---~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--------KA----A---R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------cC----C---e---eEEEEcCCCCHHH
Confidence 4677776 8999999999999999999999999887765543211 00 0 1 3333333444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..++++.....+-+++|+++..
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665554444777776653
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.25 Score=46.94 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
.+|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 3566776 79999999999999999999999999887776543
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.23 Score=47.49 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=34.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
++|-|.|+ |.+|..+++.|+++|++|.+.+|++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 36889997 9999999999999999999999998776544
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.35 Score=51.23 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=64.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HH---HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KV---DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV- 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~---~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v- 81 (474)
..+|+|+|+|.-|.+.++.|.+.|.+|+++|.++. .. .++.+.+. .+....+ .+.... +|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~~~~~---~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL-----LVETEAS-AQRLAA---FDVVVKSPG 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE-----EEeCCCC-hHHccC---CCEEEECCC
Confidence 35799999999999999999999999999995432 11 23322110 0111222 333444 89988754
Q ss_pred -CCCh-hHHHHH---------HHH-Hhc-cc-----CCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 82 -KAGA-PVDETI---------KTL-SAY-ME-----KGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 82 -p~~~-~v~~vl---------~~l-~~~-l~-----~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
|+.. .+.... -++ ... .. ...|-|..|++.-.++.-+...|...|..
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~ 143 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHR 143 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCc
Confidence 3322 222211 122 111 21 13455667777766666666777766643
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.28 Score=47.05 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|.| .|.+|..+++.|+++|++|.+.+|+.++.+++.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3577887 6999999999999999999999999887766544
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.27 Score=51.25 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=50.0
Q ss_pred CcEEEEcccHhHH-HHHHHHHHC-----CCcEEEEeCC-hHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011931 8 TRIGLAGLAVMGQ-NLALNIAEK-----GFPISVYNRT-TSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGlG~mG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~l~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
|||+|||.|..-. .+...|+.. +-+|..+|++ +++++... +..... + ...+..+++.+++++. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 6899999999744 345555542 3589999999 78765422 111110 0 1246778889999887 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||++.-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988544
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.23 Score=47.43 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=35.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
.++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 35688887 5899999999999999999999999887665544
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.33 Score=46.74 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 3566776 5789999999999999999999999887766543210 01 2223333344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544445677776653
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.21 Score=47.98 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=29.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-----------CcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-----------FPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 40 (474)
..+|.|||+|..|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 358999999999999999999864 2889999764
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.2 Score=48.21 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.++..+..... .. ...+-.-+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 4788887 588999999999999999999999988776654432100 01 2222223344455
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666555544567776554
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.27 Score=47.42 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..++-|+|.|..+.++++.+...||+|+++|..++......-... .......+++....+...+.|++++-+...
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h~~ 174 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDHAL 174 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCChHH
Confidence 357999999999999999999999999999977652211100000 012233456665545456888888866532
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
=..++..+++.. +-..|=-.++- ....++.+.|.+.|+
T Consensus 175 D~~~L~~aL~~~-~~~YIG~lGSr--~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 175 DLELCHAALRRG-DFAYFGLIGSK--TKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHhCC-CCcEEEEeCCH--HHHHHHHHHHHhcCC
Confidence 224445544211 22233333332 345556666666554
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=50.34 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=58.3
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||-++ +|.+|+..|...++.|++++... .++.+..++ +|+++.++.-+.-
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 4699999665 69999999999999999998542 345566666 9999999977643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ .+.+++|.+|||.+...
T Consensus 213 i~------~d~vk~gavVIDVGinr 231 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred cc------cccccCCCEEEecCCcc
Confidence 33 35688999999998864
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=50.92 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=56.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++|.||| -..+|.+++..|.++ +..|+++... +.++.+..++ +|+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------------------SKNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 667899999999988 4688887632 2245666676 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 775332 24578999999998764
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.24 Score=51.29 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=51.7
Q ss_pred CcCcEEEEcccHhHHHH-HHHHHHC-----CCcEEEEeCChHHHHHH---HHhhhh-cC-CCCccccCCHHHHHhhcCCC
Q 011931 6 QLTRIGLAGLAVMGQNL-ALNIAEK-----GFPISVYNRTTSKVDET---VERAKK-EG-DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~l-A~~L~~~-----G~~V~v~dr~~~~~~~l---~~~~~~-~~-~~~~~~~~s~~e~~~~l~~~ 74 (474)
++.||+|||.|+.+.+. ...++.. +.++.++|.++++.+.. .+.... .+ ..++..++|.+++++. +
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g---A 78 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG---A 78 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---C
Confidence 35689999999998773 3333332 45889999999886622 111111 00 1256778899999888 9
Q ss_pred cEEEEecCCC
Q 011931 75 RVIIMLVKAG 84 (474)
Q Consensus 75 dvIil~vp~~ 84 (474)
|+|+.++-.+
T Consensus 79 dfVi~~~rvG 88 (442)
T COG1486 79 DFVITQIRVG 88 (442)
T ss_pred CEEEEEEeeC
Confidence 9999998554
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.22 Score=47.71 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|..|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCHHH
Confidence 4677887 689999999999999999999999987766554432100 001 2233333444456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.+...+=++||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 666666665555445677776643
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.17 Score=57.35 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=72.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+.. .....+-.-+...++.+..+. +++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN-P~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN-PFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC-CCCeEEEEecC
Confidence 4589999999999999999999997 77888866432222222110 000000111122333333332 56666666543
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~v~~pvsg 136 (474)
..++.++++ +..-++|||+......+. ..+...+.+.++.++.+.+.|
T Consensus 411 -I~~en~~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 -VAAETIDAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CCHHHHHHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 222333333 345589999887654333 344455667889998877654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=50.38 Aligned_cols=108 Identities=16% Similarity=0.049 Sum_probs=72.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~- 86 (474)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++++. +|+|++.+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 479999998888999999999999999876543211 011 25566677887777 9999999886311
Q ss_pred --HHHH-------H-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 87 --VDET-------I-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 87 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
+... + .+.+..++++.+++ .+...|. +.+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEEEe
Confidence 1111 1 34667788998555 4555443 2244568899887643
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.18 Score=51.81 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCcCcEEEE----c-ccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 5 KQLTRIGLA----G-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 5 ~~~~~IgiI----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
.++++|.|+ | .|.+|..++..|+++||+|++.+|++..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 345789999 6 6999999999999999999999998765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.2 Score=50.97 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=59.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccC---CHHHHHhhc---CCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFR---DPESFVNSI---QKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~---s~~e~~~~l---~~~dvIil~v 81 (474)
++.|+|+|.+|...+..+...|. +|++.|+++++++...+.+... ..... ...+.+..+ ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998877777885 7778899999998776644211 11111 111112111 2379999998
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.... .+.+....++++-.|+..+...
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEeccC
Confidence 7543 3444455566666666555543
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.25 Score=47.95 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=58.4
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++++-|-| .+-+|..+|+.|+++|++|.+..|+.++++++.++.... . . ++ ++++-+=+.++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~-----~---~----v~----v~vi~~DLs~~~ 69 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK-----T---G----VE----VEVIPADLSDPE 69 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh-----h---C----ce----EEEEECcCCChh
Confidence 34566777 789999999999999999999999999999988765321 0 0 11 344444444555
Q ss_pred hHHHHHHHHHhcccCCCEEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.+..+.+++.....+=+++|+..
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEECC
Confidence 66666666665433345666644
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.22 Score=49.24 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|..|+++|++|.+.+|++++.+++.+.... .-.. ..++-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--------------~~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--------------AGGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4577777 59999999999999999999999998877766543210 0000 2223233334455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555455777776543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.26 Score=47.15 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=55.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.++|-|+| .|.+|..+++.|+++|++|++++|+++..+++.+..... -.. .+.+..-+.+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 73 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--------------GGA---AEALAFDIADEE 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEccCCCHH
Confidence 35677776 689999999999999999999999987766554432100 001 223333344445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+..+++++.....+=+.+|.+...
T Consensus 74 ~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 74 AVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5666666665544444566665543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.25 Score=47.36 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--------------QGLS---AHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCce---EEEEEccCCCHHH
Confidence 4688887 59999999999999999999999998776655432210 0000 2222223334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++...+.+=++||++...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 566666555544455667766543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.17 Score=47.98 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=35.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+++.|.|. |.+|..++..|+++|++|++.+|++++.+++.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889986 899999999999999999999999887766554
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.34 Score=46.58 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=36.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
|+++-|+| .|.+|..+++.|++.|++|.+.+|++++.+++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 34588887 7999999999999999999999999988776654
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.059 Score=54.10 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=47.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cC---CHHHHHhhcCCCcEE---EE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FR---DPESFVNSIQKPRVI---IM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~---s~~e~~~~l~~~dvI---il 79 (474)
|++|||||-|..|+.|+..-.+-|++|.+.|.+++.-....... .+.. ++ .+.++++. ||+| |.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~------~i~~~~dD~~al~ela~~---~DViT~EfE 71 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADR------VIVAAYDDPEALRELAAK---CDVITYEFE 71 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccc------eeecCCCCHHHHHHHHhh---CCEEEEeec
Confidence 46899999999999999999999999999998876533322211 0222 23 35566666 9988 34
Q ss_pred ecCC
Q 011931 80 LVKA 83 (474)
Q Consensus 80 ~vp~ 83 (474)
-||.
T Consensus 72 ~V~~ 75 (375)
T COG0026 72 NVPA 75 (375)
T ss_pred cCCH
Confidence 4554
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.21 Score=51.02 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=66.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH------------------HHHHHHHhhhhcCCCCccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS------------------KVDETVERAKKEGDLPLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~------------------~~~~l~~~~~~~~~~~~~~~~s~~e~~ 68 (474)
-.+|+|=|.|++|..+|+.|.+.|.+|++++-+.. +..++.+.. +.+..+. +++.
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~------ga~~i~~-~e~~ 279 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYA------GAEYITN-EELL 279 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhc------CceEccc-cccc
Confidence 35899999999999999999999999988865544 111111110 1222222 3333
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.. .||+.+-|--.. ++ ..-++.|.. ++|+...|.+ ++.+..+.+.++|+-|+.
T Consensus 280 ~~--~cDIl~PcA~~n-----~I~~~na~~l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 280 EV--DCDILIPCALEN-----VITEDNADQLKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred cc--cCcEEccccccc-----ccchhhHHHhhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 21 388877654433 33 222333433 3888888875 445566667789987765
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.15 Score=56.54 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=69.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+| +|+..|..|+..|. +++++|.+.=....+..........+..-+...++.+..+. +++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~in-p~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELD-PYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4589999999 89999999999994 88999876422211111100000000011112233333222 56666666654
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
-. .+.++++. ..-++|||++-.. ..-..+.+.+..+++.+|.+...+|
T Consensus 185 i~-~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 LT-EDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred CC-HHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 22 33344443 3458999998865 2323344555677888887654444
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.044 Score=56.20 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=32.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 57899999999999999999999999999998865
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.25 Score=47.58 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEE--------eCChHHHHHHHHhhhhcCCCCccccC----------CHH-HH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVY--------NRTTSKVDETVERAKKEGDLPLFGFR----------DPE-SF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~--------dr~~~~~~~l~~~~~~~~~~~~~~~~----------s~~-e~ 67 (474)
-+++.|-|.|.+|..+|+.|.+.|..|.+. |.+.-..+++.+.....+. ++.... +.. ++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS-RVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS-HSTTGTHTCSSTSEEECHHCHG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC-cccccccccccceeEecccccc
Confidence 357999999999999999999999877654 6654445555442111110 011111 121 44
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... +||+++-|--...-.++.+.. .+++ -++|+...|.... .+-.+.|.++|+.++.-
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viPD 169 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIPD 169 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-H
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEcc
Confidence 321 499999985444222222220 3332 3688888887643 33344889999988754
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.37 Score=45.50 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
.+|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688887 5889999999999999999999999887766543
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.38 Score=50.81 Aligned_cols=120 Identities=19% Similarity=0.140 Sum_probs=66.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~~ 85 (474)
.+|+|+|+|.-|.+.++.|. .|.+|+++|.+++....+.+.... ......+ .+.... +|+||..- |...
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~---~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIAALS-DSRWQN---LDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceeccCC-hhHhhC---CCEEEECCCCCCCC
Confidence 57999999999999999998 599999999664433222211000 1111112 233344 89887753 3221
Q ss_pred -hHHHHH---------HHHH-hcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 -PVDETI---------KTLS-AYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 -~v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+.... -+++ ..... ..|-|-.|+++-.++.-+...|...|..+.-.+..|
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 222211 1222 22222 234466777776566666677777776554444334
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.3 Score=46.19 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=34.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34677887 779999999999999999999999987765544
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.27 Score=47.03 Aligned_cols=85 Identities=11% Similarity=0.157 Sum_probs=53.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+++...... .... ...+-.-+.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------------DGGK---AIAVKADVSDRDQV 66 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEECCCCCHHHH
Confidence 455665 88999999999999999999999998776665443210 0000 11222223444556
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665554445677776654
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=50.34 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++|.||| -..+|.++|..|.++ +..|+++... +.++++..++ +|+||.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~~l~~~~~~---ADIvIsAvG 213 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------------------TDDLAAKTRR---ADIVVAAAG 213 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 667899999999887 6789987532 2245666676 999999997
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-+.-+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELID------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CcCccC------HHHcCCCCEEEEccccc
Confidence 664322 24578999999998654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.28 Score=46.85 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|..|++.|++|.+.+|++++.+++.+.... ... . .. ..++..-+.+..+
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~-------~~~--~---~~---~~~~~~Dl~d~~~ 69 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGK-------EFK--S---KK---LSLVELDITDQES 69 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHh-------hcC--C---Cc---eeEEEecCCCHHH
Confidence 3577887 58999999999999999999999998877665543210 000 0 00 1223334444455
Q ss_pred HHHHHHHHHhcccCCCEEEecC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~s 108 (474)
+..+++++.....+=+++|++.
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 70 LEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 6666666655444456777765
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.39 Score=43.44 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=31.5
Q ss_pred cEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 9 RIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 9 ~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.+-|.|.+ .+|.+++..|+++|++|.+++++.+..+...
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~ 57 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATV 57 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45666765 5999999999999999999999977655443
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.44 Score=46.17 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=53.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . ..++..=+.+...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------------~---~~~~~~D~~~~~~ 64 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------------------L---VVGGPLDVTDPAS 64 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------------------c---ceEEEccCCCHHH
Confidence 4688887 5999999999999999999999999887766543210 1 2222222334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++.+.....+=+++|++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 65 FAAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444466666544
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.46 Score=44.92 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=55.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+++..... .. ..++-.-+.+..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~ 65 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPANLSDRD 65 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHH
Confidence 45688887 7999999999999999999999999877765543210 01 222222233444
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.+...+=+.||++...
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 66 EVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665555555677776554
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.34 Score=46.85 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.+|-|.|. |.+|..+++.|++.|++|++.+|+++..+...
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 50 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAV 50 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46878875 89999999999999999999999987765543
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.19 Score=51.89 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=68.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.. .....+-.-+....+.+..+. +++-|.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN-PLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC-CCcEEEEEecc
Confidence 3579999999999999999999998 78899977432222221110 000000001111222222222 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-..+. + ...+..-++|||++-.. ..-..+.+.+...++.|+.+.+.|
T Consensus 121 i~~~~-~---~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPSN-A---VELFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChhH-H---HHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11111 1 22344568999987653 333334555667788888776554
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.29 Score=47.21 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ..++-+-+.+...
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~D~~~~~~ 73 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--------------AGRR---AHVVAADLAHPEA 73 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4677777 66899999999999999999999998877665543210 0000 1222233444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++...+.+=++||++..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555544567777654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.38 Score=46.71 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=54.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4577887 7999999999999999999999999877665543210 01 2233333344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.++.++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 556665555444444677776543
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.095 Score=53.35 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=53.9
Q ss_pred cCcEEEEc-ccHhHHHHHH-HHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLAL-NIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~-~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|++||||| .|.+|..|.+ .|.+..++ +..+..+. .......-.... ..+....+.+++ .. +|++|+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCcccccCCCc--ceEEecCChhHh-cC---CCEEEECC
Confidence 47899999 5999999998 55555666 66654331 111111100000 001111223443 44 99999999
Q ss_pred CCChhHHHHHHHHHhcccCC--CEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKG--DCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g--~iiId~st~~ 111 (474)
|.+ ....+...+. ..| .+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 GGD-YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred CHH-HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 875 4455544443 357 5799998754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.46 Score=45.96 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=36.2
Q ss_pred CCCCCCcCc-EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 1 MVEGKQLTR-IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 1 m~~~~~~~~-IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
|++-....| +-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE 50 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 444333334 45556 5789999999999999999999999887766554
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.65 Score=43.96 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=51.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCcccc---CCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGF---RDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~---~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|-|||.|.++..=+..|++.|.+|+++.... +.+..+.+.+ +++.. -...++ +. +++||.|+.+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~------~i~~~~r~~~~~dl-~g---~~LViaATdD 95 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYG------NLKLIKGNYDKEFI-KD---KHLIVIATDD 95 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCC------CEEEEeCCCChHHh-CC---CcEEEECCCC
Confidence 479999999999999999999999999997653 2344444332 12221 123333 33 8999999876
Q ss_pred ChhHHHHHHHHH
Q 011931 84 GAPVDETIKTLS 95 (474)
Q Consensus 84 ~~~v~~vl~~l~ 95 (474)
. .+..-+....
T Consensus 96 ~-~vN~~I~~~a 106 (223)
T PRK05562 96 E-KLNNKIRKHC 106 (223)
T ss_pred H-HHHHHHHHHH
Confidence 5 5665554443
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.082 Score=41.27 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.071 Score=40.47 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=27.3
Q ss_pred EEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|||.|.-|...|..|+++|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
|
... |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.38 Score=45.94 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=79.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+.+..+. +++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in-P~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN-PECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC-CCcEEEEeeee
Confidence 4589999999999999999999997 889999774322222211100 00000001111222233222 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccC------CCHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG------GSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~g------g~~~~~~ 157 (474)
-..+.+..+. ...-++|||+.-.. .....+.+.+...++.++.+.-.|+. ..| .+-++ +++ ...
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g~~----~dp~~i~i~di~~t~~~p-la~ 160 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAGGK----LDPTRIRVADISKTSGDP-LAR 160 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCcCC----CCCCeEEEccEeccccCc-HHH
Confidence 1111222222 12357999986654 33345666677778888876433331 122 22221 232 345
Q ss_pred HHHHHHHHHhc
Q 011931 158 YIEDILLKVAA 168 (474)
Q Consensus 158 ~v~~ll~~lg~ 168 (474)
.++.-|+.-+.
T Consensus 161 ~~R~~Lrk~~~ 171 (231)
T cd00755 161 KVRKRLRKRGI 171 (231)
T ss_pred HHHHHHHHcCC
Confidence 67777776554
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.37 Score=45.90 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=56.8
Q ss_pred EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC--
Q 011931 33 ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-- 110 (474)
Q Consensus 33 V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 110 (474)
|.+||+++++.+.+.+.. ++..+++++++++ ..+|+|++|.|+.. ..+.... .|+.|.-|+-.+.+
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~--~~vDaVviatp~~~-H~e~a~~---aL~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLP--EDVDIVVEAASQEA-VKEYAEK---ILKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhc--CCCCEEEECCChHH-HHHHHHH---HHHCCCCEEEECCccc
Confidence 458999999998887754 2457889999874 24999999999874 4444333 34456544445553
Q ss_pred -CchhHHHHHHHHHHcCCeEE
Q 011931 111 -WYENTERREKAMAELGLLYL 130 (474)
Q Consensus 111 -~~~~~~~~~~~l~~~g~~~v 130 (474)
.....+++.+..++.|..+.
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVY 93 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEE
Confidence 23445666666677776543
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.3 Score=46.36 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688888 7999999999999999999999999876655443
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.25 Score=54.52 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=69.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|.+|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+.-.++.+..+. +++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in-P~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN-PFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-CCCeEEEEecC
Confidence 4589999999999999999999997 77888866422222221110 000000001111223333222 45555565543
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. .+-+..+ +..-++|||+.......+ ..+.+.+...++.++.+++.|
T Consensus 122 i~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 21 2222333 345689999987643233 344556667788888876554
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.055 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=32.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|+|.|||.|.-|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.28 Score=46.71 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=53.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|.| .|.+|..+++.|++.|++|++.+|+++..+++.+.... .-.. ..++..=+.+...+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~~ 65 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD--------------AGGS---VIYLVADVTKEDEI 65 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEECCCCCHHHH
Confidence 577787 79999999999999999999999998776665543210 0000 12222233444456
Q ss_pred HHHHHHHHhcccCCCEEEecCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st 109 (474)
+.+++.+.+.+.+=++||.+..
T Consensus 66 ~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 66 ADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 6666666555555566666554
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.28 Score=50.88 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=61.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~~ 85 (474)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.+ +... . .+... ...+|+||.+ +|+..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996543211 11111 2222 2 22221 1238988765 34332
Q ss_pred -hHH---HHHH--HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 86 -PVD---ETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 86 -~v~---~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.+. .++. +++..+.+..|-|..|++.-.++.-+...|...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 122 2221 22222223345566777775555556677776663
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.53 Score=48.28 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+.. .....+..-+....+.+..+. +++-|.+.+..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCCeeEEeeee
Confidence 3579999999999999999999997 89999987432222221100 000000011112222232222 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-. ...+.+ .+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 120 i~-~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 120 LT-AENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred cC-HHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 11 112222 344568999988764 333334455566788888776543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.058 Score=55.94 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.91 Score=41.53 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=76.1
Q ss_pred EEEEc--ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 10 IGLAG--LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 10 IgiIG--lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+-=|| .|.++--+| ++....+|+.+|++++.++........-+..++.. ..+.-++...+.++|.||+--. ..
T Consensus 38 l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~ 113 (187)
T COG2242 38 LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GN 113 (187)
T ss_pred EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CC
Confidence 44455 556666666 44455689999999988766544332211012222 2233445555667999998876 36
Q ss_pred HHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCC-eEEecCCCC
Q 011931 87 VDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGL-LYLGMGVSG 136 (474)
Q Consensus 87 v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~-~~v~~pvsg 136 (474)
++.+++.....|++| .+|++..+. ++.....+.+++.|+ ..+..-++-
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeec
Confidence 899999988888875 566776664 455566677788887 555444443
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.49 Score=46.19 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=54.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
++|-|.| .|.+|..+++.|++.|++|++.||+.+..++..+.... .. .++.++ =+.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~d~ 67 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVRTDVSDA 67 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEECCCCCH
Confidence 4677777 68999999999999999999999998776655432210 01 223222 23333
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666655544445777777654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.43 Score=46.54 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=78.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|++.| -+++++|.+.-....+..+... ....+-.-+.-.++.+..+. +++-+.+++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~IN-P~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQIN-PECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHC-CCcEEEEEecc
Confidence 457999999999999999999999 4899999774332222211100 00000000111222222221 45555555432
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccC------CCHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG------GSFEAYK 157 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~g------g~~~~~~ 157 (474)
- ..+-.+.+.. ..-++|||+.-.. .....+.+.+...++.++.+.=.|+ +--| .+-++ ++ ....
T Consensus 109 i-~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~gGag~----k~dp~~~~~~di~~t~~~-pla~ 179 (268)
T PRK15116 109 I-TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTGGAGG----QIDPTQIQVVDLAKTIQD-PLAA 179 (268)
T ss_pred c-ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEECCccc----CCCCCeEEEEeeecccCC-hHHH
Confidence 1 1112222221 2357899987643 3344566777778888886632222 2222 23222 23 3446
Q ss_pred HHHHHHHH-Hh
Q 011931 158 YIEDILLK-VA 167 (474)
Q Consensus 158 ~v~~ll~~-lg 167 (474)
.++.-|+. .+
T Consensus 180 ~~R~~lr~~~~ 190 (268)
T PRK15116 180 KLRERLKSDFG 190 (268)
T ss_pred HHHHHHHHhhC
Confidence 67777776 44
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.13 Score=51.30 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=55.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCc---EEEEe--CChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFP---ISVYN--RTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~---V~v~d--r~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+++|||+| .|.+|+.|...|.+..+. +.++- |+..+- -++..+. +..-.+..+.. .++++|++|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~-------~~v~~~~~~~~-~~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKS-------IGVPEDAADEF-VFSDVDIVFF 72 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcc-------ccCcccccccc-ccccCCEEEE
Confidence 46899997 899999999999996553 34443 333222 2222211 11111111111 1234999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.+.. ..+.+...+. +.|.+|||.++..
T Consensus 73 ~ag~~-~s~~~~p~~~---~~G~~VIdnsSa~ 100 (334)
T COG0136 73 AAGGS-VSKEVEPKAA---EAGCVVIDNSSAF 100 (334)
T ss_pred eCchH-HHHHHHHHHH---HcCCEEEeCCccc
Confidence 99875 3455554443 4689999988864
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.52 Score=49.44 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHH--HHHHHHhhhhcCCCCccc--c-CCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSK--VDETVERAKKEGDLPLFG--F-RDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~~~~~~~~~~~~--~-~s~~e~~~~l~~~dvIil 79 (474)
+++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+++.+ + +.. . .+.+ .+.+ +|+||.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g-------~~~~~g~~~~~-~~~~---~d~vV~ 74 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-D-------VELHSGGWNLE-WLLE---ADLVVT 74 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-C-------CEEEeCCCChH-Hhcc---CCEEEE
Confidence 36799999999999999999887 5899999976432 223321 2 222 1 2333 3344 898877
Q ss_pred ec--CCC-hhHHHHHH---------HHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 80 LV--KAG-APVDETIK---------TLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 80 ~v--p~~-~~v~~vl~---------~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+- |+. ..+....+ +++.. +....|-|..|+++-.++.-+...|...|..+.
T Consensus 75 SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 138 (438)
T PRK04663 75 NPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVA 138 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 54 322 22222211 23322 232334566677765555556677777665443
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.33 Score=46.07 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=35.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|+| .|.+|..+++.|+++|++|++.+|++++.+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA 47 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4788998 5999999999999999999999999887665543
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.061 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=32.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
++|.|||.|..|..+|..|++.|++|++++++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5799999999999999999999999999999864
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.46 Score=45.75 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=33.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
+++-|+| .|.+|..+++.|++.|++|.+.+|+.++.+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566777 578999999999999999999999987766654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.36 Score=46.35 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=55.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+|+.|++.|++|++.+|++++.+.+.+.... .-.. ..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--------------LGID---ALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEEccCCCHHH
Confidence 5688887 79999999999999999999999998776655432210 0001 2233333344455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..++.+.....+=+.||+++..
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665554445677777543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.42 Score=45.37 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=64.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEe-----
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIML----- 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~----- 80 (474)
.++|.=||+| |..|+..|++.|.+|++.|.+++.++.........+ ..+ -...+.+|+.+.=++-|+|+++
T Consensus 60 g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3568888988 679999999999999999999988876654433221 111 1234566666532347988775
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEec
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDG 107 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~ 107 (474)
||++ +.++..+...++||.+++..
T Consensus 137 v~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 137 VPDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEe
Confidence 4544 44677777888888766543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.48 Score=46.04 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+|+.|+++|++|.+.+|+ ++.+++.+.... .-.. ...+.+=+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 68 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS--------------NGGK---AKAYHVDISDEQQ 68 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh--------------cCCe---EEEEEeecCCHHH
Confidence 3566777 5899999999999999999999999 655554432210 0001 2333444455556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|++...
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 69 VKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHcCCcCEEEECCCC
Confidence 777777766555444677776654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.41 Score=45.80 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... . .. ...+..-+.+...
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------~------~~---~~~~~~D~~~~~~ 69 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--------G------GE---AVALAGDVRDEAY 69 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------C------Cc---EEEEEcCCCCHHH
Confidence 3577777 689999999999999999999999988777665432110 0 00 1222222333345
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 70 AKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 555666655544444666666543
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.58 Score=44.38 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=34.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 4688887 599999999999999999999999977665544
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.44 Score=49.72 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=66.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEE-Ee----------CChHHHHHHHHhhhh-cCC---C----CccccCCHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISV-YN----------RTTSKVDETVERAKK-EGD---L----PLFGFRDPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~d----------r~~~~~~~l~~~~~~-~~~---~----~~~~~~s~~e~ 67 (474)
-++|.|.|.|++|...|..|.+.|.+|++ .| .+.+++....+.... .+. + +... -+.+++
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~d~~ 306 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEGARP 306 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCCccc
Confidence 35899999999999999999999999986 67 555554311110000 000 0 0111 123333
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.. ..||+++-|.-...-..+....+.. ++. +|+..+|. |.+ .+..+.+.++|+.++.
T Consensus 307 ~~--~~cDIliPaAl~n~I~~~na~~l~a---~g~~~V~EgAN~-P~t-~eA~~~L~~rgI~~~P 364 (444)
T PRK14031 307 WG--EKGDIALPSATQNELNGDDARQLVA---NGVIAVSEGANM-PST-PEAIKVFQDAKILYAP 364 (444)
T ss_pred cc--CCCcEEeecccccccCHHHHHHHHh---cCCeEEECCCCC-CCC-HHHHHHHHHCCcEEeC
Confidence 22 1389888776544222222233322 233 66666776 444 4556677889988875
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.74 Score=42.63 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred CcEEEEcccH--hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCCccc-cCCHHHHHhhc-CCCcEEEEecC
Q 011931 8 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLPLFG-FRDPESFVNSI-QKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~-~~~~~~-~~s~~e~~~~l-~~~dvIil~vp 82 (474)
.+|.-+|+|. ++..+++.+ ..+.+|+.+|++++.++...+.....+ ..++.. ..+..+....+ ...|.|++...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 4688888876 333333332 234589999999988775544322110 001221 23444444333 34899998664
Q ss_pred CChhHHHHHHHHHhcccCCCE-EEecCCCCchhHHHHHHHHHHcCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDC-IIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.. ....+++.+...|++|.. +++.. ......+....+++.|+
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 121 SE-KLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 33 567788888888888665 44443 33455666667777775
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.13 Score=50.09 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=29.7
Q ss_pred EEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHH
Q 011931 11 GLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 44 (474)
Q Consensus 11 giIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 44 (474)
-|.| +|.+|+.+++.|++.|++|++.+|++++..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 36 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGA 36 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCC
Confidence 4666 799999999999999999999999987643
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.32 Score=46.57 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
+++-|.|. |.+|..++..|++.|++|.+.+|++++.+++.+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE 52 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 35667774 8999999999999999999999998877766543
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.076 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999999999998864
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.2 Score=49.09 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++.||| -..+|.+++..|.+ ++..|++++.+. .++.+.++. +|+||.++.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------------------~~l~~~~~~---ADIVI~AvG 213 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------------------PDLAEECRE---ADFLFVAIG 213 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecC
Confidence 4799999 66789999999998 678898887442 245566666 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+.-+. ...+++|.+|||.+...
T Consensus 214 ~p~li~------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 214 RPRFVT------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCCcCC------HHHcCCCCEEEEeeeec
Confidence 764322 13468999999998653
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.17 Score=41.80 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|||.|.+|..=++.|++.|.+|+++.++.+..+ .. ++.. ...++ .+..+++|+.++.+. .
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~-------i~~~~~~~~~---~l~~~~lV~~at~d~-~ 72 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GL-------IQLIRREFEE---DLDGADLVFAATDDP-E 72 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TS-------CEEEESS-GG---GCTTESEEEE-SS-H-H
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hH-------HHHHhhhHHH---HHhhheEEEecCCCH-H
Confidence 4799999999999999999999999999998861111 11 1111 12222 244489999888775 4
Q ss_pred HHHHHH
Q 011931 87 VDETIK 92 (474)
Q Consensus 87 v~~vl~ 92 (474)
+...+.
T Consensus 73 ~n~~i~ 78 (103)
T PF13241_consen 73 LNEAIY 78 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 474 | ||||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-138 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-138 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-130 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-129 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-129 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 1e-128 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 1e-128 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 1e-128 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-115 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-113 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 1e-112 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 1e-112 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 3e-71 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 2e-16 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 3e-06 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 7e-05 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 7e-04 |
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 474 | |||
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 0.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 0.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-118 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 5e-16 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 6e-16 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 8e-16 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 8e-16 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 9e-16 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 9e-16 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 2e-15 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 3e-15 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 3e-15 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 3e-14 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 5e-14 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 9e-14 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 1e-13 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 2e-13 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 1e-11 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 2e-06 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 3e-06 |
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 797 bits (2060), Expect = 0.0
Identities = 233/474 (49%), Positives = 321/474 (67%), Gaps = 21/474 (4%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E + + + L + E F
Sbjct: 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKN---LVFTKTLEEF 62
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+
Sbjct: 63 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSG 186
++G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G
Sbjct: 123 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAG 182
Query: 187 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246
++VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT ++
Sbjct: 183 HYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVL 242
Query: 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVE 293
KDD+G+GY+VDK+LDK G KGTGKWT + A DL V P I +ERV+
Sbjct: 243 KRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVK 302
Query: 294 AAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 353
A+KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G
Sbjct: 303 ASKVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYG 358
Query: 354 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 413
+A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +
Sbjct: 359 TIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQA 418
Query: 414 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467
G P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 419 GTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 796 bits (2059), Expect = 0.0
Identities = 240/472 (50%), Positives = 313/472 (66%), Gaps = 21/472 (4%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + L + + F
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEF 72
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+ G+G+
Sbjct: 133 NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH 192
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
+VKM+HNGIEYGDMQLIAEAY +LK LTNEEL FTEWN GEL S+LI+IT DIF
Sbjct: 193 YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFT 252
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
KD+ G+ YLVD +LD+ KGTGKWT Q A DL I ++RV A
Sbjct: 253 KKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAA 311
Query: 295 AKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE 354
+KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE
Sbjct: 312 SKVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGE 367
Query: 355 LARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSG 414
+A+I++ GCIIRA FL +I A N +ANLL+ P F + D Q A R VV A+ +G
Sbjct: 368 IAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNG 427
Query: 415 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 466
I P S+++AY+DSYR LPANL+QAQRDYFGAHTY+RID EG FHTEW
Sbjct: 428 IPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 794 bits (2052), Expect = 0.0
Identities = 224/472 (47%), Positives = 299/472 (63%), Gaps = 20/472 (4%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + K + G E
Sbjct: 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEM 60
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V+ ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G+
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187
L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGH 180
Query: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247
FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ F EWNK EL SFLIEITA I
Sbjct: 181 FVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILK 240
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
+D G +L+ K+ D G KGTGKWT A + V I +ER++A
Sbjct: 241 FQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA 299
Query: 295 AKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE 354
+K K DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G
Sbjct: 300 SKKLKGPQ---NIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGG 356
Query: 355 LARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSG 414
+A +W+GGCIIR+VFL +IK A+DRN L NLL+D F + + Q +WRR + + +G
Sbjct: 357 IALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAG 416
Query: 415 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 465
I P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 417 IPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 468
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 779 bits (2013), Expect = 0.0
Identities = 227/486 (46%), Positives = 302/486 (62%), Gaps = 27/486 (5%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
GL GLAVMGQNL LN A+ GF + YNRT SKVD + K + G
Sbjct: 4 HHHHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK--SIIG 61
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120
E F++ +++PR +++LVKAGAPVD I + +EKGD IIDGGN + ++ RR +
Sbjct: 62 ATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE 121
Query: 121 AMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
+ + G+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I ++A+ D PC +V
Sbjct: 122 ELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKS-DGEPCCEWV 180
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
G+G++VKM+HNGIEYGDMQLI EAYD++K +G T++E+ +VF +WN G L SFL+E
Sbjct: 181 GPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVE 240
Query: 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI------------ 288
IT DI D G LV+K++D G KGTGKWT A DL + I
Sbjct: 241 ITRDILKFDDVDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSAL 299
Query: 289 -EERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKG 347
ER+ A+KV G V + D+++ +DD+ QALYASKI SYAQG LIR + G
Sbjct: 300 KNERIRASKVLP--GPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYG 357
Query: 348 WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407
W L +A +W+GGCIIR+VFL +I KAY DL NLL + FA + QS WR+ +
Sbjct: 358 WKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSI 417
Query: 408 CLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS------- 460
LA GI TP S++L+++D YR ERLPANL+QAQRDYFGAHT+ + S
Sbjct: 418 ALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDK 477
Query: 461 -FHTEW 465
H W
Sbjct: 478 DIHINW 483
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 752 bits (1943), Expect = 0.0
Identities = 167/478 (34%), Positives = 255/478 (53%), Gaps = 23/478 (4%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP-LFGFRDPESFV 68
+G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++ L F E+F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++KPR ++LV+AGA D TI+ L EKGD ++D GN +++ RR + + GL
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
+LGMG+SGGEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT GG+G+
Sbjct: 124 FLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC 183
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW-NKGELLSFLIEITADIFG 247
VKM HN EY +Q+ E +D+L+++G L N+E+ V +W +K L S++++I+
Sbjct: 184 VKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAAR 242
Query: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEA 294
KD G YL + V+D+ G KGTG W+ Q+A ++ V AP++ ER
Sbjct: 243 AKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQAN 301
Query: 295 AKVFK--SGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 352
A + G I + ++ + I YAQ +R + L L
Sbjct: 302 ASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNL 361
Query: 353 GELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA-I 411
++ GCI++ L + +A+++N +++NL+ F EI +R +V L
Sbjct: 362 PATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALITS 419
Query: 412 NSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEWFKI 468
+S P +S+SL Y + L LV QRD FG H YER+D +G +W ++
Sbjct: 420 KLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-118
Identities = 82/321 (25%), Positives = 139/321 (43%), Gaps = 50/321 (15%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GL MG ++ + + G VY+ + V ++EG + G R E F
Sbjct: 24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA----LEREG---IAGARSIEEFC 76
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ KPRV+ ++V A VD ++ ++ + D +IDGGN Y++ RR M G+
Sbjct: 77 AKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGIT 135
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT---------- 178
Y+ +G SGG G G LM GG +A + ++ + +A + + P
Sbjct: 136 YVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGI-GAAPRTPGREKREGTAE 194
Query: 179 ----YVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE-------------- 220
+ G+G+FVKM+HNGIEYG M AE ++L
Sbjct: 195 LGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPD 254
Query: 221 ------ELQNVFTEWNKGELL-SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKW 273
+L ++ W +G ++ S+L++++A D + + + G G+W
Sbjct: 255 FYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRW 308
Query: 274 TVQQAADLSVAAPTIEERVEA 294
TV A D V A + +
Sbjct: 309 TVAAAIDEGVPAHVLSSALYE 329
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 5e-16
Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 19/211 (9%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
M +G+ GL MG A + G + +
Sbjct: 1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE---------GA 51
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTER 117
S +++LV A V + + ++ M+ G ++ + +
Sbjct: 52 CGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQE 111
Query: 118 REKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176
A+ L L L VSGG A G ++M GS A+ ++ +L VA+ V
Sbjct: 112 IAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISD- 170
Query: 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
G+G+ VK+IH + + AEA
Sbjct: 171 -----TPGAGSTVKIIHQLLAGVHIAAAAEA 196
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 6e-16
Identities = 41/204 (20%), Positives = 80/204 (39%), Gaps = 21/204 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++G GL +MG+ ++ N+ + G+ + V +R + + + G +
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------AGAETASTA 55
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
++ VII ++ V E + + G +ID + + A+
Sbjct: 56 KAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKA 115
Query: 125 LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG 183
G+ L VSGGE A G S+M GG + D++ + V +
Sbjct: 116 KGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM-------AGSVVHTGDI 168
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEA 207
G+GN K+ + I ++ ++EA
Sbjct: 169 GAGNVTKLANQVIVALNIAAMSEA 192
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 43/209 (20%), Positives = 83/209 (39%), Gaps = 21/209 (10%)
Query: 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFR 62
G + +G GL +MG+ +++N+ + GF ++V+NRT SK DE VE + P +
Sbjct: 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIK 76
Query: 63 DPESFVNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERRE 119
+ I ++ + + + +G ID E + +
Sbjct: 77 KCK----------YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKIN 126
Query: 120 KAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 178
+A+ G ++ VSG ++ A G ++ G ++ + G
Sbjct: 127 EAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL-------GKRSF 179
Query: 179 YVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
Y+ + G+G +K+I N I M +E
Sbjct: 180 YLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 8e-16
Identities = 28/209 (13%), Positives = 64/209 (30%), Gaps = 20/209 (9%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG 60
+ + + + GL MG +A + ++G ++++NR+ K V G
Sbjct: 3 LSDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA----------G 52
Query: 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLS-AYMEKGDCIIDGGNEWYENTERRE 119
ES ++ I ++ E + A I+D + +
Sbjct: 53 AHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQ 112
Query: 120 KAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 178
+ + G Y+ + H + G EA++ +L +
Sbjct: 113 GLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL-------AGHTV 165
Query: 179 YVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
++ + + + + M EA
Sbjct: 166 FLPWDEALA-FATVLHAHAFAAMVTFFEA 193
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 9e-16
Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 21/204 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
T G GL +MG +A N+ GF ++V+NR +K V ++ P +
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACD-- 59
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124
+ I ++ A E + + G ID E + A+
Sbjct: 60 --------ITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTA 111
Query: 125 LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKG 183
G +L VSG ++ A G ++ G + + G ++ +
Sbjct: 112 RGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL-------GKKCLHLGEV 164
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEA 207
G G +K++ N I M + E
Sbjct: 165 GQGARMKLVVNMIMGQMMTALGEG 188
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 9e-16
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 21/203 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+I G MG +A + E G+ + V+NRT ++ G E
Sbjct: 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA----------LGATIHEQA 81
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ + +++ +++ GA V + + + ++A M+ G +D + + L
Sbjct: 82 RAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL 141
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G+ +L VSGG GA G +M GG ++ +L T+V G
Sbjct: 142 GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR--------ATHVGPHG 193
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
SG K+ + I + +AEA
Sbjct: 194 SGQLTKLANQMIVGITIGAVAEA 216
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 35/211 (16%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+IG GL +MG + N+ + G ++V+NRT K D ++ + G P +
Sbjct: 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTP----AE---- 82
Query: 68 VNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENT-------ER 117
+ + V + + + + G C +D +
Sbjct: 83 --VVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD-------MSTVDADTVTE 133
Query: 118 REKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176
+ + G +L VSG ++ + G ++ G Y+ + G
Sbjct: 134 LAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM-------GKT 186
Query: 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207
++ + G+ + +I N ++ M IAE
Sbjct: 187 SFFLGEVGNAAKMMLIVNMVQGSFMATIAEG 217
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 19/201 (9%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++G GL MG +A + E ++VY+ + E G +S
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA----------GATLADSV 65
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
+ + I ++ V E + L+ + + G I + + +
Sbjct: 66 ADVAAADLIHITVLDDAQ-VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDI 124
Query: 128 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
+ VSGG A G + M G E Y+ I+ AA V + + G+G
Sbjct: 125 HIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAV-------VIHAGEPGAG 177
Query: 187 NFVKMIHNGIEYGDMQLIAEA 207
+K+ N + + EA
Sbjct: 178 TRMKLARNMLTFTSYAAACEA 198
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 21/203 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+ G GL +MG +A N+ + G ++++NR+ K +E + P
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCP--- 59
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
V ++ A +E + + +G +D ++R A+
Sbjct: 60 -------VTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAK 112
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G +L VSG ++ A G ++ G Y K+ G + ++ G
Sbjct: 113 GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM-------GKKIIHLGDVG 165
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
G +K++ N + G M E
Sbjct: 166 KGAEMKLVVNMVMGGMMACFCEG 188
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP 64
++ +IG GL MG+ +A+N+ ++G + ++ + V V + G +
Sbjct: 2 EKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ----------GAQAC 51
Query: 65 ESFVNSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKA 121
E+ +I + V+ + + + + G I+D + +T + K
Sbjct: 52 ENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKV 111
Query: 122 MAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
AE G+ Y+ VSGG +GA G ++M G S ++ I+ +L + + +V
Sbjct: 112 AAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDI-------YHV 164
Query: 181 SKGGSGNFVKMIHNGIEYGDMQLIAEA 207
G+G+ VK+++N + +M +AEA
Sbjct: 165 GDTGAGDAVKIVNNLLLGCNMASLAEA 191
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 9e-14
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG +A+N+A G + V +L G + E+
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIG-----------PVADELLSLGAVNVETAR 53
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +I ++V V++ + + +G I+D + T+R + + E+
Sbjct: 54 QVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G YL VSGGE GAR G S+M GG + + ++ + + G +T V G
Sbjct: 114 GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL-------GKNITLVGGNG 166
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
G K+ + I +++ ++EA
Sbjct: 167 DGQTCKVANQIIVALNIEAVSEA 189
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 21/201 (10%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
++ GL MG +A ++A + + V+NRT K E P
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG--------SEAVPLER 52
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V + RVI + V E + L Y+ +G +D + E + R + + E G+
Sbjct: 53 V---AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGV 109
Query: 128 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
YL VSGG GA G ++M GG EA + + L V +V G+G
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL--------AYAKKVVHVGPVGAG 161
Query: 187 NFVKMIHNGIEYGDMQLIAEA 207
+ VK I+N + ++ E
Sbjct: 162 HAVKAINNALLAVNLWAAGEG 182
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 21/203 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+G GL MG +A N+ + G+P+ +Y+ E + G + S
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA----------GEQVVSSPA 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +K II ++ E + ++KG +ID ++ K + ++
Sbjct: 52 DVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKM 111
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG 184
G +++ VSGG AR G + M GG + + +++L + + V Y G
Sbjct: 112 GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-------VYCGAVG 164
Query: 185 SGNFVKMIHNGIEYGDMQLIAEA 207
+G K+ +N + M AEA
Sbjct: 165 TGQAAKICNNMLLAISMIGTAEA 187
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 34/211 (16%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES 66
++G G +A + + G ++ Y+ +++ RA++ G S
Sbjct: 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAE--SWRPRAEE------LGVSCKAS 76
Query: 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT------ERREK 120
+ VI LV A A + E + ++ +G D +
Sbjct: 77 VAEVAGECDVIFSLVTAQAAL-EVAQQAGPHLCEGALYADF------TSCSPAVKRAIGD 129
Query: 121 AMAE--LGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCV 177
++ Y + V + H P ++ G + ++
Sbjct: 130 VISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARR---FQAAFTLYGCRI------E 180
Query: 178 TYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208
+ G +KM + + G L EA
Sbjct: 181 VLDGEVGGAALLKMCRSAVLKGLEALFLEAL 211
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 4e-11
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 34/226 (15%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKV---DETVERAKKEGDL 56
+ +T I G Q++A + + ++ Y+ + RA + G
Sbjct: 18 LYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVE 77
Query: 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT- 115
PL D + V++ LV A + + ++ ID N+
Sbjct: 78 PL---DDVAGIACA----DVVLSLVVGAATK-AVAASAAPHLSDEAVFIDL------NSV 123
Query: 116 -----ERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 170
A+A ++ V ++ G +VA ++
Sbjct: 124 GPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAV---------EVAERL 174
Query: 171 PDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215
G + V G + +KMI + + G L+ EA + G
Sbjct: 175 NALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 48/372 (12%), Positives = 106/372 (28%), Gaps = 113/372 (30%)
Query: 157 KYIEDILLKVAA--------QVPDSGPCVTYV-----SKGGSG--NFVKMIHN------- 194
K ++D+ + + D+ + SK FV+ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 195 ---GIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWN--KGELLSFLIEITADIFGIK 249
E ++ Y ++ +L N+ VF ++N + + L + +
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYND--NQVFAKYNVSRLQPYLKLRQ------ALL 145
Query: 250 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQ 309
+ + ++ +D G+ G+GK V A D V +V+ F +
Sbjct: 146 ELRPAKNVL---ID--GVLGSGKTWV--ALD--VCL---SYKVQ--CKMDFKIFWLNLKN 191
Query: 310 AVDKQKLIDDVRQALYASKICSYAQGM------------------NLIRAKSIEKG---- 347
+ + + ++ Q L ++ L+++K E
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 348 ---WDLKLGELARIWK---GGCII------RAV--FLDRIKKAYDRNADLANLLVDPE-- 391
+ A+ W C I + V FL + + L E
Sbjct: 251 LNVQN------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 392 --FAKEIVDRQSAWRRVVC----LAINS-GISTPGMSSSLAYFDSYRRERLPANLVQA-- 442
K + R R V ++ S ++ + ++L ++++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSL 363
Query: 443 -------QRDYF 447
R F
Sbjct: 364 NVLEPAEYRKMF 375
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 31/207 (14%), Positives = 58/207 (28%), Gaps = 24/207 (11%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
R+G G + Q LA + +G + S T+ERA+ E+
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS--PSTIERAR--------TVGVTETSE 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ V+I V G + A +D N E + + G
Sbjct: 52 EDVYSCPVVISAVTPGVALGA---ARRAGRHVRGIYVDINNISPETVRMASSLIEKGG-- 106
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++ + G ++ G + + G +
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAE---------EFMKLNRYGLNIEVRGREPGDASA 157
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVG 215
+KM+ + G L+ E +G
Sbjct: 158 IKMLRSSYTKGVSALLWETLTAAHRLG 184
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-06
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 22/215 (10%)
Query: 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLF 59
M + T I L G + NLA + KGF I VY+RT E ++ +
Sbjct: 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK------VEAE 57
Query: 60 GFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE 119
D ++ I+ +K A E ++ + + ++ E
Sbjct: 58 YTTDLAEVN---PYAKLYIVSLKDSA-FAELLQGIVEGKREEALMVHTAGSIP--MNVWE 111
Query: 120 KAMAELGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 178
+ G+ Y S E P + S E +++ I ++ +V
Sbjct: 112 GHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRV-------- 163
Query: 179 YVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213
Y + + + + A A ++LK
Sbjct: 164 YDADSEQRKSLHLAAVFTCNFTNHMYALAAELLKK 198
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 474 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.98 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.97 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.97 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.97 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.95 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.95 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.95 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.93 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.93 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.93 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.92 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.9 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.9 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.9 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.87 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.85 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.85 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.84 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.84 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.83 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.82 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.82 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.82 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.81 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.81 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.8 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.79 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.79 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.78 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.77 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.76 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.76 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.75 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.74 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.73 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.73 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.73 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.73 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.72 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.71 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.71 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.7 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.68 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.68 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.68 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.67 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.48 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.66 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.65 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.65 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.64 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.63 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.63 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.62 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.61 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.61 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.53 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.53 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.48 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.48 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.46 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.46 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.39 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.33 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.32 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.32 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.31 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.29 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.29 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.29 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.28 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.25 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.25 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.23 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.22 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.22 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.22 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.22 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.2 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.2 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.2 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.2 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.19 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.19 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.19 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.18 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.18 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.18 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.18 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.18 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.17 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.16 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.12 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.1 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.1 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.1 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.1 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.05 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.03 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.99 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.97 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.96 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.95 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.93 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.92 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.88 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.8 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.79 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.77 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.73 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.73 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.72 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.7 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.7 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.7 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.69 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.68 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.65 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.65 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.64 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.64 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.64 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.63 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.63 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.63 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.61 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.61 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.6 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.59 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.57 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.57 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.55 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.54 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.54 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.53 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.52 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.51 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.5 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.49 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.47 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.47 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.46 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.46 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.46 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.46 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.46 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.45 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.44 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.44 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.44 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.44 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.43 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.41 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.4 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.39 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.37 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.37 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.37 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.35 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.35 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.33 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.33 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.33 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.32 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.32 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.32 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.31 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.3 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.3 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.29 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.29 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.27 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.26 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.26 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.24 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.23 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.22 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.22 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.21 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.2 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.2 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.19 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.19 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.18 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.17 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.17 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.17 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.16 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.14 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.14 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.12 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.12 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.12 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.11 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.11 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.11 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.1 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.1 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.09 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.09 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.08 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.08 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.07 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.06 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.06 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.06 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.06 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.06 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.05 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.02 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.02 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.02 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.99 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.98 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.98 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.98 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.98 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.97 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.96 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.96 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.94 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.94 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.94 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.91 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.9 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.89 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.88 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.87 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.86 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.86 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.86 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.85 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.85 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.84 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.83 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.81 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.8 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.79 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.79 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.79 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.78 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.78 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.77 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.74 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.7 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.7 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.69 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.69 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.68 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.68 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.66 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.64 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.63 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.61 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.61 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.59 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.56 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.56 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.52 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.5 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.5 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.47 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.45 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.45 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.44 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.44 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.4 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.38 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.34 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.34 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.33 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.32 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.31 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.31 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.31 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.28 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.27 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.26 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.23 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.22 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.21 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.21 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.2 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.18 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.14 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.12 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.09 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.08 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.06 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.01 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.0 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.99 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.98 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.97 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.97 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.96 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.96 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.95 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.93 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.93 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.92 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.91 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.91 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.9 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.89 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.84 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.82 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.8 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.77 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.73 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.71 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.67 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.65 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.64 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.63 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.61 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.59 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.57 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.55 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.52 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.51 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.49 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.46 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.41 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.36 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.31 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.29 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.28 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.28 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.27 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.26 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.25 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.19 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.18 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.18 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.18 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.08 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 96.08 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.07 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.04 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 96.04 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.02 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.02 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.01 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.98 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.97 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.94 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.94 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.92 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.88 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.88 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.86 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.84 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.79 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.78 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.74 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.73 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.72 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.7 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.7 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.7 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.7 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.7 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.68 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.67 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 95.65 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.64 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.64 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.61 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.6 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.6 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.59 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.59 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.57 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.53 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.53 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 95.52 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.52 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.51 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.51 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.5 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.5 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.5 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.5 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.49 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.48 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.47 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.46 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.45 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.45 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.43 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.41 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.38 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.37 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.36 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.35 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.34 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 95.34 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.34 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.33 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.33 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.32 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.32 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 95.32 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 95.32 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.3 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.29 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.26 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.25 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.25 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.21 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.21 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 95.2 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 95.19 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 95.18 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 95.18 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.18 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.16 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.15 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.15 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.13 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.13 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.11 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.1 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.1 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.08 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.08 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.08 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.08 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 95.08 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.07 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 95.07 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.07 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.05 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.01 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 95.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 94.99 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.99 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.99 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.99 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.96 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.95 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.94 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 94.94 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 94.94 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.91 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.91 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 94.88 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 94.88 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.86 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.86 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 94.85 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.85 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.83 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 94.81 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 94.81 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 94.8 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.8 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.79 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 94.77 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 94.77 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 94.77 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.77 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.75 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.74 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.73 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 94.72 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.71 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.71 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 94.71 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 94.71 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-108 Score=859.14 Aligned_cols=461 Identities=48% Similarity=0.837 Sum_probs=426.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|+|||||+|.||.+||.+|+++||+|++|||++++++++.+.+.. +.++..+.+++|+++.|+.+|+||+|||+++
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~ 80 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK--GTKVVGAQSLKEMVSKLKKPRRIILLVKAGQ 80 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT--TSSCEECSSHHHHHHTBCSSCEEEECSCSSH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccC--CCceeccCCHHHHHhhccCCCEEEEecCChH
Confidence 46789999999999999999999999999999999999998876422 1134557899999987777999999999988
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (474)
+++++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+|++.++++|+++|+||+++++++++++|+.
T Consensus 81 ~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~ 160 (484)
T 4gwg_A 81 AVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQG 160 (484)
T ss_dssp HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011931 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (474)
Q Consensus 166 lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~-~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (474)
++.++.+++||+.|+|+.|+||++||+||+++++++++++|++.++++ .| ++++++.++|+.|+.|.+.||+++++.+
T Consensus 161 ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~G-ld~~~l~~v~~~w~~G~~~S~l~e~~~~ 239 (484)
T 4gwg_A 161 IAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-MAQDEMAQAFEDWNKTELDSFLIEITAN 239 (484)
T ss_dssp HSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred hcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 999876788999999999999999999999999999999999999999 88 9999999999999999999999999999
Q ss_pred cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCcc
Q 011931 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAV 311 (474)
Q Consensus 245 ~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~ 311 (474)
++..+| +.+++.+|.|+|.++|||||+|++++|.++|||+|++ ++|.++++++++|.+. ....
T Consensus 240 ~l~~~D-~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~---~~~~ 315 (484)
T 4gwg_A 240 ILKFQD-TDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF---QFDG 315 (484)
T ss_dssp HHHCBC-TTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C---CCCS
T ss_pred HHhcCC-ccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc---cccc
Confidence 998766 4567999999999999999999999999999999988 7899999999877421 1245
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChH
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 391 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~ 391 (474)
+..+|+|+||||+||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+||.
T Consensus 316 ~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~~~ 395 (484)
T 4gwg_A 316 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDF 395 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcCHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCc-cccccccCCC
Q 011931 392 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGS-FHTEWFKIAK 470 (474)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~-~h~~w~~~~~ 470 (474)
|.+.+++.++.||+||..|++.|||+|++|+||+||++||++++|+|||||||||||+|||+|+|++|. ||++|++++.
T Consensus 396 f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~~~ 475 (484)
T 4gwg_A 396 FKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 475 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 8999987555
Q ss_pred CCC
Q 011931 471 QSK 473 (474)
Q Consensus 471 ~~~ 473 (474)
+++
T Consensus 476 ~~~ 478 (484)
T 4gwg_A 476 TVS 478 (484)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-100 Score=805.21 Aligned_cols=460 Identities=49% Similarity=0.865 Sum_probs=421.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-hhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+..+|||||+|.||.+||.+|+++||+|++|||++++++++.+ ..... ++..+.+++++++.|+++|+||+|||++
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~ 85 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK---SIIGATSIEDFISKLKRPRKVMLLVKAG 85 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTS---SEECCSSHHHHHHTSCSSCEEEECCCSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCC---CeEEeCCHHHHHhcCCCCCEEEEEcCCh
Confidence 4468999999999999999999999999999999999998876 21101 3677889999998777899999999998
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (474)
.+++++++++.+.+++|++|||+||+.+.++.++.+.+.++|++|+++||+|++.++..|+++|+||+++++++++++|+
T Consensus 86 ~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~ 165 (497)
T 2p4q_A 86 APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQ 165 (497)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011931 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (474)
Q Consensus 165 ~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~-~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (474)
.++.+. +++||+.++|+.|+|+++||++|++.++++++++|++.++++ .| ++++++.+++..|+.+.+.||+++++.
T Consensus 166 ~~g~~~-dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~~~~~w~~g~~~S~l~~~~~ 243 (497)
T 2p4q_A 166 SISAKS-DGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGG-FTDKEISDVFAKWNNGVLDSFLVEITR 243 (497)
T ss_dssp HHSCEE-TTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred HhcCcc-CCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHhcCCccccHHHHHHH
Confidence 999875 577899999999999999999999999999999999999999 58 999999999999999999999999998
Q ss_pred ccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCc
Q 011931 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQA 310 (474)
Q Consensus 244 ~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~ 310 (474)
+++..+| ++++|.++.++|.++|||||+|+++.|.++|+|+|++ ++|..+++++.+|... ....
T Consensus 244 ~~l~~~d-~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~--~~~~ 320 (497)
T 2p4q_A 244 DILKFDD-VDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVP--KDAV 320 (497)
T ss_dssp HHHTCBC-TTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC--TTSC
T ss_pred HHHhcCC-CCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCcc--cccc
Confidence 8877655 6667999999999999999999999999999999999 6788999999877420 0123
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+||
T Consensus 321 ~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~ 400 (497)
T 2p4q_A 321 KDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNK 400 (497)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGGSH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhcCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceec--------cCCCccc
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERI--------DMEGSFH 462 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~--------d~~~~~h 462 (474)
.|...+++...+|||||+.|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+ |++|.||
T Consensus 401 ~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~~~h 480 (497)
T 2p4q_A 401 FFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIH 480 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccCCCCCC
Q 011931 463 TEWFKIAKQSK 473 (474)
Q Consensus 463 ~~w~~~~~~~~ 473 (474)
++|++++.+++
T Consensus 481 ~~w~~~~~~~~ 491 (497)
T 2p4q_A 481 INWTGHGGNVS 491 (497)
T ss_dssp CCCC-------
T ss_pred cccCCCCCccc
Confidence 99976555443
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-100 Score=799.37 Aligned_cols=453 Identities=52% Similarity=0.899 Sum_probs=420.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++++|||||+|.||++||.+|+++|++|++|||++++++++.+..... ++..+.+++++++.|+++|+||+|||++.
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~~ 90 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEFVESLETPRRILLMVKAGA 90 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTS---CEEECSSHHHHHHTBCSSCEEEECSCSSS
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEeCCHHHHHhCCCCCCEEEEECCCHH
Confidence 456899999999999999999999999999999999999887752101 26678899999987777999999999987
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (474)
+++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|++.+++.|+++|+||++++++.++++|+.
T Consensus 91 ~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~ 170 (480)
T 2zyd_A 91 GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTK 170 (480)
T ss_dssp HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988988888889999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011931 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (474)
Q Consensus 166 lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~-~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (474)
++.+..+++||+.++|+.|+|+++||++|++.++++++++|++.++++ .| ++++++.+++..|+.+.+.|++++++.+
T Consensus 171 ~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~l~~~w~~g~~~s~l~~~~~~ 249 (480)
T 2zyd_A 171 IAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLN-LTNEELAQTFTEWNNGELSSYLIDITKD 249 (480)
T ss_dssp HSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTTCBHHHHHHHH
T ss_pred HhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 998754689999999999999999999999999999999999999999 69 9999999999999999999999999999
Q ss_pred cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCcc
Q 011931 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAV 311 (474)
Q Consensus 245 ~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~ 311 (474)
+++.+| +++++.++.++|.+.||+||+|+.+.|.++|+|+|++ ++|..+++++.+|.. ....
T Consensus 250 ~l~~~d-~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~----~~~~ 324 (480)
T 2zyd_A 250 IFTKKD-EDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQA----QPAG 324 (480)
T ss_dssp HHHCBC-TTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCC----CCCC
T ss_pred HHhcCC-CCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCC----CCCC
Confidence 887655 6667999999988899999999999999999999999 678888888887742 1234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChH
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 391 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~ 391 (474)
+++||+|||||||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+||.
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~ 404 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPY 404 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcCHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCcccccccc
Q 011931 392 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467 (474)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 467 (474)
|.+.+++...+|||||+.|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 405 f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~~~h~~w~~ 480 (480)
T 2zyd_A 405 FKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCSCBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCCcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999963
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-98 Score=786.01 Aligned_cols=453 Identities=51% Similarity=0.900 Sum_probs=418.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ++..+.+++++++.++++|+||+|||++.+
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp~~~~ 81 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQAGAA 81 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCCTTHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEccCchH
Confidence 46899999999999999999999999999999999999887653111 256788999998877779999999999888
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++.+++++.+.+++|++|||++|+.+.++.++.+.+.+.|++|+++|++|++..+..|+++|+||+++.++.++++|+.+
T Consensus 82 v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 161 (474)
T 2iz1_A 82 TDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQI 161 (474)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888877899999999999999999999888999999999999999999
Q ss_pred hccCC-CCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011931 167 AAQVP-DSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (474)
Q Consensus 167 g~~~~-~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~-~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (474)
+.++. +++||+.++|+.|+|+++||++|++.++.+++++|++.++++ .| ++++++.+++..|+.+.+.||+++++.+
T Consensus 162 g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~G-l~~~~~~~l~~~w~~g~~~s~l~~~~~~ 240 (474)
T 2iz1_A 162 AAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILG-LSNAEIQAIFEEWNEGELDSYLIEITKE 240 (474)
T ss_dssp SCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred hcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccccHHHhhhh
Confidence 98742 578999999999999999999999999999999999999999 68 9999999999999999999999999998
Q ss_pred cccccccCCCc-chHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCc
Q 011931 245 IFGIKDDKGDG-YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQA 310 (474)
Q Consensus 245 ~l~~~~~~~~~-~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~ 310 (474)
++..+| +.++ +.++.++|.+.||+||+|+.+.|.++|+|+|++ ++|..+++.+.+|.. ...
T Consensus 241 ~l~~~d-~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~----~~~ 315 (474)
T 2iz1_A 241 VLKRKD-DEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL----DFS 315 (474)
T ss_dssp HTTCBC-SSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC----CCC
T ss_pred HhhcCC-CCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCC----cCC
Confidence 876655 5555 999999998899999999999999999999999 679999999987742 123
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+++||+|||||||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+||
T Consensus 316 ~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~ 395 (474)
T 2iz1_A 316 GDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDD 395 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGGSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhcCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCccccccccC
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKI 468 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~ 468 (474)
.|.+.+++.+++|||+|+.|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+|++|.||++|+++
T Consensus 396 ~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~~~h~~w~~~ 473 (474)
T 2iz1_A 396 YFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYTE 473 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSSCBCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCCeeeccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999863
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-97 Score=781.75 Aligned_cols=458 Identities=49% Similarity=0.840 Sum_probs=420.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-hhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+|||||+|.||.+||.+|+++||+|++|||++++++++.+ ... +.++..+.+++++++.++.+|+||+|||++.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK---GTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT---TSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcccc---CCCeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 68999999999999999999999999999999999998876 210 01366788999998755559999999999878
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++.+++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++.++..|+++++||+++.++.++++|+.+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~ 159 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888888899999999999999999999889999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011931 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~-G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 245 (474)
+.++.+++||+.++|+.|+|+++||++|++.++.+++++|++.++++. | ++++++.+++..|+.+.+.|++++++.++
T Consensus 160 g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G-~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 160 AAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-LGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp SCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 988645789999999999999999999999999999999999999999 8 99999999999999999999999999887
Q ss_pred ccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccc
Q 011931 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVD 312 (474)
Q Consensus 246 l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~ 312 (474)
+..++ +++++.++.+++..+||+||+|+++.|+++|+|+|++ ++|..+++.+.+|... ....+
T Consensus 239 l~~~d-~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~---~~~~~ 314 (482)
T 2pgd_A 239 LKFQD-ADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI---PFEGD 314 (482)
T ss_dssp HHCBC-TTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC---CCCSC
T ss_pred hhccC-CCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCcc---ccCcC
Confidence 77654 6777999999999999999999999999999999999 5798999999877421 12357
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHH
Q 011931 313 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 392 (474)
Q Consensus 313 ~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~ 392 (474)
.+||+|||||||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+||++|+.|
T Consensus 315 ~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~~ 394 (482)
T 2pgd_A 315 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFF 394 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCC-ccccccccCCCC
Q 011931 393 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG-SFHTEWFKIAKQ 471 (474)
Q Consensus 393 ~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~-~~h~~w~~~~~~ 471 (474)
.+.+++.+++|||+|+.|++.|+|+|++++||+||++|+++++|+|||||||||||+|||+|+|++| .||++|++++.+
T Consensus 395 ~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~~~~ 474 (482)
T 2pgd_A 395 KSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGS 474 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999765554
Q ss_pred CC
Q 011931 472 SK 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 475 ~~ 476 (482)
T 2pgd_A 475 VS 476 (482)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-94 Score=758.59 Aligned_cols=450 Identities=37% Similarity=0.652 Sum_probs=414.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh----hcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+... .. ++..+.+++++++.++++|+||+|||+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~---~i~~~~~~~e~v~~l~~aDvVilaVp~ 78 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAG---NLKAFETMEAFAASLKKPRKALILVQA 78 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGG---GEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCC---CeEEECCHHHHHhcccCCCEEEEecCC
Confidence 58999999999999999999999999999999999998887521 00 256778999999866679999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll 163 (474)
+.+++.+++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++.++..|+++++||+++.++.++++|
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll 158 (478)
T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIV 158 (478)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHH
Confidence 87899999999999999999999999999888888888887899999999999999999999888999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhc-cCcchhhhHhhh
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWN-KGELLSFLIEIT 242 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~-~~~~~s~~~~~~ 242 (474)
+.++.+..+++||+.++|+.|+|+++|+++|++.++.+++++|++.++++.| ++++++.+++..|+ .+.+.|++++++
T Consensus 159 ~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G-~~~~~~~~l~~~w~~~g~~~s~l~~~~ 237 (478)
T 1pgj_A 159 EAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 237 (478)
T ss_dssp HHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred HHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCcCchHHHhh
Confidence 9999875567899999999999999999999999999999999999999998 99999999999999 888999999999
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCC-CCCCC
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGF-GVQSN 308 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~-~~~~~ 308 (474)
.+++..+| +.+.+.++.+.|.++|||||+|+++.|+++|+|+|++ ++|..+++++++|.. . .
T Consensus 238 ~~~l~~~d-~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~~---~ 313 (478)
T 1pgj_A 238 IAAARAKD-KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSP---G 313 (478)
T ss_dssp HHHHHCBC-TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCC---C
T ss_pred chhhhcCC-CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCccc---c
Confidence 88876554 5334899999999999999999999999999999999 568888899887742 1 1
Q ss_pred Cc-cch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCC
Q 011931 309 QA-VDK---QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLA 384 (474)
Q Consensus 309 ~~-~~~---~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~ 384 (474)
.. .+. ..|+++|++|+|++++++|+|||+||+++|++|+|+||+.+|++|||+||||||.||+.|.++|+++|++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~~~~ 393 (478)
T 1pgj_A 314 YTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNIS 393 (478)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCCChh
Confidence 12 344 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhhHHHHHHH-HHHcCCChHHHHHHHHHHHhhcCCCch-hHHHHHHhhccCCccceeccCCCccc
Q 011931 385 NLLVDPEFAKEIVDRQSAWRRVVCL-AINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFH 462 (474)
Q Consensus 385 ~ll~~~~~~~~~~~~~~~~~~~v~~-a~~~gip~p~~~~al~y~~~~~~~~~~-~~~i~a~rd~fG~h~~~r~d~~~~~h 462 (474)
||| +.|.+++++.+.+||++|.. |++.|+|+|++|+||+|||+||+++|| +|||||||||||+|||+|+|++|.||
T Consensus 394 ~l~--~~~~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~~~h 471 (478)
T 1pgj_A 394 NLM--CAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRES 471 (478)
T ss_dssp CTT--GGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEEC
T ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCCcee
Confidence 999 99999999999999999999 999999999999999999999999999 99999999999999999999999999
Q ss_pred ccccc
Q 011931 463 TEWFK 467 (474)
Q Consensus 463 ~~w~~ 467 (474)
++|++
T Consensus 472 ~~w~~ 476 (478)
T 1pgj_A 472 FQWPE 476 (478)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99975
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=423.76 Aligned_cols=320 Identities=30% Similarity=0.481 Sum_probs=262.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|||||+|.||.+||.+|+++||+|++|||++++++++.+.+ +..+.+++++++..+.+|+||+|||++ ++
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v 94 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREG-------IAGARSIEEFCAKLVKPRVVWLMVPAA-VV 94 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECSCGG-GH
T ss_pred CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeCCHH-HH
Confidence 7899999999999999999999999999999999998887643 567889999999833349999999998 89
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
+++++++.+.++++++|||+||+.|.+++++.+.+.++|++|+++||+|++.+++.|+++|+||+++++++++++|+.++
T Consensus 95 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 95 DSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLA 174 (358)
T ss_dssp HHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-------------CCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcc
Q 011931 168 AQVPDS-------------GPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGEL 234 (474)
Q Consensus 168 ~~~~~~-------------~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~ 234 (474)
.+.... +++++++|+.|+|+++|+++|.+.++.+++++|++.++++.| +...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~-~~~~-------------- 239 (358)
T 4e21_A 175 PGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHAN-AGKE-------------- 239 (358)
T ss_dssp CCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC----------------
T ss_pred cccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc--------------
Confidence 532100 146899999999999999999999999999999999999886 3211
Q ss_pred hhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHHHHHHhccCCCCCCCCCCccchh
Q 011931 235 LSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERVEAAKVFKSGGFGVQSNQAVDKQ 314 (474)
Q Consensus 235 ~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
.. . . +++ .+ | .
T Consensus 240 -----------~~--~-------~-----~~~----------~~-------~---------------~------------ 250 (358)
T 4e21_A 240 -----------GQ--G-------A-----DAE----------TA-------P---------------L------------ 250 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cc--c-------c-----ccc----------cc-------c---------------c------------
Confidence 00 0 0 000 00 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHH
Q 011931 315 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 394 (474)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~ 394 (474)
+.+++|+|++|+.+|+++||+||+|+|+||+.+.++|+++|.++++. ..+.+
T Consensus 251 --------------------------~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~p~~~~~~--~~~~d 302 (358)
T 4e21_A 251 --------------------------RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPDLQEFQ--GRVSD 302 (358)
T ss_dssp ---------------------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHCTTCTTC----CCCC
T ss_pred --------------------------ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhCCChHHHH--HHHHh
Confidence 01688999999999999999999999999999999999988765432 22221
Q ss_pred HHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCchh-HHHHHHhhccCCccce
Q 011931 395 EIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDSYRRERLPA-NLVQAQRDYFGAHTYE 453 (474)
Q Consensus 395 ~~~~~~~~~~~~v~~a~~~gip~p~~~~al~-y~~~~~~~~~~~-~~i~a~rd~fG~h~~~ 453 (474)
+++ +||+|..|.+.|+|+|++++||. ||.+ +.+++++ |++||||||||+|+++
T Consensus 303 ---~g~--~r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 303 ---SGE--GRWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANRLLSAMRYEFGGHREK 357 (358)
T ss_dssp ---CSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHHHHHHHC---------
T ss_pred ---cCc--HHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHHHHHHHHHhcCCCCCC
Confidence 334 49999999999999999999996 6776 7778874 7999999999999975
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=370.31 Aligned_cols=256 Identities=22% Similarity=0.296 Sum_probs=234.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.|+||||||+|.||.+||++|+++||+|++|||++++++.+.+.+ .+.+.|++|+++. +|+||+|+|+++
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~a~s~~e~~~~---~dvv~~~l~~~~ 71 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQ 71 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTT---CSEEEECCSCHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCceeecCCchH
Confidence 367899999999999999999999999999999999999998765 5688999999998 999999999999
Q ss_pred hHHHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHH
Q 011931 86 PVDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIED 161 (474)
Q Consensus 86 ~v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ 161 (474)
++++|+. .+.+.+.+|++|||+||+.|.+++++.+.++++|++|+|+||+||+.+|+.|+ ++|+||+++++++++|
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p 151 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARP 151 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 9999985 37788999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhh
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~ 241 (474)
+|+.++.+ ++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.+++ +.+...||.++.
T Consensus 152 ~l~~~g~~-------i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~ 220 (300)
T 3obb_A 152 LFEAMGRN-------IFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEV 220 (300)
T ss_dssp HHHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHH
T ss_pred HHHHhCCC-------EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH---HhCcccchHHHh
Confidence 99999987 699999999999999999999999999999999999999 9999999987 567778898887
Q ss_pred hcccc------cccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 242 TADIF------GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 242 ~~~~l------~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.+.. ...++|.++|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 221 ~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~ 267 (300)
T 3obb_A 221 YNPWPGVMENAPASRDYSGGFMAQLMAKDLG------LAQEAAQASASSTPMG 267 (300)
T ss_dssp CCCSTTTSTTSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHHTCCCHHH
T ss_pred hccccchhhhccccccCCccchHHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 76532 11245789999999999998 8999999999999988
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=357.12 Aligned_cols=256 Identities=16% Similarity=0.234 Sum_probs=228.1
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.|..||||||+|.||.+||++|+++||+|++|||++++++++.+.+ ...+.++.|+++. +|+||+|+|++
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~---~dvvi~~l~~~ 72 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLG-------ATVVENAIDAITP---GGIVFSVLADD 72 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTT-------CEECSSGGGGCCT---TCEEEECCSSH
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CeEeCCHHHHHhc---CCceeeeccch
Confidence 3445899999999999999999999999999999999998887654 5678899999988 99999999999
Q ss_pred hhHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 85 APVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 85 ~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
.++++++ ..+.+.+.++++|||+||+.|.+++++.+.+.++|++|+|+||+|++.++..|+ ++|+||+++++++++++
T Consensus 73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~ 152 (297)
T 4gbj_A 73 AAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPI 152 (297)
T ss_dssp HHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHH
Confidence 8888776 568888999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhh
Q 011931 163 LLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g-~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~ 241 (474)
|+.++.+ ++|+| +.|+|+++|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||+++.
T Consensus 153 l~~~g~~-------i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~ 221 (297)
T 4gbj_A 153 VENFVKG-------VFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNG-ISRQSIYEML---TSTLFAAPIFQN 221 (297)
T ss_dssp HHTTCSE-------EEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTTTTCSHHHHH
T ss_pred HHHhhCC-------eEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCchhhc
Confidence 9999976 58888 5899999999999999999999999999999999 9999999987 678888999999
Q ss_pred hcccccccccCCC-cchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 242 TADIFGIKDDKGD-GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 242 ~~~~l~~~~~~~~-~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+.+.+..++ |.| +|.++.+.||++ ++.+.|++.|+|+|+.
T Consensus 222 ~~~~~~~~~-~~p~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~ 262 (297)
T 4gbj_A 222 YGKLVASNT-YEPVAFRFPLGLKDIN------LTLQTASDVNAPMPFA 262 (297)
T ss_dssp HHHHHHHTC-CCSCSSBHHHHHHHHH------HHHHHHHHTTCCCHHH
T ss_pred cCccccCCC-CCCccchhHHHHHHHH------HHHHHHHHhCCCChHH
Confidence 888776644 665 799999999998 8999999999999998
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=312.00 Aligned_cols=258 Identities=19% Similarity=0.295 Sum_probs=235.4
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...||||||||+|.||.+||.+|+++||+|++|||++++++++.+.+ +..+++++++++. +|+||+|||+
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~ 87 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKK---CKYTIAMLSD 87 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSS
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeEcCCHHHHHHh---CCEEEEEcCC
Confidence 34578999999999999999999999999999999999999887643 5678899999998 9999999999
Q ss_pred ChhHHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHH
Q 011931 84 GAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYI 159 (474)
Q Consensus 84 ~~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v 159 (474)
+.+++.++ +++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||++++++++
T Consensus 88 ~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~ 167 (310)
T 3doj_A 88 PCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEES 167 (310)
T ss_dssp HHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHH
Confidence 87899998 788888999999999999999999999999989999999999999999999999 79999999999999
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhH
Q 011931 160 EDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLI 239 (474)
Q Consensus 160 ~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~ 239 (474)
+++|+.++.+ ++++|+.|.|+++|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|+++
T Consensus 168 ~~ll~~~g~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~ 236 (310)
T 3doj_A 168 IPAFDVLGKR-------SFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG-LSSDTLLDIL---DLGAMTNPMF 236 (310)
T ss_dssp HHHHHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHH---HHSTTCCHHH
T ss_pred HHHHHHhCCC-------EEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccccHHH
Confidence 9999999976 589999999999999999999999999999999999999 9999999998 4567778888
Q ss_pred hhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 240 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+.+.+.+..+ +|.++|.++...||++ .+++.|+++|+|+|+++
T Consensus 237 ~~~~~~~~~~-~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~ 279 (310)
T 3doj_A 237 KGKGPSMNKS-SYPPAFPLKHQQKDMR------LALALGDENAVSMPVAA 279 (310)
T ss_dssp HHHHHHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred HHHhhhhhcC-CCCCCccHHHHHHHHH------HHHHHHHHcCCCChHHH
Confidence 8877666553 4788999999999997 89999999999999983
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=312.53 Aligned_cols=254 Identities=20% Similarity=0.275 Sum_probs=233.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|||||||+|.||..||.+|+++|++|++|||++++.+++.+.+ +..+++++++++. +|+||+|||++.
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~ 99 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG-------ATIHEQARAAARD---ADIVVSMLENGA 99 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CEEESSHHHHHTT---CSEEEECCSSHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC-------CEeeCCHHHHHhc---CCEEEEECCCHH
Confidence 457999999999999999999999999999999999998887653 5678899999988 999999999887
Q ss_pred hHHHHHH--HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 86 PVDETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 86 ~v~~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
+++.++. ++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++.++..|+ .+++||+++++++++++
T Consensus 100 ~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~l 179 (320)
T 4dll_A 100 VVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPL 179 (320)
T ss_dssp HHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHH
Confidence 8999987 88888999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.+ .+ ++++|+.|+|+++|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+.+.||+++.+
T Consensus 180 l~~~-~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~ 247 (320)
T 4dll_A 180 LKVF-GR-------ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGG-ADMAKVKEAI---TGGFADSRVLQLH 247 (320)
T ss_dssp HHHH-EE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHH---TTSTTCBHHHHTH
T ss_pred HHhc-CC-------EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcccccCHHHHHh
Confidence 9999 66 588999999999999999999999999999999999999 9999999987 5667789999888
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.+.+..+ +|.++|.++...||++ ++++.|+++|+|+|++
T Consensus 248 ~~~~l~~-~~~~gf~~~~~~KDl~------~~~~~a~~~g~~~p~~ 286 (320)
T 4dll_A 248 GQRMVER-DFAPRARLSIQLKDMR------NALATAQEIGFDAPIT 286 (320)
T ss_dssp HHHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHH
T ss_pred hhhhccC-CCCCcccHHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 7766654 4788999999999998 8999999999999998
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=306.38 Aligned_cols=255 Identities=18% Similarity=0.241 Sum_probs=233.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+||||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ +..+++++++++. +|+||+|||++.+
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---advvi~~v~~~~~ 70 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALG-------ARQASSPAEVCAA---CDITIAMLADPAA 70 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHHc---CCEEEEEcCCHHH
Confidence 57899999999999999999999999999999999999887754 5678899999988 9999999999878
Q ss_pred HHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++ +++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|. .+++||+++.+++++++
T Consensus 71 ~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 150 (287)
T 3pdu_A 71 AREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPA 150 (287)
T ss_dssp HHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHH
Confidence 99998 788888999999999999999999999998888999999999999999999999 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.++.+ ++++|+.|.|+++|+++|.+.+.++++++|++.++++.| ++++++.+++. .+...|++++..
T Consensus 151 l~~~g~~-------~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~s~~~~~~ 219 (287)
T 3pdu_A 151 FAALGKK-------CLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCG-LDGGQLLEVLD---AGAMANPMFKGK 219 (287)
T ss_dssp HHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHhCCC-------EEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hccccChHHHhh
Confidence 9999976 589999999999999999999999999999999999999 99999999984 566778888887
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
.+.+..+ +|.++|.++...||++ ++.+.|+++|+|+|+++
T Consensus 220 ~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~ 259 (287)
T 3pdu_A 220 GQMLLSG-EFPTSFPLKHMQKDLR------LAVELGDRLGQPLHGAA 259 (287)
T ss_dssp HHHHHHT-CCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHH
T ss_pred ccccccC-CCCCCCcHHHHHHHHH------HHHHHHHHcCCCChHHH
Confidence 7766654 4788999999999987 89999999999999993
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=304.22 Aligned_cols=254 Identities=17% Similarity=0.265 Sum_probs=233.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|.||.++|.+|+++||+|++|||++++.+++.+.+ +..+++++++++. +|+||+|||++.++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~~ 71 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG-------AERAATPCEVVES---CPVTFAMLADPAAA 71 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999998887653 5678899999988 99999999987789
Q ss_pred HHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 88 DETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 88 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
+.++ +++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++.+++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pef_A 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGF 151 (287)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9999 888899999999999999999999999999989999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (474)
+.++.+ ++++|+.|.++.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|++++...
T Consensus 152 ~~~g~~-------~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~~ 220 (287)
T 3pef_A 152 EKMGKK-------IIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAG-LATDAILDVI---GAGAMANPMFALKG 220 (287)
T ss_dssp HHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HHSTTCCHHHHHHH
T ss_pred HHhCCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccccHHHHHHh
Confidence 999976 588999999999999999999999999999999999999 9999999998 45667789888887
Q ss_pred ccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 244 ~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+.+..+ +|.++|.++...||+. ++++.|+++|+|+|+++
T Consensus 221 ~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~ 259 (287)
T 3pef_A 221 GLIRDR-NFAPAFPLKHMQKDLR------LAVALGDRVGQPLVASA 259 (287)
T ss_dssp HHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHH
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHH
Confidence 766654 4788999999999987 89999999999999993
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=305.93 Aligned_cols=257 Identities=21% Similarity=0.268 Sum_probs=231.1
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp 82 (474)
..++|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ... +++++++++. +|+||+|||
T Consensus 4 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~e~~~~---aDvvi~~vp 73 (303)
T 3g0o_A 4 TGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG-------ACGAAASAREFAGV---VDALVILVV 73 (303)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEESSSTTTTTT---CSEEEECCS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-------CccccCCHHHHHhc---CCEEEEECC
Confidence 34567999999999999999999999999999999999999888754 334 7788888887 999999999
Q ss_pred CChhHHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHH
Q 011931 83 AGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~ 158 (474)
++..++.++ +++.+.++++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++.+++
T Consensus 74 ~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~ 153 (303)
T 3g0o_A 74 NAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTR 153 (303)
T ss_dssp SHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHH
T ss_pred CHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHH
Confidence 987888888 778888999999999999999999999988888899999999999999999999 8999999999999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhh
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSF 237 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~ 237 (474)
++++|+.++.+ ++++|+ .|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|+
T Consensus 154 ~~~ll~~~g~~-------~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~ 222 (303)
T 3g0o_A 154 LKPVLDAVASN-------VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG-IPLDVMYDVV---THAAGNSW 222 (303)
T ss_dssp HHHHHHHHEEE-------EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCH
T ss_pred HHHHHHHHCCC-------EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccCCH
Confidence 99999999976 588998 899999999999999999999999999999999 9999999997 55677888
Q ss_pred hHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 238 LIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+++...+.+..+ +|.++|.++...||++ ++++.|+++|+|+|++
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~kD~~------~~~~~a~~~g~~~p~~ 266 (303)
T 3g0o_A 223 MFENRMQHVVDG-DYTPRSAVDIFVKDLG------LVADTAKALRFPLPLA 266 (303)
T ss_dssp HHHHHHHHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHH
T ss_pred HHHhhhHHHhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 888876655543 4788899999999987 8999999999999999
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=303.67 Aligned_cols=251 Identities=18% Similarity=0.202 Sum_probs=225.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|||||||+|.||.+||.+|+++||+|++|||++++++++.+.+ +..+++++++++ +|+||+|||++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~----aDvvi~~vp~~~~ 83 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAG-------ATLADSVADVAA----ADLIHITVLDDAQ 83 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTT-------CEECSSHHHHTT----SSEEEECCSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CEEcCCHHHHHh----CCEEEEECCChHH
Confidence 35899999999999999999999999999999999998887654 567788998876 8999999998888
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ 165 (474)
++++++++.+.++++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++.+++++++|+.
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKH 163 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888899999999999999999999 89999999999999999999
Q ss_pred HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH------HHHHHhhccCcchhhhH
Q 011931 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL------QNVFTEWNKGELLSFLI 239 (474)
Q Consensus 166 lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~------~~~~~~~~~~~~~s~~~ 239 (474)
++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++ .+++ +.+.+.||+.
T Consensus 164 ~g~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~~~~~i---~~~~~~s~~~ 232 (296)
T 3qha_A 164 WAAV-------VIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG-LDLQALGRVVRHTDAL---TGGPGAIMVR 232 (296)
T ss_dssp HEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH---HCCGGGGCCC
T ss_pred HcCC-------eEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHhhhcchHHHH---hcCcccCHHh
Confidence 9987 589999999999999999999999999999999999999 999999 5554 5667777776
Q ss_pred hhhcccccccccCCCcchH-----HHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 240 EITADIFGIKDDKGDGYLV-----DKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~-----~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+ ...++. + |.++|.+ +...||++ .+.+.|+++|+|+|+++
T Consensus 233 ~-~~~~~~--~-~~~~f~~~~~~~~~~~KD~~------~~~~~a~~~g~~~p~~~ 277 (296)
T 3qha_A 233 D-NMKDLE--P-DNFLYQPFLHTRGLGEKDLS------LALALGEAVSVDLPLAR 277 (296)
T ss_dssp S-SCSCCC--T-TSTTHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred h-chhhhh--c-CCCCCchhhhhhHHHHHHHH------HHHHHHHHcCCCChHHH
Confidence 6 333333 2 6788998 99999987 88999999999999993
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=289.32 Aligned_cols=250 Identities=14% Similarity=0.149 Sum_probs=219.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ +..+.+++++++. +|+||+|||++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~ 77 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG-------AHLCESVKAALSA---SPATIFVLLDNH 77 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------CEECSSHHHHHHH---SSEEEECCSSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEeCCHH
Confidence 467999999999999999999999999999999999999888754 4567899999998 999999999987
Q ss_pred hHHHHHH--HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 86 PVDETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 86 ~v~~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
+++.++. .+.+ +.+|++|||+||+.|..++++.+.+.++|++|+++||+|+++.+..+. ++++||+++++++++++
T Consensus 78 ~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~l 156 (306)
T 3l6d_A 78 ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRAL 156 (306)
T ss_dssp HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHH
T ss_pred HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHH
Confidence 7898886 5544 579999999999999999999999999999999999999987776665 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEe--CC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc--chhh
Q 011931 163 LLKVAAQVPDSGPCVTYV--SK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGE--LLSF 237 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~--g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~--~~s~ 237 (474)
|+.++.+ ++++ |+ .|+|+.+| .+.++.+++++|++.++++.| +|++++.+++. .+. +.|+
T Consensus 157 l~~lg~~-------~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~~---~~~~~~~s~ 221 (306)
T 3l6d_A 157 LEGLAGH-------TVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLL---ETSRFFVAD 221 (306)
T ss_dssp HHTTCSE-------EEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HHHHHHHHH
T ss_pred HHHhcCC-------EEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---HhhhhcccH
Confidence 9999765 5899 87 79999999 566788999999999999999 99999999984 332 5788
Q ss_pred hHhhhcccccccccCCCc-chHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 238 LIEITADIFGIKDDKGDG-YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 238 ~~~~~~~~l~~~~~~~~~-~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+++.+.+.+..+ +|.++ |.++...||++ ++++.|++.|+|+|++
T Consensus 222 ~~~~~~~~~~~~-~~~~~~~~~~~~~KDl~------~~~~~a~~~g~~~p~~ 266 (306)
T 3l6d_A 222 ALEEAVRRLETQ-DFKGDQARLDVHADAFA------HIAQSLHAQGVWTPVF 266 (306)
T ss_dssp HHHHHHHHHHHT-CCCTTSSBHHHHHHHHH------HHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHhcC-CCCCCcccHHHHHHHHH------HHHHHHHHcCCCchHH
Confidence 888877666554 47764 78999999997 8999999999999999
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=276.04 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=205.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC--hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|||||||+|.||.+||.+|+++|| +|++|||+ +++.+.+.+.+ +..+++++++++. +|+||+|||
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp 92 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG-------VSCKASVAEVAGE---CDVIFSLVT 92 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTT-------CEECSCHHHHHHH---CSEEEECSC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCC-------CEEeCCHHHHHhc---CCEEEEecC
Confidence 46799999999999999999999999 99999997 57777666543 5677899999988 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEecCCCCCcccccCCC-ccccCCCHHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYI 159 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v 159 (474)
++. ...++.++.+.+.++++|||+||+.|.+++++.+.+.++ |++|+++|++|++..+ .|. ++++||+++ +++
T Consensus 93 ~~~-~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~ 168 (312)
T 3qsg_A 93 AQA-ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRF 168 (312)
T ss_dssp TTT-HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHH
T ss_pred chh-HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHH
Confidence 985 445778999999999999999999999999999988888 9999999999976554 566 889999877 899
Q ss_pred HHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhh
Q 011931 160 EDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFL 238 (474)
Q Consensus 160 ~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~ 238 (474)
+++|+.+|.+ ++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +++ ++.+.+. .+. .++.
T Consensus 169 ~~ll~~~g~~-------~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~-~~~~~l~---~~~-~~~~ 235 (312)
T 3qsg_A 169 QAAFTLYGCR-------IEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG-LAD-RVLASLD---ASF-PEHH 235 (312)
T ss_dssp HHHHHTTTCE-------EEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHH-HHHHHHH---HHS-GGGT
T ss_pred HHHHHHhCCC-------eEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH-HHHHHHH---hcC-Cchh
Confidence 9999999976 588998 899999999999999999999999999999999 998 5666663 332 2444
Q ss_pred HhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 239 IEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
++.+.+.+..+ +|.++|.+ .||++ .+++.|++.|+++|++
T Consensus 236 ~~~~~~~~~~~-~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~ 275 (312)
T 3qsg_A 236 LRDLALYLVER-NLEHADRR---AHELG------EVAATLCSVGVEPLVA 275 (312)
T ss_dssp HHHHHHHHHHH-HHHHHHHH---HHHHH------HHHHHHHHTTCCCHHH
T ss_pred HHHhhhHhhcC-CCCcccch---HHHHH------HHHHHHHHcCCCcHHH
Confidence 44444444433 36666665 57776 7899999999999998
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=267.57 Aligned_cols=257 Identities=19% Similarity=0.281 Sum_probs=220.7
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.++|+|+|||+|.||..++..|.++|++|.+|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|++
T Consensus 3 ~M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~v~~~ 72 (299)
T 1vpd_A 3 AMTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNS 72 (299)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSH
T ss_pred cccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCH
Confidence 3457999999999999999999999999999999999988877653 4567789898888 99999999987
Q ss_pred hhHHHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 85 APVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 85 ~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
.+++.++ +++.+.+.++++||+++++.+.+.+++.+.+.+.|++|+++|+++++..+..+. .+++||+++.++.++
T Consensus 73 ~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (299)
T 1vpd_A 73 PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYY 152 (299)
T ss_dssp HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHH
Confidence 7888888 678888999999999999998878888888888899999999999888877777 788889999999999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHh
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~ 240 (474)
++|+.++.+ ++++++.|++.++|+++|.+.+.++++++|++.++++.| ++++++.+++ ..+...++.+.
T Consensus 153 ~ll~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~ 221 (299)
T 1vpd_A 153 DLMKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLD 221 (299)
T ss_dssp HHHHTTEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHH
T ss_pred HHHHHHcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HccCCCCHHHH
Confidence 999999976 578888999999999999999999999999999999999 9999998886 45555566665
Q ss_pred hhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
...+.+.. +++.+++.++.+.+|++ ++++.|+++|+|+|+.+
T Consensus 222 ~~~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~ 263 (299)
T 1vpd_A 222 AKAPMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAQLPLTA 263 (299)
T ss_dssp HHHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHH
T ss_pred HhhhHhhc-CCCCCCCChHHHHHHHH------HHHHHHHHcCCCChHHH
Confidence 44444433 33677889999888876 89999999999999983
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=272.37 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=197.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCCh-------HHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTT-------SKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRV 76 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~-------~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dv 76 (474)
++|+|||||+|.||.+||.+|+++| ++|++|||++ +..+++.+. ++ ++ +++++++. +|+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~-------g~--~~~s~~e~~~~---aDv 90 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAEL-------GV--EPLDDVAGIAC---ADV 90 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHT-------TC--EEESSGGGGGG---CSE
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHC-------CC--CCCCHHHHHhc---CCE
Confidence 4578999999999999999999999 9999999998 344443332 13 56 88888888 999
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHH
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 155 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~ 155 (474)
||+|||++.. ..++.++.+.++++++|||+||+.|.+++++.+.+.++|++|+++|++|+ ..+..|. ++++||+++
T Consensus 91 Vi~avp~~~~-~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~- 167 (317)
T 4ezb_A 91 VLSLVVGAAT-KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRA- 167 (317)
T ss_dssp EEECCCGGGH-HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTH-
T ss_pred EEEecCCHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChH-
Confidence 9999999754 45668899999999999999999999999999999889999999999995 4556666 889999877
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc-
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGE- 233 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~- 233 (474)
++++++|+.++.+ ++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| ++++ +.+.+. .+.
T Consensus 168 -~~~~~ll~~~g~~-------v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~G-id~~-~~~~l~---~~~~ 234 (317)
T 4ezb_A 168 -VEVAERLNALGMN-------LEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-VTER-ILDSVQ---ETFP 234 (317)
T ss_dssp -HHHHHHHHTTTCE-------EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---HHST
T ss_pred -HHHHHHHHHhCCC-------eEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH-HHHHHH---hcCc
Confidence 8999999999976 589998 899999999999999999999999999999999 9995 444442 221
Q ss_pred chhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 234 LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 234 ~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
..+| ..+.+.+..+ +|.++|. +.||++ .+++.|+++|+|+|+++
T Consensus 235 ~~~~--~~~~~~~~~~-~~~~g~~---~~KDl~------~~~~~a~~~g~~~pl~~ 278 (317)
T 4ezb_A 235 GLDW--RDVADYYLSR-TFEHGAR---RVTEMT------EAAETIESFGLNAPMSR 278 (317)
T ss_dssp TSCH--HHHHHHHHHH-HHHHHHH---HHHHHH------HHHHHHHTTTCCCHHHH
T ss_pred cccH--HHhhhhhhcC-CCCCCcc---hHHHHH------HHHHHHHHcCCCChHHH
Confidence 2233 2223333322 2555565 367776 88999999999999983
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-31 Score=260.95 Aligned_cols=255 Identities=22% Similarity=0.355 Sum_probs=221.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|||+|||+|.||..++.+|++.|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.+
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~~ 73 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-------AQACENNQKVAAA---SDIIFTSLPNAGI 73 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHHH
Confidence 46899999999999999999999999999999999988876542 4567789998888 9999999998878
Q ss_pred HHHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++. ++.+.+.++++||+++++.+.+.+++.+.+.+++++|+++|+++++..+..|. .++++|+++.++.++++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~l 153 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPV 153 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 888885 78888999999999999998888888888888899999999999987777887 78888999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.++.+ ++++++.|++.++|+++|.+.+..+++++|++.++++.| ++++++.+++. .+...++.+..+
T Consensus 154 l~~~g~~-------~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~ 222 (301)
T 3cky_A 154 LSVIGKD-------IYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCG-LKPETMQEIIG---KSSGRSYAMEAK 222 (301)
T ss_dssp HHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHH
T ss_pred HHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHh
Confidence 9999976 477899999999999999999999999999999999999 99999988874 444556666555
Q ss_pred cc-cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 243 AD-IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 243 ~~-~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
.+ .+.. +++.+++.++.+.||++ ++++.++++|+|+|+.+
T Consensus 223 ~~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~ 263 (301)
T 3cky_A 223 MEKFIMS-GDFAGGFAMDLQHKDLG------LALEAGKEGNVPLPMTA 263 (301)
T ss_dssp CCCCCCT-CCCSSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHH
T ss_pred hhhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHhCCCChHHH
Confidence 54 3333 34677899999999986 89999999999999883
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=256.57 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=216.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||+|||+|.||..++.+|+++|++|++|||++++.+++.+.+ +..+.+++++++. +|+||+|+|.+.++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAG-------EQVVSSPADVAEK---ADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 5899999999999999999999999999999999988876543 5567789998888 99999999988788
Q ss_pred HHHHHH---HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 88 DETIKT---LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 88 ~~vl~~---l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
+.++.+ +.+.++++++||++++..+.+.+++.+.+.+++..|+++|+++++..+..|. .+++|++++.++.++++|
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELL 150 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHH
Confidence 888875 4456788999999888888777777777777789999999999887777888 788899999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (474)
+.+|.+ +++++..|+|+..|+++|.+.+..+.+++|++.++++.| ++++++.+++. .+...++++....
T Consensus 151 ~~~g~~-------~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~ 219 (296)
T 2gf2_A 151 GCMGSN-------VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG-LDPKLLAKILN---MSSGRCWSSDTYN 219 (296)
T ss_dssp TTTEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHSC
T ss_pred HHHcCC-------eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hCcccCHHHHhcC
Confidence 999976 478888999999999999999999999999999999999 99999999874 3445566655432
Q ss_pred c---ccc---ccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 244 D---IFG---IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 244 ~---~l~---~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
+ .+. ...++.++|.++.+.||++ ++++.|+++|+|+|+.+.
T Consensus 220 ~~~~~l~~s~~~~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~ 266 (296)
T 2gf2_A 220 PVPGVMDGVPSANNYQGGFGTTLMAKDLG------LAQDSATSTKSPILLGSL 266 (296)
T ss_dssp SSTTTCSSSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred CcccccccchhccCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH
Confidence 1 111 1134677899999998887 899999999999999833
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=259.87 Aligned_cols=255 Identities=21% Similarity=0.322 Sum_probs=218.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+||+|+|||+|.||..+|.+|++.|++|++|| ++++.+++.+.+ +..+.+++++++. +|+||+|+|.+.
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~ 70 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLG-------AVNVETARQVTEF---ADIIFIMVPDTP 70 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTT-------CBCCSSHHHHHHT---CSEEEECCSSHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEECCCHH
Confidence 46799999999999999999999999999999 988888776543 4567789998887 999999999887
Q ss_pred hHHHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHH
Q 011931 86 PVDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIED 161 (474)
Q Consensus 86 ~v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ 161 (474)
+++.++. ++.+.+.++++||+++++.+.+.+++.+.+.+++++|+++|+++++..+..|. .+++||+++.++.+++
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ 150 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKP 150 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 7888887 78888889999999999988888888888887899999999999887777888 7888999999999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhh
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEI 241 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~ 241 (474)
+|+.++.+ ++++++.|.+.++|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...++.+..
T Consensus 151 ll~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~ 219 (295)
T 1yb4_A 151 LFDILGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-ADPVRVRQAL---MGGFASSRILEV 219 (295)
T ss_dssp HHHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TSSSSCBHHHHH
T ss_pred HHHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCCCCCHHHHH
Confidence 99999976 478889999999999999999999999999999999999 9999988886 445555666654
Q ss_pred hcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 242 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
....+.. +++.+++..+.+.||++ ++++.++++|+|+|+++
T Consensus 220 ~~~~~~~-~~~~~g~~~~~~~kd~~------~~~~~a~~~g~~~p~~~ 260 (295)
T 1yb4_A 220 HGERMIN-RTFEPGFKIALHQKDLN------LALQSAKALALNLPNTA 260 (295)
T ss_dssp HHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred hhHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHH
Confidence 4444443 34678888999888886 88999999999999983
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=256.39 Aligned_cols=251 Identities=25% Similarity=0.299 Sum_probs=215.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
||+|+|||+|.||..++.+|++ |++|++|||++++.+.+.+.+ +..++ +++++.. +|+||+|+|++.+
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g-------~~~~~-~~~~~~~---~D~vi~~v~~~~~ 68 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEF-------GSEAV-PLERVAE---ARVIFTCLPTTRE 68 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHH-------CCEEC-CGGGGGG---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCC-------CcccC-HHHHHhC---CCEEEEeCCChHH
Confidence 4689999999999999999999 999999999999988887654 23344 6676666 9999999998767
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ 165 (474)
++.+++++.+.+.++++||++|+..+.+.+++.+.+.++|++|+++|+++++..+..|. .+++|++++.++.++++| .
T Consensus 69 ~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~ 147 (289)
T 2cvz_A 69 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-A 147 (289)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-T
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-h
Confidence 88899999888999999999999988888888888877789999999999888787888 788889999999999999 9
Q ss_pred HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc-
Q 011931 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD- 244 (474)
Q Consensus 166 lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~- 244 (474)
++.+ ++++++.+.+.++|+++|.+.+.++++++|++.++++.| ++++++.+++ ..+...+++++.+.+
T Consensus 148 ~g~~-------~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~~ 216 (289)
T 2cvz_A 148 YAKK-------VVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQ 216 (289)
T ss_dssp TEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHH
T ss_pred hcCC-------eEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cCHHHHHHHH---HccCCCCHHHHHhccc
Confidence 9875 478888899999999999999999999999999999999 9999988887 445555666665544
Q ss_pred cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 245 ~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.+.. +++.+++.++.+.||++ ++++.++++|+|+|+.
T Consensus 217 ~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~ 253 (289)
T 2cvz_A 217 RVLT-RAFPKTFALGLLVKDLG------IAMGVLDGEKAPSPLL 253 (289)
T ss_dssp HTTT-SCCCCSSBHHHHHHHHH------HHHHHHTTTCCCCHHH
T ss_pred hhhc-CCCCCCcChHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 3333 34677889999999886 8999999999999988
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=252.30 Aligned_cols=255 Identities=16% Similarity=0.266 Sum_probs=217.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|+|+|||+|.||..+|.+|++.|++|++|||++++.+++.+.+ +..+.+++++++. +|+||+|+|++.+
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~DvVi~av~~~~~ 99 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG-------ARLGRTPAEVVST---CDITFACVSDPKA 99 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCEEEEeCCCHHH
Confidence 37899999999999999999999999999999999988877643 4566788888887 9999999997778
Q ss_pred HHHHHHHH---HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETIKTL---SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~~l---~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++.++ .+.+.++++||+++|..+...+++.+.+..++..|+++|+++++..+..|. .++++|+++.++.++++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~l 179 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSC 179 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHH
Confidence 88888654 477889999999999988888888888877889999999999988888888 67778899999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (474)
|+.+|.+ ++++++.+.+...|++.|.+....+.+++|++.++++.| ++++++.+++. .+...++.+...
T Consensus 180 l~~~g~~-------~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G-~~~~~~~~~~~---~~~~~s~~~~~~ 248 (316)
T 2uyy_A 180 FQAMGKT-------SFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG-QSQQTLLDILN---QGQLASIFLDQK 248 (316)
T ss_dssp HHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHh
Confidence 9999976 478888999999999999999999999999999999999 99999988874 444455555443
Q ss_pred cccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
.+.+.. +++.+++.++.+.+|++ ++++.+++.|+|+|+.+
T Consensus 249 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~ 288 (316)
T 2uyy_A 249 CQNILQ-GNFKPDFYLKYIQKDLR------LAIALGDAVNHPTPMAA 288 (316)
T ss_dssp HHHHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred hHHhhc-CCCCCCCcHHHHHHHHH------HHHHHHHHhCCCChHHH
Confidence 333333 33778889999888876 89999999999999983
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=254.26 Aligned_cols=252 Identities=17% Similarity=0.181 Sum_probs=202.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 72 (474)
.+|+|||+|.||.+||.+|+++||+|++||+++++++.+.+... ..+ +++.+++++++++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g--~l~~ttd~~ea~~~-- 84 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAG--RLSFTTDLAEGVKD-- 84 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHTT--
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccC--CEEEECCHHHHHhc--
Confidence 58999999999999999999999999999999999998875210 011 36678899998887
Q ss_pred CCcEEEEecCCCh----------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCccccc
Q 011931 73 KPRVIIMLVKAGA----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGAR 142 (474)
Q Consensus 73 ~~dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~ 142 (474)
||+||+|||++. .++++++++.+.+++|++||+.||+.|.+++++.+.+.+.+.. .+.++.++|+.++
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~ 162 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLR 162 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCC
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccc
Confidence 999999999874 5899999999999999999999999999999998888776543 5566777777777
Q ss_pred CCC---------ccccCCC-HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 143 HGP---------SLMPGGS-FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK 212 (474)
Q Consensus 143 ~G~---------~i~~gg~-~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~ 212 (474)
+|. .+++|++ +++.++++++|+.++.+. ..++++++.++|+++|+++|.+.+..+++++|+..+|+
T Consensus 163 eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 238 (446)
T 4a7p_A 163 EGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQ----SAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCE 238 (446)
T ss_dssp TTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC---------CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCC----CeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 5788885 889999999998876430 01478889999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 213 SVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 213 ~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+.| +|++++.+++. ... ++....+. .+++|...-+.||.. +.+..|+++|+++|+++
T Consensus 239 ~~G-iD~~~v~~~~~---~~~------rig~~~l~----pg~G~gg~c~~KD~~------~l~~~A~~~g~~~~l~~ 295 (446)
T 4a7p_A 239 QVG-ADVQEVSRGIG---MDN------RIGGKFLH----AGPGYGGSCFPKDTL------ALMKTAADNETPLRIVE 295 (446)
T ss_dssp HTT-CCHHHHHHHHH---TST------TC---CCC----CCSCCCTTTHHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred HcC-CCHHHHHHHHh---cCC------CCCCccCC----CCCCcchhhHHHHHH------HHHHHHHhcCCCCHHHH
Confidence 999 99999999873 221 01011111 234566667788875 78889999999999993
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=248.44 Aligned_cols=253 Identities=16% Similarity=0.124 Sum_probs=201.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l 71 (474)
+|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+... ..+ ++..+++++++++.
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~--~l~~t~d~~ea~~~- 78 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAG--RLRFGTEIEQAVPE- 78 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTT--SEEEESCHHHHGGG-
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccC--cEEEECCHHHHHhc-
Confidence 379999999999999999999999999999999999988876210 011 35677889998887
Q ss_pred CCCcEEEEecCCCh---------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe---EEecCCCCCcc
Q 011931 72 QKPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL---YLGMGVSGGEE 139 (474)
Q Consensus 72 ~~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~---~v~~pvsgg~~ 139 (474)
+|+||+|||++. .++++++++.+.++++++||+.||+.|.+++++.+.+.+.+.. .++.++.++|+
T Consensus 79 --aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe 156 (450)
T 3gg2_A 79 --ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPE 156 (450)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred --CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechh
Confidence 999999999874 7899999999999999999999999999999888777654211 24456666666
Q ss_pred cccCCC---------ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 140 GARHGP---------SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYD 209 (474)
Q Consensus 140 ~a~~G~---------~i~~gg-~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~ 209 (474)
.+++|. .+++|| ++++.++++++|+.++.+ ..++++++.+.++++|+++|.+.+..+++++|+..
T Consensus 157 ~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~-----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 231 (450)
T 3gg2_A 157 FLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLN-----NFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231 (450)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCS-----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcC-----CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665 367786 589999999999988752 11367888999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 210 VLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 210 l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
+|++.| +|++++.+++. ... ++....+. .+++|...-+.||.. +.+..|+++|+++|++.
T Consensus 232 l~~~~G-id~~~v~~~~~---~~~------rig~~~~~----pg~G~gg~c~~KD~~------~l~~~a~~~g~~~~l~~ 291 (450)
T 3gg2_A 232 LCERVG-ADVSMVRLGIG---SDS------RIGSKFLY----PGCGYGGSCFPKDVK------ALIRTAEDNGYRMEVLE 291 (450)
T ss_dssp HHHHHT-CCHHHHHHHHH---TST------TTCSSSCC----CSSCCCSSHHHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred HHHHhC-CCHHHHHHHHc---CCC------CCCcccCC----CCCCCCcccHHhhHH------HHHHHHHHcCCCcHHHH
Confidence 999999 99999999873 221 01001111 123455566778875 78889999999999993
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=244.70 Aligned_cols=250 Identities=13% Similarity=0.059 Sum_probs=197.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CC-cEEEEeCChH----HHHHHHHhhh-----------------hcCCCCccccC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTS----KVDETVERAK-----------------KEGDLPLFGFR 62 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~----~~~~l~~~~~-----------------~~~~~~~~~~~ 62 (474)
++|||+|||+|.||.++|.+|+++ || +|++||++++ +++.+.+... ..+ ++..++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g--~l~~tt 94 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAG--KFECTP 94 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTT--CEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccC--CeEEeC
Confidence 468999999999999999999999 99 9999999999 8888764210 011 355555
Q ss_pred CHHHHHhhcCCCcEEEEecCCCh-----------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHH--HcC---
Q 011931 63 DPESFVNSIQKPRVIIMLVKAGA-----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA--ELG--- 126 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g--- 126 (474)
+ .++++. +|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+. ..|
T Consensus 95 d-~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 95 D-FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp C-GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred c-HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCc
Confidence 6 566676 999999999873 26667789999999999999999999999998876432 344
Q ss_pred ---CeEEecCCCCCcccccCC----CccccCCCHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHHHHHHHHHHHHH
Q 011931 127 ---LLYLGMGVSGGEEGARHG----PSLMPGGSFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEY 198 (474)
Q Consensus 127 ---~~~v~~pvsgg~~~a~~G----~~i~~gg~~~~~~~v~~ll~~l-g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~ 198 (474)
+.++++|.+..+..+..+ +.++.|++++.+++++++|+.+ +.. ++++++.++|+++|+++|.+.+
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~-------~~~~~~~~~aE~~Kl~~N~~~a 243 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVG-------QVIPMSATAAEVTKTAENTFRD 243 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSC-------CEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCC-------eEEeCCHHHHHHHHHHHHHHHH
Confidence 478899988776554332 2688899999999999999999 654 4888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcc--hHHHHhhhcCCCccHHHHHH
Q 011931 199 GDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQ 276 (474)
Q Consensus 199 ~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~--~~~~i~~~~~~k~tg~~~~~ 276 (474)
..+++++|+..+|++.| +|.+++.+++. .. +.+++.. ..|.|+| .-.-+.||.. ..+.
T Consensus 244 ~~Ia~~nE~~~l~e~~G-iD~~~v~~~~~---~~----~~~ri~~------~~~~PG~G~GG~c~~KD~~------~l~~ 303 (478)
T 3g79_A 244 LQIAAINQLALYCEAMG-INVYDVRTGVD---SL----KGEGITR------AVLWPGAGVGGHCLTKDTY------HLER 303 (478)
T ss_dssp HHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TS----CCSSSCC------CCCCCCSCCCSSHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHC---CC----chhhhcc------ccCCCCCCcchhhHHHHHH------HHHH
Confidence 99999999999999999 99999999873 21 1112211 2244544 3345777775 7888
Q ss_pred HHHHcCCC-------cccH
Q 011931 277 QAADLSVA-------APTI 288 (474)
Q Consensus 277 ~a~~~gv~-------~p~~ 288 (474)
.|+++|++ .|++
T Consensus 304 ~a~~~g~~~~~~~~~~~li 322 (478)
T 3g79_A 304 GVKIGRGELDYPEGADSIY 322 (478)
T ss_dssp HHTTSSCCCCCCSSCCCHH
T ss_pred HHHHcCCCcccccchhHHH
Confidence 99999988 6777
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=237.94 Aligned_cols=208 Identities=13% Similarity=0.121 Sum_probs=175.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-----------hcCCCCccccCCHHHHHhhcCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------KEGDLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-----------~~~~~~~~~~~s~~e~~~~l~~~ 74 (474)
.+|||+|||+|.||.++|..|++ ||+|++||+++++++.+.+... ..+..+++.+++++++++. +
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~---a 110 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN---A 110 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT---C
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC---C
Confidence 46899999999999999999998 9999999999999988765210 0000036778888888887 9
Q ss_pred cEEEEecCCCh----------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCC
Q 011931 75 RVIIMLVKAGA----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHG 144 (474)
Q Consensus 75 dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G 144 (474)
|+||+|||++. .++++++++.+ +++|++||+.||+.|.+++++.+.+.+.+ +..+|+++++..+..+
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~~~ 187 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRALYD 187 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHHHH
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhhhc
Confidence 99999999872 58888899999 99999999999999999999998886654 4459999998777554
Q ss_pred C----ccccCCCHHHHHHHHHHHHH--HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011931 145 P----SLMPGGSFEAYKYIEDILLK--VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (474)
Q Consensus 145 ~----~i~~gg~~~~~~~v~~ll~~--lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~ 218 (474)
. .+++||+++..+++.++|.. ++.. ..+++++.++|+++|+++|.+.+..+++++|+..+|++.| +|
T Consensus 188 ~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~------~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~G-iD 260 (432)
T 3pid_A 188 NLHPSRIVIGERSARAERFADLLKEGAIKQD------IPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQG-LN 260 (432)
T ss_dssp HHSCSCEEESSCSHHHHHHHHHHHHHCSSSS------CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred ccCCceEEecCCHHHHHHHHHHHHhhhccCC------CeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 2 68999999999999999987 3322 1256678999999999999999999999999999999999 99
Q ss_pred HHHHHHHHH
Q 011931 219 NEELQNVFT 227 (474)
Q Consensus 219 ~~~~~~~~~ 227 (474)
.+++.+++.
T Consensus 261 ~~~v~~~~~ 269 (432)
T 3pid_A 261 SKQIIEGVC 269 (432)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999873
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=221.45 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=186.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR--TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|||+|||+|.||..||.+|+++||+|++||| ++++.+++.+.+ +. .+++++++. +|+||+|||+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~---aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYS---CPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHT---SSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhc---CCEEEEECCCHH
Confidence 5899999999999999999999999999999 777777776543 33 677888877 999999999975
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (474)
.++. +.++.+.+++ +|||++++.+.+.+++.+.+.+.| |+++|+++++..+..|..++++|+.+ +.+++ |+.
T Consensus 69 ~~~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~ 140 (264)
T 1i36_A 69 ALGA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNR 140 (264)
T ss_dssp HHHH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGG
T ss_pred HHHH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHH
Confidence 5555 4677777765 999999998888878887776666 89999999988777777777788765 78888 999
Q ss_pred HhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011931 166 VAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (474)
Q Consensus 166 lg~~~~~~~~~~~~~g~-~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (474)
+|.+ ++++++ .|.+.++|+++|.+.+.++.+++|++.++++.| ++++ +.+++. .+...+++. .. +
T Consensus 141 ~g~~-------~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G-~~~~-~~~~~~---~~~g~~~~~-~~-~ 206 (264)
T 1i36_A 141 YGLN-------IEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED-VLEMLE---YTEGNDFRE-SA-I 206 (264)
T ss_dssp GTCE-------EEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---TTSCSSTHH-HH-H
T ss_pred cCCe-------eEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHH-HHHHHH---HhcCccHHH-HH-H
Confidence 9865 578887 799999999999999999999999999999999 9986 666653 322223332 22 2
Q ss_pred cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 245 ~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
.+..+ ++.+++. ..++++ .+++.++++ +|+|+++.
T Consensus 207 ~~~~~-~~~~g~~---~~~~~~------~~~~~a~~~-v~~p~~~~ 241 (264)
T 1i36_A 207 SRLKS-SCIHARR---RYEEMK------EVQDMLAEV-IDPVMPTC 241 (264)
T ss_dssp HHHHH-HHHTHHH---HHHHHH------HHHHHHHTT-SCCSHHHH
T ss_pred HHhcC-CCCcchh---hHHHHH------HHHHHHHHh-cCchHHHH
Confidence 22222 2455554 345554 688999999 99999843
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=226.46 Aligned_cols=202 Identities=12% Similarity=0.151 Sum_probs=168.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~~~~~~~~~~s~~e~~~~l~ 72 (474)
.|..|||+|.||.+||.+|+++||+|++||+++++++.+.+.... .+ ++..+++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g--~l~~ttd-------~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSG--KLKVSTT-------PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESS-------CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccC--ceEEeCc-------hh
Confidence 479999999999999999999999999999999999998753210 00 1222222 23
Q ss_pred CCcEEEEecCCCh-----------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH-cC------CeEEecCC
Q 011931 73 KPRVIIMLVKAGA-----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE-LG------LLYLGMGV 134 (474)
Q Consensus 73 ~~dvIil~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g------~~~v~~pv 134 (474)
.+|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+.+ .| +.++++|.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 4999999999985 267777899999999999999999999999998876544 45 36888997
Q ss_pred CCCcccccCC---C-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 135 SGGEEGARHG---P-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (474)
Q Consensus 135 sgg~~~a~~G---~-~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l 210 (474)
+..+..+.++ + .++.|+++++.++++++|+.++.. ++++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~-------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l 235 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQG-------EMIETDARTAEMSKLMENTYRDVNIALANELTKI 235 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCS-------CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCC-------cEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765544332 3 688889999999999999999865 3778899999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 011931 211 LKSVGKLTNEELQNVF 226 (474)
Q Consensus 211 ~~~~G~l~~~~~~~~~ 226 (474)
|++.| +|.+++.+++
T Consensus 236 ~e~~G-iD~~~v~~~~ 250 (431)
T 3ojo_A 236 CNNLN-INVLDVIEMA 250 (431)
T ss_dssp HHHTT-CCHHHHHHHH
T ss_pred HHHcC-CCHHHHHHHH
Confidence 99999 9999999987
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=231.60 Aligned_cols=248 Identities=11% Similarity=0.095 Sum_probs=194.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhh------------hhcCCCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERA------------KKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~------------~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
||||+|||+|.||.++|.+|+++ |++|++|||++++++.+.+.. ......++..+++++++++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~-- 82 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE-- 82 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH--
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc--
Confidence 57999999999999999999999 899999999999988753210 00000035667788888888
Q ss_pred CCcEEEEecCCChh--------------HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 73 KPRVIIMLVKAGAP--------------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 73 ~~dvIil~vp~~~~--------------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+|+||+|||++.. +.++++++.+.+.++++||++||+.+.+++++.+.+++.+..+++.+++++|
T Consensus 83 -aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~P 161 (467)
T 2q3e_A 83 -ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP 161 (467)
T ss_dssp -CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred -CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCH
Confidence 9999999998753 5677788989899999999999999999988888887776556777888888
Q ss_pred ccccCCC-c--------cccCC-----CHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011931 139 EGARHGP-S--------LMPGG-----SFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQL 203 (474)
Q Consensus 139 ~~a~~G~-~--------i~~gg-----~~~~~~~v~~ll~~l-g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~ 203 (474)
+.+..|. . +++|| ++++.+.++++|+.+ +.. ++++++.+.++++|++.|.+.+..+++
T Consensus 162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~-------~~~~~~~~~ae~~Kl~~N~~~a~~ia~ 234 (467)
T 2q3e_A 162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPRE-------KILTTNTWSSELSKLAANAFLAQRISS 234 (467)
T ss_dssp CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGG-------GEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCC-------eEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887 3 67888 788899999999998 544 478888999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCC
Q 011931 204 IAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSV 283 (474)
Q Consensus 204 i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv 283 (474)
++|+..++++.| ++.+++.+++..+.. ..+ ..+.. +++|.-.-+.||.. +....|+++|+
T Consensus 235 ~nE~~~l~~~~G-id~~~v~~~~~~~~~--~~~-------~~~~p----g~g~gg~c~~kD~~------~l~~~a~~~g~ 294 (467)
T 2q3e_A 235 INSISALCEATG-ADVEEVATAIGMDQR--IGN-------KFLKA----SVGFGGSCFQKDVL------NLVYLCEALNL 294 (467)
T ss_dssp HHHHHHHHHHHT-CCHHHHHHHHHTSTT--TCS-------SSCCC----CSCCCSSSHHHHHH------HHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-cCHHHHHHHHcCCCC--CCc-------cccCC----CCCCCCccHHHHHH------HHHHHHHHcCC
Confidence 999999999999 999999998743211 111 11111 11122233456665 67788999998
Q ss_pred C
Q 011931 284 A 284 (474)
Q Consensus 284 ~ 284 (474)
+
T Consensus 295 ~ 295 (467)
T 2q3e_A 295 P 295 (467)
T ss_dssp H
T ss_pred c
Confidence 7
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=230.80 Aligned_cols=251 Identities=16% Similarity=0.092 Sum_probs=194.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cCCCCccccCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~~~~~~~~~~s~~e~~~~l 71 (474)
.|||+|||+|.||.++|..|+++||+|++||+++++++.+.+.+.. .+ ++..+++++++++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~--~l~~ttd~~~a~~~- 84 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAG--RLRFSTDIEAAVAH- 84 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEECCHHHHHHH-
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccC--CEEEECCHHHHhhc-
Confidence 4799999999999999999999999999999999999988754200 00 35667788888887
Q ss_pred CCCcEEEEecCCC---------hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc---CCeE-EecCCCCCc
Q 011931 72 QKPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL---GLLY-LGMGVSGGE 138 (474)
Q Consensus 72 ~~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~---g~~~-v~~pvsgg~ 138 (474)
+|+||+|||++ ..++++++++.+.++++++||+.||+.|.+++++.+.+.+. | .| ++.++.++|
T Consensus 85 --aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~P 161 (478)
T 2y0c_A 85 --GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNP 161 (478)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECC
T ss_pred --CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEECh
Confidence 99999999986 68999999999999999999999999999988887776553 3 22 455677777
Q ss_pred ccccCCC---------ccccCCC-H----HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011931 139 EGARHGP---------SLMPGGS-F----EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLI 204 (474)
Q Consensus 139 ~~a~~G~---------~i~~gg~-~----~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i 204 (474)
+.+.+|. .++.|++ + ++.+.++++|+.+..+ ..++++++.+.+.+.|++.|.+.+..++++
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~ 236 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRN-----HERTLYMDVRSAEFTKYAANAMLATRISFM 236 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSS-----SCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhcc-----CCeEEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765 4677775 5 7889999999886631 124788889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHH--HHhhhcCCCccHHHHHHHHHHcC
Q 011931 205 AEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVD--KVLDKTGMKGTGKWTVQQAADLS 282 (474)
Q Consensus 205 ~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~--~i~~~~~~k~tg~~~~~~a~~~g 282 (474)
+|+..+|++.| ++.+++.+.+.. . + ++.. ..+.+++.+. -+.+|.. .....|+++|
T Consensus 237 nE~~~la~~~G-id~~~v~~~i~~---~---~-------rig~--~~~~pG~g~gg~c~~kD~~------~l~~~A~~~g 294 (478)
T 2y0c_A 237 NELANLADRFG-ADIEAVRRGIGS---D---P-------RIGY--HFLYAGCGYGGSCFPKDVE------ALIRTADEHG 294 (478)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHT---S---T-------TTCS--TTCCCSSCCCSSSHHHHHH------HHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHhc---C---C-------ccCc--ccCCCCcccccCcCHHHHH------HHHHHHHHcC
Confidence 99999999999 999998887631 0 0 0000 0122222211 2344543 6778999999
Q ss_pred CCcccHHH
Q 011931 283 VAAPTIEE 290 (474)
Q Consensus 283 v~~p~~~~ 290 (474)
+++|+++.
T Consensus 295 v~~pl~~~ 302 (478)
T 2y0c_A 295 QSLQILKA 302 (478)
T ss_dssp CCCHHHHH
T ss_pred CCcHHHHH
Confidence 99999843
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=231.65 Aligned_cols=251 Identities=16% Similarity=0.114 Sum_probs=190.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhh---cC---------CCCccccCCHHHHHhhc
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EG---------DLPLFGFRDPESFVNSI 71 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~---~~---------~~~~~~~~s~~e~~~~l 71 (474)
+||||+|||+|.||.++|.+|+++ ||+|++||+++++++.+.+.... .+ ..++..+++++++++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~- 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE- 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc-
Confidence 457999999999999999999998 79999999999999887642100 00 0024566788788887
Q ss_pred CCCcEEEEecCCCh--------------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH-cCCe-EEecCCC
Q 011931 72 QKPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE-LGLL-YLGMGVS 135 (474)
Q Consensus 72 ~~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g~~-~v~~pvs 135 (474)
+|+||+|||++. .++++++++.+.++++++||+.||..|.+++++.+.+++ .++. .++.++.
T Consensus 87 --aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~ 164 (481)
T 2o3j_A 87 --ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL 164 (481)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred --CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence 999999998864 388888999999999999999999999999988888877 5521 2233333
Q ss_pred CCcccccCCC---------ccccCCCH-----HHHHHHHHHHHHHhc-cCCCCCCceEEeCCchhHHHHHHHHHHHHHHH
Q 011931 136 GGEEGARHGP---------SLMPGGSF-----EAYKYIEDILLKVAA-QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD 200 (474)
Q Consensus 136 gg~~~a~~G~---------~i~~gg~~-----~~~~~v~~ll~~lg~-~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~ 200 (474)
++|+.+..|. .+++|++. ++++.++++|+.++. . ++++++.++++++|++.|.+.+..
T Consensus 165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~-------~~~~~d~~~ae~~Kl~~N~~~a~~ 237 (481)
T 2o3j_A 165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRN-------RIITTNTWSSELSKLVANAFLAQR 237 (481)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGG-------GEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCC-------eEEecCHHHHHHHHHHHHHHHHHH
Confidence 4444433332 57778754 578889999999884 4 477888999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcc--hHHHHhhhcCCCccHHHHHHHH
Q 011931 201 MQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQA 278 (474)
Q Consensus 201 ~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~--~~~~i~~~~~~k~tg~~~~~~a 278 (474)
+++++|+..+|++.| ++.+++.+++. .+. ++.. ..|.|++ ...-+.||.. +....|
T Consensus 238 ia~~nE~~~la~~~G-id~~~v~~~~~---~~~------ri~~------~~~~pg~g~gg~c~~KD~~------~l~~~A 295 (481)
T 2o3j_A 238 ISSINSISAVCEATG-AEISEVAHAVG---YDT------RIGS------KFLQASVGFGGSCFQKDVL------SLVYLC 295 (481)
T ss_dssp HHHHHHHHHHHHHHS-CCHHHHHHHHH---TST------TTCS------SSCCCCSCCCSSSHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCHHHHHHHHc---cCC------CCCC------CCCCCCCccCCccHHHHHH------HHHHHH
Confidence 999999999999999 99999999873 221 0100 1133333 3344667775 678899
Q ss_pred HHcCCC--cccH
Q 011931 279 ADLSVA--APTI 288 (474)
Q Consensus 279 ~~~gv~--~p~~ 288 (474)
+++|+| +|++
T Consensus 296 ~~~g~~~~~~l~ 307 (481)
T 2o3j_A 296 ESLNLPQVADYW 307 (481)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCCccchHH
Confidence 999999 8877
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=225.37 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=190.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~~~~~~~~~~s~~e~~~~l~ 72 (474)
|||+|||+|.||.++|..|+++||+|++||+++++++.+.+.+.. .+ ++..+++++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g--~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccC--ceEEeCCHHHHhcc--
Confidence 589999999999999999999999999999999999887652100 10 25667788888887
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHHhcccC---CCEEEecCCCCchh-HHHHHHHHHHc-CCeE-EecCCCCC
Q 011931 73 KPRVIIMLVKAGAP---------VDETIKTLSAYMEK---GDCIIDGGNEWYEN-TERREKAMAEL-GLLY-LGMGVSGG 137 (474)
Q Consensus 73 ~~dvIil~vp~~~~---------v~~vl~~l~~~l~~---g~iiId~st~~~~~-~~~~~~~l~~~-g~~~-v~~pvsgg 137 (474)
+|+||+|||++.. ++++++++.+.+++ +++||+.||..+.+ .+.+.+.+++. |..+ ++.++.++
T Consensus 77 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~ 155 (436)
T 1mv8_A 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (436)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEEC
Confidence 9999999998865 89999999999988 99999999999888 55566666654 5554 45566666
Q ss_pred cccccCCC---------ccccCCC-HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011931 138 EEGARHGP---------SLMPGGS-FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (474)
Q Consensus 138 ~~~a~~G~---------~i~~gg~-~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea 207 (474)
|+.+..|. .++.|++ +++.+.++++|+.++.+ +++++.+.++++|++.|++.+..+++++|+
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~--------v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAP--------IIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSC--------EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCC--------EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665 3667775 88899999999998853 334778999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCC--cchHHHHhhhcCCCccHHHHHHHHHHcCCCc
Q 011931 208 YDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGD--GYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 285 (474)
Q Consensus 208 ~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~--~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~ 285 (474)
..++++.| ++.+++.+++. ... .+.. .. ..+.+ +|....+.+|.. .....|+++|+++
T Consensus 228 ~~l~~~~G-id~~~v~~~~~---~~~--r~~~-------~~-~~~~pg~g~gg~~~~kD~~------~l~~~a~~~g~~~ 287 (436)
T 1mv8_A 228 GNIAKAVG-VDGREVMDVIC---QDH--KLNL-------SR-YYMRPGFAFGGSCLPKDVR------ALTYRASQLDVEH 287 (436)
T ss_dssp HHHHHHTT-SCHHHHHHHHT---TCT--TTTT-------SS-TTCSCCSCCCSSSHHHHHH------HHHHHHHHTTCCC
T ss_pred HHHHHHhC-CCHHHHHHHhc---CCC--CCCC-------cc-cCCCCcccccCcCcHhhHH------HHHHHHHHcCCCc
Confidence 99999999 99999888863 111 0000 00 01222 233334455543 6778999999999
Q ss_pred ccH
Q 011931 286 PTI 288 (474)
Q Consensus 286 p~~ 288 (474)
|++
T Consensus 288 pl~ 290 (436)
T 1mv8_A 288 PML 290 (436)
T ss_dssp TTG
T ss_pred HHH
Confidence 998
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=207.68 Aligned_cols=248 Identities=13% Similarity=0.065 Sum_probs=183.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-----------CCCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-----------GDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-----------~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|||+|||+|.||.++|.+|++ ||+|++|||++++++.+.+.+... ...++..++++++.++. +|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~---aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC---CCE
Confidence 589999999999999999999 999999999999998886543100 00023556778788877 999
Q ss_pred EEEecCCCh----------hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCccccc---C
Q 011931 77 IIMLVKAGA----------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGAR---H 143 (474)
Q Consensus 77 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~---~ 143 (474)
||+|||++. .++++++++.+ +.++++||+.||..+.+++++.+.+.+. .++.+|....+..+. .
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999999974 58999999999 9999999999999999988888766443 566777666554333 1
Q ss_pred CC-ccccCCCH-------HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011931 144 GP-SLMPGGSF-------EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (474)
Q Consensus 144 G~-~i~~gg~~-------~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G 215 (474)
.+ .+++|+++ +..+.+.++|..-+.+ ...+++.++.++++++|++.|.+.+..+++++|+..+|++.|
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~G 229 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKK----NNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRK 229 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSC----SCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhcc----CCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22 57888876 5556666666542221 011367788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCC--cchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 216 KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGD--GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~--~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
+|.+++.+++. .+. ++ .. ..+.| +|...-+.||.. +....|. |+++|++..
T Consensus 230 -id~~~v~~~~~---~~~------ri----~~--~~~~pg~g~gg~c~~kD~~------~l~~~a~--~~~~~l~~~ 282 (402)
T 1dlj_A 230 -LNSHMIIQGIS---YDD------RI----GM--HYNNPSFGYGGYSLPKDTK------QLLANYN--NIPQTLIEA 282 (402)
T ss_dssp -CCHHHHHHHHH---TST------TT----CS--SSCCCCSSCCSSHHHHHHH------HHHHHHT--TSSCSHHHH
T ss_pred -CCHHHHHHHhc---cCC------CC----Cc--CCCCCCCccCCccHHhhHH------HHHHHhc--CCChHHHHH
Confidence 99999998873 221 11 11 01223 455556777764 4445553 889998844
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=210.68 Aligned_cols=267 Identities=15% Similarity=0.112 Sum_probs=190.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---CC----CccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---DL----PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~~----~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+|||+|||+|.||+++|..|+++|++|++|||++++++.+.+.+.... +. ++..+++++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 579999999999999999999999999999999999998887643110 00 24566788888887 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHH----HHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHH
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTE----RREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFE 154 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~----~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~ 154 (474)
+||+. .++++++++.+.++++++||+++++....+. .+.+.+....+.++..|....+....... .++.+.+++
T Consensus 106 aVp~~-~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPSF-AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCHH-HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCHH-HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 99985 8999999999999999999999987655432 22333322345667778765543332223 344566899
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~~g~-----------------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l 217 (474)
..+.++++|+..+.+ ++...+ .|.+..+|+..|...+.+...++|+..++++.| .
T Consensus 185 ~~~~v~~lf~~~~~r-------v~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G-~ 256 (356)
T 3k96_A 185 FSKDLIERLHGQRFR-------VYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFG-G 256 (356)
T ss_dssp HHHHHHHHHCCSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHhCCCCee-------EEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhC-C
Confidence 999999999876665 233333 245556788899999999999999999999999 9
Q ss_pred CHHHHHHHHHhhccCcch--hhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHH----HHHHHcCCCcccHHH
Q 011931 218 TNEELQNVFTEWNKGELL--SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIEE 290 (474)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~--s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~----~~a~~~gv~~p~~~~ 290 (474)
+++++..+ .|.++ -.+.+..++..+....+..+..++.+.+.++|+-+|..++ +.|+++|+++|+++.
T Consensus 257 ~~~t~~gl-----~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~ 330 (356)
T 3k96_A 257 KQETLTGL-----AGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQ 330 (356)
T ss_dssp CHHHHTST-----TTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ChHhhccc-----chhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 99988653 12222 1111111111110001122356677778888888887766 458999999999854
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-24 Score=203.00 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=143.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH--------------HHHHHHhhhhcCCCCccccCCHHHHHhhc
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--------------VDETVERAKKEGDLPLFGFRDPESFVNSI 71 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--------------~~~l~~~~~~~~~~~~~~~~s~~e~~~~l 71 (474)
..+||||||+|.||.+||.+|+++||+|++|||++++ .+++.+.. +...+.+++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~- 90 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------PHVHLAAFADVAAG- 90 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGS------TTCEEEEHHHHHHH-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------CceeccCHHHHHhc-
Confidence 4579999999999999999999999999999999987 44443321 12346788898888
Q ss_pred CCCcEEEEecCCChhHHHHHHHH-HhcccCCCEEEecCC-----------CCchhHHHHHHHHHH--------cCCeEEe
Q 011931 72 QKPRVIIMLVKAGAPVDETIKTL-SAYMEKGDCIIDGGN-----------EWYENTERREKAMAE--------LGLLYLG 131 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl~~l-~~~l~~g~iiId~st-----------~~~~~~~~~~~~l~~--------~g~~~v~ 131 (474)
+|+||+|||+. .+.+++.++ .+.+ ++++|||+++ ..|.+.....+.+++ +++.+++
T Consensus 91 --aDvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~ 166 (245)
T 3dtt_A 91 --AELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMN 166 (245)
T ss_dssp --CSEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSC
T ss_pred --CCEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccC
Confidence 99999999986 566777777 6777 8999999994 344434344444444 3788899
Q ss_pred cCCCCCcccccCCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHH
Q 011931 132 MGVSGGEEGARHGP-SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDM 201 (474)
Q Consensus 132 ~pvsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~ 201 (474)
+|+++++..+..|+ .++++| ++++++.++++|+.+|.+. ++++|+.|+|+.+|+++|.+.....
T Consensus 167 a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~------~~~~G~~g~a~~~k~~~~~~~~l~~ 232 (245)
T 3dtt_A 167 ASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQD------VIDLGDITTARGAEMLLPVWIRLWG 232 (245)
T ss_dssp HHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCC------EEEEESGGGHHHHHTTHHHHHHHHH
T ss_pred HHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCc------eeccCcHHHHHHhhhhHHHHHHHHH
Confidence 99999998888888 677655 6999999999999999642 6899999999999999999876553
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=196.25 Aligned_cols=259 Identities=17% Similarity=0.177 Sum_probs=173.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC------CccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL------PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~------~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+||||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+...... ++. ..+..++.+.++.+|+||+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCC-EECGGGCCTTSCCCSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecce-eecchhhcccCCCCCEEEE
Confidence 357999999999999999999999999999999999998887654210000 011 1134455443335999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCC--cccccCCC-ccc--cC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGG--EEGARHGP-SLM--PG 150 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg--~~~a~~G~-~i~--~g 150 (474)
|||+. .++++++++.+.+.++++||+++++.. ..+.+.+.+.+. |..++++++++. +.....|. .+. .+
T Consensus 81 ~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 81 LTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp CSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred Eeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 99975 789999999999999999999998764 334444444332 222333334431 22233455 443 35
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Q 011931 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI---------------------EYGDMQLIAEAYD 209 (474)
Q Consensus 151 g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~---------------------~~~~~~~i~Ea~~ 209 (474)
++++..+.++++|+.++.+ +.+.++.+.+.+.|++.|.+ .....+++.|+..
T Consensus 159 ~~~~~~~~~~~ll~~~g~~-------~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~ 231 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAGLN-------PSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAA 231 (316)
T ss_dssp GGHHHHHHHHHHHHHTTCC-------EEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCC-------cEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHH
Confidence 6788899999999999865 46777899999999999964 2557788999999
Q ss_pred HHHHhCCCCH--HHHHHHHHhhccCc--chhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCc
Q 011931 210 VLKSVGKLTN--EELQNVFTEWNKGE--LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 285 (474)
Q Consensus 210 l~~~~G~l~~--~~~~~~~~~~~~~~--~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~ 285 (474)
++++.| +++ +.+.+.+....... ..++ .++..+++ ..++..+ +.+++ | +.++.|+++|+|+
T Consensus 232 la~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~~d~~------~~g~~~E-~~~~~-----~-~~~~~a~~~gv~~ 296 (316)
T 2ew2_A 232 VAEKEA-IYLDQAEVYTHIVQTYDPNGIGLHY-PSMYQDLI------KNHRLTE-IDYIN-----G-AVWRKGQKYNVAT 296 (316)
T ss_dssp HHHHTT-CCCCHHHHHHHHHHTTCTTTTTTSC-CHHHHHHT------TTCCCCS-GGGTH-----H-HHHHHHHHHTCCC
T ss_pred HHHHcC-CCCChHHHHHHHHHHhccccCCCCC-cHHHHHHH------HcCCcch-HHHHh-----h-HHHHHHHHhCCCC
Confidence 999999 986 45666664322211 1111 11112220 1112222 33333 3 6889999999999
Q ss_pred ccHH
Q 011931 286 PTIE 289 (474)
Q Consensus 286 p~~~ 289 (474)
|+.+
T Consensus 297 P~~~ 300 (316)
T 2ew2_A 297 PFCA 300 (316)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 9884
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=196.80 Aligned_cols=254 Identities=16% Similarity=0.113 Sum_probs=180.4
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh---------------hhhcCCCCccccCCHHHHH
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKKEGDLPLFGFRDPESFV 68 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~~~~~~~~~~s~~e~~ 68 (474)
+..|.+|+|||+|.||.++|..|+++||+|+++|.++++++.+.+. ....+ ++..++++++++
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai 95 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAV 95 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHH
Confidence 4567899999999999999999999999999999999998887531 11111 466788888888
Q ss_pred hhcCCCcEEEEecCCCh---------hHHHHHHHHHhccc---CCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 69 NSIQKPRVIIMLVKAGA---------PVDETIKTLSAYME---KGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~---------~v~~vl~~l~~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+. +|++|+|||++. .++++.+.+.+.++ ++++||..||++|++++++...+.+....-.+..+..
T Consensus 96 ~~---ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~ 172 (444)
T 3vtf_A 96 AA---TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVAS 172 (444)
T ss_dssp HT---SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEE
T ss_pred hc---CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeec
Confidence 87 999999998762 46777788877774 6899999999999999887654432211112233444
Q ss_pred CcccccCCC---------ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011931 137 GEEGARHGP---------SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAE 206 (474)
Q Consensus 137 g~~~a~~G~---------~i~~gg-~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~E 206 (474)
.|+..++|. .++.|+ ++.+.+.+..+++.+... ++. ....+|+++|++.|.+.+..+++++|
T Consensus 173 ~PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~-------~~~-~~~~~AE~~Kl~eN~~ravnIa~~NE 244 (444)
T 3vtf_A 173 NPEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAP-------KLV-MKPREAELVKYASNVFLALKISFANE 244 (444)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSC-------EEE-ECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCC-------EEE-echhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666664 345565 677778888888766432 333 45689999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcc
Q 011931 207 AYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAP 286 (474)
Q Consensus 207 a~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p 286 (474)
...+|++.| +|..++.+.+.. ....+ ...+.-+-.+++ + =+-+|.. .....|+++|++.+
T Consensus 245 la~ice~~G-iDv~eV~~a~~~--d~rig-------~~~l~PG~G~GG-~---CipkD~~------~L~~~a~~~g~~~~ 304 (444)
T 3vtf_A 245 VGLLAKRLG-VDTYRVFEAVGL--DKRIG-------RHYFGAGLGFGG-S---CFPKDTL------AFIRFGESLGLEMA 304 (444)
T ss_dssp HHHHHHHTT-CCHHHHHHHHHT--STTSC-------STTCCCSSCCCT-T---THHHHHH------HHHHHHHHTTCCCH
T ss_pred HHHHHHHcC-CCHHHHHHHhcc--CCCCC-------CCCCCCCCCCCC-c---ccCcCHH------HHHHHHHhcCCCHH
Confidence 999999999 999999888731 01111 011111101222 1 1233432 45577999999999
Q ss_pred cHHH
Q 011931 287 TIEE 290 (474)
Q Consensus 287 ~~~~ 290 (474)
++..
T Consensus 305 li~a 308 (444)
T 3vtf_A 305 ISKA 308 (444)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8843
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=178.52 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=166.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+||||+|||+|.||..++.+|.+.|++|.+|||++++.+++.+.. ++..+.+++++++. +|+||+|+|+ .
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~D~Vi~~v~~-~ 71 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-Q 71 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-G
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc------CCEeeCCHHHHHhc---CCEEEEEeCc-H
Confidence 467999999999999999999999999999999999998887653 14567788898887 9999999995 4
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCC--CHHHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDI 162 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~l 162 (474)
.+.+++.+ +.++++||+.+++.+.. .+.+.+ ..+.++++ ++.+.+.....|. .+++++ +++.++.++++
T Consensus 72 ~~~~v~~~----l~~~~~vv~~~~~~~~~--~l~~~~-~~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l 143 (259)
T 2ahr_A 72 LFETVLKP----LHFKQPIISMAAGISLQ--RLATFV-GQDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDL 143 (259)
T ss_dssp GHHHHHTT----SCCCSCEEECCTTCCHH--HHHHHH-CTTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHH----hccCCEEEEeCCCCCHH--HHHHhc-CCCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHH
Confidence 67776654 34788999997655432 333333 34566776 5666666666777 566766 88999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhh-hH
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMI--HNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSF-LI 239 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g~~~K~v--~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~-~~ 239 (474)
|+.+| + ++++++.....++++. .|.+.+.++..++|+ +.+.| ++++++.+++. .+...++ ++
T Consensus 144 l~~~G-~-------~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~G-l~~~~~~~~~~---~~~~~~~~~~ 208 (259)
T 2ahr_A 144 TDSFG-S-------TFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNG-IPKAKALEIVT---QTVLASASNL 208 (259)
T ss_dssp HHTTE-E-------EEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH---HHHHHHHHHH
T ss_pred HHhCC-C-------EEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH---HHHHHHHHHH
Confidence 99998 4 4788876666666653 355666677777777 67888 99999998874 3333444 33
Q ss_pred hhhc--ccccccccCCCcchHHHHhhhcCCCcc
Q 011931 240 EITA--DIFGIKDDKGDGYLVDKVLDKTGMKGT 270 (474)
Q Consensus 240 ~~~~--~~l~~~~~~~~~~~~~~i~~~~~~k~t 270 (474)
.... +.+..++.++|++.+...++++++.|.
T Consensus 209 ~~~~~~p~~l~~~~~~p~~~~~~~~~~l~~~g~ 241 (259)
T 2ahr_A 209 KTSSQSPHDFIDAICSPGGTTIAGLMELERLGL 241 (259)
T ss_dssp HHSSSCHHHHHHHHCCTTSHHHHHHHHHHHHTH
T ss_pred HhcCCCHHHHHHhCCCCChhHHHHHHHHHHCCh
Confidence 3221 222222335778888888887754333
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=185.15 Aligned_cols=186 Identities=12% Similarity=0.195 Sum_probs=138.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||.+||.+|+ +|++|++||+++++++++.+......--+++.++++++ ++. ||+||.|+|++.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~---aDlVieavpe~~~ 86 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKD---CDIVMEAVFEDLN 86 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGG---CSEEEECCCSCHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcC---CCEEEEcCcCCHH
Confidence 368999999999999999999 99999999999999988877510000002566778877 666 9999999999988
Q ss_pred HHHHH-HHHHhcccCCCEEE-ecCCCCchhHHHHHH-HHHHcCCeEEecCCCCCcccccCCC--ccccC--CCHHHHHHH
Q 011931 87 VDETI-KTLSAYMEKGDCII-DGGNEWYENTERREK-AMAELGLLYLGMGVSGGEEGARHGP--SLMPG--GSFEAYKYI 159 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~-~l~~~g~~~v~~pvsgg~~~a~~G~--~i~~g--g~~~~~~~v 159 (474)
++.++ .++.+ + ++.+++ |+||.++....+... ..+..|.||++ |+.+ ++ .++.| +++++++++
T Consensus 87 vk~~l~~~l~~-~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~ 156 (293)
T 1zej_A 87 TKVEVLREVER-L-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFV 156 (293)
T ss_dssp HHHHHHHHHHT-T-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHH
Confidence 88776 55544 4 888886 566766543222111 11124778888 5543 33 46666 489999999
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011931 160 EDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 160 ~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
+++++.+|++ ++++++. |+++|.+. .+++|++.++++ | ++++++.+++
T Consensus 157 ~~l~~~lGk~-------~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-G-v~~e~id~~~ 204 (293)
T 1zej_A 157 EGFLRELGKE-------VVVCKGQ------SLVNRFNA----AVLSEASRMIEE-G-VRAEDVDRVW 204 (293)
T ss_dssp HHHHHHTTCE-------EEEEESS------CHHHHHHH----HHHHHHHHHHHH-T-CCHHHHHHHH
T ss_pred HHHHHHcCCe-------EEEeccc------ccHHHHHH----HHHHHHHHHHHh-C-CCHHHHHHHH
Confidence 9999999976 4788754 56655543 578999999999 8 8999999987
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=182.80 Aligned_cols=198 Identities=18% Similarity=0.168 Sum_probs=152.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.+|+|+|||+|.||..++..|++.|++ |.+|||++++.+++.+.. ++..+.+++++++. +|+||+|+|+.
T Consensus 9 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~Dvvi~av~~~ 79 (266)
T 3d1l_A 9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------EAEYTTDLAEVNPY---AKLYIVSLKDS 79 (266)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------TCEEESCGGGSCSC---CSEEEECCCHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------CCceeCCHHHHhcC---CCEEEEecCHH
Confidence 357999999999999999999999999 899999999998887652 24566788887666 99999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccc-cCCCHHHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLM-PGGSFEAYKYIEDIL 163 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~-~gg~~~~~~~v~~ll 163 (474)
.++++++++.+.++++++||+++++.+.+. +.+.+...+..+..+|++|++.....+..++ .+++++.++.++++|
T Consensus 80 -~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 156 (266)
T 3d1l_A 80 -AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIA 156 (266)
T ss_dssp -HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHH
Confidence 678899999888889999999999987544 3333333345566778877654333333444 488999999999999
Q ss_pred HHHhccCCCCCCceEEeCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 164 LKVAAQVPDSGPCVTYVSKGG---SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g---~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
+.+|.+ ++++++.+ -..++|+++|.. ..+..++|+ ++++.| ++++++.+++.
T Consensus 157 ~~~g~~-------~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~G-l~~~~~~~l~~ 211 (266)
T 3d1l_A 157 STLSNR-------VYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYN-LPFDVMLPLID 211 (266)
T ss_dssp HTTCSC-------EEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTT-CCGGGGHHHHH
T ss_pred HhcCCc-------EEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcC-CCHHHHHHHHH
Confidence 999865 57888755 456789999984 345666776 568888 99999888874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=183.60 Aligned_cols=198 Identities=11% Similarity=0.120 Sum_probs=159.1
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+||+|+|||+ |.||..+|.+|+++|++|++|||++++.+.+.+.+ +.. .++.++++. +|+||+|||+.
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~-~~~~~~~~~---aDvVi~av~~~ 78 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-------IPL-TDGDGWIDE---ADVVVLALPDN 78 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-------CCC-CCSSGGGGT---CSEEEECSCHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-------CCc-CCHHHHhcC---CCEEEEcCCch
Confidence 4579999999 99999999999999999999999999988876632 333 356676666 99999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCCc------ccccCC-------C-c--c
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGE------EGARHG-------P-S--L 147 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v-~~pvsgg~------~~a~~G-------~-~--i 147 (474)
.++++++++.+.+.++.+|||+|+..+.. .+.+ + ..+..|+ .+|++|++ .....| . . +
T Consensus 79 -~~~~v~~~l~~~l~~~~ivv~~s~~~~~~--~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~ 153 (286)
T 3c24_A 79 -IIEKVAEDIVPRVRPGTIVLILDAAAPYA--GVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCA 153 (286)
T ss_dssp -HHHHHHHHHGGGSCTTCEEEESCSHHHHH--TCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEE
T ss_pred -HHHHHHHHHHHhCCCCCEEEECCCCchhH--HHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeee
Confidence 58999999999899999999988876322 2222 2 2367888 78999887 445666 2 2 2
Q ss_pred ccCCCHHHHHHHHHHHHHHhc---cCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHH
Q 011931 148 MPGGSFEAYKYIEDILLKVAA---QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQ 223 (474)
Q Consensus 148 ~~gg~~~~~~~v~~ll~~lg~---~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~-G~l~~~~~~ 223 (474)
..+++++.++.++++|+.+|. + ++++++.+.+.+.|.+.|+.....+..++|++..+... | ++.+++.
T Consensus 154 ~~~~~~~~~~~v~~l~~~~G~~~~~-------~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~G-l~~~~~~ 225 (286)
T 3c24_A 154 LMQGPEEHYAIGADICETMWSPVTR-------THRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYG-IDRQAAL 225 (286)
T ss_dssp EEESCTHHHHHHHHHHHHHTCSEEE-------EEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcce-------EEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 356889999999999999997 4 58888877777779999988889999999988766555 8 9999998
Q ss_pred HHHH
Q 011931 224 NVFT 227 (474)
Q Consensus 224 ~~~~ 227 (474)
+++.
T Consensus 226 ~~~~ 229 (286)
T 3c24_A 226 DFMI 229 (286)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=186.11 Aligned_cols=252 Identities=15% Similarity=0.157 Sum_probs=166.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-----C-CcEEEEeCChHHHHHHHH-hhhhcCC-------CCccccCCHHHHHhhc
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-----G-FPISVYNRTTSKVDETVE-RAKKEGD-------LPLFGFRDPESFVNSI 71 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-----G-~~V~v~dr~~~~~~~l~~-~~~~~~~-------~~~~~~~s~~e~~~~l 71 (474)
++|||+|||+|.||..+|.+|+++ | ++|++||| +++.+.+.+ .+..... .++..+++ .+.+..
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~- 83 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDN-PAEVGT- 83 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESC-HHHHCC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecC-ccccCC-
Confidence 346899999999999999999999 9 99999999 888888876 4321000 00111133 344555
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCC-C-cccccCCC
Q 011931 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSG-G-EEGARHGP 145 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~pvsg-g-~~~a~~G~ 145 (474)
+|+||+|||+. +++++++++.+.+.++++||+++++. ...+.+.+.+.. .|+.++++++++ | ......|.
T Consensus 84 --~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~ 159 (317)
T 2qyt_A 84 --VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRE 159 (317)
T ss_dssp --EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred --CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCc
Confidence 99999999997 68999999999998899999998875 333444444433 344566777664 2 22233444
Q ss_pred cc-c----cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHH-------------------HHH
Q 011931 146 SL-M----PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEY-------------------GDM 201 (474)
Q Consensus 146 ~i-~----~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~-------------------~~~ 201 (474)
.. + .+++.+.+ .+.++|+..+.+ +.+.++.+.+.+.|++.|.... ...
T Consensus 160 ~~~ig~~~~~~~~~~~-~~~~ll~~~g~~-------~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~ 231 (317)
T 2qyt_A 160 LFYFGSGLPEQTDDEV-RLAELLTAAGIR-------AYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELL 231 (317)
T ss_dssp EEEEECCSSSCCHHHH-HHHHHHHHTTCC-------EECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHH
T ss_pred eEEEcCCCCCCcCHHH-HHHHHHHHCCCC-------CEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 3 33457777 899999998865 4777889999999999998754 455
Q ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhcccccccccCCCcch--HHHHhhhcCCCccHHHHHHH
Q 011931 202 QLIAEAYDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYL--VDKVLDKTGMKGTGKWTVQQ 277 (474)
Q Consensus 202 ~~i~Ea~~l~~~~G~l~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~--~~~i~~~~~~k~tg~~~~~~ 277 (474)
+++.|+..++++.| ++.+ .+.+++....... .....++..+ +..++. ++.+ .| ++++.
T Consensus 232 ~~~~E~~~v~~a~G-~~~~~~~~~~~~~~~~~~~-~~~~~sm~~d-------~~~g~~~E~~~~--------~g-~~~~~ 293 (317)
T 2qyt_A 232 SLLEEVAELFRAKY-GQVPDDVVQQLLDKQRKMP-PESTSSMHSD-------FLQGGSTEVETL--------TG-YVVRE 293 (317)
T ss_dssp HHHHHHHHHHHHHT-SCCCSSHHHHHHHHHHHC----------------------------CTT--------TH-HHHHH
T ss_pred HHHHHHHHHHHHcC-CCCChHHHHHHHHHHhccC-CCCCChHHHH-------HHcCCccCHHHH--------hh-HHHHH
Confidence 89999999999999 9864 5666654321100 0001111112 222221 2222 23 68899
Q ss_pred HHHcCCCcccHHH
Q 011931 278 AADLSVAAPTIEE 290 (474)
Q Consensus 278 a~~~gv~~p~~~~ 290 (474)
|+++|+|+|..+.
T Consensus 294 a~~~gv~~P~~~~ 306 (317)
T 2qyt_A 294 AEALRVDLPMYKR 306 (317)
T ss_dssp HHHTTCCCHHHHH
T ss_pred HHHcCCCCCHHHH
Confidence 9999999998743
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-21 Score=188.77 Aligned_cols=250 Identities=18% Similarity=0.248 Sum_probs=166.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCcc-ccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLF-GFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-~~~~-~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+...+.. +. .... ..++ .+.++. +|+||+|||+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~~---~d~vi~~v~~~- 74 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETD-GSIFNESLTAND-PDFLAT---SDLLLVTLKAW- 74 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTT-SCEEEEEEEESC-HHHHHT---CSEEEECSCGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCC-CceeeeeeeecC-ccccCC---CCEEEEEecHH-
Confidence 589999999999999999999999999999998765443221100 00 0001 1233 455565 99999999996
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEecCCCCC-cccccCCC-cccc-CCCHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLGMGVSGG-EEGARHGP-SLMP-GGSFEAYKYIE 160 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~v~~pvsgg-~~~a~~G~-~i~~-gg~~~~~~~v~ 160 (474)
.++++++++.+.+.++++||+++++. ...+.+.+.+.+ .|..+.++...+. +..+..|. .+.+ +++++.++.++
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~ 153 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHH
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHH
Confidence 68999999999999999999998865 232333333322 1222211112221 33445666 4444 45677788999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCCCH--H
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVGKLTN--E 220 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~------------------~~~~~~i~Ea~~l~~~~G~l~~--~ 220 (474)
++|+.++.+ +.+.++.+.+.+.|++.|... ....+++.|+..++++.| ++. +
T Consensus 154 ~ll~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G-~~~~~~ 225 (291)
T 1ks9_A 154 DILQTVLPD-------VAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREG-HHTSAE 225 (291)
T ss_dssp HHHHTTSSC-------EEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHT-CCCCHH
T ss_pred HHHHhcCCC-------CeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcC-CCCCHH
Confidence 999998865 577888999999999999887 678899999999999999 886 4
Q ss_pred HHHHHHHhh-cc-CcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 221 ELQNVFTEW-NK-GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 221 ~~~~~~~~~-~~-~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
.+.+.+..+ .. ....|.+. .++...+. ..++.+ .| ++++.|+++|+|+|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~ssm~---~d~~~g~~-----~e~~~~--------~g-~~~~~a~~~gv~~P~~~ 279 (291)
T 1ks9_A 226 DLRDYVMQVIDATAENISSML---QDIRALRH-----TEIDYI--------NG-FLLRRARAHGIAVPENT 279 (291)
T ss_dssp HHHHHHHHHHHHTTTCCCHHH---HHHHTTCC-----CSGGGT--------HH-HHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCChHH---HHHHcCCc-----cHHHHH--------HH-HHHHHHHHhCCCCCHHH
Confidence 543332221 11 11222222 23322111 122222 34 68899999999999874
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-21 Score=190.64 Aligned_cols=199 Identities=14% Similarity=0.085 Sum_probs=139.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc---C-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE---G-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~-~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+.|||+|||+|.||+.||.+|+++|++|++|||++++++.+.+.+... + ..++..++++++ +.. +|+||+||
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~v 88 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAI 88 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEEC
Confidence 457999999999999999999999999999999999999888764210 0 001355677777 666 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecCCCCCccccc---CCC-c-cccCCCHHH
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMGVSGGEEGAR---HGP-S-LMPGGSFEA 155 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~---~G~-~-i~~gg~~~~ 155 (474)
|+ .++++++.++.+ ++++||+++++.. .+.+.+.+.+.+.. . .+.++..+|..+. .|. . +..|+++
T Consensus 89 k~-~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~-~-~~~~~~~~P~~~~~~~~g~~~~~~~g~~~-- 160 (335)
T 1z82_A 89 PV-QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEIL-G-CPYAVLSGPSHAEEVAKKLPTAVTLAGEN-- 160 (335)
T ss_dssp CG-GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHT-C-CCEEEEESSCCHHHHHTTCCEEEEEEETT--
T ss_pred CH-HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHc-C-CceEEEECCccHHHHhCCCceEEEEEehh--
Confidence 97 689999877665 7899999997643 33344555544321 1 2233333333332 454 3 3444433
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCc-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSKG-----------------GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~~-----------------g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~ 218 (474)
.+.++++|+..+.+ +++.++. |.+..+|+.+|.+......++.|+..++++.| ++
T Consensus 161 ~~~~~~ll~~~g~~-------~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G-~~ 232 (335)
T 1z82_A 161 SKELQKRISTEYFR-------VYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG-AD 232 (335)
T ss_dssp HHHHHHHHCCSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHhCCCCEE-------EEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC-CC
Confidence 78899999887765 3444432 22233456678888888999999999999999 99
Q ss_pred HHHHHH
Q 011931 219 NEELQN 224 (474)
Q Consensus 219 ~~~~~~ 224 (474)
++++.+
T Consensus 233 ~~~~~~ 238 (335)
T 1z82_A 233 QKTFMG 238 (335)
T ss_dssp HHHHTS
T ss_pred hhhhcc
Confidence 887654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=190.55 Aligned_cols=201 Identities=13% Similarity=0.073 Sum_probs=143.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEEec
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~----~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
||+|||+|.||..||.+|+++||+|++|||++++++.+.+.+.... + .++..+++++++++. +|+||+||
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVilav 93 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFVI 93 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEECC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEECC
Confidence 8999999999999999999999999999999999988876541100 0 024556788888877 99999999
Q ss_pred CCChhHHHHHHH----HHhcccC-CCEEEecCCCCch-hHHHHHHHHHHc-CC---eEEecCCCCCcccccCCC---ccc
Q 011931 82 KAGAPVDETIKT----LSAYMEK-GDCIIDGGNEWYE-NTERREKAMAEL-GL---LYLGMGVSGGEEGARHGP---SLM 148 (474)
Q Consensus 82 p~~~~v~~vl~~----l~~~l~~-g~iiId~st~~~~-~~~~~~~~l~~~-g~---~~v~~pvsgg~~~a~~G~---~i~ 148 (474)
|+ ..+++++.+ +.+.+.+ +++||+++++... ..+.+.+.+.+. +. .++.+|..... ...|. .++
T Consensus 94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~--~~~g~~~~~~~ 170 (366)
T 1evy_A 94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIE--VATGVFTCVSI 170 (366)
T ss_dssp CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHH--HHTTCCEEEEE
T ss_pred Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHH--HHhCCceEEEE
Confidence 97 588999988 9888888 9999999965433 233334444332 32 23333432211 11333 234
Q ss_pred cCCCHHHHHHHHHHHHHH--hccCCCCCCceEEeCCch---hHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 011931 149 PGGSFEAYKYIEDILLKV--AAQVPDSGPCVTYVSKGG---SGNF--------------VKMIHNGIEYGDMQLIAEAYD 209 (474)
Q Consensus 149 ~gg~~~~~~~v~~ll~~l--g~~~~~~~~~~~~~g~~g---~g~~--------------~K~v~N~~~~~~~~~i~Ea~~ 209 (474)
.+++++..+.++++|+.. +.+ +++.++.- -+.+ +|+.+|.+......+++|+..
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g~~-------~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~ 243 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRSFV-------CWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRD 243 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHhcCCCCeEE-------EEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 566888899999999988 654 35555432 2222 345578888889999999999
Q ss_pred HHHHhCCCCHHHHH
Q 011931 210 VLKSVGKLTNEELQ 223 (474)
Q Consensus 210 l~~~~G~l~~~~~~ 223 (474)
++++.| ++++++.
T Consensus 244 la~a~G-i~~~~~~ 256 (366)
T 1evy_A 244 LTAALG-GDGSAVF 256 (366)
T ss_dssp HHHHTT-CCCTTTT
T ss_pred HHHHhC-CCCcccc
Confidence 999999 9987654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=173.85 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=142.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCChH--HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS--KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~--~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+|||+|||+|.||.+||.+|+++| ++|++|||+++ +.+++.+.+ +..+.++.++++. +|+||+|
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-------~~~~~~~~e~~~~---aDvVila 91 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-------VKLTPHNKETVQH---SDVLFLA 91 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-------CEEESCHHHHHHH---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-------CEEeCChHHHhcc---CCEEEEE
Confidence 578999999999999999999999 89999999986 777776443 5567788888888 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEecCCCCCcccccCCCccccCCC---HHH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLYLGMGVSGGEEGARHGPSLMPGGS---FEA 155 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~v~~pvsgg~~~a~~G~~i~~gg~---~~~ 155 (474)
||+ ..+++++.++.+.+.++++||+++++.+. ..+.+.+.+. +.+++.+.. ..+.....|..++.+|+ ++.
T Consensus 92 v~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p-~~p~~~~~g~~v~~~g~~~~~~~ 167 (322)
T 2izz_A 92 VKP-HIIPFILDEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMT-NTPVVVREGATVYATGTHAQVED 167 (322)
T ss_dssp SCG-GGHHHHHHHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEEC-CGGGGGTCEEEEEEECTTCCHHH
T ss_pred eCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeC-CcHHHHcCCeEEEEeCCCCCHHH
Confidence 996 58999999999989899999999887653 3455555542 345554322 22223334445665665 788
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 156 ~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~--v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
++.++++|+.+|.. +++.+.....+..+ ..+.+.+.++..++|+ +.+.| ++++++.+++.
T Consensus 168 ~~~v~~ll~~~G~~--------~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~G-l~~~~a~~l~~ 229 (322)
T 2izz_A 168 GRLMEQLLSSVGFC--------TEVEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMG-LPRRLAVRLGA 229 (322)
T ss_dssp HHHHHHHHHTTEEE--------EECCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCE--------EEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999964 34444322223222 2245556666666666 57788 99999888874
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=173.33 Aligned_cols=227 Identities=14% Similarity=0.118 Sum_probs=159.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|||+|||+|.||..+|.+|+++| ++|++|||++++.+++.+.. ++..+.++.+++ . +|+||+||| +..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~------g~~~~~~~~~~~-~---~D~vi~~v~-~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPELH-S---DDVLILAVK-PQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCCC-T---TSEEEECSC-HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc------CCEEeCCHHHHh-c---CCEEEEEeC-chh
Confidence 58999999999999999999999 99999999999998887652 245566777766 6 999999999 568
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCC--CHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDIL 163 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~ll 163 (474)
+++++.++.+ + +++||+++++.+. ..+.+.+. .+.+++.+ +.+.+.....|. .+++++ +++.++.++++|
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~~-~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~ 142 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSV--GTLSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIM 142 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHcC-CCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 8888877655 4 8999999665543 34444443 35678887 666666666676 577777 889999999999
Q ss_pred HHHhccCCCCCCceEEeC-C---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc
Q 011931 164 LKVAAQVPDSGPCVTYVS-K---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGE 233 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g-~---------~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~ 233 (474)
+.+|.+ ++++ + .|++. .+.+..+..+.|+ +++.| ++++++.+++... .
T Consensus 143 ~~~g~~--------~~~~~~~~~~~~~al~g~~~-------~~~~~~~~~l~e~---~~~~G-~~~~~~~~~~~~~---~ 200 (263)
T 1yqg_A 143 KSVGLT--------VWLDDEEKMHGITGISGSGP-------AYVFYLLDALQNA---AIRQG-FDMAEARALSLAT---F 200 (263)
T ss_dssp HTTEEE--------EECSSTTHHHHHHHHTTSHH-------HHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHH---H
T ss_pred HhCCCE--------EEeCChhhccHHHHHHccHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH---H
Confidence 999864 3676 4 23332 3345556666676 77888 9999988887432 2
Q ss_pred chhh-hHhhhc--c-cccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 234 LLSF-LIEITA--D-IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 234 ~~s~-~~~~~~--~-~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.++. ++.... + .+.. ..+++++.+...++++ ++.|++.|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l-------------~~~~~~~~~~ 245 (263)
T 1yqg_A 201 KGAVALAEQTGEDFEKLQK-NVTSKGGTTHEAVEAF-------------RRHRVAEAIS 245 (263)
T ss_dssp HHHHHHHHHHCCCHHHHHH-HTCCTTSHHHHHHHHH-------------HHTTHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHH-hcCCCChhHHHHHHHH-------------HHCCHHHHHH
Confidence 2222 332221 2 2232 2256666666655543 5577777776
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=176.66 Aligned_cols=202 Identities=13% Similarity=0.063 Sum_probs=144.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHhhhhc--C-C-CCccccC--CHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR--TTSKVDETVERAKKE--G-D-LPLFGFR--DPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~~~~~--~-~-~~~~~~~--s~~e~~~~l~~~dvIil 79 (474)
|||+|||+|.||..+|..|+++|++|++||| ++++.+.+.+.+... + . .++..++ +++++++. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 5899999999999999999999999999999 999888877653200 0 0 0113444 66677766 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCC---c-hhHHHHHHHHHHc-CCeEEecCCCCCccccc---CCC--cccc
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW---Y-ENTERREKAMAEL-GLLYLGMGVSGGEEGAR---HGP--SLMP 149 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~---~-~~~~~~~~~l~~~-g~~~v~~pvsgg~~~a~---~G~--~i~~ 149 (474)
|||+. .+++++.++.+ +.++++||+++++. + ...+.+.+.+.+. |..+ ..++..+|..+. .|. .+++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRE-RTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGG-GEEEEESSCCHHHHHTTCCEEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCC-cEEEEECCCcHHHHHccCCcEEEE
Confidence 99986 88999999999 99999999998765 2 3444555555442 3211 112222222222 233 3444
Q ss_pred C-CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCch-----------------hHHHHHHH-----HHHHHHHHHHHHHH
Q 011931 150 G-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGG-----------------SGNFVKMI-----HNGIEYGDMQLIAE 206 (474)
Q Consensus 150 g-g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g-----------------~g~~~K~v-----~N~~~~~~~~~i~E 206 (474)
+ .+++..+.++++|+..+.+ +.+.++.. ....+|+. +|.......++++|
T Consensus 155 ~~~~~~~~~~~~~ll~~~g~~-------~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E 227 (335)
T 1txg_A 155 SSPSESSANKMKEIFETEYFG-------VEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227 (335)
T ss_dssp ECSCHHHHHHHHHHHCBTTEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHhCCCcEE-------EEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 4 4788899999999988765 35666643 33345777 88888888999999
Q ss_pred HHHHHHHhCCCCHHHHH
Q 011931 207 AYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 207 a~~l~~~~G~l~~~~~~ 223 (474)
+..++++.| ++++++.
T Consensus 228 ~~~la~~~G-~~~~~~~ 243 (335)
T 1txg_A 228 MAELIEILG-GDRETAF 243 (335)
T ss_dssp HHHHHHHHT-SCGGGGG
T ss_pred HHHHHHHHC-CCcchhh
Confidence 999999999 9987654
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=161.90 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=134.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+|||+|||+|.||.+++.+|+++|+ +|++|||++++.+++.+.. ++..+.+++++++. +|+||+|||
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------g~~~~~~~~e~~~~---aDvVilav~ 72 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------GLTTTTDNNEVAKN---ADILILSIK 72 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------CCEECSCHHHHHHH---CSEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------CCEEeCChHHHHHh---CCEEEEEeC
Confidence 4789999999999999999999999 9999999999999887643 25677899999988 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccccCCC-cccc--CCCHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMP--GGSFEAYKY 158 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a~~G~-~i~~--gg~~~~~~~ 158 (474)
+. .++++++++.+.++++++||+.+++... ..+.+.+. .+..++.. | ..|.....|. .+++ +++++.++.
T Consensus 73 ~~-~~~~v~~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~-~~~~~v~~~p--~~p~~~~~g~~~~~~~~~~~~~~~~~ 146 (247)
T 3gt0_A 73 PD-LYASIINEIKEIIKNDAIIVTIAAGKSI--ESTENAFN-KKVKVVRVMP--NTPALVGEGMSALCPNEMVTEKDLED 146 (247)
T ss_dssp TT-THHHHC---CCSSCTTCEEEECSCCSCH--HHHHHHHC-SCCEEEEEEC--CGGGGGTCEEEEEEECTTCCHHHHHH
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEecCCCCH--HHHHHHhC-CCCcEEEEeC--ChHHHHcCceEEEEeCCCCCHHHHHH
Confidence 64 8999999999999999999977666543 23444432 34445432 2 1122222344 3444 478999999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLTNEELQNVFT 227 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l-~~~~G~l~~~~~~~~~~ 227 (474)
++++|+.+|.. +++++.-.-.++-+... .-+.+..+.|++.. +.+.| +++++..+++.
T Consensus 147 ~~~l~~~~G~~--------~~~~e~~~d~~~a~~g~--gpa~~~~~~eal~~a~~~~G-l~~~~a~~~~~ 205 (247)
T 3gt0_A 147 VLNIFNSFGQT--------EIVSEKLMDVVTSVSGS--SPAYVYMIIEAMADAAVLDG-MPRNQAYKFAA 205 (247)
T ss_dssp HHHHHGGGEEE--------EECCGGGHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHhCCCE--------EEeCHHHccHHHHHhcc--HHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 99999999963 55543211111111111 11233444555544 77888 99999999873
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=168.49 Aligned_cols=172 Identities=16% Similarity=0.213 Sum_probs=136.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHH-HHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPES-FVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e-~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||.++|..|.++|+ +|++|||++++++.+.+.+.. ...++++++ +++. +|+||+|||
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~~~~~~~~~---aDvVilavp 103 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSP 103 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCTTGGGGGC---CSEEEECSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc-----chhcCCHHHHhhcc---CCEEEEeCC
Confidence 34789999999999999999999999 999999999998887765421 134667888 7777 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC----ccccc----CCC-cccc---
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG----EEGAR----HGP-SLMP--- 149 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg----~~~a~----~G~-~i~~--- 149 (474)
+. .+.+++.++.+.++++.+|+|++++.......+.+.+.. +|++ .|+.|. +..+. .|. .+++
T Consensus 104 ~~-~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~ 179 (314)
T 3ggo_A 104 VR-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTK 179 (314)
T ss_dssp GG-GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCT
T ss_pred HH-HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCC
Confidence 86 688899999999999999999999887666666665533 6887 588875 33333 465 4444
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH
Q 011931 150 GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI 196 (474)
Q Consensus 150 gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~ 196 (474)
+++++.++.++++|+.+|.+ ++++++......+.++...-
T Consensus 180 ~~~~~~~~~v~~l~~~~G~~-------v~~~~~~~hD~~~a~~s~lp 219 (314)
T 3ggo_A 180 KTDKKRLKLVKRVWEDVGGV-------VEYMSPELHDYVFGVVSHLP 219 (314)
T ss_dssp TSCHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHHHHH
Confidence 46899999999999999986 47888877777777765443
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-19 Score=179.24 Aligned_cols=204 Identities=10% Similarity=0.083 Sum_probs=145.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhcC---C----CCccccCCHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKEG---D----LPLFGFRDPES 66 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~~---~----~~~~~~~s~~e 66 (474)
+||||+|||+|.||++||..|+++| ++|++|||+++ +.+.+.+.+.... + .++..++++++
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 3578999999999999999999999 99999999998 8887766431100 0 02456678888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHHh----cccCCCEEEecCCCCch---hHHHHHHHHHHc-CCeEEecCCCCCc
Q 011931 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSA----YMEKGDCIIDGGNEWYE---NTERREKAMAEL-GLLYLGMGVSGGE 138 (474)
Q Consensus 67 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~----~l~~g~iiId~st~~~~---~~~~~~~~l~~~-g~~~v~~pvsgg~ 138 (474)
+++. +|+||+|||+ ..+++++.++.+ .+.++++||+++++... ..+.+.+.+.+. + .+.++..+|
T Consensus 100 a~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp 172 (375)
T 1yj8_A 100 VIND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN---IPCSALSGA 172 (375)
T ss_dssp HHTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS---SCEEEEECS
T ss_pred HHcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC---CCEEEEeCC
Confidence 8877 9999999997 589999999998 89899999999976433 122333333321 2 122333333
Q ss_pred ccc---cCCC---ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHH-----------------HHHHHHH
Q 011931 139 EGA---RHGP---SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF-----------------VKMIHNG 195 (474)
Q Consensus 139 ~~a---~~G~---~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~-----------------~K~v~N~ 195 (474)
..+ ..|. .++.+++++..+.++++|+..+.+ +++.++.-...+ +|+.+|.
T Consensus 173 ~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~-------~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~ 245 (375)
T 1yj8_A 173 NIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFK-------INCVNETIEVEICGALKNIITLACGFCDGLNLPTNS 245 (375)
T ss_dssp CCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEE-------EEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred chHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeE-------EEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhH
Confidence 322 1333 344566888899999999988765 355555322222 3445788
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCHHHHH
Q 011931 196 IEYGDMQLIAEAYDVLKSVG-KLTNEELQ 223 (474)
Q Consensus 196 ~~~~~~~~i~Ea~~l~~~~G-~l~~~~~~ 223 (474)
......++++|+..++++.| |++++++.
T Consensus 246 ~~a~~~~~~~E~~~la~a~G~G~~~~~~~ 274 (375)
T 1yj8_A 246 KSAIIRNGINEMILFGKVFFQKFNENILL 274 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcchhh
Confidence 88889999999999999994 49887664
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=161.79 Aligned_cols=178 Identities=16% Similarity=0.227 Sum_probs=138.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-hcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-SIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~-~l~~~dvIil~vp~ 83 (474)
|++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...+++++++++ . +|+||+|||+
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~---aDvVilavp~ 72 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 72 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGGTC---CSEEEECSCH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc-----ccccCCHHHHhcCC---CCEEEEcCCH
Confidence 4689999999999999999999999 999999999988876654320 123567777776 6 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC----ccccc----CCC-cccc---C
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 150 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg----~~~a~----~G~-~i~~---g 150 (474)
. .+.+++.++.+.++++.+|++++++.....+.+.+.+.. + +++ .|+.++ |..+. .|. +++. +
T Consensus 73 ~-~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~--~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~ 148 (281)
T 2g5c_A 73 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-R--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 148 (281)
T ss_dssp H-HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-G--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS
T ss_pred H-HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-c--ceeeccccCCccCChhhhhhHHhCCCCEEEecCCC
Confidence 6 778889999888999999999999887666666666543 2 665 466653 33332 566 5555 6
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011931 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQL 203 (474)
Q Consensus 151 g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~ 203 (474)
++++.++.++++|+.+|.+ ++++++...+.++|++.|...+....+
T Consensus 149 ~~~~~~~~v~~l~~~~g~~-------~~~~~~~~~d~~~~~~~~~~~~~a~~~ 194 (281)
T 2g5c_A 149 TDKKRLKLVKRVWEDVGGV-------VEYMSPELHDYVFGVVSHLPHAVAFAL 194 (281)
T ss_dssp SCHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999976 477887777889999988876544433
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=171.61 Aligned_cols=202 Identities=10% Similarity=0.060 Sum_probs=143.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhc----C---CCCccccCCHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKE----G---DLPLFGFRDPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----~---~~~~~~~~s~~e~ 67 (474)
+|||+|||+|.||..+|..|+++| ++|++|||+++ +.+.+.+.+... + ..++..+++++++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 468999999999999999999999 99999999988 787776532100 0 0024456788888
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCc---hhHHHHHHHHHHc-CCeEEecCCCCCccccc-
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY---ENTERREKAMAEL-GLLYLGMGVSGGEEGAR- 142 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~---~~~~~~~~~l~~~-g~~~v~~pvsgg~~~a~- 142 (474)
++. +|+||+|||+ ..++++++++.+.+.++++||+++++.. ...+.+.+.+.+. +. +.++..+|..+.
T Consensus 88 ~~~---aD~Vilav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~---~~~v~~gp~~a~~ 160 (354)
T 1x0v_A 88 AED---ADILIFVVPH-QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGI---PMSVLMGANIASE 160 (354)
T ss_dssp HTT---CSEEEECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTC---CEEEEECSCCHHH
T ss_pred HcC---CCEEEEeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCC---CEEEEECCCcHHH
Confidence 777 9999999998 4899999999999999999999998653 2222232322221 31 223333333222
Q ss_pred --CCC---ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH-----------------HHHHHHHH
Q 011931 143 --HGP---SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMI-----------------HNGIEYGD 200 (474)
Q Consensus 143 --~G~---~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v-----------------~N~~~~~~ 200 (474)
.|. ..+.+++++..+.++++|+..+.+ +++.++.-...+.|.+ +|......
T Consensus 161 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~-------~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~ 233 (354)
T 1x0v_A 161 VADEKFCETTIGCKDPAQGQLLKELMQTPNFR-------ITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVI 233 (354)
T ss_dssp HHTTCCEEEEEECSSHHHHHHHHHHHCBTTEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhCCCCEE-------EEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHH
Confidence 343 234456788899999999988865 3555554333344433 77777888
Q ss_pred HHHHHHHHHHHHHhCCC---CHHHHH
Q 011931 201 MQLIAEAYDVLKSVGKL---TNEELQ 223 (474)
Q Consensus 201 ~~~i~Ea~~l~~~~G~l---~~~~~~ 223 (474)
..++.|+..++++.| + +++++.
T Consensus 234 ~~~~~E~~~la~a~G-~~~~~~~~~~ 258 (354)
T 1x0v_A 234 RLGLMEMIAFAKLFC-SGPVSSATFL 258 (354)
T ss_dssp HHHHHHHHHHHHHHS-SSCCCGGGGG
T ss_pred HHHHHHHHHHHHHhc-CCCCCccccc
Confidence 999999999999999 8 876653
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=160.59 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=140.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cC-C----------CCccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EG-D----------LPLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~~-~----------~~~~~~~s~~e~~ 68 (474)
++||+|||+|.||..+|..|+++|++|++||+++++++++.+.... .+ . .++..++++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 5689999999999999999999999999999999988877654100 00 0 0245677888887
Q ss_pred hhcCCCcEEEEecCCChh-HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-c
Q 011931 69 NSIQKPRVIIMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-S 146 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~ 146 (474)
+. +|+||++||+..+ ...++.++.+.++++.++++.+++.+. .++++.+. ++.++++..... .+..++ .
T Consensus 84 ~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~--~~la~~~~-~~~~~ig~h~~~---p~~~~~lv 154 (283)
T 4e12_A 84 KD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP--SDLVGYTG-RGDKFLALHFAN---HVWVNNTA 154 (283)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHHHHHS-CGGGEEEEEECS---STTTSCEE
T ss_pred cc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcC-CCcceEEEccCC---CcccCceE
Confidence 77 9999999998743 456668888889999999987777643 34444442 222344332111 112344 3
Q ss_pred -cccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 147 -LMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 147 -i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
++.+ .+++.++.++++++.+|.. +++++..+.|.. + |.+. ...++|++.++++.+ ++++++.
T Consensus 155 evv~~~~t~~~~~~~~~~l~~~~g~~-------~v~v~~~~~g~i---~-nr~~---~~~~~ea~~l~~~g~-~~~~~id 219 (283)
T 4e12_A 155 EVMGTTKTDPEVYQQVVEFASAIGMV-------PIELKKEKAGYV---L-NSLL---VPLLDAAAELLVDGI-ADPETID 219 (283)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTTCE-------EEECSSCCTTTT---H-HHHH---HHHHHHHHHHHHTTS-CCHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCE-------EEEEecCCCCEE---e-hHHH---HHHHHHHHHHHHhCC-CCHHHHH
Confidence 3333 3789999999999999976 477766666653 3 4433 346799999999988 9999999
Q ss_pred HHHH
Q 011931 224 NVFT 227 (474)
Q Consensus 224 ~~~~ 227 (474)
+++.
T Consensus 220 ~~~~ 223 (283)
T 4e12_A 220 KTWR 223 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=157.68 Aligned_cols=194 Identities=19% Similarity=0.180 Sum_probs=142.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+|||||||+|.||.+|+..|+++|+ +|++|||++++.+++.+.. ++..+.+..++++. +|+||+|||+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------gi~~~~~~~~~~~~---aDvVilav~p 73 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------GVHTTQDNRQGALN---ADVVVLAVKP 73 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------CCEEESCHHHHHSS---CSEEEECSCG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------CCEEeCChHHHHhc---CCeEEEEeCH
Confidence 5789999999999999999999999 9999999999999887752 25677888888887 9999999987
Q ss_pred ChhHHHHHHHHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccC--CCHHHHHH
Q 011931 84 GAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYKY 158 (474)
Q Consensus 84 ~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~g--g~~~~~~~ 158 (474)
+.++++++++.+. ++++++||+.+++.+. ..+.+.+. .+..++. +|. .|.....|.+ ++++ .+++.++.
T Consensus 74 -~~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~-~~~~vvr~mPn--~p~~v~~g~~~l~~~~~~~~~~~~~ 147 (280)
T 3tri_A 74 -HQIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLG-KASRIVRAMPN--TPSSVRAGATGLFANETVDKDQKNL 147 (280)
T ss_dssp -GGHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHT-CCSSEEEEECC--GGGGGTCEEEEEECCTTSCHHHHHH
T ss_pred -HHHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcC-CCCeEEEEecC--ChHHhcCccEEEEeCCCCCHHHHHH
Confidence 5899999999998 8888899988877653 34555443 3345554 342 2222333443 3444 36899999
Q ss_pred HHHHHHHHhccCCCCCCceEEeCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 159 IEDILLKVAAQVPDSGPCVTYVSKGG---SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 159 v~~ll~~lg~~~~~~~~~~~~~g~~g---~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
++++|+.+|.. .++.+.. ....+.-..+++.+.++..+.|+ +.+.| +++++..+++.
T Consensus 148 v~~l~~~iG~~--------~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~G-l~~~~a~~l~~ 207 (280)
T 3tri_A 148 AESIMRAVGLV--------IWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLG-LTKETAELLTE 207 (280)
T ss_dssp HHHHHGGGEEE--------EECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHCCCe--------EEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999963 4554311 11111111245677778888887 56888 99999998874
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=166.23 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=131.8
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh-cCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS-IQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~-l~~~dvIil 79 (474)
|..+..+++|+|||+|.||.+||+.|.++|++|++|||++++.+.+.+.+ +..+.+++++++. ...+|+||+
T Consensus 2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G-------~~~~~~~~e~~~~a~~~aDlVil 74 (341)
T 3ktd_A 2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEG-------FDVSADLEATLQRAAAEDALIVL 74 (341)
T ss_dssp ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTT-------CCEESCHHHHHHHHHHTTCEEEE
T ss_pred CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeeeCCHHHHHHhcccCCCEEEE
Confidence 44455678999999999999999999999999999999999888776543 4456788877653 122699999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCc-cccc-------CCC-cccc
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGE-EGAR-------HGP-SLMP 149 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~-~~a~-------~G~-~i~~ 149 (474)
|||.. .+..++.++.+. .++.+|+|++++.....+.+.+.+ .+.+|++ .|++|++ .+.. .|. .+++
T Consensus 75 avP~~-~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~--~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 75 AVPMT-AIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARN--MQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp CSCHH-HHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTT--CGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEEC
T ss_pred eCCHH-HHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhC--CCCcEecCCccccccccchhhhhhHHhcCCeEEEE
Confidence 99974 788999998885 789999999998865555554433 2468998 6999875 3332 343 4454
Q ss_pred CC---CHH--------HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH
Q 011931 150 GG---SFE--------AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG 195 (474)
Q Consensus 150 gg---~~~--------~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~ 195 (474)
.+ +++ .++.++++|+.+|++ ++++++...-..+.++...
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~-------v~~~~~~~HD~~~A~vshl 200 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGAE-------VVPSRVGPHDAAAARVSHL 200 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCCE-------EEEeCHHHHHHHHHHHhHH
Confidence 43 566 899999999999987 4788776666666555443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=166.86 Aligned_cols=193 Identities=11% Similarity=0.116 Sum_probs=137.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHH--------HHHHhhhhcC------CCCccccCCHHHHHhhc
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD--------ETVERAKKEG------DLPLFGFRDPESFVNSI 71 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~--------~l~~~~~~~~------~~~~~~~~s~~e~~~~l 71 (474)
.++||+|||+|.||.+||..|+++|++|++||+++++.. ++.+.+.... ..+++.+++++ .++.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~- 130 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSN- 130 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTT-
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHcc-
Confidence 457899999999999999999999999999999998432 2222221000 00345667775 3444
Q ss_pred CCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCcccccCCC-
Q 011931 72 QKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARHGP- 145 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~~~a~~G~- 145 (474)
||+||+|||....++ .++.++.+.+++++||++.+++.+.+ ++++.+.. .|.||++ |+. ..+
T Consensus 131 --aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~--~ia~~~~~p~r~iG~Hffn-Pv~-------~m~L 198 (460)
T 3k6j_A 131 --CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN--EISSVLRDPSNLVGIHFFN-PAN-------VIRL 198 (460)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHHTTSSSGGGEEEEECCS-STT-------TCCE
T ss_pred --CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH--HHHHhccCCcceEEEEecc-hhh-------hCCE
Confidence 999999999876665 56688999999999998776665432 34433321 1455555 332 223
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 146 -SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 146 -~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
.++.| +++++++.+.++++.+|+. ++++++ +.|. +.|.+.. ..++|++.++++.| ++++++
T Consensus 199 vEIv~g~~Ts~e~~~~~~~l~~~lGk~-------~v~v~d-~pGf----i~Nril~---~~~~EA~~l~~~~G-a~~e~I 262 (460)
T 3k6j_A 199 VEIIYGSHTSSQAIATAFQACESIKKL-------PVLVGN-CKSF----VFNRLLH---VYFDQSQKLMYEYG-YLPHQI 262 (460)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHTTCE-------EEEESS-CCHH----HHHHHHH---HHHHHHHHHHHTSC-CCHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCE-------EEEEec-ccHH----HHHHHHH---HHHHHHHHHHHHcC-CCHHHH
Confidence 35666 3899999999999999976 477876 5564 3455543 45799999998889 999999
Q ss_pred HHHHHh
Q 011931 223 QNVFTE 228 (474)
Q Consensus 223 ~~~~~~ 228 (474)
.+++..
T Consensus 263 D~a~~~ 268 (460)
T 3k6j_A 263 DKIITN 268 (460)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-17 Score=155.99 Aligned_cols=186 Identities=16% Similarity=0.180 Sum_probs=133.5
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+++|||+|||+|.||+.|+.+|+++| ++|++|||++++ . ++..+.+++++++. +|+||+|
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~-------g~~~~~~~~~~~~~---~D~vi~~ 65 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T-------TLNYMSSNEELARH---CDIIVCA 65 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S-------SSEECSCHHHHHHH---CSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C-------ceEEeCCHHHHHhc---CCEEEEE
Confidence 44679999999999999999999999 799999999876 1 25567788888888 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEe-cCCCCCcccccCCCccccCC---CHH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLYLG-MGVSGGEEGARHGPSLMPGG---SFE 154 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~v~-~pvsgg~~~a~~G~~i~~gg---~~~ 154 (474)
||+. .+++++.++.+.+ ++++||..+++.... .+.+.+... .++++. .|+.+ ..|.+++.++ +++
T Consensus 66 v~~~-~~~~v~~~l~~~l-~~~~vv~~~~gi~~~--~l~~~~~~~~~~v~~~p~~p~~~-----~~g~~~~~~~~~~~~~ 136 (262)
T 2rcy_A 66 VKPD-IAGSVLNNIKPYL-SSKLLISICGGLNIG--KLEEMVGSENKIVWVMPNTPCLV-----GEGSFIYCSNKNVNST 136 (262)
T ss_dssp SCTT-THHHHHHHSGGGC-TTCEEEECCSSCCHH--HHHHHHCTTSEEEEEECCGGGGG-----TCEEEEEEECTTCCHH
T ss_pred eCHH-HHHHHHHHHHHhc-CCCEEEEECCCCCHH--HHHHHhCCCCcEEEECCChHHHH-----cCCeEEEEeCCCCCHH
Confidence 9964 8999999998888 556555554444332 333434321 133332 23332 2455444433 788
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~--v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~ 227 (474)
.++.++++|+.+|. ++++++......+++ +.|.+.+..+..+.|+ +.+.| ++++++.+++.
T Consensus 137 ~~~~~~~ll~~~G~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~G-l~~~~~~~~~~ 199 (262)
T 2rcy_A 137 DKKYVNDIFNSCGI--------IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNG-LSRELSKNLVL 199 (262)
T ss_dssp HHHHHHHHHHTSEE--------EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--------EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999985 377877555555555 3466777777777776 67888 99988888764
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-17 Score=151.32 Aligned_cols=179 Identities=13% Similarity=0.124 Sum_probs=136.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|||+||| +|.||+.++..|+++|++|+++||++++.+++.+..... ...++. ..+++++++. +|+||+++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~D~Vi~~~~~~- 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEA---CDIAVLTIPWE- 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHH---CSEEEECSCHH-
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhc---CCEEEEeCChh-
Confidence 5899999 999999999999999999999999999888776542100 000133 3577787777 99999999975
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCch------------hHHHHHHHHHHcCCeEEec--CCCCCcccc--cCCC-ccc
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYE------------NTERREKAMAELGLLYLGM--GVSGGEEGA--RHGP-SLM 148 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~------------~~~~~~~~l~~~g~~~v~~--pvsgg~~~a--~~G~-~i~ 148 (474)
.+++++.++.+.+ ++++|+|++++... ..+++.+.+. +.+++++ |+.+..... ..|. .++
T Consensus 76 ~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (212)
T 1jay_A 76 HAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP 152 (212)
T ss_dssp HHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred hHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence 6788888887777 58999999995541 2456666553 4678876 655544333 4455 666
Q ss_pred cCCC-HHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHH
Q 011931 149 PGGS-FEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDM 201 (474)
Q Consensus 149 ~gg~-~~~~~~v~~ll~~l-g~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~ 201 (474)
++|+ ++.++.++++|+.+ |.+ ++++++.+.+.++|++.|.+.+...
T Consensus 153 ~~g~~~~~~~~v~~l~~~~~G~~-------~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 153 VCGDDDESKKVVMSLISEIDGLR-------PLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp EEESCHHHHHHHHHHHHHSTTEE-------EEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHcCCCC-------ceeccchhHHHHhcchHHHHHHHHH
Confidence 6675 89999999999999 875 4788999999999999998766543
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=169.13 Aligned_cols=189 Identities=14% Similarity=0.204 Sum_probs=137.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~~----------~~~~~~s~~e~~~ 69 (474)
++||||||+|.||.+||.+|+++|++|++||+++++++++.+... ..+.. +++.++++++ ++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-LA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-hc
Confidence 568999999999999999999999999999999999887764210 00000 2345667653 55
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEe-cCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCCccccc
Q 011931 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIID-GGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGAR 142 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~~----~g~~~v~-~pvsgg~~~a~ 142 (474)
. ||+||+|||+..+++ .++.++.+.++++++|++ +|+.++ + .+++.+.. .|.||++ +|++
T Consensus 84 ~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i-~--~ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 84 A---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI-T--AIAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp G---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH-H--HHTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred C---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH-H--HHHHHccCccceEEeeecChhhhC-------
Confidence 5 999999999986664 677889899999999965 555443 2 33332211 2556665 3433
Q ss_pred CCC-ccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011931 143 HGP-SLMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (474)
Q Consensus 143 ~G~-~i~~gg---~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~ 218 (474)
+ ..+++| +++.++.+.++++.+|.. ++++++. .| ++++|.+.. .++|++.++++.+ ++
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~-------~v~v~d~-~G---fi~Nr~l~~----~~~Ea~~l~~~g~-~~ 212 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWGKQ-------PVRCHST-PG---FIVNRVARP----YYSEAWRALEEQV-AA 212 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESC-TT---TTHHHHTHH----HHHHHHHHHHTTC-SC
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhCCE-------EEEEecc-Cc---chHHHHHHH----HHHHHHHHHHhCC-CC
Confidence 3 344554 899999999999999976 4777763 24 556555433 6899999999988 99
Q ss_pred HHHHHHHHH
Q 011931 219 NEELQNVFT 227 (474)
Q Consensus 219 ~~~~~~~~~ 227 (474)
++++.+++.
T Consensus 213 ~~~id~a~~ 221 (483)
T 3mog_A 213 PEVIDAALR 221 (483)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=155.60 Aligned_cols=193 Identities=13% Similarity=0.206 Sum_probs=135.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC---------------CCccccCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD---------------LPLFGFRD 63 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~---------------~~~~~~~s 63 (474)
.|++|+|||+|.||.+||..|+++|++|++||++++++++..+... ..+. .+++.+++
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 93 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 93 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence 3568999999999999999999999999999999998776432110 0000 02445678
Q ss_pred HHHHHhhcCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCc
Q 011931 64 PESFVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGE 138 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~ 138 (474)
+++.++. +|+||+|||+..++ +.++.++.+.+.++.+|++.+++.+.. ++.+.+.. .+.||++ |+.
T Consensus 94 ~~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~~--- 164 (302)
T 1f0y_A 94 AASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PVP--- 164 (302)
T ss_dssp HHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-STT---
T ss_pred HHHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Ccc---
Confidence 8777776 99999999987554 466788888888899998776665433 33332211 1334443 221
Q ss_pred ccccCCC--ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011931 139 EGARHGP--SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 139 ~~a~~G~--~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~ 214 (474)
.++ .++.| ++++.++.+.++++.+|.. ++++++. .| ++++|.+ ..+++|++.++++.
T Consensus 165 ----~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~-------~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g 225 (302)
T 1f0y_A 165 ----VMKLVEVIKTPMTSQKTFESLVDFSKALGKH-------PVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERG 225 (302)
T ss_dssp ----TCCEEEEECCTTCCHHHHHHHHHHHHHTTCE-------EEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTT
T ss_pred ----cCceEEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcC
Confidence 233 34544 3899999999999999965 4677652 33 3444443 35689999999998
Q ss_pred CCCCHHHHHHHHH
Q 011931 215 GKLTNEELQNVFT 227 (474)
Q Consensus 215 G~l~~~~~~~~~~ 227 (474)
| ++++++..++.
T Consensus 226 ~-~~~~~id~~~~ 237 (302)
T 1f0y_A 226 D-ASKEDIDTAMK 237 (302)
T ss_dssp S-SCHHHHHHHHH
T ss_pred C-CCHHHHHHHHH
Confidence 8 99999988873
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=153.53 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=139.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|+|+|||+|.||..++..|.+.|++|++|||++++.+.+.+.+. ....+.+++++ .. +|+||+|+|+. .+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~-~~---~D~vi~av~~~-~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-----VDEAGQDLSLL-QT---AKIIFLCTPIQ-LI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-----CSEEESCGGGG-TT---CSEEEECSCHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCC-----CccccCCHHHh-CC---CCEEEEECCHH-HH
Confidence 58999999999999999999999999999999999888765431 11245677777 66 99999999975 78
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCc----cccc----CCC-cccc---CCCHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE----EGAR----HGP-SLMP---GGSFE 154 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~----~~a~----~G~-~i~~---gg~~~ 154 (474)
.+++.++.+.++++.+|+++++..+...+.+.+.+ .++++. |+.|++ ..+. .|. +++. +++++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~----~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~ 146 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW----SGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS----TTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHh----CCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHH
Confidence 89999999999999999999887765544433322 256665 776543 2222 344 3332 35889
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT--NEELQNV 225 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~--~~~~~~~ 225 (474)
..+.++++|+.+|.+ ++++++.....++|++.|.-.+... .+.++ +...| ++ .+....+
T Consensus 147 ~~~~v~~l~~~~g~~-------~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~-~~~~~~~~~~l 207 (279)
T 2f1k_A 147 QLACLRSVLEPLGVK-------IYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEK-DGDILKLAQNL 207 (279)
T ss_dssp HHHHHHHHHGGGTCE-------EEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcc-cccchhHHHhh
Confidence 999999999999976 4778888888899999987554444 33443 23344 54 3444443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=163.92 Aligned_cols=268 Identities=16% Similarity=0.128 Sum_probs=158.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc--C-CC----Cc-cccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE--G-DL----PL-FGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--~-~~----~~-~~~~s~~e~~~~l~~~dvIi 78 (474)
+|||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+... + .. ++ ..++++++++.. +|+||
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi 80 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVIL 80 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCEEE
Confidence 47999999999999999999999999999999999998887653100 0 00 11 245678887776 99999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC---CeEEe---cCCCCCccc---cc----CCC
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG---LLYLG---MGVSGGEEG---AR----HGP 145 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g---~~~v~---~pvsgg~~~---a~----~G~ 145 (474)
+|+|+. ..++++.++.+.+.++++||+..+..+. +.++.+.+.+.+ +.|++ .|+.+...+ +. .+.
T Consensus 81 ~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~~-~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 81 IVVPAI-HHASIAANIASYISEGQLIILNPGATGG-ALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp ECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred EeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCchH-HHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 999986 6788999999999999999998553333 344555566554 45655 454432111 10 011
Q ss_pred c-cc--c-CCCHHHHHHHHHHHHHHhccCCCCC-----C---ceEEeCCc--hhHHHHH---HH------HHHHHHHHHH
Q 011931 146 S-LM--P-GGSFEAYKYIEDILLKVAAQVPDSG-----P---CVTYVSKG--GSGNFVK---MI------HNGIEYGDMQ 202 (474)
Q Consensus 146 ~-i~--~-gg~~~~~~~v~~ll~~lg~~~~~~~-----~---~~~~~g~~--g~g~~~K---~v------~N~~~~~~~~ 202 (474)
. +- . +++++.++.++++|..+... .+- . ++++.+.. +.+...| +. .+.......+
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~--~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQYVAV--ENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK 236 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTEEEC--SCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhcEEc--CChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence 1 10 1 24555677777777543210 000 0 01110110 2222222 11 2334566788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchh---h--hHhhhcccccccccCCCcchHH--HHhhhcCCCccHHHHH
Q 011931 203 LIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLS---F--LIEITADIFGIKDDKGDGYLVD--KVLDKTGMKGTGKWTV 275 (474)
Q Consensus 203 ~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s---~--~~~~~~~~l~~~~~~~~~~~~~--~i~~~~~~k~tg~~~~ 275 (474)
++.|+..++++.| ++++.+.+.+.........+ + ..++..++. .+ ..++ .+.+|+. -+.| ..+
T Consensus 237 ~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~------~~-~e~~~~~~~~D~~-~~~g-~~~ 306 (359)
T 1bg6_A 237 VDAERIAIAKAFD-LNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIA------GP-INLNTRYFFEDVS-TGLV-PLS 306 (359)
T ss_dssp HHHHHHHHHHTTT-CCCCCHHHHC-------CCSHHHHHHTCGGGTTCB------CC-SSSCCHHHHHHHH-TTHH-HHH
T ss_pred HHHHHHHHHHHhC-CCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCC------CC-CCCCccceecCcC-ccHH-HHH
Confidence 9999999999999 99876666653211111110 0 111222221 11 1233 4555541 1123 688
Q ss_pred HHHHHcCCCcccHHHH
Q 011931 276 QQAADLSVAAPTIEER 291 (474)
Q Consensus 276 ~~a~~~gv~~p~~~~r 291 (474)
+.|+++|+|+|+.+.-
T Consensus 307 ~~a~~~gv~~P~~~~l 322 (359)
T 1bg6_A 307 ELGRAVNVPTPLIDAV 322 (359)
T ss_dssp HHHHHTTCCCHHHHHH
T ss_pred HHHHHcCCCchHHHHH
Confidence 9999999999999443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=156.23 Aligned_cols=155 Identities=25% Similarity=0.311 Sum_probs=120.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|+|+|||+|.||.++|..|+++ |++|++|||++++.+.+.+.+. ....+.+++++++. +|+||+|||+
T Consensus 5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~---aDvVilavp~ 76 (290)
T 3b1f_A 5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-----VDEATADFKVFAAL---ADVIILAVPI 76 (290)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-----CSEEESCTTTTGGG---CSEEEECSCH
T ss_pred ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-----cccccCCHHHhhcC---CCEEEEcCCH
Confidence 357999999999999999999988 6899999999999888765431 01345677777777 9999999998
Q ss_pred ChhHHHHHHHHHhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCC----Cccccc----CCC-ccc---c
Q 011931 84 GAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSG----GEEGAR----HGP-SLM---P 149 (474)
Q Consensus 84 ~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsg----g~~~a~----~G~-~i~---~ 149 (474)
. .+++++.++.+. ++++.+|+|++++.+..++.+.+.+..++++|++ .|++| ++..+. .|. .++ .
T Consensus 77 ~-~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~ 155 (290)
T 3b1f_A 77 K-KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSC 155 (290)
T ss_dssp H-HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECT
T ss_pred H-HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCC
Confidence 6 678899999998 8999999999998776666666655444788887 57766 443333 555 322 3
Q ss_pred CCCHHHHHHHHHHHHHHhcc
Q 011931 150 GGSFEAYKYIEDILLKVAAQ 169 (474)
Q Consensus 150 gg~~~~~~~v~~ll~~lg~~ 169 (474)
+++++.++.++++|+.+|.+
T Consensus 156 ~~~~~~~~~v~~l~~~~G~~ 175 (290)
T 3b1f_A 156 LTKPNTIPALQDLLSGLHAR 175 (290)
T ss_dssp TCCTTHHHHHHHHTGGGCCE
T ss_pred CCCHHHHHHHHHHHHHcCCE
Confidence 57889999999999999975
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=151.53 Aligned_cols=247 Identities=13% Similarity=0.141 Sum_probs=161.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC--C----CCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG--D----LPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--~----~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+|||+|||+|.||+.+|..|+++|++|++| +++++++.+.+.+.... + .++..++++++ +.. +|+||+|
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQG---ADLVLFC 93 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTT---CSEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCC---CCEEEEE
Confidence 579999999999999999999999999999 99999988877542100 0 01233455554 344 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe------cCCCCCcccccC-CC-ccccCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG------MGVSGGEEGARH-GP-SLMPGGS 152 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~------~pvsgg~~~a~~-G~-~i~~gg~ 152 (474)
||+. +++++++++.+.+.++++||.++++.... +.+.+.+. -..+. +-.+| |..+.+ +. .+.+|.
T Consensus 94 vk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~---~~vl~g~~~~~a~~~g-P~~~~~~~~g~~~ig~- 166 (318)
T 3hwr_A 94 VKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLE---QEVAAAVVYVATEMAG-PGHVRHHGRGELVIEP- 166 (318)
T ss_dssp CCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCC---SEEEEEEEEEEEEEEE-TTEEEEEEEEEEEECC-
T ss_pred cccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcC---CcEEEEEEEEeEEEcC-CeEEEEcCCceEEEcC-
Confidence 9996 89999999999999999999999987432 33444332 12222 11111 111111 12 233444
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q 011931 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI---------------------EYGDMQLIAEAYDVL 211 (474)
Q Consensus 153 ~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~---------------------~~~~~~~i~Ea~~l~ 211 (474)
.+..+.+.++|...+.+ ++...+.-...+.|++.|.. ...+..++.|+..++
T Consensus 167 ~~~~~~l~~~l~~~~~~-------~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va 239 (318)
T 3hwr_A 167 TSHGANLAAIFAAAGVP-------VETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVA 239 (318)
T ss_dssp CTTTHHHHHHHHHTTCC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCC-------cEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHH
Confidence 34557788899887765 35555677778889887742 234567889999999
Q ss_pred HHhCCCCH--HHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHH
Q 011931 212 KSVGKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 289 (474)
Q Consensus 212 ~~~G~l~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~ 289 (474)
++.| ++. +....++....... ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+
T Consensus 240 ~a~G-~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~~ 302 (318)
T 3hwr_A 240 RAEG-VKLPDDVALAIRRIAETMP--RQSSSTAQDLARGKR-----SEIDHLNG---------LIVRRGDALGIPVPANR 302 (318)
T ss_dssp HHTT-CCCCTTHHHHHHHHHHHST--TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHH
T ss_pred HHcC-CCCChHHHHHHHHHHHhcC--CCCcHHHHHHHcCCh-----hHHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 763 22222222111111 223345556554432 35666654 57899999999999873
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=157.36 Aligned_cols=253 Identities=18% Similarity=0.205 Sum_probs=158.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc---C---CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE---G---DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~---~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+|||+|||+|.||..+|..|+++|++|++|+|+ ++.+.+.+.+... + ..++..+++++++ .. +|+||+|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-GE---QDVVIVA 77 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-CC---CSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-CC---CCEEEEe
Confidence 579999999999999999999999999999996 6677766543210 0 0012234566663 44 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCc------------------hhHHHHHHHHHHcCCeEEec------CCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY------------------ENTERREKAMAELGLLYLGM------GVSG 136 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~------------------~~~~~~~~~l~~~g~~~v~~------pvsg 136 (474)
||+. +++++++.+.+.+.++++||.+.|+.+ ...+.+.+.+... +++.+ ...+
T Consensus 78 vk~~-~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~--~v~~gv~~~~a~~~~ 154 (335)
T 3ghy_A 78 VKAP-ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTR--HVLGCVVHLTCATVS 154 (335)
T ss_dssp CCHH-HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGG--GEEEEEECCCEEESS
T ss_pred CCch-hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcc--cEEEEEEEEEEEEcC
Confidence 9984 899999999999999999999999852 1122333433221 22221 1111
Q ss_pred CcccccCCC-ccccC----CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH-----------------
Q 011931 137 GEEGARHGP-SLMPG----GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN----------------- 194 (474)
Q Consensus 137 g~~~a~~G~-~i~~g----g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N----------------- 194 (474)
.......+. .+.+| .+.+..+.+..+|+..+.+ +....+.-...+.|++.|
T Consensus 155 pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~ 227 (335)
T 3ghy_A 155 PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQ-------AECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRI 227 (335)
T ss_dssp TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCE-------EEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHH
T ss_pred CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCC-------cEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHH
Confidence 111111222 23333 3456778888999887765 344445555666775544
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCc
Q 011931 195 ----GIEYGDMQLIAEAYDVLKSVGKLTNE-ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKG 269 (474)
Q Consensus 195 ----~~~~~~~~~i~Ea~~l~~~~G~l~~~-~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~ 269 (474)
.....+..++.|+..++++.| ++.+ ++.+++...... .....++.+++...+. ...+|.+..
T Consensus 228 ~~~~~~~~l~~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~--~~~~sSM~qD~~~gr~----~tEid~i~G------ 294 (335)
T 3ghy_A 228 LDDPLVSAFCLAVMAEAKAIGARIG-CPIEQSGEARSAVTRQL--GAFKTSMLQDAEAGRG----PLEIDALVA------ 294 (335)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHTTT-CCCCSCHHHHHHHHHTT--CSCCCTTTC-----CC----CCCHHHHTH------
T ss_pred hcChHHHHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHhcc--CCCCcHHHHHHHcCCC----CchHHHHhh------
Confidence 245667789999999999998 7642 222222211111 1122344555544320 146777765
Q ss_pred cHHHHHHHHHHcCCCcccHHH
Q 011931 270 TGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 270 tg~~~~~~a~~~gv~~p~~~~ 290 (474)
+.++.|+++|+|+|..+.
T Consensus 295 ---~vv~~a~~~gv~~P~~~~ 312 (335)
T 3ghy_A 295 ---SVREIGLHVGVPTPQIDT 312 (335)
T ss_dssp ---HHHHHHHHHTCCCHHHHH
T ss_pred ---HHHHHHHHhCCCCCHHHH
Confidence 578999999999999843
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-17 Score=152.35 Aligned_cols=161 Identities=14% Similarity=0.185 Sum_probs=118.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+||||+|||+|.||..+|..|+++|++|++ |||++++++++.+... +....+..+.++. +|+||++||+.
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g------~~~~~~~~~~~~~---aDvVilavp~~ 92 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG------ASVKAVELKDALQ---ADVVILAVPYD 92 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT------TTEEECCHHHHTT---SSEEEEESCGG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC------CCcccChHHHHhc---CCEEEEeCChH
Confidence 468999999999999999999999999998 9999999988876532 3334455555666 99999999974
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCc------------hhHHHHHHHHHHcCCeEE------ecCCCC-CcccccCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWY------------ENTERREKAMAELGLLYL------GMGVSG-GEEGARHGP 145 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~------------~~~~~~~~~l~~~g~~~v------~~pvsg-g~~~a~~G~ 145 (474)
.+.+++.++.+ + ++++|||+++..+ ...+.+.+.+. +..++ .+++.. ++. ...++
T Consensus 93 -~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~~v~~~g~~-~~~~~ 166 (220)
T 4huj_A 93 -SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP--GAKVVKAFNTLPAAVLAADPD-KGTGS 166 (220)
T ss_dssp -GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST--TCEEEEESCSSCHHHHTSCSB-CSSCE
T ss_pred -HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC--CCCEEECCCCCCHHHhhhCcc-cCCCC
Confidence 78888888776 5 6899999998763 14455555543 22333 223333 322 22233
Q ss_pred --ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHH
Q 011931 146 --SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188 (474)
Q Consensus 146 --~i~~gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~ 188 (474)
.++.|.++++.+.++++|+.+|.+ ++++|+.+.|..
T Consensus 167 ~~v~~~g~~~~~~~~v~~l~~~~G~~-------~~~~G~l~~a~~ 204 (220)
T 4huj_A 167 RVLFLSGNHSDANRQVAELISSLGFA-------PVDLGTLAASGP 204 (220)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCE-------EEECCSHHHHHH
T ss_pred eeEEEeCCCHHHHHHHHHHHHHhCCC-------eEeeCChhhcch
Confidence 345566889999999999999987 589999887754
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-17 Score=157.90 Aligned_cols=183 Identities=9% Similarity=0.058 Sum_probs=122.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
||||||||+|.||..|+..|+++ ++| .+|||++++.+++.+.. +. .+.+++++++. +|+||+|||+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------g~-~~~~~~~~~~~---~DvVilav~~~- 69 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------GG-KAATLEKHPEL---NGVVFVIVPDR- 69 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------CC-CCCSSCCCCC------CEEECSCTT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------CC-ccCCHHHHHhc---CCEEEEeCChH-
Confidence 57999999999999999999988 999 59999999988876543 13 45667776665 99999999997
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCccccc--CCCccccCCCHHHHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGAR--HGPSLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~--~G~~i~~gg~~~~~~~v~~ll 163 (474)
.+.+++.++. .++++||++|++.+....+.. ..+..+...++++++.... .+..++++++++.++.++++|
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 142 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHH
Confidence 5777776654 578999999987665432111 1111223346666554333 333567778888899999999
Q ss_pred HHHhccCCCCCCceEEeCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 164 LKVAAQVPDSGPCVTYVSKGGSG---NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g~~g~g---~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
+.+|.+ ++++++.+.. ...+++.|.+. .++.|+..++.+.| ++.+
T Consensus 143 ~~lG~~-------~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~G-l~~~ 190 (276)
T 2i76_A 143 EEISGK-------YFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLG-LDEP 190 (276)
T ss_dssp HHHCSC-------EEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTT-CSCH
T ss_pred HHhCCC-------EEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CChH
Confidence 999965 4788764422 23466666543 35678888899898 9987
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-18 Score=157.24 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=114.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.|+|+|||+|.||..+|.+|.+.|++|++|||+++ .+.+...+ +..+ ++.++++. +|+||++||+. +
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g-------~~~~-~~~~~~~~---aDvVilav~~~-~ 85 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRG-------AEVL-CYSEAASR---SDVIVLAVHRE-H 85 (201)
Confidence 46899999999999999999999999999999987 44443322 3334 67777776 99999999986 6
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchh------HHHHHHHHHHcCCeEEe-c---CCCCCcccccCCC--ccccCCCHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYEN------TERREKAMAELGLLYLG-M---GVSGGEEGARHGP--SLMPGGSFE 154 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~------~~~~~~~l~~~g~~~v~-~---pvsgg~~~a~~G~--~i~~gg~~~ 154 (474)
++.++ ++.+ +.++++|||++++.+.. .+.+.+.+.. ...+. + |......+...|. .+++|++++
T Consensus 86 ~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~--~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~ 161 (201)
T 2yjz_A 86 YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG--AHVVKAFNTISAWALQSGTLDASRQVFVCGNDSK 161 (201)
Confidence 77776 4544 44789999999998632 1222222211 11111 1 1111111222222 577888999
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH
Q 011931 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMI 192 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v 192 (474)
.++.++++|+.+|.+ ++++|+.|.|..+|.+
T Consensus 162 ~~~~v~~ll~~~G~~-------~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 162 AKDRVMDIARTLGLT-------PLDQGSLVAAKEIENY 192 (201)
Confidence 999999999999987 4899999999998865
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-15 Score=145.86 Aligned_cols=257 Identities=13% Similarity=0.152 Sum_probs=161.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CCC---CccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GDL---PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~~~---~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+.+.+... +.. .+..++++++ +.. +|+||+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~---~D~vil 75 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGP---MDLVLV 75 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCC---CSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCC---CCEEEE
Confidence 4799999999999999999999999999999986 36665543210 000 1223345554 444 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCC-ccccC----
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPG---- 150 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~-~i~~g---- 150 (474)
+||+. +++++++.+.+.+.++++||.+.|+.. ..+.+.+.+... ++.++.+-..+.-.....|+ .+.+|
T Consensus 76 avk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~-~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 76 GLKTF-ANSRYEELIRPLVEEGTQILTLQNGLG-NEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp CCCGG-GGGGHHHHHGGGCCTTCEEEECCSSSS-HHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSC
T ss_pred ecCCC-CcHHHHHHHHhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCC
Confidence 99985 788999999999999999999999873 223444444322 12222232222111112223 33333
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 011931 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYD 209 (474)
Q Consensus 151 g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~---------------------~~~~~~~~i~Ea~~ 209 (474)
.+.+..+.+.++|+..+.+ +....+.-...+-|++.|. ....+..++.|+..
T Consensus 154 ~~~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~ 226 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAGVD-------CRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIA 226 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCC-------cEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHH
Confidence 3466778888999887754 3444456666677776664 33446678899999
Q ss_pred HHHHhC---CCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcc
Q 011931 210 VLKSVG---KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAP 286 (474)
Q Consensus 210 l~~~~G---~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p 286 (474)
++++.| .++.+.+..++....... ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|
T Consensus 227 va~a~G~~~~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P 290 (312)
T 3hn2_A 227 GANAQGLATFIADGYVDDMLEFTDAMG--EYKPSMEIDREEGRP-----LEIAAIFR---------TPLAYGAREGIAMP 290 (312)
T ss_dssp HHHTSCCSSCCCTTHHHHHHHHHTTSC--SCCCHHHHHHHTTCC-----CCHHHHTH---------HHHHHHHHTTCCCH
T ss_pred HHHHcCCccCCCHHHHHHHHHHHhcCC--CCCchHHHHHHhCCC-----ccHHHHhh---------HHHHHHHHhCCCCC
Confidence 999886 234333333333222211 122345556554332 46777754 57899999999999
Q ss_pred cHHHHHHH
Q 011931 287 TIEERVEA 294 (474)
Q Consensus 287 ~~~~r~~~ 294 (474)
..+.=+..
T Consensus 291 ~~~~l~~l 298 (312)
T 3hn2_A 291 RVEMLATL 298 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98554333
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=148.33 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=133.7
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++++|+||| +|.||.++|..|++.|++|++|||+++. ++.+++.. +|+||+|||+.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~---aDvVilavp~~ 76 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------------------VAESILAN---ADVVIVSVPIN 76 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------GHHHHHTT---CSEEEECSCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------------------CHHHHhcC---CCEEEEeCCHH
Confidence 346899999 9999999999999999999999998641 34455666 99999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCcccccCCC-cccc-CCCHHHHHHHHH
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMP-GGSFEAYKYIED 161 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~-pvsgg~~~a~~G~-~i~~-gg~~~~~~~v~~ 161 (474)
.+.+++.++.+.++++.+|+|++++.....+.+.+. .+.++++. |++|.+.....|. .++. +.+++.++.+++
T Consensus 77 -~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~ 152 (298)
T 2pv7_A 77 -LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLE 152 (298)
T ss_dssp -GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHH
T ss_pred -HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHH
Confidence 699999999999999999999988875544444332 34678874 8887765555676 4443 447888999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011931 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (474)
Q Consensus 162 ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~ 224 (474)
+|+.+|.+ ++++++......++++.+.-.+.... +.+++ ...| ++.++..+
T Consensus 153 l~~~~G~~-------~~~~~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g-~~~~~~~~ 203 (298)
T 2pv7_A 153 QIQIWGAK-------IYQTNATEHDHNMTYIQALRHFSTFA-NGLHL---SKQP-INLANLLA 203 (298)
T ss_dssp HHHHTTCE-------EEECCHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSS-CCHHHHHH
T ss_pred HHHHcCCE-------EEECCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcC-CCHHHHHh
Confidence 99999976 46777666677777777765443332 23332 2356 77765544
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=149.36 Aligned_cols=250 Identities=16% Similarity=0.116 Sum_probs=162.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----cCCC---CccccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----EGDL---PLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~~~~---~~~~~~s~~e~~~~l~~~dvIi 78 (474)
+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+.+.+.. .+.. .+..+.+++++.+. +|+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~---~DlVi 76 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK---PDCTL 76 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC---CSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC---CCEEE
Confidence 4799999999999999999999999999999986 3556554310 0000 12234566666544 99999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc------ccccCCC-cccc--
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE------EGARHGP-SLMP-- 149 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~------~~a~~G~-~i~~-- 149 (474)
+|||.. +++++++.+.+.+.++++||.+.++.... +.+.+.+... .++.+++..+. +-...++ .+.+
T Consensus 77 lavK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~ 152 (320)
T 3i83_A 77 LCIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGN 152 (320)
T ss_dssp ECCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEec
Confidence 999996 67889999999999999999999886322 3344444322 34444433211 1111223 3333
Q ss_pred --CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH--------------------HHHHHHHHHHH
Q 011931 150 --GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI--------------------EYGDMQLIAEA 207 (474)
Q Consensus 150 --gg~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~--------------------~~~~~~~i~Ea 207 (474)
+.+.+..+.+.++|+.-+.+ +.+..+.-...+.|++.|.. ...+..++.|+
T Consensus 153 ~~~~~~~~~~~l~~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~ 225 (320)
T 3i83_A 153 YPGGVSERVKTLAAAFEEAGID-------GIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEI 225 (320)
T ss_dssp SSSCCCHHHHHHHHHHHHTTSC-------EEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCCCC-------ceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHH
Confidence 34566778889999887765 35555677777888877632 23456789999
Q ss_pred HHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCc
Q 011931 208 YDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 285 (474)
Q Consensus 208 ~~l~~~~G~l~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~ 285 (474)
..++++.| ++.+ .+..++....... ....++.+++...+. ..+|.+.. +.++.|+++|+|+
T Consensus 226 ~~va~a~G-~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~ 288 (320)
T 3i83_A 226 RAVAAANG-HPLPEDIVEKNVASTYKMP--PYKTSMLVDFEAGQP-----METEVILG---------NAVRAGRRTRVAI 288 (320)
T ss_dssp HHHHHHTT-CCCCTTHHHHHHHHHHHSC--CCCCHHHHHHHHTCC-----CCHHHHTH---------HHHHHHHHTTCCC
T ss_pred HHHHHHcC-CCCChHHHHHHHHHHhcCC--CCCCcHHHHHHhCCC-----chHHHHcc---------HHHHHHHHhCCCC
Confidence 99999998 7632 2222222111111 112244455554332 35777755 5789999999999
Q ss_pred ccHH
Q 011931 286 PTIE 289 (474)
Q Consensus 286 p~~~ 289 (474)
|..+
T Consensus 289 P~~~ 292 (320)
T 3i83_A 289 PHLE 292 (320)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 9983
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=165.13 Aligned_cols=190 Identities=14% Similarity=0.206 Sum_probs=134.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCCC----------CccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGDL----------PLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~~----------~~~~~~s~~e~~ 68 (474)
.++||||||+|.||.+||.+|+++||+|++||+++++++...+.. ...|.. +++.++++ +.+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence 457899999999999999999999999999999999877642210 000000 13455666 555
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCcccccC
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~~~a~~ 143 (474)
+. ||+||+|||++.+++ .++.++.+.++++.+|++.+++.+.+ ++++.+.. .|.||++ |+. .
T Consensus 392 ~~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~~~~~ig~hf~~-P~~-------~ 458 (715)
T 1wdk_A 392 GN---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFN-PVH-------M 458 (715)
T ss_dssp GG---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCS-STT-------T
T ss_pred CC---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcCccceEEEEccC-Ccc-------c
Confidence 65 999999999986665 46688888899999998776665443 33332211 2445544 332 2
Q ss_pred CC--ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011931 144 GP--SLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (474)
Q Consensus 144 G~--~i~~gg--~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~ 219 (474)
++ .++.|. ++++++.+.++++.+|.. ++++++. .|. +.|.+.. ..++|++.++++ | +++
T Consensus 459 ~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~ 521 (715)
T 1wdk_A 459 MPLVEVIRGEKSSDLAVATTVAYAKKMGKN-------PIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-G-VDF 521 (715)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-T-CCH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHhCCE-------eEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-C-CCH
Confidence 33 355554 899999999999999976 4777763 444 3455443 467999999997 8 999
Q ss_pred HHHHHHH
Q 011931 220 EELQNVF 226 (474)
Q Consensus 220 ~~~~~~~ 226 (474)
+++.+++
T Consensus 522 ~~id~~~ 528 (715)
T 1wdk_A 522 VRIDKVM 528 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=164.58 Aligned_cols=191 Identities=13% Similarity=0.179 Sum_probs=135.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcC----------CCCccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEG----------DLPLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~----------~~~~~~~~s~~e~~ 68 (474)
.++||+|||+|.||.+||.+|+++||+|++||++++++++..+.. ...+ ..+++.++++ +.+
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 389 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESF 389 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence 467899999999999999999999999999999999877653310 0000 0024556666 344
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCcccccC
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARH 143 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~~~a~~ 143 (474)
+. ||+||+|||+...++ .++.++.+.++++.+|++.+++.+.+ ++++.+.. .|.||++ |+..
T Consensus 390 ~~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~p~~~iG~hf~~-P~~~------- 456 (725)
T 2wtb_A 390 RD---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN--KIGERTKSQDRIVGAHFFS-PAHI------- 456 (725)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHTTTCSCTTTEEEEEECS-STTT-------
T ss_pred CC---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcCCCCEEEecCCC-Cccc-------
Confidence 55 999999999986654 56688888899999998776665543 23332211 2556655 4332
Q ss_pred CC--ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011931 144 GP--SLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (474)
Q Consensus 144 G~--~i~~gg--~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~ 219 (474)
++ .++.|. ++++++.+.++++.+|.. ++++++. .|. +.|.+.. ..++|++.++++ | +++
T Consensus 457 ~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~ 519 (725)
T 2wtb_A 457 MPLLEIVRTNHTSAQVIVDLLDVGKKIKKT-------PVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-G-ADP 519 (725)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-T-CCH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHhCCE-------EEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-C-CCH
Confidence 23 345553 899999999999999976 4777763 444 3455443 468999999998 8 999
Q ss_pred HHHHHHHH
Q 011931 220 EELQNVFT 227 (474)
Q Consensus 220 ~~~~~~~~ 227 (474)
+++.+++.
T Consensus 520 e~id~~~~ 527 (725)
T 2wtb_A 520 YLIDRAIS 527 (725)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999873
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=153.73 Aligned_cols=191 Identities=15% Similarity=0.226 Sum_probs=133.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-----------hhhcC----CCCccccCCHHHHHhh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----------AKKEG----DLPLFGFRDPESFVNS 70 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------~~~~~----~~~~~~~~s~~e~~~~ 70 (474)
.+++|+|||+|.||.+||..|+++|++|++||+++++++...+. +.... ......+++++ .++.
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 114 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELST 114 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHCC
Confidence 35789999999999999999999999999999999887765432 10000 00122345663 3444
Q ss_pred cCCCcEEEEecCCChhH-HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCCcccccCCC
Q 011931 71 IQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARHGP 145 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~v~~pvsgg~~~a~~G~ 145 (474)
||+||+|||...++ ..++.++.+.++++.+|++.+++. ..+ ++++.+.. .|.||+ .|+.. ++
T Consensus 115 ---aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~-~~~-~la~~~~~~~~~ig~hf~-~P~~~-------~~ 181 (463)
T 1zcj_A 115 ---VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL-NVD-DIASSTDRPQLVIGTHFF-SPAHV-------MR 181 (463)
T ss_dssp ---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS-CHH-HHHTTSSCGGGEEEEEEC-SSTTT-------CC
T ss_pred ---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc-CHH-HHHHHhcCCcceEEeecC-CCccc-------ce
Confidence 99999999987544 456688888899999999844443 333 45443321 255665 44432 23
Q ss_pred --ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011931 146 --SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (474)
Q Consensus 146 --~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~ 221 (474)
.++.| ++++.++.+.++++.+|.. ++++++ ..|. +.|.+... .++|++.++++ | +++++
T Consensus 182 lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G-~~~~~ 244 (463)
T 1zcj_A 182 LLEVIPSRYSSPTTIATVMSLSKKIGKI-------GVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-G-SKPED 244 (463)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-T-CCHHH
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhCCE-------EEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-C-CCHHH
Confidence 34554 6899999999999999965 477775 3444 44555443 45999999887 8 99999
Q ss_pred HHHHHH
Q 011931 222 LQNVFT 227 (474)
Q Consensus 222 ~~~~~~ 227 (474)
+.+++.
T Consensus 245 id~~~~ 250 (463)
T 1zcj_A 245 VDGVLE 250 (463)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=145.61 Aligned_cols=194 Identities=15% Similarity=0.190 Sum_probs=138.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC----CC-------CccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG----DL-------PLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~----~~-------~~~~~~s~~e~~ 68 (474)
..||+|||+|.||..+|..++.+|++|++||++++.+++..+... ..+ .. ++..++++++++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 458999999999999999999999999999999987654432211 000 00 345667888877
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~ 142 (474)
+. ||+||.+||..-+++ +++.+|.+.++++.|+...|++.+.+ ++++.+... |.||+..| +..-.+
T Consensus 86 ~~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is--~ia~~~~~p~r~ig~HffNP~~~m~LVE--- 157 (319)
T 3ado_A 86 EG---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS--KLFTGLAHVKQCIVAHPVNPPYYIPLVE--- 157 (319)
T ss_dssp TT---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH--HHHTTCTTGGGEEEEEECSSTTTCCEEE---
T ss_pred cc---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch--hhhhhccCCCcEEEecCCCCccccchHH---
Confidence 77 999999999988777 45588888888888887777776543 344333221 55666543 222111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~ 220 (474)
++.| .+++.++.+..+++.+|.++ +.+-....|+. .|.+. ..+++|++.+.+..+ .+++
T Consensus 158 ----iv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~kd~pGFi----~NRl~---~~~~~EA~~lv~eGv-as~e 218 (319)
T 3ado_A 158 ----LVPHPETSPATVDRTHALMRKIGQSP-------VRVLKEIDGFV----LNRLQ---YAIISEAWRLVEEGI-VSPS 218 (319)
T ss_dssp ----EEECTTCCHHHHHHHHHHHHHTTCEE-------EECSSCCTTTT----HHHHH---HHHHHHHHHHHHTTS-SCHH
T ss_pred ----hcCCCCCcHHHHHHHHHHHHHhCCcc-------CCcCCCCCCEe----HHHHH---HHHHHHHHHHHHhCC-CCHH
Confidence 4544 48999999999999999763 44444455654 45554 456699999999987 9999
Q ss_pred HHHHHHH
Q 011931 221 ELQNVFT 227 (474)
Q Consensus 221 ~~~~~~~ 227 (474)
+++.++.
T Consensus 219 dID~~~~ 225 (319)
T 3ado_A 219 DLDLVMS 225 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-16 Score=143.17 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=112.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|+|+|||+|.||..+|..|+++|++|++|||+++ .++. +|+||+|+|+ .
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------------------~~~~---aD~vi~av~~-~ 68 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------------------ATTL---GEIVIMAVPY-P 68 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------------------CSSC---CSEEEECSCH-H
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------Hhcc---CCEEEEcCCc-H
Confidence 467999999999999999999999999999998854 1123 8999999995 5
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCc-h--------h----HHHHHHHHHHcCCeEEe------cCCCCCcccccCCC-
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWY-E--------N----TERREKAMAELGLLYLG------MGVSGGEEGARHGP- 145 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~-~--------~----~~~~~~~l~~~g~~~v~------~pvsgg~~~a~~G~- 145 (474)
.++++++++.+.++ +++||+++++.+ . . .+.+.+.+. +.+++. +|..+.+.....++
T Consensus 69 ~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~ 145 (209)
T 2raf_A 69 ALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPT 145 (209)
T ss_dssp HHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEEC
T ss_pred HHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCc
Confidence 88999999888887 999999999654 1 1 344444432 467777 33322222111123
Q ss_pred ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH
Q 011931 146 SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI 196 (474)
Q Consensus 146 ~i~~gg-~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~ 196 (474)
.++++| +++..+.++++|+.+|.+ ++++++.+.+..+|++.|.+
T Consensus 146 ~~~~~g~~~~~~~~v~~ll~~~G~~-------~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 146 TVLVAGNDDSAKQRFTRALADSPLE-------VKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp EEEEEESCHHHHHHHHHHTTTSSCE-------EEEEESGGGHHHHHHHHHHH
T ss_pred eeEEcCCCHHHHHHHHHHHHHcCCc-------eEeCCCHhHHHHhcchHHHH
Confidence 445555 568899999999999976 58899999999999987764
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=145.26 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=117.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++|+|+|||+|.||..++..|++.|++|+++||++++.+++.+.+ +... +.+++++. +|+||+|+|+.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~-~~~~~~~~---~DvVi~av~~~- 94 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA-------AQVT-FQEEAVSS---PEVIFVAVFRE- 94 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT-------SEEE-EHHHHTTS---CSEEEECSCGG-
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------Ccee-cHHHHHhC---CCEEEECCChH-
Confidence 457999999999999999999999999999999998877665432 3333 67777666 99999999974
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHH----HHHHHHH--cCCeEEec--CCCCCc--ccccCCC--ccccCCCH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTER----REKAMAE--LGLLYLGM--GVSGGE--EGARHGP--SLMPGGSF 153 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~----~~~~l~~--~g~~~v~~--pvsgg~--~~a~~G~--~i~~gg~~ 153 (474)
.++.+++ +.+.+ ++++|||++++.+..+.. ..+.+.+ .+.+++.+ ++++.. ++...|. .++.|+++
T Consensus 95 ~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~ 172 (215)
T 2vns_A 95 HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQP 172 (215)
T ss_dssp GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCH
T ss_pred HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCH
Confidence 5666664 55555 899999999998654321 1122221 12233321 111110 1222344 56778899
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH
Q 011931 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMI 192 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v 192 (474)
+.++.++++|+.+|.+ ++++|+.|+|+.++..
T Consensus 173 ~~~~~v~~ll~~~G~~-------~~~~g~~~~~~~~e~~ 204 (215)
T 2vns_A 173 EAKRAVSEMALAMGFM-------PVDMGSLASAWEVEAM 204 (215)
T ss_dssp HHHHHHHHHHHHTTCE-------EEECCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHcCCc-------eEeecchhhhhHhhhh
Confidence 9999999999999976 5899999999987643
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-15 Score=146.77 Aligned_cols=246 Identities=14% Similarity=0.145 Sum_probs=152.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~vp~~~ 85 (474)
+|||+|||+|.||+.+|..|+++|++|++|+|+++.++.....+. .......++.+.+ .. +|+||+|||+.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~---~D~vilavk~~- 73 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHA----PAQDIVVKGYEDVTNT---FDVIIIAVKTH- 73 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTS----CCEEEEEEEGGGCCSC---EEEEEECSCGG-
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCe----eccceecCchHhcCCC---CCEEEEeCCcc-
Confidence 579999999999999999999999999999999764431111110 0111222333332 33 89999999985
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (474)
+++++++.+.+.+.++++||...++...... +... ++.++.+-..| |..+..++ .+.. ++.+..+.+.
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~ 146 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKG-DVVTHFRDYQLRI-QDNALTRQFR 146 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcC-CCEEEECCCEEec-CccHHHHHHH
Confidence 8999999999999889999999998754332 2111 11111111111 11111122 2222 3445566777
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhCCCC--
Q 011931 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG--------------------IEYGDMQLIAEAYDVLKSVGKLT-- 218 (474)
Q Consensus 161 ~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~--------------------~~~~~~~~i~Ea~~l~~~~G~l~-- 218 (474)
++|+.-+.+ +.+..+.-...+-|++.|. ....+..++.|+..++++.| ++
T Consensus 147 ~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G-~~l~ 218 (294)
T 3g17_A 147 DLVQDSQID-------IVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEG-LNFS 218 (294)
T ss_dssp HHTTTSSCE-------EEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHhCCCc-------eEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcC-CCCC
Confidence 777765543 3555566677778887775 23345678899999999998 75
Q ss_pred HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHH
Q 011931 219 NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEE 290 (474)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~ 290 (474)
++.+.+.+........ ....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|..+.
T Consensus 219 ~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 275 (294)
T 3g17_A 219 EQTVDTIMTIYQGYPD-EMGTSMYYDIVHQQP-----LEVEAIQG---------FIYRRAREHNLDTPYLDT 275 (294)
T ss_dssp HHHHHHHHHHHHTSCT-TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CCCCcHHHHHHcCCC-----ccHHHhhh---------HHHHHHHHhCCCCChHHH
Confidence 4444444433222111 122345556554432 35666654 578999999999999844
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-14 Score=131.15 Aligned_cols=156 Identities=10% Similarity=0.110 Sum_probs=115.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..|||+|||+|.||.+||.+|.++||+|++||+.. + +.. +| |+|||+.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-------------------------~-~~~---aD--ilavP~~- 52 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-------------------------D-IRD---FE--LVVIDAH- 52 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-------------------------G-GGG---CS--EEEECSS-
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-------------------------H-hcc---CC--EEEEcHH-
Confidence 45799999999999999999999999999999830 1 233 89 9999997
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCccccCCCHHHHHHHHHHHH
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (474)
.+.+++.++.+.+.++++|+|+|++..... .+.+..+|.+|++ .|+.|.+ .++.++++++++.++++++
T Consensus 53 ai~~vl~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~-------~~i~a~d~~a~~~l~~L~~ 122 (232)
T 3dfu_A 53 GVEGYVEKLSAFARRGQMFLHTSLTHGITV---MDPLETSGGIVMSAHPIGQDR-------WVASALDELGETIVGLLVG 122 (232)
T ss_dssp CHHHHHHHHHTTCCTTCEEEECCSSCCGGG---GHHHHHTTCEEEEEEEEETTE-------EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCCc-------eeeeCCCHHHHHHHHHHHH
Confidence 899999999999999999999876654432 2334467889986 6886543 3444558889999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011931 165 KVAAQVPDSGPCVTYVSKGGSGNF-VKMIHNGIEYGDMQLIAEAYDVLKS 213 (474)
Q Consensus 165 ~lg~~~~~~~~~~~~~g~~g~g~~-~K~v~N~~~~~~~~~i~Ea~~l~~~ 213 (474)
.+|.+ ++++++...-.+ .-.+| ......++.++..+.+.
T Consensus 123 ~lG~~-------vv~~~~~~hd~~~AAvsh---~nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 123 ELGGS-------IVEIADDKRAQLAAALTY---AGFLSTLQRDASYFLDE 162 (232)
T ss_dssp HTTCE-------ECCCCGGGHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HhCCE-------EEEeCHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 99987 467776443333 11222 33345666777777643
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=147.59 Aligned_cols=117 Identities=9% Similarity=0.145 Sum_probs=96.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhhCCCCCCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNADLANL 386 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~gcii~s~ll~~~~~~~~~~~~l~~l 386 (474)
+.+++||+||+||++++++|+.++|+|.++++ ..++|..+++++ |+.| .++|++++...+++.+++.....
T Consensus 177 ~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~-----~~Gld~~~l~~v~~~w~~G-~~~S~l~e~~~~~l~~~D~~g~~ 250 (484)
T 4gwg_A 177 DEGAGHFVKMVHNGIEYGDMQLICEAYHLMKD-----VLGMAQDEMAQAFEDWNKT-ELDSFLIEITANILKFQDTDGKH 250 (484)
T ss_dssp ETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhcCCccCCc
Confidence 46899999999999999999999999999986 245887666555 9998 68999999999999864433456
Q ss_pred ccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011931 387 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 434 (474)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~ 434 (474)
++|.+.+..-+++++ +|++++|+++|+|+|+|++||. ++++++.+|
T Consensus 251 ~ld~i~d~~~~kgtG--~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r 298 (484)
T 4gwg_A 251 LLPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDER 298 (484)
T ss_dssp SGGGSCCCCCSSCTT--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHhccccCcchH--HHHHHHHHHcCCCchHHHHHHHHHHHhhchHHH
Confidence 777777777789999 9999999999999999999996 444455443
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=136.15 Aligned_cols=193 Identities=15% Similarity=0.104 Sum_probs=124.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.|+|+|||+|.||.++|.+|.+.|++|++|||++++..+..... ++..+ +++++++. +|+||+|||+. .
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~------G~~~~-~~~e~~~~---aDvVilavp~~-~ 84 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH------GLKVA-DVKTAVAA---ADVVMILTPDE-F 84 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT------TCEEE-CHHHHHHT---CSEEEECSCHH-H
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC------CCEEc-cHHHHHhc---CCEEEEeCCcH-H
Confidence 46899999999999999999999999999999987633333221 24444 88888887 99999999986 6
Q ss_pred HHHHHH-HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccc-------cCCC-cc-cc--CCCH
Q 011931 87 VDETIK-TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGA-------RHGP-SL-MP--GGSF 153 (474)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a-------~~G~-~i-~~--gg~~ 153 (474)
...++. ++.+.++++++|+|+++.. . .+.......++.++. +| +| +..+ ..|. .+ .+ +.++
T Consensus 85 ~~~v~~~~i~~~l~~~~ivi~~~gv~---~-~~~~~~~~~~~~vv~~~P-~g-p~~a~~~l~~~G~g~~~ii~~~~~~~~ 158 (338)
T 1np3_A 85 QGRLYKEEIEPNLKKGATLAFAHGFS---I-HYNQVVPRADLDVIMIAP-KA-PGHTVRSEFVKGGGIPDLIAIYQDASG 158 (338)
T ss_dssp HHHHHHHHTGGGCCTTCEEEESCCHH---H-HTTSSCCCTTCEEEEEEE-SS-CSHHHHHHHHTTCCCCEEEEEEECSSS
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCch---h-HHHhhcCCCCcEEEeccC-CC-CchhHHHHHhccCCCeEEEEecCCCCH
Confidence 688888 9999999999999986421 1 221111123556665 35 32 2221 1255 33 33 3467
Q ss_pred HHHHHHHHHHHHHhc-cCCCCCCceEEeCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011931 154 EAYKYIEDILLKVAA-QVPDSGPCVTYVSKGGSGNFVKMIHN-GIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (474)
Q Consensus 154 ~~~~~v~~ll~~lg~-~~~~~~~~~~~~g~~g~g~~~K~v~N-~~~~~~~~~i~Ea~~l~~~~G~l~~~~~ 222 (474)
++.+.+..+++.+|. +. .++.+...........+.+ .+......+++.++..+.+.| ++++..
T Consensus 159 ~a~~~~~~l~~~lG~~~a-----gv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G-l~~~~a 223 (338)
T 1np3_A 159 NAKNVALSYACGVGGGRT-----GIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMA 223 (338)
T ss_dssp CHHHHHHHHHHHTTHHHH-----CEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHHcCCCcc-----ceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHH
Confidence 888999999999997 30 0244433222222333333 222223344455555556788 998765
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-14 Score=143.53 Aligned_cols=272 Identities=12% Similarity=-0.009 Sum_probs=161.3
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC--------cEEEEeCChHH-----HHHHHHhhhhcC---C----CCccccCCHHHHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF--------PISVYNRTTSK-----VDETVERAKKEG---D----LPLFGFRDPESFV 68 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~--------~V~v~dr~~~~-----~~~l~~~~~~~~---~----~~~~~~~s~~e~~ 68 (474)
||+|||.|.||++||..|+++|+ +|.+|.|+++. .+.+.....+.. + .++..++++++++
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 89999999999999999999875 49999998653 333332221110 0 0467788999998
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhH---HHHHHHHHH-cCCe--EEecCCCCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT---ERREKAMAE-LGLL--YLGMGVSGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~---~~~~~~l~~-~g~~--~v~~pvsgg~~~a~ 142 (474)
+. +|+||++||. +.++.+++++.+.+.++.++|.++.+....+ +.+.+.+.+ .+.. ++..|-. ..+-+.
T Consensus 116 ~~---ad~ii~avPs-~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~-A~EVa~ 190 (391)
T 4fgw_A 116 KD---VDIIVFNIPH-QFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANI-ATEVAQ 190 (391)
T ss_dssp TT---CSEEEECSCG-GGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCC-HHHHHT
T ss_pred hc---CCEEEEECCh-hhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCch-HHHhhc
Confidence 88 9999999998 4899999999999999999999998864222 122222222 2332 3333422 233334
Q ss_pred CCC-ccccCC----------CHHHHHHHHHHHHHHhccC-----------CCCCCceEEeCCchhHHHHHHHHHHHHHHH
Q 011931 143 HGP-SLMPGG----------SFEAYKYIEDILLKVAAQV-----------PDSGPCVTYVSKGGSGNFVKMIHNGIEYGD 200 (474)
Q Consensus 143 ~G~-~i~~gg----------~~~~~~~v~~ll~~lg~~~-----------~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~ 200 (474)
.-| .+.++. ++...+.++.+|..=-.++ ...-|+|+-++. |...-+++-.|+-.+.+
T Consensus 191 ~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAa-Gi~dGlg~G~NakAALi 269 (391)
T 4fgw_A 191 EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGC-GFVEGLGWGNNASAAIQ 269 (391)
T ss_dssp TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHH-HHHhcCCCCCCHHHHHH
Confidence 444 333322 2222355666663211110 001122332222 44445567789999999
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCC-CcchHHHHhhhc--CCCccHHHHH
Q 011931 201 MQLIAEAYDVLKSV--GKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKG-DGYLVDKVLDKT--GMKGTGKWTV 275 (474)
Q Consensus 201 ~~~i~Ea~~l~~~~--G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~-~~~~~~~i~~~~--~~k~tg~~~~ 275 (474)
...++|+.+|+... ||-++..+..+ .|.++-.+.-..++..+....+. .+..++.+.+.+ +|+-+|..++
T Consensus 270 trGl~Em~rlg~al~~~g~~~tt~~gl-----aGlGDLi~Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta 344 (391)
T 4fgw_A 270 RVGLGEIIRFGQMFFPESREETYYQES-----AGVADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITC 344 (391)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHST-----TTHHHHHHHHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceeecCC-----CcccceeEEecCCccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHH
Confidence 99999999999998 31333333211 12222111100011111000111 234566666665 6888998887
Q ss_pred HH----HHHcCC--CcccHHHH
Q 011931 276 QQ----AADLSV--AAPTIEER 291 (474)
Q Consensus 276 ~~----a~~~gv--~~p~~~~r 291 (474)
+. ++++|+ .+|++++=
T Consensus 345 ~~v~~l~~~~~v~~emPI~~~v 366 (391)
T 4fgw_A 345 KEVHEWLETCGSVEDFPLFEAV 366 (391)
T ss_dssp HHHHHHHHHHTCSTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHH
Confidence 54 778899 78988553
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=136.98 Aligned_cols=251 Identities=14% Similarity=0.039 Sum_probs=142.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--------cCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--------FRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--------~~s~~e~~~~l~~~dvIi 78 (474)
+|||+|||+|.||+.+|..|+ +|++|++|+|++++.+.+.+.+.. +.. .....+... .+|+||
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~-----~~~~~~~~~~~~~~~~~~~~---~~D~vi 72 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIR-----LYKGGEEFRADCSADTSINS---DFDLLV 72 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEE-----EEETTEEEEECCEEESSCCS---CCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCce-----EecCCCeecccccccccccC---CCCEEE
Confidence 579999999999999999999 999999999999888888765421 110 000012223 499999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC------CCC-Cc-ccccCCCccccC
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG------VSG-GE-EGARHGPSLMPG 150 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p------vsg-g~-~~a~~G~~i~~g 150 (474)
++||+. ++++++..+.+. .++. ||...|+.... +.+.+.+. .-+++.+- ..+ |. .....|. +.+|
T Consensus 73 lavK~~-~~~~~l~~l~~~-~~~~-ivs~~nGi~~~-e~l~~~~~--~~~vl~g~~~~~a~~~~pg~v~~~~~g~-~~iG 145 (307)
T 3ego_A 73 VTVKQH-QLQSVFSSLERI-GKTN-ILFLQNGMGHI-HDLKDWHV--GHSIYVGIVEHGAVRKSDTAVDHTGLGA-IKWS 145 (307)
T ss_dssp ECCCGG-GHHHHHHHTTSS-CCCE-EEECCSSSHHH-HHHHTCCC--SCEEEEEEECCEEEECSSSEEEEEECCC-EEEE
T ss_pred EEeCHH-HHHHHHHHhhcC-CCCe-EEEecCCccHH-HHHHHhCC--CCcEEEEEEeeceEECCCCEEEEeeeee-EEEE
Confidence 999985 789999888764 4555 89999987421 22222211 11222211 111 10 0111122 2222
Q ss_pred ---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH---------------------HHHHHHHHHH
Q 011931 151 ---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI---------------------EYGDMQLIAE 206 (474)
Q Consensus 151 ---g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~---------------------~~~~~~~i~E 206 (474)
++.+.++.+..+|..-+.+ +.+..+.-...+-|++.|.. ...+..++.|
T Consensus 146 ~~~~~~~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E 218 (307)
T 3ego_A 146 AFDDAEPDRLNILFQHNHSDFP-------IYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQE 218 (307)
T ss_dssp ECTTCCGGGGTTTTSSCCTTSC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHH
T ss_pred eCCCCcHHHHHHHHHhhhCCCC-------cEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHH
Confidence 2222222222222222221 34444566667778777742 3344567888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcc
Q 011931 207 AYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAP 286 (474)
Q Consensus 207 a~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p 286 (474)
+..+++.. +++.+.+-+....... .....++.+++.+.+. ..+|.+.. +.++.|+++|+|+|
T Consensus 219 ~~~va~~~---~~~~~~~~~~~~~~~~-~~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP 280 (307)
T 3ego_A 219 ACRILKLE---NEEKAWERVQAVCGQT-KENRSSMLVDVIGGRQ-----TEADAIIG---------YLLKEASLQGLDAV 280 (307)
T ss_dssp HHHHHTCS---CHHHHHHHHHHHHHHT-TTCCCHHHHHHHHTCC-----CSHHHHHH---------HHHHHHHHTTCCCH
T ss_pred HHHHHhcc---ChHHHHHHHHHHHHhc-CCCCchHHHHHHcCCc-----ccHHHhhh---------HHHHHHHHcCCCCc
Confidence 88887643 2333333221111111 1223345556554432 46788765 57899999999999
Q ss_pred cHHHHHHHHHhc
Q 011931 287 TIEERVEAAKVF 298 (474)
Q Consensus 287 ~~~~r~~~~~~~ 298 (474)
..+.-+..-+.+
T Consensus 281 ~~~~l~~li~~~ 292 (307)
T 3ego_A 281 HLEFLYGSIKAL 292 (307)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 985544444433
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-15 Score=144.97 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHC-CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
...++|+|||+|.||..++.+|++. |+ +|.+|||++++.+++.+.... ++..+.+++++++. +|+|++|+|
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~e~v~~---aDiVi~atp 205 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG----EVRVCSSVQEAVAG---ADVIITVTL 205 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS----CCEECSSHHHHHTT---CSEEEECCC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC----CeEEeCCHHHHHhc---CCEEEEEeC
Confidence 3457899999999999999999876 76 899999999999988875320 14567889999887 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe----cCC-CCCc---ccccCCC-ccccCCCH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG----MGV-SGGE---EGARHGP-SLMPGGSF 153 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~----~pv-sgg~---~~a~~G~-~i~~gg~~ 153 (474)
.. +.++.. +.+++|++|+++++..|.. +++.+.+..++..|+| +|+ +|.. .++..|+ ..|++|+.
T Consensus 206 ~~---~~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~ 279 (312)
T 2i99_A 206 AT---EPILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVK 279 (312)
T ss_dssp CS---SCCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSS
T ss_pred CC---CcccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCC
Confidence 64 233322 5688999999999888754 5666777778899999 677 4433 4455566 67777765
Q ss_pred H
Q 011931 154 E 154 (474)
Q Consensus 154 ~ 154 (474)
+
T Consensus 280 ~ 280 (312)
T 2i99_A 280 P 280 (312)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-11 Score=122.94 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=77.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHH-CCCcEEEEe---CChHHHHHHHHhhh------hcCC--C----Ccc-ccCCHHHHHh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAE-KGFPISVYN---RTTSKVDETVERAK------KEGD--L----PLF-GFRDPESFVN 69 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~-~G~~V~v~d---r~~~~~~~l~~~~~------~~~~--~----~~~-~~~s~~e~~~ 69 (474)
||||+|||+|.||..+|..|++ +|++|++|| |++++++.+.+... ..++ . ++. .++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4799999999999999999998 599999999 88888877443221 0000 0 122 4567888777
Q ss_pred hcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 70 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
. +|+||+|||+. ..+++++++.+.+.++++|++..+
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETTC
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 6 99999999986 689999999999999999998543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=134.16 Aligned_cols=192 Identities=15% Similarity=0.220 Sum_probs=133.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-----------hcC----CCCccccCCHHHHHhhc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------KEG----DLPLFGFRDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-----------~~~----~~~~~~~~s~~e~~~~l 71 (474)
..||||||+|.||..+|..++.+|++|+++|++++.++...+... ... ..++..+++.+++. .
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~- 393 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELS-T- 393 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGG-S-
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHh-h-
Confidence 468999999999999999999999999999999987654432110 000 00345566666543 3
Q ss_pred CCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCCcccccCCC
Q 011931 72 QKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGARHGP 145 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~p-vsgg~~~a~~G~ 145 (474)
||+||.+|+..-+++ +++.++.+.++++.|+...|++.+.+ ++++.+... |.||+..| ++.-.
T Consensus 394 --aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~--~ia~~~~~p~r~ig~HFfnP~~~m~LV------- 462 (742)
T 3zwc_A 394 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD--DIASSTDRPQLVIGTHFFSPAHVMRLL------- 462 (742)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEECCSSTTTCCEE-------
T ss_pred --CCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChH--HHHhhcCCccccccccccCCCCCCceE-------
Confidence 999999999998777 45588888899999998877776544 333332211 45555432 11111
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011931 146 SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (474)
Q Consensus 146 ~i~~g--g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~ 223 (474)
-++.| .+++.++.+..+.+.+++.+ +.+. ...|.++ |.+ ....++|++.+... | .+++++.
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lgK~p-------V~vk-d~pGFi~----NRi---~~~~~~ea~~l~~e-G-~~~~~id 525 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIGKIG-------VVVG-NCYGFVG----NRM---LAPYYNQGFFLLEE-G-SKPEDVD 525 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEE-------EECC-CSTTTTH----HHH---HHHHHHHHHHHHHT-T-CCHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCC-------cccC-CCCCccH----HHH---hhHHHHHHHHHHHc-C-CCHHHHH
Confidence 14444 48999999999999999763 5554 4556654 554 45566999998876 6 8999999
Q ss_pred HHHHh
Q 011931 224 NVFTE 228 (474)
Q Consensus 224 ~~~~~ 228 (474)
+++..
T Consensus 526 ~a~~~ 530 (742)
T 3zwc_A 526 GVLEE 530 (742)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=126.25 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=100.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+|||++++.+. +....+++++++. +|+|++++|....+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------~~~~~~l~ell~~---aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------------DVISESPADLFRQ---SDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------------SEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------------ccccCChHHHhhc---cCeEEEEeeccccc
Confidence 58999999999999999999999999999999764321 2345689999998 99999999987677
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~ 139 (474)
+.++ .+.++.+++|.+|||+|++.+.+...+.+.+++.++......|+..++
T Consensus 188 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 7666 667888999999999999999999999999998888777777776654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-12 Score=124.76 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=92.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|+.|...|++|++|||++++.+.+.+. ++... +++++++. +|+|++++|....
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~-~l~e~l~~---aDvVi~~vp~~~~ 223 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF-------QAEFV-STPELAAQ---SDFIVVACSLTPA 223 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT-------TCEEC-CHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhc-------CceeC-CHHHHHhh---CCEEEEeCCCChH
Confidence 4689999999999999999999999999999987765544322 23444 88888888 9999999998766
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
++.++ .++.+.++++.++|++|++.+.++..+.+.+++.++..
T Consensus 224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~g 267 (330)
T 2gcg_A 224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267 (330)
T ss_dssp TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccE
Confidence 66666 46777899999999999998888888988888765543
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=124.25 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=99.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|++|...|++|.+|||++...+.+.+.+ +....+++++++. +|+|++++|....
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~Plt~~ 233 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETG-------AKFVEDLNEMLPK---CDVIVINMPLTEK 233 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHC-------CEECSCHHHHGGG---CSEEEECSCCCTT
T ss_pred CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCC-------CeEcCCHHHHHhc---CCEEEECCCCCHH
Confidence 35899999999999999999999999999999875555444332 4556789999998 9999999998767
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
.+.++ .+.++.+++|.+|||++.+...+...+.+.|++..+......|+..+
T Consensus 234 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 286 (351)
T 3jtm_A 234 TRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286 (351)
T ss_dssp TTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCC
Confidence 77666 56778899999999999999999999999998876654444444443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=122.60 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=95.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|+.|...|++|++|||++++ +...+.+ +. ..+++++++. +|+|++++|....
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~~~l~~---aDvVil~vp~~~~ 217 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELN-------AE-FKPLEDLLRE---SDFVVLAVPLTRE 217 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC-------CE-ECCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC-------cc-cCCHHHHHhh---CCEEEECCCCChH
Confidence 468999999999999999999999999999999876 4333222 33 3478888888 9999999999876
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
++.++ .++.+.++++.+||++|++.+.++..+.+.+++..+......|++.
T Consensus 218 t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 269 (334)
T 2dbq_A 218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 (334)
T ss_dssp TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence 76666 4677889999999999999988888888888876665544445543
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=123.39 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=97.4
Q ss_pred cCcEEEEcccHhHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-++|||||+|.||+.+|+.|. ..|++|.+|||++++.+...+.+ +..+.+++++++. +|+|++++|...
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvVil~vp~~~ 232 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALG-------AERVDSLEELARR---SDCVSVSVPYMK 232 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCSG
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcC-------cEEeCCHHHHhcc---CCEEEEeCCCCh
Confidence 357999999999999999999 99999999999987655443322 3445588898888 999999999987
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
.++.++ .++++.++++.+|||++++.+.+...+.+.+++..+......+++.+
T Consensus 233 ~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 286 (348)
T 2w2k_A 233 LTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 286 (348)
T ss_dssp GGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred HHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence 677776 46777899999999999999888888988887755444445555543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=122.55 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=97.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|+++...|++|.+|||++.. +...+.+ +..+.++++++++ +|+|++++|...+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~~~~l~ell~~---aDiV~l~~Plt~~ 228 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADG-------FAVAESKDALFEQ---SDVLSVHLRLNDE 228 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTT-------CEECSSHHHHHHH---CSEEEECCCCSTT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcC-------ceEeCCHHHHHhh---CCEEEEeccCcHH
Confidence 358999999999999999999999999999998643 3333322 4556799999998 9999999998766
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
.+.++ .+.++.+++|.++||++++...+...+.+.|++..+......|...
T Consensus 229 t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~ 280 (352)
T 3gg9_A 229 TRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFET 280 (352)
T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSS
T ss_pred HHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCC
Confidence 77666 5677889999999999999999999999999887775544444433
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-12 Score=124.15 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=97.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......++++++++ +|+|++++|...++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH---------ETVAFTATADALAT---ANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS---------EEEEGGGCHHHHHH---CSEEEECCCCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh---------hccccCCHHHHHhh---CCEEEEcCCCchHH
Confidence 5799999999999999999999999999999976432211 11234578899988 99999999987777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~ 139 (474)
+.++ .+.+..+++|.++||+|++...+...+.+.|++..+......|+..++
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP 258 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP 258 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence 7766 567788999999999999999999999999988777655555655543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=120.63 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=93.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|+.|...|++|.+|||++++.. + +..+.++++++++ +|+|++++|....
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-------~~~~~~l~ell~~---aDvVil~vP~~~~ 228 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-------YTYYGSVVELASN---SDILVVACPLTPE 228 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-------SEEESCHHHHHHT---CSEEEECSCCCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-------ceecCCHHHHHhc---CCEEEEecCCChH
Confidence 35899999999999999999999999999999976431 1 3446789998887 9999999999767
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
++.++ .+.++.++++.+|||++++.+.++..+.+.+++.++......|.
T Consensus 229 t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~ 278 (333)
T 3ba1_A 229 TTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF 278 (333)
T ss_dssp GTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCC
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecC
Confidence 77777 45677889999999999999999999999998765544333333
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-11 Score=118.99 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=97.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+|||++...+... + ...+.++++++++ +|+|++++|...+.
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g-------~~~~~~l~ell~~---sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G-------AIYHDTLDSLLGA---SDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T-------CEECSSHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C-------CeEeCCHHHHHhh---CCEEEEecCCCHHH
Confidence 5899999999999999999999999999999875433221 2 3455689999988 99999999987777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~ 139 (474)
+.++ .+.++.+++|.++||++.+...+...+.+.|++..+......|+..++
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 7766 567788999999999999999999999999987665544445554443
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=121.26 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=76.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|+++...|++|.+|||++++. . ......+++++++. +|+|++++|...+
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----~-------~~~~~~sl~ell~~---aDvVil~vP~t~~ 235 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----V-------DWIAHQSPVDLARD---SDVLAVCVAASAA 235 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----S-------CCEECSSHHHHHHT---CSEEEECC-----
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----c-------CceecCCHHHHHhc---CCEEEEeCCCCHH
Confidence 3689999999999999999999999999999997641 1 13456789999998 9999999998778
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
++.++ .+.++.++++.++||++.+...+...+.+.+++..+......|+..+
T Consensus 236 t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 236 TQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp -----CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 88888 67788899999999999999999999999888766655444555443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.2e-11 Score=115.90 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=90.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|...+.
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVN-------GKF-VDLETLLKE---SDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcC-------ccc-cCHHHHHhh---CCEEEEecCCChHH
Confidence 58999999999999999999999999999999876 3333322 333 378899888 99999999987666
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.++.+++|.++||++++.+.+...+.+.+++..+.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 6666 4667789999999999999888888888888876554
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.1e-11 Score=121.21 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=101.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC------CCcEEEEeCChHH-HHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSK-VDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dv 76 (474)
++|||||+|.||.++|++|.+. |++|++.+++.++ .+...+.+ +.. +.+++|+++. +|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G-------~~v~d~ta~s~aEAa~~---ADV 124 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG-------FTEESGTLGDIWETVSG---SDL 124 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT-------CCTTTTCEEEHHHHHHH---CSE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC-------CEEecCCCCCHHHHHhc---CCE
Confidence 6899999999999999999999 9999987776443 33333333 333 3688999998 999
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHH--HHHHcCCeEEe-cCCCCCcc-------c---ccC
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK--AMAELGLLYLG-MGVSGGEE-------G---ARH 143 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~v~-~pvsgg~~-------~---a~~ 143 (474)
||++||+. ....++.++.+.+++|++|+.+... ....+.+ .....++.++. +|-..+.. + ...
T Consensus 125 VILaVP~~-~~~eVl~eI~p~LK~GaILs~AaGf---~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~ 200 (525)
T 3fr7_A 125 VLLLISDA-AQADNYEKIFSHMKPNSILGLSHGF---LLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGA 200 (525)
T ss_dssp EEECSCHH-HHHHHHHHHHHHSCTTCEEEESSSH---HHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTC
T ss_pred EEECCChH-HHHHHHHHHHHhcCCCCeEEEeCCC---CHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccC
Confidence 99999986 4567888999999999997665553 2212221 01123555554 56544432 1 014
Q ss_pred CC-ccc-cCC--CHHHHHHHHHHHHHHhcc
Q 011931 144 GP-SLM-PGG--SFEAYKYIEDILLKVAAQ 169 (474)
Q Consensus 144 G~-~i~-~gg--~~~~~~~v~~ll~~lg~~ 169 (474)
|. +++ +.. +.++.+.+..++..+|..
T Consensus 201 Gv~~liAv~qd~tgea~e~alala~aiG~~ 230 (525)
T 3fr7_A 201 GINSSFAVHQDVDGRATDVALGWSVALGSP 230 (525)
T ss_dssp SCCEEEEEEECSSSCHHHHHHHHHHHTTCS
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHCCCC
Confidence 55 233 333 457889999999999973
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=121.43 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=93.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|++|...|++|.+||+++++.. ....+ +..+.+++++++. +|+|++++|...+
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g-------~~~~~~l~ell~~---aDvV~l~~P~t~~ 236 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALG-------LQRVSTLQDLLFH---SDCVTLHCGLNEH 236 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcC-------CeecCCHHHHHhc---CCEEEEcCCCCHH
Confidence 36899999999999999999999999999999865421 12212 3445689999988 9999999998767
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
++.++ .+.++.+++|.++||++++.+.+...+.+.+++.++...
T Consensus 237 t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA 281 (347)
T 1mx3_A 237 NHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGA 281 (347)
T ss_dssp CTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEE
T ss_pred HHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEE
Confidence 77777 667788999999999999999999999999988766543
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=121.46 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=98.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +. ..+++++++. +|+|++++|....
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~ 213 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG-------LR-QVACSELFAS---SDFILLALPLNAD 213 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT-------EE-ECCHHHHHHH---CSEEEECCCCSTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC-------ce-eCCHHHHHhh---CCEEEEcCCCCHH
Confidence 36899999999999999999999999999999974444433332 33 3489999988 9999999998766
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
...++ .+.++.+++|.+|||++++.+.+...+.+.+++.++......|+..+
T Consensus 214 t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 214 TLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 66666 57788899999999999999999999999998877765555555443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-11 Score=118.92 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=90.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-++|||||+|.||+.+|++|...|++|.+||+ ++++. ...+.+ +....+++++++. +|+|++++|...
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g-------~~~~~~l~ell~~---aDvVil~~p~~~ 214 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTP 214 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcC-------cEEcCCHHHHHhh---CCEEEEeccCch
Confidence 35799999999999999999999999999999 87653 222222 3445589999988 999999999876
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+++.++ ...++.+++|.++||++++.+.+...+.+.+++.++.
T Consensus 215 ~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~ 258 (320)
T 1gdh_A 215 ETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 258 (320)
T ss_dssp TTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred HHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 677666 4577889999999999999888888888888776544
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-11 Score=119.74 Aligned_cols=120 Identities=12% Similarity=0.059 Sum_probs=95.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +..+.+++++++. +|+|++++|...+
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G-------~~~~~~l~ell~~---aDvV~l~~Plt~~ 260 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPV---CDVVTLNCPLHPE 260 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGG---CSEEEECSCCCTT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC-------ceecCCHHHHHhc---CCEEEEecCCchH
Confidence 35899999999999999999999999999999875544333322 3444688999888 9999999998767
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
++.++ .+.++.+++|.++||++++...+...+.+.+++..+.....-|+.
T Consensus 261 t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~ 311 (393)
T 2nac_A 261 TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF 311 (393)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred HHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecC
Confidence 77777 567788999999999999988888889988876554433333433
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=119.86 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=93.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|+.|...|++|++|||++++ +...+.+ +.. .+++++++. +|+|++++|....
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~e~l~~---aDiVil~vp~~~~ 213 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK-------ARY-MDIDELLEK---SDIVILALPLTRD 213 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------cee-cCHHHHHhh---CCEEEEcCCCChH
Confidence 468999999999999999999999999999999876 3333222 333 378888888 9999999999867
Q ss_pred HHHHHH-HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 87 VDETIK-TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
++.++. ++.+.++++ ++||+|++.+.+...+.+.+++..+......+++.
T Consensus 214 t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 264 (333)
T 2d0i_A 214 TYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 (333)
T ss_dssp TTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSS
T ss_pred HHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCC
Confidence 777763 567788999 99999999988888888888765554444455543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-12 Score=124.20 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=94.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|++|||+++..+.+. ......+++++++. +|+|++++|...++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD---------QVYQLPALNKMLAQ---ADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS---------EEECGGGHHHHHHT---CSEEEECCCCCSSS
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh---------cccccCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 5899999999999999999999999999999874322110 12235688999888 99999999987666
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.+..+++|.++||++.+.+.+...+.+.+++..+......|+..+
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSS
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCC
Confidence 6666 45677899999999999999999999999998776654444454443
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=119.21 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=93.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+++...|++|.+|||+++.. .+. .. ...+++++++. +|+|++++|.....
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~-------~~-~~~~l~ell~~---aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEP-------FL-TYTDFDTVLKE---ADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTT-------TC-EECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhc-------cc-cccCHHHHHhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999997641 111 12 23489999998 99999999987666
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.++.+++|.++||++.+...+...+.+.|++..+......|+..+
T Consensus 215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 266 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGE 266 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTG
T ss_pred HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccC
Confidence 6666 56778899999999999999999999999998876644444444443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-12 Score=121.98 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=108.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+ ..+++++++++ ..+|+|++|+|+. .
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~--------------~~~~~~~~l~~--~~~DvVv~~~~~~-~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE--------------KMVRGIDEFLQ--REMDVAVEAASQQ-A 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT--------------TEESSHHHHTT--SCCSEEEECSCHH-H
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh--------------hhcCCHHHHhc--CCCCEEEECCCHH-H
Confidence 58999999999999999999999997 6999985 221 13568888873 2399999999986 3
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhH---HHHHHHHHHcCCe-EEecCCCCCcccccCCCccccCCCHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENT---ERREKAMAELGLL-YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~---~~~~~~l~~~g~~-~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~l 162 (474)
..+++ ...++.|..|++.++..+... +++.+..+++|.. +++.|++|+...+..+.. +++...+...++.
T Consensus 63 ~~~~~---~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 63 VKDYA---EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNW 136 (236)
T ss_dssp HHHHH---HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEG
T ss_pred HHHHH---HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcCh
Confidence 33333 344668999999988764433 5666777777876 789999998766554432 4333333333333
Q ss_pred HHHHhccCCCCCCceEEeCCchhH-HHHHHHHHHHH
Q 011931 163 LLKVAAQVPDSGPCVTYVSKGGSG-NFVKMIHNGIE 197 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g~~g~g-~~~K~v~N~~~ 197 (474)
++..+ +.+++.|+.+.+ ..+|...|.+.
T Consensus 137 ~~~~~-------~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 137 RQFGR-------KGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp GGTTS-------CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred HHcCc-------ceEEEeccHHHHHHHCCchHHHHH
Confidence 33222 446888875433 45666666654
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=118.67 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=93.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|++|...|++|.+|||++++. ...+.+ +.. .+++++++. +|+|++++|...+
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~~-~~l~ell~~---aDvVvl~~P~~~~ 209 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKIN-------AKA-VSLEELLKN---SDVISLHVTVSKD 209 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcC-------cee-cCHHHHHhh---CCEEEEeccCChH
Confidence 3589999999999999999999999999999998764 222222 333 488899888 9999999998766
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
++.++ ++.++.+++|.++||++++.+.+...+.+.+++.++.-...-|...
T Consensus 210 t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 261 (313)
T 2ekl_A 210 AKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261 (313)
T ss_dssp SCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSS
T ss_pred HHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCC
Confidence 66666 5567789999999999999988888888888776553333334433
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=115.94 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=93.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+++...|++|.+||+++.. +...+.+ +. ..+++++++. +|+|++++|...+.
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENG-------VE-PASLEDVLTK---SDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHHHS---CSEEEECSCSSCC-
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcC-------ee-eCCHHHHHhc---CCEEEEcCcCCHHH
Confidence 57999999999999999999999999999998633 3333322 33 4589999998 99999999988788
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
+.++ .+.++.+++|.++||++.+...+...+.+.+++..+. ....|...
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~ 294 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPE 294 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSS
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCC
Confidence 8777 6778889999999999999999999999999876665 34445443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-11 Score=117.71 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=90.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|.+||+++++. ...+.+ +. ..+++++++. +|+|++++|...++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSASFG-------VQ-QLPLEEIWPL---CDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHHHTT-------CE-ECCHHHHGGG---CSEEEECCCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhhhcC-------ce-eCCHHHHHhc---CCEEEEecCCCHHH
Confidence 579999999999999999999999999999987652 222222 33 2488898888 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.++.+++|.++||++++.+.+...+.+.+++..+.
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 7777 5678889999999999999988988899888876554
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=123.43 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=109.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+++|++|...|++|++||+++.. +...+.+ +..+ +++++++. ||+|++++|....
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g-------~~~~-~l~e~~~~---aDvV~l~~P~~~~ 209 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLG-------IELL-SLDDLLAR---ADFISVHLPKTPE 209 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHT-------CEEC-CHHHHHHH---CSEEEECCCCSTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-------cEEc-CHHHHHhc---CCEEEECCCCchH
Confidence 368999999999999999999999999999998743 3333322 3333 78899988 9999999999867
Q ss_pred HHHHHHH-HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCccc----ccCCC-ccc---cC-CCHHHH
Q 011931 87 VDETIKT-LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEG----ARHGP-SLM---PG-GSFEAY 156 (474)
Q Consensus 87 v~~vl~~-l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~----a~~G~-~i~---~g-g~~~~~ 156 (474)
+..++.+ +++.+++|.+|||++++.+.+...+.+.+.+..+......+.++++. ....+ .++ .+ .+.++.
T Consensus 210 t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~ 289 (529)
T 1ygy_A 210 TAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 289 (529)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHH
T ss_pred HHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHH
Confidence 7777754 77889999999999999998888888888765444333334444332 22334 332 24 367766
Q ss_pred HH-----HHHHHHHHhcc
Q 011931 157 KY-----IEDILLKVAAQ 169 (474)
Q Consensus 157 ~~-----v~~ll~~lg~~ 169 (474)
++ ++.+.+.++..
T Consensus 290 ~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 290 DRAGTDVAESVRLALAGE 307 (529)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 65 56666666653
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.9e-12 Score=122.67 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=95.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......+++++++. +|+|++++|...+
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDiV~l~~Plt~~ 206 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---------SYVGREELRAFLNQ---TRVLINLLPNTAQ 206 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE---------EEESHHHHHHHHHT---CSEEEECCCCCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh---------hhcccCCHHHHHhh---CCEEEEecCCchh
Confidence 36899999999999999999999999999999976432110 01123578888887 9999999998877
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
.+.++ .+.++.+++|.++||++.+...+...+.+.|++..+......|...+
T Consensus 207 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 207 TVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp GTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 77777 67788899999999999999999999999998776654444455443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.7e-11 Score=119.64 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=96.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-++|||||+|.||+.+|++|...|++ |.+|||++.+.+...+.+ +....+++++++. +|+|++++|...
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~P~t~ 233 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG-------ARRVENIEELVAQ---ADIVTVNAPLHA 233 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT-------EEECSSHHHHHHT---CSEEEECCCCST
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC-------cEecCCHHHHHhc---CCEEEECCCCCh
Confidence 35899999999999999999999997 999999876555443322 3445689999887 999999999987
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
..+.++ .+.++.+++|.+|||++++...+...+.+.+++.++.-...-|+
T Consensus 234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf 284 (364)
T 2j6i_A 234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVW 284 (364)
T ss_dssp TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecC
Confidence 777777 56778899999999999999889999999998776543333343
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.7e-11 Score=116.70 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=92.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|++|...|++|.+|||+++ +. + .....+++++++. +|+|++++|....
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~-------~~~~~~l~ell~~---aDvV~l~~P~~~~ 187 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----P-------WRFTNSLEEALRE---ARAAVCALPLNKH 187 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----S-------SCCBSCSHHHHTT---CSEEEECCCCSTT
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----C-------cccCCCHHHHHhh---CCEEEEeCcCchH
Confidence 36899999999999999999999999999999876 11 1 2345688898887 9999999999877
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvs 135 (474)
++.++ .+.++.+++|.++||+|++.+.+...+.+.+++..+......|+
T Consensus 188 t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 188 TRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 77777 46788899999999999998888888988888765544333343
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.7e-11 Score=117.78 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=95.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~- 86 (474)
++|||||+|.||+.+|++|...|++|.+||++++... . .....+++++++. ||+|++++|...+
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~-------~~~~~sl~ell~~---aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----D-------EGDFRTLDELVQE---ADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----C-------CSCBCCHHHHHHH---CSEEEECCCCCCSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----c-------CcccCCHHHHHhh---CCEEEEcCcCCccc
Confidence 5799999999999999999999999999998543211 1 1245689999998 9999999997766
Q ss_pred ---HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcc
Q 011931 87 ---VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEE 139 (474)
Q Consensus 87 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~ 139 (474)
...++ .+.+..+++|.++||+|.+.+.+...+.+.+++.++......|+..++
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 56566 567778999999999999999999999999988777766666665543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=114.00 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=94.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+++...|++|.+||+++++. + +.. +....+++++++. +|+|++++|...+.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~~~~~l~ell~~---aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-------CeecCCHHHHHhh---CCEEEEcCCCcHHH
Confidence 579999999999999999999999999999998754 2 222 2334588999988 99999999988777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
+.++ ...++.+++|.++|+++++.+.+...+.+.+++.++.....-|+-.
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~ 264 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred HHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCC
Confidence 7666 4567789999999999999999999999999887665444444443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=113.10 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=87.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|++|...|++|.+|||++++.. . ...+++++++. +|+|++++|....
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~---------~~~~l~ell~~---aDvV~l~~p~~~~ 206 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----Y---------PFLSLEELLKE---ADVVSLHTPLTPE 206 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----S---------CBCCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----c---------ccCCHHHHHhh---CCEEEEeCCCChH
Confidence 35799999999999999999999999999999976532 1 13578899888 9999999999866
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
...++ .+.++.+++|.++||++++.+.+...+.+.++ ..+.
T Consensus 207 t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ 248 (311)
T 2cuk_A 207 THRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLF 248 (311)
T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSS
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCC
Confidence 77666 35677899999999999998888888888887 5553
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=118.87 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=91.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+++...|++|.+||+++... .. ......+++++++. ||+|++++|...+.
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~-----~~------~~~~~~sl~ell~~---aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----YG------NVKPAASLDELLKT---SDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC-----BT------TBEECSSHHHHHHH---CSEEEECCCC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc-----cc------CcEecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999975321 00 13456789999998 99999999988777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.+..+++|.++||+|.+.+.+...+.+.+++..+......|+..+
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 7766 56778899999999999999999999999998765554444454443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=117.31 Aligned_cols=106 Identities=14% Similarity=0.223 Sum_probs=89.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+++...|++|.+|||++... .+ ++....+++++++. ||+|++++|...++
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG------NATQVQHLSDLLNM---SDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC------CceecCCHHHHHhc---CCEEEEccCCChHH
Confidence 579999999999999999999999999999986431 11 13456689999998 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++..+
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i 252 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL 252 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCc
Confidence 7777 567788999999999999999999999998876544
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-10 Score=114.07 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=92.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.||+.+|++|...|++|.+||++++.. ..+ . ...+++++++. ||+|++++|...+
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g-------~-~~~~l~ell~~---aDvV~l~~Plt~~ 180 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPD-------G-EFVSLERLLAE---ADVISLHTPLNRD 180 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STT-------S-CCCCHHHHHHH---CSEEEECCCCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccC-------c-ccCCHHHHHHh---CCEEEEeccCccc
Confidence 3589999999999999999999999999999876432 111 1 24689999988 9999999998765
Q ss_pred ----HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 87 ----VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 87 ----v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
...++ .+.++.+++|.++||+|++.+.+...+.+.+++.++.....-|...
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~ 236 (380)
T 2o4c_A 181 GEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEG 236 (380)
T ss_dssp SSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTT
T ss_pred cccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeecc
Confidence 66666 5677889999999999999988999999999876655444444443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-10 Score=112.41 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=93.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|+++...|++|++|||++++. + +.. +. ..+++++++. +|+|++++|...+.
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-------FD-YVSLEDLFKQ---SDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-------CE-ECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-------cc-cCCHHHHHhc---CCEEEEcCCCchhH
Confidence 579999999999999999999999999999987643 1 111 12 3488999988 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg 137 (474)
+.++ .+.++.+++|.++|++|++.+.+...+.+.+++.++.-...-|.-.
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~ 262 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 262 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCC
Confidence 7766 5677889999999999999999999999999876554444445443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=112.44 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=94.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.||+.+|++|...|++|++|||++++. + +.. + ...+++++++. +|+|++++|.....
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~-~~~~l~ell~~---aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY-------C-TQVSLDEVLEK---SDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT-------C-EECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc-------c-ccCCHHHHHhh---CCEEEEecCCchHH
Confidence 579999999999999999999999999999987643 1 111 1 23488899888 99999999987666
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++.++.....-|.-.+
T Consensus 213 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 264 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE 264 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCC
Confidence 6666 56778899999999999999999999999998876654444454443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.4e-10 Score=95.97 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=83.5
Q ss_pred cCcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ . +...+.|++|+.+. +|++++++|
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~-------G~~~~~s~~el~~~---vDlvii~vp 78 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----E-------GLKCYRSVRELPKD---VDVIVFVVP 78 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----T-------TEECBSSGGGSCTT---CCEEEECSC
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----C-------CeeecCCHHHhCCC---CCEEEEEeC
Confidence 357999999 9999999999999999876666654222 1 36778899998877 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+ +.+.++++++.+ ...+.++++.++. .+++.+.+++.|+++++.
T Consensus 79 ~-~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 79 P-KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp H-HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECS
T ss_pred H-HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcC
Confidence 6 688888888776 4556788888774 456777778889999973
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=104.85 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=82.7
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh--
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP-- 86 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~-- 86 (474)
+|+|||+|.||.+++..|.+.|++|++|||++++.+++.+... .. ..+++++ .. +|+||+|+|.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~------~~-~~~~~~~-~~---~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG------LR-AVPLEKA-RE---ARLLVNATRVGLEDP 186 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT------CE-ECCGGGG-GG---CSEEEECSSTTTTCT
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cc-hhhHhhc-cC---CCEEEEccCCCCCCC
Confidence 7999999999999999999999999999999998888876542 22 4567777 66 9999999998731
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+..++. .+.+++|.+|+|++.. |..+ ++.+.++++|+.+++
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEEC
Confidence 112221 3567889999999987 4444 466667777877664
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-08 Score=88.00 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=78.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~-~l~~~dvIil~vp~ 83 (474)
..|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+..... -+.. ..+.+.+.+ .++++|+||+++|+
T Consensus 3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGK 79 (140)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE---EEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence 457999999999999999999999999999999999888776531100 0111 123333321 24569999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
+ .....+..+.+.+.++.+|+..++.. . .+.++..|+.++-.|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 80 E-EVNLMSSLLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP 122 (140)
T ss_dssp H-HHHHHHHHHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred c-hHHHHHHHHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence 5 44444555566677778877655432 2 234556787766655
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=106.25 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=94.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|+|||+|.||+.+|+.|...|++|++|||++++.+.+.+.+. ......+++++++. +|+|++++|...
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~- 227 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL-----VPFHTDELKEHVKD---IDICINTIPSMI- 227 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----EEEEGGGHHHHSTT---CSEEEECCSSCC-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----eEEchhhHHHHhhC---CCEEEECCChhh-
Confidence 358999999999999999999999999999999987766554321 11112466777666 999999999852
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC-CCCCcccccCCCccccCCCHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG-VSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p-vsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (474)
+. +.....++++.++||++....... + +.....|+.++++| +.+....+..+ ....+.+.+++..
T Consensus 228 i~---~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~--------~l~~~~~~~~l~~ 293 (300)
T 2rir_A 228 LN---QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAG--------QILANVLSKLLAE 293 (300)
T ss_dssp BC---HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHH--------HHHHHHHHHHHHH
T ss_pred hC---HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHH--------HHHHHHHHHHHHH
Confidence 21 234567889999999998644332 2 34456789988887 44433222221 1223556666666
Q ss_pred Hhc
Q 011931 166 VAA 168 (474)
Q Consensus 166 lg~ 168 (474)
++.
T Consensus 294 ~~~ 296 (300)
T 2rir_A 294 IQA 296 (300)
T ss_dssp HHH
T ss_pred hcc
Confidence 653
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-10 Score=106.71 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=81.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|+|||+|.||.+++..|.+.|++|++|||++++.+++.+.. ++...++++++++. +|+||.|+|.+..
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---aDiVi~atp~~~~ 199 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF------PLEVVNSPEEVIDK---VQVIVNTTSVGLK 199 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS------CEEECSCGGGTGGG---CSEEEECSSTTSS
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc------CCeeehhHHhhhcC---CCEEEEeCCCCCC
Confidence 36899999999999999999999999999999999888776432 23445577777776 9999999998742
Q ss_pred --HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 --VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 --v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+...+. .+.++++.+|+|+++ .. + .+.+..+++|+.+++
T Consensus 200 ~~~~~~i~--~~~l~~g~~viDv~~-~~--t-~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 200 DEDPEIFN--YDLIKKDHVVVDIIY-KE--T-KLLKKAKEKGAKLLD 240 (275)
T ss_dssp TTCCCSSC--GGGCCTTSEEEESSS-SC--C-HHHHHHHHTTCEEEC
T ss_pred CCCCCCCC--HHHcCCCCEEEEcCC-Ch--H-HHHHHHHHCcCEEEC
Confidence 111221 345788999999998 32 2 244455567777664
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-09 Score=94.58 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=81.7
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ . ++..+.|++|+.+. +|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~-------G~~~~~sl~el~~~---~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----L-------GQQGYATLADVPEK---VDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----T-------TEECCSSTTTCSSC---CSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----C-------CeeccCCHHHcCCC---CCEEEEEe
Confidence 47999999 8999999999999999977777664 221 1 35677888888776 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|+ ..+.++++++.+ ...+.++++.++. .+++.+.+++.|+++++
T Consensus 79 p~-~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 79 NS-EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp CS-THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred CH-HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 97 588889888776 4556788887654 45677778888999985
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.8e-09 Score=91.91 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=73.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|+|||+|.||..++..|.+.|++|++|||++++.+++.+.... .+....+..+++.. +|+||.|+|.+..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~----~~~~~~~~~~~~~~---~Divi~at~~~~~ 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY----EYVLINDIDSLIKN---NDVIITATSSKTP 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC----EEEECSCHHHHHHT---CSEEEECSCCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC----ceEeecCHHHHhcC---CCEEEEeCCCCCc
Confidence 3589999999999999999999999999999999999887765421 23456788888887 9999999998743
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+ +. ...+.+|.+++|.+..
T Consensus 94 ~---~~--~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 94 I---VE--ERSLMPGKLFIDLGNP 112 (144)
T ss_dssp S---BC--GGGCCTTCEEEECCSS
T ss_pred E---ee--HHHcCCCCEEEEccCC
Confidence 2 11 2457789999998763
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=97.92 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=71.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---CCCCccc-cCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---GDLPLFG-FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---~~~~~~~-~~s~~e~~~~l~~~dvIil~ 80 (474)
||||+|||+|.||.++|..|+++| ++|++||+++++++.+....... ....+.. ++++ +.++. +|+||++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~---aDvViia 76 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALAD---ADVVIST 76 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCC---CCEEEEe
Confidence 479999999999999999999999 79999999998887765432100 0001222 3455 44444 9999999
Q ss_pred cCCChh-------------------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAGAP-------------------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~~-------------------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|.+.. +++++..+.+.. ++.+|+..+|.
T Consensus 77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp 124 (309)
T 1hyh_A 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNP 124 (309)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSS
T ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCc
Confidence 998653 456667777654 56777777774
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-08 Score=97.70 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=80.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.+. ......+++++++. +|+|++++|...
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~- 225 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGM-----EPFHISKAAQELRD---VDVCINTIPALV- 225 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTS-----EEEEGGGHHHHTTT---CSEEEECCSSCC-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCC-----eecChhhHHHHhcC---CCEEEECCChHH-
Confidence 357999999999999999999999999999999987665543321 11112456666665 999999999752
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
+. .+.+..++++.++||++....... + +.....|+.++.+|
T Consensus 226 i~---~~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~ 266 (293)
T 3d4o_A 226 VT---ANVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVP 266 (293)
T ss_dssp BC---HHHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECC
T ss_pred hC---HHHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECC
Confidence 21 233456789999999997543332 2 34455688877665
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-09 Score=103.88 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=89.7
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+|+|||+|.||..++..|.. ...+|.+|||++++.+++.+......+..+..+.+++++++. +|+|++|+|
T Consensus 127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTp 203 (350)
T 1x7d_A 127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTA 203 (350)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCC
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEecc
Confidence 345689999999999999998864 346899999999999999876421000014567789999887 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
... ...++. .+.+++|.+|++.++..|. .+++...+..++..|+|..
T Consensus 204 s~~-~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~~ 250 (350)
T 1x7d_A 204 DKA-YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEYE 250 (350)
T ss_dssp CSS-EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESSH
T ss_pred CCC-CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECCH
Confidence 862 122221 2467899999999998776 4555555656677888863
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.8e-08 Score=86.27 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=76.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhh--cCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNS--IQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~--l~~~dvIil~vp 82 (474)
.++|.|+|+|.||..++..|.+. |++|+++|+++++.+.+.+.+... +... ++.+.+.+. ++++|+||+++|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~----~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNV----ISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCE----EECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCE----EEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 35899999999999999999999 999999999999988877644210 1111 233323222 456999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
++.....++..+ ..+.+...|+..++. +.. .+.+.+.|+.++..|
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~ii~~~~~-~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 115 HHQGNQTALEQL-QRRNYKGQIAAIAEY-PDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp SHHHHHHHHHHH-HHTTCCSEEEEEESS-HHH----HHHHHHHTCSEEEEH
T ss_pred ChHHHHHHHHHH-HHHCCCCEEEEEECC-HHH----HHHHHHcCCCEEEch
Confidence 865544444433 334444444444332 222 234556688777665
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.72 E-value=9e-08 Score=95.00 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=83.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+|+||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++. +++++++++. ..+|+|++|+|+
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~~~~l~~-~~~D~V~i~tp~ 73 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTIDAIEAA-ADIDAVVICTPT 73 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCHHHHHHC-TTCCEEEECSCG
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCHHHHhcC-CCCCEEEEeCCc
Confidence 356999999999999999999985 77876 7999999988887754 255 8899999872 238999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+.+.. . +..|. ++++.- +..+...+++.+..++.|+.+.
T Consensus 74 ~~h~~~~~~-a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (331)
T 4hkt_A 74 DTHADLIER-F---ARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM 118 (331)
T ss_dssp GGHHHHHHH-H---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHH-H---HHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 765544433 2 33454 445433 4556777778887777776554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=78.62 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=73.0
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.++++|.|+|+|.||..++..|.+.| ++|+++||++++.+.+...+... -..-..+.+++.+.++.+|+||.++|.
T Consensus 3 ~~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~d~vi~~~~~ 79 (118)
T 3ic5_A 3 AMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVAT---KQVDAKDEAGLAKALGGFDAVISAAPF 79 (118)
T ss_dssp TTCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEE---EECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcE---EEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 34568999999999999999999999 99999999999888776322110 000122334444444559999999986
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREK 120 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~ 120 (474)
. ....++... ...|..++|.++.. ..++.+.+
T Consensus 80 ~-~~~~~~~~~---~~~g~~~~~~~~~~-~~~~~~~~ 111 (118)
T 3ic5_A 80 F-LTPIIAKAA---KAAGAHYFDLTEDV-AATNAVRA 111 (118)
T ss_dssp G-GHHHHHHHH---HHTTCEEECCCSCH-HHHHHHHH
T ss_pred h-hhHHHHHHH---HHhCCCEEEecCcH-HHHHHHHH
Confidence 5 344444433 34678888887654 34444443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=81.15 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=74.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~ 83 (474)
+|++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.+... +....+..+.... ++++|+||+++|+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~----~~gd~~~~~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDA----VIADPTDESFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcE----EECCCCCHHHHHhCCcccCCEEEEecCC
Confidence 456899999999999999999999999999999999998887654210 1111222233332 3469999999996
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
. .....+...+..+....+|+-..+.. . .+.+...|+..+-.|
T Consensus 81 ~-~~n~~~~~~a~~~~~~~iia~~~~~~--~----~~~l~~~G~~~vi~p 123 (141)
T 3llv_A 81 D-EFNLKILKALRSVSDVYAIVRVSSPK--K----KEEFEEAGANLVVLV 123 (141)
T ss_dssp H-HHHHHHHHHHHHHCCCCEEEEESCGG--G----HHHHHHTTCSEEEEH
T ss_pred H-HHHHHHHHHHHHhCCceEEEEEcChh--H----HHHHHHcCCCEEECH
Confidence 5 33333333444444556666554432 2 233455677654443
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=93.37 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=82.3
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHH-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAE-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||.. ++..|.+ .++++. ++|+++++.+++.+... +..+++++++++. +|+|++|+|
T Consensus 5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~------~~~~~~~~~ll~~---~D~V~i~tp 75 (308)
T 3uuw_A 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR------IMPFDSIESLAKK---CDCIFLHSS 75 (308)
T ss_dssp CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT------CCBCSCHHHHHTT---CSEEEECCC
T ss_pred ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHHhc---CCEEEEeCC
Confidence 3578999999999996 8888877 467776 89999999998877642 3458899999886 999999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEe-cCCCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIID-GGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+.+.. .+..|. ++++ -.+..+...+++.+..++.|+.+.
T Consensus 76 ~~~h~~~~~~----al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 76 TETHYEIIKI----LLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp GGGHHHHHHH----HHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHhHHHHHHH----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9855444332 234555 4444 344556677778777777776543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=81.62 Aligned_cols=117 Identities=19% Similarity=0.248 Sum_probs=75.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
+.+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+.+... +....+..+.... ++++|+||+++|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA----VLGNAANEEIMQLAHLECAKWLILTIPNG 82 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE----EECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence 45799999999999999999999999999999999998887654210 1112222333322 34599999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.....++.. +..+.++..+|-..+.. ...+.+.+.|+..+-.|
T Consensus 83 ~~n~~~~~~-a~~~~~~~~iiar~~~~-----~~~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 83 YEAGEIVAS-ARAKNPDIEIIARAHYD-----DEVAYITERGANQVVMG 125 (140)
T ss_dssp HHHHHHHHH-HHHHCSSSEEEEEESSH-----HHHHHHHHTTCSEEEEH
T ss_pred HHHHHHHHH-HHHHCCCCeEEEEECCH-----HHHHHHHHCCCCEEECc
Confidence 443333333 33344444444433321 23345566777655444
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=94.48 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=83.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++..+++++++++. ..+|+|++|+|
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 84 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT------GARGHASLTDMLAQ-TDADIVILTTP 84 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH------CCEEESCHHHHHHH-CCCSEEEECSC
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEECCC
Confidence 456899999999999999999987 67765 8999999998887754 25678899999873 23899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEE-ecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGDCII-DGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiI-d~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+.+.. .+..|..|+ +-- +..+...+++.+..++.|+.+.
T Consensus 85 ~~~h~~~~~~----al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 85 SGLHPTQSIE----CSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp GGGHHHHHHH----HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHH----HHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 9755443332 234555444 322 3445667777777777776553
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=92.94 Aligned_cols=115 Identities=10% Similarity=0.158 Sum_probs=84.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+... + ..+++++++++. ..+|+|++|+|
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 76 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA------IPVAYGSYEELCKD-ETIDIIYIPTY 76 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT------CCCCBSSHHHHHHC-TTCSEEEECCC
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC------CCceeCCHHHHhcC-CCCCEEEEcCC
Confidence 356899999999999999999985 67776 88999999988877642 3 467899999872 23899999999
Q ss_pred CChhHHHHHHHHHhcccCC-CEEEecC-CCCchhHHHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKG-DCIIDGG-NEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+....+.+... +..| .++++.- +..+...+++.+..++.|+.+..
T Consensus 77 ~~~h~~~~~~a----l~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v 123 (330)
T 3e9m_A 77 NQGHYSAAKLA----LSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLME 123 (330)
T ss_dssp GGGHHHHHHHH----HHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 98655444332 3344 4666544 45556777777777777765543
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=94.32 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=82.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. +...+++++++++. ..+|+|++|+|+.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~~ 76 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN------GAEAVASPDEVFAR-DDIDGIVIGSPTS 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT------TCEEESSHHHHTTC-SCCCEEEECSCGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEEeCCch
Confidence 46899999999999999999986 67766 8999999988887653 25678899999872 2389999999997
Q ss_pred hhHHHHHHHHHhcccCC-CEEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
...+.+.. . +..| .++++.. +..+...+++.+..++.|+.+.
T Consensus 77 ~h~~~~~~-a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (344)
T 3euw_A 77 THVDLITR-A---VERGIPALCEKPIDLDIEMVRACKEKIGDGASKVM 120 (344)
T ss_dssp GHHHHHHH-H---HHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEE
T ss_pred hhHHHHHH-H---HHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 65544433 2 3334 4666543 4455667777777766665443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.1e-08 Score=94.88 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=70.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
.+||+|||+|.||.++|..|+.+|+ +|++||+++++++........ . ...++..+++. +.++. +|+||++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVVIIT 79 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 3689999999999999999999999 999999998877653211000 0 00134444566 44555 9999999
Q ss_pred cCCC---------------hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+ ..+++++..+.+.. ++.+++..||..
T Consensus 80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 9432 12456667777764 688999988854
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=93.55 Aligned_cols=114 Identities=12% Similarity=0.199 Sum_probs=83.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|+||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.... ...+++++++++. ..+|+|++|+|+.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV-----EKAYKDPHELIED-PNVDAVLVCSSTN 75 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC-----CceeCCHHHHhcC-CCCCEEEEcCCCc
Confidence 56999999999999999999875 66766 889999999888775421 2468899999882 2389999999997
Q ss_pred hhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 85 APVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
...+.+.. .+..|. ++++.- +..+...+++.+..++.|+.+.
T Consensus 76 ~h~~~~~~----al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 76 THSELVIA----CAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp GHHHHHHH----HHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred chHHHHHH----HHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 55444332 233455 555543 4556677778877777776543
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.2e-08 Score=96.28 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=93.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+.+... ..+.+ ....++++++++ ||+|++.+|-....
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~--------~~~~~l~ell~~---sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKG--------CVYTSLDELLKE---SDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTT--------CEECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcC--------ceecCHHHHHhh---CCEEEEcCCCChhh
Confidence 579999999999999999999999999999876432 22221 235689999998 99999999988777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|++..+.....-|.-.+
T Consensus 209 ~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~E 260 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTH
T ss_pred ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCC
Confidence 7777 56677899999999999999889999999887655544444454443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-07 Score=93.25 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=68.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----CCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|||+|||+|.||.++|..|+.+|+ +|++||+++++++.+....... ...++.. ++. +.++. +|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~~~~---aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-ADLKG---SDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GGGTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HHhCC---CCEEEEcc
Confidence 589999999999999999999999 9999999998877655321100 0001222 243 33444 99999999
Q ss_pred CCChh---------------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAP---------------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~---------------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.+.. +++++..+.+.. ++.+||..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 97541 355666676654 677777777743
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=93.13 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=83.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+... +..+++++++++. ..+|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 77 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN------CAGDATMEALLAR-EDVEMVIITVPND 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT------CCCCSSHHHHHHC-SSCCEEEECSCTT
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHhcC-CCCCEEEEeCChH
Confidence 35899999999999999999887 77865 88999999988876542 4568899999843 2389999999998
Q ss_pred hhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 85 APVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
...+.+.. .+..|. ++++.- +..+...+++.+..+++|+.+.
T Consensus 78 ~h~~~~~~----al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 78 KHAEVIEQ----CARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp SHHHHHHH----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHH----HHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 65554433 233455 555533 4455677777777777776543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-07 Score=91.98 Aligned_cols=104 Identities=11% Similarity=0.141 Sum_probs=73.6
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEE
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
..+.|||+|||+|.||.++|..|+.+|+ +|.+||+++++++........ . ...++..++++++.++. +|+|
T Consensus 6 ~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiV 82 (331)
T 1pzg_A 6 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCV 82 (331)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEE
Confidence 3445799999999999999999999998 999999999877663221100 0 01145556788877776 9999
Q ss_pred EEec--CCCh------------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 78 IMLV--KAGA------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 78 il~v--p~~~------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|+++ |... .++++...+.+.. +..+++..||..
T Consensus 83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~ 135 (331)
T 1pzg_A 83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 135 (331)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence 9999 4321 1455556666654 777888776643
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-07 Score=91.84 Aligned_cols=100 Identities=14% Similarity=0.244 Sum_probs=69.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+++||+|||+|.||.++|..|+.+|+ +|.+||+++++++........ . ...+++.+++. +.++. +|+||+
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~ 88 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVII 88 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEE
Confidence 34689999999999999999999999 999999999887753211100 0 01135555666 44555 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+++.+. .++++...+.+.. ++.+++..||.
T Consensus 89 avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 89 TAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred cCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 994332 1445556666655 77788777773
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.5e-08 Score=93.85 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=81.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.++|.|||+|.||.+++..|++.|+ +|+++||++++.+++.+....... .+....++.+.+.. +|+||.|+|.+.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~-~~~~~~~~~~~~~~---aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS-AYFSLAEAETRLAE---YDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC-CEECHHHHHHTGGG---CSEEEECSCTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC-ceeeHHHHHhhhcc---CCEEEECCCCCC
Confidence 3579999999999999999999998 999999999999888765421000 01111233344444 999999999764
Q ss_pred h--HHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 P--VDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~--v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+.+ +. ...++++.+++|++.. |..|. +.+..+++|..+++
T Consensus 217 ~~~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 217 HPRVEVQPLS--LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQN 261 (297)
T ss_dssp SSCCSCCSSC--CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred CCCCCCCCCC--HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEEC
Confidence 2 1100 11 2346789999999995 55553 66667778887664
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-08 Score=96.13 Aligned_cols=116 Identities=10% Similarity=0.109 Sum_probs=86.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
...+|+|||+|.||..++..|.+ ...+|.+|||++++.+++.+..... ...+. +.++++++ . +|+|++|+|.
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-~~~~~-~~~~~e~v-~---aDvVi~aTp~ 197 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-GISAS-VQPAEEAS-R---CDVLVTTTPS 197 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-TCCEE-ECCHHHHT-S---SSEEEECCCC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-CceEE-ECCHHHHh-C---CCEEEEeeCC
Confidence 45689999999999999999987 3468999999999999988764321 01245 77888888 7 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
... ++. .+.+++|.+|++.++..|. .+++...+..++..|+|.+
T Consensus 198 ~~p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 198 RKP---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp SSC---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred CCc---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 642 221 2467899999999887765 3344444445556788864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=83.42 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH-HhhhhcCCCCccc-cCCHHHHHhh-cCCCcEEEE
Q 011931 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKKEGDLPLFG-FRDPESFVNS-IQKPRVIIM 79 (474)
Q Consensus 3 ~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~~~~~~~~-~~s~~e~~~~-l~~~dvIil 79 (474)
+....++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+. ..+.. -+.. ..+.+.+.+. ++.+|+||+
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~----~~~~d~~~~~~l~~~~~~~ad~Vi~ 90 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF----TVVGDAAEFETLKECGMEKADMVFA 90 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE----EEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc----EEEecCCCHHHHHHcCcccCCEEEE
Confidence 344457899999999999999999999999999999998876654 22210 0111 1122222211 345999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+++++. ....+..+...+.+...++-..+.. ... +.+.+.|+.
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~iv~~~~~~-~~~----~~l~~~G~~ 133 (155)
T 2g1u_A 91 FTNDDS-TNFFISMNARYMFNVENVIARVYDP-EKI----KIFEENGIK 133 (155)
T ss_dssp CSSCHH-HHHHHHHHHHHTSCCSEEEEECSSG-GGH----HHHHTTTCE
T ss_pred EeCCcH-HHHHHHHHHHHHCCCCeEEEEECCH-HHH----HHHHHCCCc
Confidence 999864 3334444444434444444444432 222 234445665
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-07 Score=91.05 Aligned_cols=119 Identities=12% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHH-H-CCCcE-EEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIA-E-KGFPI-SVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~-~-~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dv 76 (474)
|....++++|||||+|.||..++..|. + .+++| .++|+++++.+.+.+.. ++ ..+++++++++. ..+|+
T Consensus 2 m~~~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~------g~~~~~~~~~~~l~~-~~~D~ 74 (346)
T 3cea_A 2 MVTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL------GVETTYTNYKDMIDT-ENIDA 74 (346)
T ss_dssp ---CCCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT------CCSEEESCHHHHHTT-SCCSE
T ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh------CCCcccCCHHHHhcC-CCCCE
Confidence 545556679999999999999999998 5 36775 58999999988877643 23 457889998863 23899
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCE-EEec-CCCCchhHHHHHHHHHHc-CCeEE
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDC-IIDG-GNEWYENTERREKAMAEL-GLLYL 130 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~i-iId~-st~~~~~~~~~~~~l~~~-g~~~v 130 (474)
|++|+|+....+.+.. .++.|.. +++. .+..+...+++.+..++. |+.+.
T Consensus 75 V~i~tp~~~h~~~~~~----al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~ 127 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIY----AMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ 127 (346)
T ss_dssp EEECSCGGGHHHHHHH----HHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred EEEeCChHhHHHHHHH----HHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 9999998755444332 3445664 4442 233445666666666666 66544
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-07 Score=90.41 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=83.2
Q ss_pred cCcEEEEcccHhHH-HHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||. .++..|.+. +++|. ++|+++++.+++.+.. ++..+++++++++. ...|+|++|+|+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~ 99 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGYPALLER-DDVDAVYVPLPA 99 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESHHHHHTC-TTCSEEEECCCG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEECCCc
Confidence 45899999999998 799999887 67775 8899999998887754 25566899999863 348999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+.+... +..|. ++++-- +....+.+++.+..++.|+.+.
T Consensus 100 ~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 100 VLHAEWIDRA----LRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp GGHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 8655544332 34555 555532 4455677788887777776554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.7e-07 Score=89.09 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=66.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhh-----cCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK-----EGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~-----~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+|.||.++|..|+.+ |++|++||+++++++........ ....++..++++++ ++. +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 79999999999887755321110 00002444566666 555 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+|.+. .++++.+.+.+.. ++.+|+..||
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 97642 1234445565554 6677777766
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.6e-07 Score=88.74 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=79.8
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||.. ++..|.+. +++|. ++|+++++.+++.+... +..+++.+++... +|+|++++|
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g------~~~~~~~~~l~~~---~D~V~i~tp 74 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR------IPYADSLSSLAAS---CDAVFVHSS 74 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT------CCBCSSHHHHHTT---CSEEEECSC
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCccCcHHHhhcC---CCEEEEeCC
Confidence 3468999999999997 88888764 67776 99999999888776542 3456778777444 999999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+.+.. .++.|. ++++. .+..+.+.+++.+..++.|+.+.
T Consensus 75 ~~~h~~~~~~----al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (319)
T 1tlt_A 75 TASHFDVVST----LLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLM 120 (319)
T ss_dssp TTHHHHHHHH----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred chhHHHHHHH----HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 8754443332 344566 56663 34456677777777777776554
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.7e-07 Score=90.34 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred cCcEEEEcccHhHHHHHHHHH-H-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-E-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+++++++++. .++|+|++|+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPNDDSLLAD-ENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEECCCc
Confidence 468999999999999999998 4 467766 889999999888775420 14578899999874 347999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
....+.+.. .++.|. ++++-- +......+++.+..++.|+.+
T Consensus 77 ~~h~~~~~~----al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 77 PAHESSVLK----AIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHH----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 765544432 344565 444433 445566777777777777644
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.6e-07 Score=88.30 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=65.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC--CCcccc-CCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD--LPLFGF-RDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~--~~~~~~-~s~~e~~~~l~~~dvIil~vp 82 (474)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++........... .+.... ++. +.++ .+|+||++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a~~---~aDvVIi~~~ 76 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-SELA---DAQVVILTAG 76 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-GGGT---TCSEEEECC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-HHhC---CCCEEEEcCC
Confidence 589999999999999999999999 999999999877654332211000 011121 233 3344 4999999996
Q ss_pred CCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+. .+++++..+.+. .++.+|+..||..
T Consensus 77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 77 ANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 543 134555666665 4778888777743
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-07 Score=88.98 Aligned_cols=112 Identities=10% Similarity=0.091 Sum_probs=76.7
Q ss_pred cCcEEEEcccHhHH-HHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~-~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||. .++..|.+. +++|.++|+++++.+++.+... +.. +.+..+++. ..+|+|++|+|+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g------~~~~~~~~~~~l~--~~~D~V~i~tp~ 73 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR------VSATCTDYRDVLQ--YGVDAVMIHAAT 73 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT------CCCCCSSTTGGGG--GCCSEEEECSCG
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC------CCccccCHHHHhh--cCCCEEEEECCc
Confidence 46899999999998 599988775 6788899999999988876542 222 334444442 239999999998
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+ ++.. .++.|. ++++. .+......+++.+..++.|+.+.
T Consensus 74 ~~h~~-~~~~---al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 118 (323)
T 1xea_A 74 DVHST-LAAF---FLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLY 118 (323)
T ss_dssp GGHHH-HHHH---HHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHH-HHHH---HHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEE
Confidence 75443 3322 234554 66663 34455667777777777776554
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=86.49 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=81.4
Q ss_pred CcEEEEcccHhHHHH-HHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNL-ALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
+||||||+|.||..+ +..|.+.+++|. ++|+++++.+++.+... + ..+++++++++. ..+|+|++++|+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g------~~~~~~~~~~~l~~-~~~D~V~i~tp~~ 73 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENG------IGKSVTSVEELVGD-PDVDAVYVSTTNE 73 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTT------CSCCBSCHHHHHTC-TTCCEEEECSCGG
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEeCChh
Confidence 489999999999998 888887788865 89999999888776532 3 357789998763 2389999999987
Q ss_pred hhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEec
Q 011931 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
...+.+ .. .++.|. ++++. .+..+...+++.+..++.|+.+..+
T Consensus 74 ~h~~~~-~~---al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~ 119 (332)
T 2glx_A 74 LHREQT-LA---AIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTN 119 (332)
T ss_dssp GHHHHH-HH---HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred HhHHHH-HH---HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 544333 22 344676 45543 3445566777777777777765543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.5e-07 Score=77.24 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=63.3
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~-~l~~~dvIil~vp~ 83 (474)
++++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+.+.. -+.. ..+.+.+.+ .++++|+||.+++.
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH----AVIANATEENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE----EEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE----EEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence 34579999999999999999999999999999999887665433210 0111 123332221 13459999999997
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+......+...+..+.+..+|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 81 NIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred chHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 63333333334444555545544443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.6e-07 Score=87.30 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=68.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ . ...+++.+++. +.++. +|+||++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVVIVT 79 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 4699999999999999999999998 999999999877643322110 0 01134555666 44555 9999999
Q ss_pred cCCCh--------------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAGA--------------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+. .++++...+.+.. ++.++|..||.
T Consensus 80 ~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 80 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 83321 2445556666655 77787777763
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.5e-07 Score=89.40 Aligned_cols=101 Identities=14% Similarity=0.231 Sum_probs=67.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHH--HH-Hhhhhc-CCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDE--TV-ERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~--l~-~~~~~~-~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++|||+|||+|.||..+|..|+.+|+ +|+++|+++++++. .. ..+... +..++...++. +.++. +|+||+
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~---aD~Vii 81 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRD---ADMVVI 81 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCC---CCEEEE
Confidence 45799999999999999999999999 99999999877652 21 121100 00012222243 33344 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+++.+. .+++++..+.+. .++.+|+..+|..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 996542 122566667664 6788898888854
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-07 Score=92.00 Aligned_cols=116 Identities=13% Similarity=0.179 Sum_probs=81.3
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.+......+..+..+ ++++++.. +|+|++|+|
T Consensus 119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~---aDIVi~aT~ 192 (313)
T 3hdj_A 119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQ---ADIVVTATR 192 (313)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHH---CSEEEECCC
T ss_pred CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhh---CCEEEEccC
Confidence 3456899999999999999999863 3589999999 55555543211001124456 99999988 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC-CeEEec
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG-LLYLGM 132 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g-~~~v~~ 132 (474)
.... ++. .+.+++|.+|++.++..|.. +++...+-.+. ..|+|.
T Consensus 193 s~~p---vl~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 193 STTP---LFA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp CSSC---SSC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred CCCc---ccC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 8642 232 35688999999999987754 44443333333 467874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=81.70 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=65.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHh-hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVN-SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~-~l~~~dvIil~vp~~~ 85 (474)
|||.|+|+|.+|..+|..|.+.|++|+++|+++++++++.+..... -+... ++.+.+-+ .++++|+||++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPRD- 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCCc-
Confidence 6899999999999999999999999999999999998876542100 01111 22222222 256699999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.....+..++..+.+...+|-..+
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEe
Confidence 444444444444434444444333
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-07 Score=94.63 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=77.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|||+|.||+.+|+.+...|.+|++||+++.+..+....+ +. ..+++++++. +|+|++++.+..-+
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 326 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVDVI 326 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSSSB
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC-------CE-ecCHHHHHhc---CCEEEECCChhhhc
Confidence 4799999999999999999999999999999988754433322 32 3578888877 99999997543222
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCc-hhHHHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWY-ENTERREK 120 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~ 120 (474)
. .+.+..+++|.+|||++.... .+...+.+
T Consensus 327 ~---~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 327 K---LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp C---HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred C---HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 1 356677999999999999987 47766665
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.4e-08 Score=94.10 Aligned_cols=112 Identities=17% Similarity=0.066 Sum_probs=76.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+++.|||+|.||++++..|++.|. +|+++||++++.+++.... ......++.+++.. +|+||.++|.+-
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~------~~~~~~~~~~~~~~---aDiVInaTp~Gm 187 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI------NKINLSHAESHLDE---FDIIINTTPAGM 187 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC------EEECHHHHHHTGGG---CSEEEECCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc------ccccHhhHHHHhcC---CCEEEECccCCC
Confidence 3579999999999999999999999 9999999998876655321 11122334444445 999999999752
Q ss_pred h--HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 P--VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~--v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+..+ -...++++.+|+|++..+ ..| .+.+..+++|...++
T Consensus 188 ~~~~~~~l--~~~~l~~~~~V~D~vY~P-~~T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 188 NGNTDSVI--SLNRLASHTLVSDIVYNP-YKT-PILIEAEQRGNPIYN 231 (277)
T ss_dssp ----CCSS--CCTTCCSSCEEEESCCSS-SSC-HHHHHHHHTTCCEEC
T ss_pred CCCCcCCC--CHHHcCCCCEEEEecCCC-CCC-HHHHHHHHCcCEEeC
Confidence 1 11111 123477899999999874 444 456667778876543
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=86.09 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=65.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-----CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-----GDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-----~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+|||+|||+|.||.+++..|+..|+ +|.++|+++++++......... ...+++.+++. +.++. +|+||++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~---aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN---SDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC---CCEEEEc
Confidence 4799999999999999999999997 9999999988776533221110 01134444566 44454 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+. .++++.+.+.+.. ++.+|+..||
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tN 120 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNN 120 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCC
Confidence 85542 1223334455443 7778877766
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=86.06 Aligned_cols=113 Identities=10% Similarity=0.155 Sum_probs=81.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---Cc-EEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FP-ISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++||||||+|.||..++..|.+.+ ++ |.++|+++++.+++.+... + ..+++++++++. ...|+|++|+
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~vD~V~i~t 74 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD------IPKAYGSYEELAKD-PNVEVAYVGT 74 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT------CSCEESSHHHHHHC-TTCCEEEECC
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEECC
Confidence 569999999999999999998764 34 4588999999998887652 3 468899999873 3489999999
Q ss_pred CCChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011931 82 KAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v 130 (474)
|+....+.+.. .+..|. ++++- -+......+++.+..+++|+.+.
T Consensus 75 p~~~H~~~~~~----al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 75 QHPQHKAAVML----CLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp CGGGHHHHHHH----HHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHHH----HHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 99865544433 334555 45553 23455677777777777776544
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-07 Score=88.71 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=74.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|+|||+|.||++++..|++.|. +|+++||++++.+++.+... .....++.+.+.. +|+||.++|.+-.-
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~------~~~~~~~~~~~~~---aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK------IFSLDQLDEVVKK---AKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCE------EEEGGGHHHHHHT---CSEEEECSSTTTTS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcc------cCCHHHHHhhhcC---CCEEEECCCCCCCC
Confidence 79999999999999999999998 99999999998877654321 2234566677776 99999999864110
Q ss_pred -HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 -DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 -~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
...+. .+.+.++.+|+|.... +. .+.+..+++|+.
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~-~T---~ll~~A~~~G~~ 216 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF-DT---PLVVKARKLGVK 216 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS-CC---HHHHHHHHHTCS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC-Cc---HHHHHHHHCCCc
Confidence 01111 1235689999999887 32 233344456765
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=88.38 Aligned_cols=114 Identities=13% Similarity=0.239 Sum_probs=81.9
Q ss_pred cCcEEEEcccHhHHHHHHHHH-H-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-E-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+++++++++. ..+|+|++|+|+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 97 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI----EAKDYNDYHDLIND-KDVEVVIITASN 97 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEEcCCc
Confidence 358999999999999999998 4 367766 899999999888776421 14578899999874 348999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
....+.+.. .+..|. ++++-- +......+++.+..++.|+.+
T Consensus 98 ~~h~~~~~~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 98 EAHADVAVA----ALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp GGHHHHHHH----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHH----HHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 865544433 234554 445432 445567777777777777643
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=87.17 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=83.4
Q ss_pred CcCcEEEEcccHhHH-HHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQ-NLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+++||||||+|.+|. .++..|...+++| .++|+++++.+++.+... ....+++++++++. .+.|+|++|+|+
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP-----SVPFAASAEQLITD-ASIDLIACAVIP 76 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST-----TCCBCSCHHHHHTC-TTCCEEEECSCG
T ss_pred CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC-----CCcccCCHHHHhhC-CCCCEEEEeCCh
Confidence 457999999999996 6888887778986 599999999888877542 14568899999863 238999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+.++. .++.|. ++++. .+..+...+++.+..++.|+.+.
T Consensus 77 ~~h~~~~~~----al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 77 CDRAELALR----TLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 765554443 344566 56653 34455677777777777776543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-07 Score=95.27 Aligned_cols=117 Identities=9% Similarity=0.182 Sum_probs=84.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHhCCCcchhhhHHHHHHHHhhCCCCCCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA---RIWKGGCIIRAVFLDRIKKAYDRNADLANL 386 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~---~iW~~gcii~s~ll~~~~~~~~~~~~l~~l 386 (474)
+.++++++|+++|++.+++|+.++|++.+++++ .++|..++. ..|+.| ..+|++++....++.+++.-...
T Consensus 182 ~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----lGl~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~ 255 (497)
T 2p4q_A 182 PAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRL-----GGFTDKEISDVFAKWNNG-VLDSFLVEITRDILKFDDVDGKP 255 (497)
T ss_dssp ETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTT-TTCBHHHHHHHHHHTCBCTTSSB
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHhcCC-ccccHHHHHHHHHHhcCCCCCcc
Confidence 457899999999999999999999999998862 236766555 558888 47999999887776654321112
Q ss_pred ccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011931 387 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 434 (474)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~ 434 (474)
.++...+...+|+++ +|+++.|.++|+|+|.+..++. +...++.+|
T Consensus 256 ~vd~i~D~~~~KgtG--~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r 303 (497)
T 2p4q_A 256 LVEKIMDTAGQKGTG--KWTAINALDLGMPVTLIGEAVFARCLSALKNER 303 (497)
T ss_dssp GGGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhhccchHH--HHHHHHHHHcCCCCchHHHHHHHHHhhcchhhH
Confidence 333322223335556 8999999999999999999984 444444333
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=86.90 Aligned_cols=111 Identities=11% Similarity=0.141 Sum_probs=79.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||...+..|.+. +++|. ++|+++++.+.. +.. ++..+++++++++. ...|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a-~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~~ 76 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA-AQK------GLKIYESYEAVLAD-EKVDAVLIATPND 76 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-HTT------TCCBCSCHHHHHHC-TTCCEEEECSCGG
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-Hhc------CCceeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 46899999999999999999876 67775 789999887643 221 35678899999873 2389999999997
Q ss_pred hhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+.+.. .+..|+ ++++- -+......+++.+..++.|+.+
T Consensus 77 ~h~~~~~~----al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 119 (359)
T 3e18_A 77 SHKELAIS----ALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF 119 (359)
T ss_dssp GHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHH----HHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 65554433 344565 44442 2344567777777777777654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-07 Score=80.55 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=79.2
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|+|||+ |.+|..++++|.+.||+ +|++||.+. +++ . ++..+.+++|+.+. +|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i------~---G~~~~~sl~el~~~---vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL------F---GEEAVASLLDLKEP---VDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE------T---TEECBSSGGGCCSC---CSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC------C---CEEecCCHHHCCCC---CCEEEEEeC
Confidence 47999999 89999999999999997 777777642 111 0 36678889988776 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+ ..+.++++++...- .+.+++..++. .+++.+.++++|+++++
T Consensus 80 ~-~~~~~v~~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 80 P-SALMDHLPEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp H-HHHTTTHHHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred H-HHHHHHHHHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 8 57788887776643 34677765553 35667777888999886
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-07 Score=93.69 Aligned_cols=117 Identities=18% Similarity=0.304 Sum_probs=85.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHhCCCcchhhhHHHHHHHHhh-CCCCCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL---ARIWKGGCIIRAVFLDRIKKAYDR-NADLAN 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i---~~iW~~gcii~s~ll~~~~~~~~~-~~~l~~ 385 (474)
+.++++++|+++|++++..++.++|++.+++++ .+++.+++ +..|+.| .+.|++++....++.+ +.....
T Consensus 178 ~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----~Gl~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~g~ 251 (474)
T 2iz1_A 178 ANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRI-----LGLSNAEIQAIFEEWNEG-ELDSYLIEITKEVLKRKDDEGEG 251 (474)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHTTCBCSSSSS
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCC-CccccHHHhhhhHhhcCCCCCCh
Confidence 457899999999999999999999999998862 23666555 4558888 4789999988887653 321111
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 434 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~ 434 (474)
..+|...+...+++++ +|+++.|.++|+|+|.+.+++. ++..++.+|
T Consensus 252 ~~vd~i~D~~~~k~tG--~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r 300 (474)
T 2iz1_A 252 YIVDKILDKAGNKGTG--KWTSESALDLGVPLPLITESVFARYISTYKDER 300 (474)
T ss_dssp BGGGGBCSCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHhhcccchH--HHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhh
Confidence 3444444333446666 9999999999999999999974 444444433
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-07 Score=88.31 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=77.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..++.|||+|.||++++..|++.|.+|+++||++++.+++. ... +... +.+++. . +|+||.++|.+..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~------~~~~-~~~~l~-~---~DiVInaTp~Gm~ 185 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG------CDCF-MEPPKS-A---FDLIINATSASLH 185 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT------CEEE-SSCCSS-C---CSEEEECCTTCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC------CeEe-cHHHhc-c---CCEEEEcccCCCC
Confidence 35799999999999999999999999999999999998887 321 1221 233322 3 9999999997632
Q ss_pred HHHHH--HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl--~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-+..+ +.+...++++.+|+|+...+ .|. +.+..+++|...++
T Consensus 186 ~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 186 NELPLNKEVLKGYFKEGKLAYDLAYGF--LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp CSCSSCHHHHHHHHHHCSEEEESCCSS--CCH-HHHHHHHTTCCEEC
T ss_pred CCCCCChHHHHhhCCCCCEEEEeCCCC--chH-HHHHHHHCcCEEEC
Confidence 11111 12223456789999999874 443 66666778876554
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.3e-07 Score=88.24 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=90.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+++||||||+|.||..++..|.+. ++++ .++|+++++.+++.+. +..+++++++++. ..+|+|++++|+
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~D~V~i~tp~ 79 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--------CVIESDWRSVVSA-PEVEAVIIATPP 79 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--------CEEESSTHHHHTC-TTCCEEEEESCG
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--------CcccCCHHHHhhC-CCCCEEEEeCCh
Confidence 346899999999999999999986 5665 4999999877654332 2456788898852 238999999998
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEe-cCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHH
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIID-GGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIED 161 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ 161 (474)
....+ ++.. .++.|. ++++ -.+..+...+++.+..++.|+.+....... -+ ..+..+++
T Consensus 80 ~~h~~-~~~~---al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r--------------~~-p~~~~~~~ 140 (315)
T 3c1a_A 80 ATHAE-ITLA---AIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL--------------FN-PAWEALKA 140 (315)
T ss_dssp GGHHH-HHHH---HHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG--------------GC-HHHHHHHH
T ss_pred HHHHH-HHHH---HHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh--------------cC-HHHHHHHH
Confidence 75443 3332 344565 5566 234456677777777777777654332211 11 23566777
Q ss_pred HHHHHhc
Q 011931 162 ILLKVAA 168 (474)
Q Consensus 162 ll~~lg~ 168 (474)
+++.+|.
T Consensus 141 ~i~~lG~ 147 (315)
T 3c1a_A 141 DLTSIGP 147 (315)
T ss_dssp THHHHCS
T ss_pred HHHHcCC
Confidence 7776664
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-07 Score=92.74 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=74.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|||+|.||+.+|+.|...|.+|++||+++.+..+....+ +. ..+++++++. +|+|++++.+..-+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 346 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEG-------YR-VVTMEYAADK---ADIFVTATGNYHVI 346 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcC-------CE-eCCHHHHHhc---CCEEEECCCccccc
Confidence 4799999999999999999999999999999988653333222 23 3478888887 99999998544222
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCch-hHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYE-NTERR 118 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~ 118 (474)
. .+.+..+++|.+|||++..... +...+
T Consensus 347 ~---~~~l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 347 N---HDHMKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp C---HHHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred C---HHHHhhCCCCcEEEEcCCCcchhchHHH
Confidence 1 3556778999999999998763 55555
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-07 Score=90.89 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=68.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-------C-Cc----------cccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-------L-PL----------FGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-------~-~~----------~~~~s~~e~~ 68 (474)
..+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+...-. . +. ....++++++
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l 263 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAI 263 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHH
Confidence 3589999999999999999999999999999999998887764321000 0 00 0011344555
Q ss_pred hhcCCCcEEEEec--CCChhHHHH-HHHHHhcccCCCEEEecCC
Q 011931 69 NSIQKPRVIIMLV--KAGAPVDET-IKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 69 ~~l~~~dvIil~v--p~~~~v~~v-l~~l~~~l~~g~iiId~st 109 (474)
.. +|+||.++ |.... ..+ -++....+++|.+|||++.
T Consensus 264 ~~---aDIVI~tv~iPg~~a-p~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 264 TK---FDIVITTALVPGRPA-PRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TT---CSEEEECCCCTTSCC-CCCBCHHHHHTSCTTCEEEETTG
T ss_pred hc---CCEEEECCCCCCccc-ceeecHHHHhcCCCCcEEEEEeC
Confidence 54 99999986 32111 111 2566778899999999875
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=88.11 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=79.2
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||.. ++..|.+. +++|. ++|+++++.+++.+... ....+++++++++. .+.|+|++|+|+
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 78 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS-----DIPVLDNVPAMLNQ-VPLDAVVMAGPP 78 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC-----SCCEESSHHHHHHH-SCCSEEEECSCH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEcCCc
Confidence 468999999999985 88988876 67776 88999999887765431 24578899999886 225999999998
Q ss_pred ChhHHHHHHHHHhcccCCCE-EEecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 84 GAPVDETIKTLSAYMEKGDC-IIDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~i-iId~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
....+.+. ..+..|.- +++-- +......+++.+..++.|+.+
T Consensus 79 ~~H~~~~~----~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 79 QLHFEMGL----LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HHHHHHHH----HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHH----HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 75444333 23445654 44422 344456777777777666543
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8e-07 Score=90.35 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=72.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......+ +. ..+++++++. +|+|+++..+...+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G-------~~-~~sL~eal~~---ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEG-------YQ-VLLVEDVVEE---AHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhC-------Ce-ecCHHHHHhh---CCEEEECCCCcCcc
Confidence 4799999999999999999999999999999987765554433 22 3488999887 99999876654222
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCc
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
. .+.+..+++|.+||+++...+
T Consensus 281 ~---~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 281 T---SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp C---TTTGGGCCTTEEEEECSSSGG
T ss_pred C---HHHHhhcCCCcEEEEeCCCCC
Confidence 1 245677899999999998764
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.7e-06 Score=84.38 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=81.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+..... .....+++++++++. ..+|+|++|+|+.
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTS 82 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGG
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CCCeeeCCHHHHhcC-CCCCEEEEcCChH
Confidence 46899999999999999999875 5666 58999999988877654200 013467889998863 2389999999987
Q ss_pred hhHHHHHHHHHhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011931 85 APVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
...+ ++. ..+..|..|+ +. .+......+++.+..++.|+.+..
T Consensus 83 ~h~~-~~~---~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~ 127 (362)
T 1ydw_A 83 LHVE-WAI---KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMD 127 (362)
T ss_dssp GHHH-HHH---HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHH-HHH---HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 5443 332 3355676444 42 234456667777777777876653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=84.86 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCC--CccccCCHHHHHhhcCCCcE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDL--PLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~--~~~~~~s~~e~~~~l~~~dv 76 (474)
|.+.++++||+|||+|.+|.+++..|+..|+ +|.++|+++++++.......+...+ +++...+..+.++ .+|+
T Consensus 1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~---~aDv 77 (318)
T 1y6j_A 1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK---DCDV 77 (318)
T ss_dssp ------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT---TCSE
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhC---CCCE
Confidence 3333445799999999999999999999998 9999999987765433222110000 1222222233344 4999
Q ss_pred EEEecCCChh---------------HHHHHHHHHhcccCCCEEEecCC
Q 011931 77 IIMLVKAGAP---------------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 77 Iil~vp~~~~---------------v~~vl~~l~~~l~~g~iiId~st 109 (474)
||++++.+.. ++++.+.+.+. .++.+|+..||
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN 124 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 9999987531 34444566655 47788888655
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-06 Score=83.61 Aligned_cols=115 Identities=13% Similarity=0.212 Sum_probs=79.9
Q ss_pred CCcCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 5 KQLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++|+||||||+|.||.. ++..+.+. +.+|. ++|+++++++++.++... ...++|++++++. +..|+|++|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I~t 94 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV-----PHAFGSYEEMLAS-DVIDAVYIPL 94 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-SSCSEEEECS
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-----CeeeCCHHHHhcC-CCCCEEEEeC
Confidence 45789999999999976 56666665 56765 889999999998876531 2468899999875 4479999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
|+....+-++.. ++.|+-| +.-- +....+.+++.+..++.|+.+
T Consensus 95 P~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 140 (350)
T 4had_A 95 PTSQHIEWSIKA----ADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV 140 (350)
T ss_dssp CGGGHHHHHHHH----HHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred CCchhHHHHHHH----HhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence 998665544433 3345544 4411 223456777777777766644
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=84.82 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCCCCCcCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
|.+..+++||||||+|.||.. .+..+.+. +++|. ++|++++++.+ ... ....+++++++++. ...|+|
T Consensus 1 M~~~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~-----~~~~~~~~~~ll~~-~~~D~V 71 (364)
T 3e82_A 1 MSLSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR---DLP-----DVTVIASPEAAVQH-PDVDLV 71 (364)
T ss_dssp ------CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH---HCT-----TSEEESCHHHHHTC-TTCSEE
T ss_pred CCCCCCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCC-----CCcEECCHHHHhcC-CCCCEE
Confidence 444445679999999999997 66667665 67775 88999987642 211 25678899999873 238999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEE
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~v 130 (474)
++|+|+....+.+.. .+..|+.|+.-- +......+++.+..++.|+.+.
T Consensus 72 ~i~tp~~~H~~~~~~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 72 VIASPNATHAPLARL----ALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp EECSCGGGHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred EEeCChHHHHHHHHH----HHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 999999765554433 344666555533 3445667777777777776543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=86.63 Aligned_cols=115 Identities=11% Similarity=0.119 Sum_probs=79.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++ ..+++++++++. ..+|+|++|+|
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~------~~~~~~~~~~~ll~~-~~~D~V~i~tp 76 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY------HLPKAYDKLEDMLAD-ESIDVIYVATI 76 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC------CCSCEESCHHHHHTC-TTCCEEEECSC
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEECCC
Confidence 356899999999999999999876 45554 8899999887776643 23 367899999872 23899999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+....+.+.. .+..|. ++++-- +......+++.+..++.|+.+..
T Consensus 77 ~~~h~~~~~~----al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 77 NQDHYKVAKA----ALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp GGGHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHH----HHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 9755444332 344555 445432 44556777777777777775543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.7e-07 Score=89.97 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=69.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc---------c-c------------cCCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL---------F-G------------FRDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~---------~-~------------~~s~ 64 (474)
..+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+...-...+ . . ..++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l 269 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV 269 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence 3589999999999999999999999999999999988877664421000000 0 0 1245
Q ss_pred HHHHhhcCCCcEEEEec--CCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 65 ESFVNSIQKPRVIIMLV--KAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
++++.. +|+||.++ |....-.-+-++....+++|.+|||++.
T Consensus 270 ~e~l~~---aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 270 AEHIAK---QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHT---CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHHhcC---CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence 566666 99999986 3211101112567778999999999985
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=91.97 Aligned_cols=108 Identities=8% Similarity=0.109 Sum_probs=79.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhhCCCCCCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNADLANL 386 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~gcii~s~ll~~~~~~~~~~~~l~~l 386 (474)
+.+.++++|++||++.+++++.++|++.++++. .+++..++.++ |+.|. ..|++++.....+.+++.-...
T Consensus 175 ~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~-----~G~~~~~~~~~~~~w~~g~-~~S~l~~~~~~~l~~~d~~~~~ 248 (482)
T 2pgd_A 175 DDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDV-----LGLGHKEMAKAFEEWNKTE-LDSFLIEITASILKFQDADGKH 248 (482)
T ss_dssp ETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHHHCBCTTSSB
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcCHHHHHHHHHHhcCCC-cCchHHHHHhHHhhccCCCCCe
Confidence 457889999999999999999999999998863 13666655544 88883 6899999877766654321223
Q ss_pred ccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH
Q 011931 387 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA 425 (474)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~ 425 (474)
.++...+...+++++ +|+++.|.++|+|+|.+.+++.
T Consensus 249 ~ld~i~d~~~~k~t~--~~~~~~A~~~Gv~~P~i~~av~ 285 (482)
T 2pgd_A 249 LLPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVF 285 (482)
T ss_dssp SGGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHH
T ss_pred eecccccccccccHH--HHHHHHHHHcCCCcchHHHHHH
Confidence 333333333335555 9999999999999999987664
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=84.92 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=82.3
Q ss_pred cCcEEEEccc-HhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLA-VMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG-~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+| .||..++..|.+. +++|. ++|+++++.+++.+.. ++..+++++++++. .+.|+|++++|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~ell~~-~~vD~V~i~tp~ 74 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATLAEMMQH-VQMDAVYIASPH 74 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSHHHHHHH-SCCSEEEECSCG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCHHHHHcC-CCCCEEEEcCCc
Confidence 4689999999 9999999999875 56665 8899999988887654 25678899999875 348999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+.+.. .+..|..| ++-- +......+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~----al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 119 (387)
T 3moi_A 75 QFHCEHVVQ----ASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLV 119 (387)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHH----HHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEE
Confidence 765544332 33455544 4422 3345667777777777776554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.8e-07 Score=92.76 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=81.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHhCCCcchhhhHHHHHHHHhhCCCCCCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL---ARIWKGGCIIRAVFLDRIKKAYDRNADLANL 386 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i---~~iW~~gcii~s~ll~~~~~~~~~~~~l~~l 386 (474)
+.++++++|+++|++.++.|+.++|++.+++++. + +|..++ +..|++| .+.|++++...+.+++++.-...
T Consensus 187 ~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~l---G--l~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~~~ 260 (480)
T 2zyd_A 187 ADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGL---N--LTNEELAQTFTEWNNG-ELSSYLIDITKDIFTKKDEDGNY 260 (480)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--CCHHHHHHHHHHHHHT-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CcccHHHHHHHHHHhcCCCCCcc
Confidence 4588999999999999999999999999988731 3 666554 4568988 46899999988887653321123
Q ss_pred ccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH
Q 011931 387 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA 425 (474)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~ 425 (474)
.++...+...+++++ +|+++.|.++|+|+|.+.+++.
T Consensus 261 ~v~~i~D~~~~k~tG--~~~~~~A~~~gv~~Pi~~~av~ 297 (480)
T 2zyd_A 261 LVDVILDEAANKGTG--KWTSQSALDLGEPLSLITESVF 297 (480)
T ss_dssp GGGGBCCCCCCCSCT--THHHHHHHHHTCCCHHHHHHHH
T ss_pred hHHHHHHHhcCchHH--HHHHHHHHHcCCCCchHHHHHH
Confidence 333333333456677 9999999999999999999974
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=86.14 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=82.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+|||.|||+|.+|+.++..|++ .++|.+.|++.++++++.+.... +.. ..+.+++.+.++++|+||.|+|+.
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~-----~~~d~~d~~~l~~~~~~~DvVi~~~p~~- 88 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATP-----LKVDASNFDKLVEVMKEFELVIGALPGF- 88 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEE-----EECCTTCHHHHHHHHTTCSEEEECCCGG-
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCc-----EEEecCCHHHHHHHHhCCCEEEEecCCc-
Confidence 3689999999999999998875 58999999999988876543211 111 234444444445599999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG 137 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg 137 (474)
.-..+++. .++.|..++|.|-.. ....++.+..++.|+.++. +++..|
T Consensus 89 ~~~~v~~~---~~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG 137 (365)
T 3abi_A 89 LGFKSIKA---AIKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPG 137 (365)
T ss_dssp GHHHHHHH---HHHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTB
T ss_pred ccchHHHH---HHhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCc
Confidence 33444443 345788999988554 3455666667777876663 454433
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=87.04 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=75.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+... .... +.+++.. ..||+++.|.... .
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~g------a~~v-~~~~ll~--~~~DIvip~a~~~-~ 242 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------ADAV-APNAIYG--VTCDIFAPCALGA-V 242 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CEEC-CGGGTTT--CCCSEEEECSCSC-C
T ss_pred cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-ChHHHhc--cCCcEeeccchHH-H
Confidence 357999999999999999999999999999999998887776531 2222 3344433 1399999886543 2
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+.. ..++.+ ...+|++.++.. .+..+..+.+.++|+.|+.
T Consensus 243 I~~---~~~~~l-g~~iV~e~An~p-~t~~ea~~~L~~~Gi~~~P 282 (364)
T 1leh_A 243 LND---FTIPQL-KAKVIAGSADNQ-LKDPRHGKYLHELGIVYAP 282 (364)
T ss_dssp BST---THHHHC-CCSEECCSCSCC-BSSHHHHHHHHHHTCEECC
T ss_pred hCH---HHHHhC-CCcEEEeCCCCC-cccHHHHHHHHhCCCEEec
Confidence 211 122334 346676676664 3444566778888886654
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.7e-06 Score=86.54 Aligned_cols=119 Identities=8% Similarity=0.097 Sum_probs=80.8
Q ss_pred cCcEEEEcccHhHH-HHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||. .++..|.+. +++| .++|+++++.+++.+..... ..++..+++++++++. .++|+|++|+|+
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~ll~~-~~vD~V~iatp~ 160 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPN 160 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC-cccccccCCHHHHhcC-CCCCEEEEcCCc
Confidence 46899999999997 899998875 5665 58999999988877653210 0002257788998862 238999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
....+.+.. .++.|. ++++. .+......+++.+..++.|+.+..
T Consensus 161 ~~h~~~~~~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v 206 (433)
T 1h6d_A 161 SLHAEFAIR----AFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMI 206 (433)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHH----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 755444333 344566 55553 344456677777777777776543
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=88.34 Aligned_cols=120 Identities=13% Similarity=0.225 Sum_probs=79.7
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
|-......||+|||+| +|...+..+.+. ++++. ++|+++++.+++.++. ++..++|.+++.+. .|++
T Consensus 1 M~~~~~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~~~l~~~---~D~v 70 (372)
T 4gmf_A 1 MPSASPKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSPEQITGM---PDIA 70 (372)
T ss_dssp ------CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSGGGCCSC---CSEE
T ss_pred CCCCCCCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCHHHHhcC---CCEE
Confidence 4445556789999999 899888888765 56766 8899999999988765 36678899999876 9999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
++++|+......-.+-....|..|.-|+.-=...+.+.+++.+..+++|+.|.
T Consensus 71 ~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 71 CIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp EECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEE
T ss_pred EEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999864421111112233456665554333455677777777777777654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-06 Score=75.23 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=76.6
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+|+|||+ |.+|..++.+|.+.||+ +|++++.. +++ . ++..+.+++|+... +|++++++|+
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i----~-----G~~~y~sl~~l~~~---vDlvvi~vp~ 87 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV----L-----GRKCYPSVLDIPDK---IEVVDLFVKP 87 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE----T-----TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE----C-----CeeccCCHHHcCCC---CCEEEEEeCH
Confidence 46999999 79999999999999997 56666653 111 1 36678889988776 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
..+.++++++...- .+.+++..++. .+++.+.++++|+++++.
T Consensus 88 -~~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGp 130 (144)
T 2d59_A 88 -KLTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVAN 130 (144)
T ss_dssp -HHHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEES
T ss_pred -HHHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcC
Confidence 47788887776543 34455543332 456777778889998863
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.7e-06 Score=81.16 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=66.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~-~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+++||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+ . ...++..+++. +.++. +|+||+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~---aDiVIi 81 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG---ADVVIV 81 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT---CSEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC---CCEEEE
Confidence 45799999999999999999999999 999999999876532211100 0 00124444555 44454 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...+. .++++...+... .++.+++..||-
T Consensus 82 aag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNP 126 (324)
T 3gvi_A 82 TAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNP 126 (324)
T ss_dssp CCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSS
T ss_pred ccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCC
Confidence 975432 123333445444 477888888874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.9e-06 Score=80.92 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC-C--CccccCCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD-L--PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~-~--~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++++||+|||+|.||.++|..|+..|. +|.++|+++++.+.......+... . +.+...+..+.++. +|+||+
T Consensus 4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~---aDvVii 80 (316)
T 1ldn_A 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRD---ADLVVI 80 (316)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTT---CSEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCC---CCEEEE
Confidence 355799999999999999999998875 899999998766543222111000 0 11222233344444 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+++.+. .+.++...+.+.. +..+++..||
T Consensus 81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tN 124 (316)
T 1ldn_A 81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATN 124 (316)
T ss_dssp CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSS
T ss_pred cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCC
Confidence 987653 1233444555544 6677777777
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.5e-06 Score=80.17 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=66.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHH----HHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDET----VERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~~~~~-~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++.. ....... ...++..+++ .+.++. +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 689999999999999999999998 999999999887522 1111000 0012344455 555555 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+.+. .++++...+... .|+.+|+..||-
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCc
Confidence 85542 122333445544 578888888863
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-06 Score=84.02 Aligned_cols=114 Identities=18% Similarity=0.074 Sum_probs=78.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+++.|+|+|.||++++..|++.|. +|+++||++++.+++.+.....+ .+. ..+++++... +|+||.++|.+.
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~-~~~~~~l~~~---aDiIInaTp~gm 199 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVK-AQAFEQLKQS---YDVIINSTSASL 199 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEE-EEEGGGCCSC---EEEEEECSCCCC
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--Cee-EeeHHHhcCC---CCEEEEcCcCCC
Confidence 3579999999999999999999996 99999999999988887653210 112 2244444344 999999999874
Q ss_pred hHHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe-EE
Q 011931 86 PVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL-YL 130 (474)
Q Consensus 86 ~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~v 130 (474)
..+.. +. ...+.++.+|+|+...+ ..|. +.+..+++|.. .+
T Consensus 200 ~~~~~~l~--~~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~G~~~~~ 242 (281)
T 3o8q_A 200 DGELPAID--PVIFSSRSVCYDMMYGK-GYTV-FNQWARQHGCAQAI 242 (281)
T ss_dssp ----CSCC--GGGEEEEEEEEESCCCS-SCCH-HHHHHHHTTCSEEE
T ss_pred CCCCCCCC--HHHhCcCCEEEEecCCC-ccCH-HHHHHHHCCCCEEE
Confidence 32211 11 23467889999998764 4443 44566777775 44
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-06 Score=86.96 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=73.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|||+|.||..+|+.+...|++|+++|+++.+.+...+.+ +. ..++++++.. +|+||.+++....+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------a~-~~~l~e~l~~---aDvVi~atgt~~~i 343 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------FD-VVTVEEAIGD---ADIVVTATGNKDII 343 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CE-EecHHHHHhC---CCEEEECCCCHHHH
Confidence 5799999999999999999999999999999999877665543 23 3467787776 99999999876433
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCc
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
. .+.++.+++|.+|++.+....
T Consensus 344 ~---~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 344 M---LEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp C---HHHHHHSCTTCEEEECSSSGG
T ss_pred H---HHHHHhcCCCcEEEEeCCCCC
Confidence 2 245566889999999998653
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=79.90 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=80.2
Q ss_pred CcCcEEEEccc-HhHHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAGLA-VMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIGlG-~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++.||||||+| .||...+..|.+. +++| .++|+++++.+++.+.... ...+++++++++. ...|+|++|+
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i~t 90 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLTL 90 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEECC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCHHHHhcC-CCCCEEEEeC
Confidence 34689999999 8999999999876 4666 5899999999888776421 2568899999874 3489999999
Q ss_pred CCChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 82 KAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|+....+-+.. .++.|. +++.- -+....+.+++.+..++.|+.+
T Consensus 91 p~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 136 (340)
T 1zh8_A 91 PVELNLPFIEK----ALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV 136 (340)
T ss_dssp CGGGHHHHHHH----HHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred CchHHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 98755443333 344555 44542 1234456667777777766644
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-06 Score=85.18 Aligned_cols=113 Identities=9% Similarity=0.158 Sum_probs=76.4
Q ss_pred cCcEEEEcccHhHHHHHHH-H-HH-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALN-I-AE-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~-L-~~-~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++||||||+|.||..+... + .. .+++|. ++|+++++.+...+.. ++..+++++++++. .+.|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS------HIHFTSDLDEVLND-PDVKLVVVCTH 74 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT------TCEEESCTHHHHTC-TTEEEEEECSC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC------CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 5689999999999975444 4 32 367776 8999987763322211 35678899999874 34799999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+.+. ..+..|..|+.-- +......+++.+..++.|+.+.
T Consensus 75 ~~~h~~~~~----~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 75 ADSHFEYAK----RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp GGGHHHHHH----HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHH----HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 976555443 3345676666533 3445667777777777776553
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.8e-06 Score=79.86 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=65.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh---cCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK---EGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~---~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+++||+|||+|.+|.+++..|+..|. +|.++|+++++++.......+ ..+.++....+..+.++. +|+||++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~---aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHD---ADLVVIC 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTT---CSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCC---CCEEEEC
Confidence 44799999999999999999998885 899999998776643221110 000012222233444454 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+. .++++.+.+.+. .++.+|+..||
T Consensus 82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (317)
T 3d0o_A 82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATN 124 (317)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 97652 123333455554 57788888765
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-06 Score=82.87 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=64.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||..++..|.+. +++|. ++|+++++++. .+. .....+++.+. .++|+|++|+|+.
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~-----~~~~~~~l~~~----~~~DvViiatp~~ 76 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQ-----PFRVVSDIEQL----ESVDVALVCSPSR 76 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCT-----TSCEESSGGGS----SSCCEEEECSCHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCC-----CcCCHHHHHhC----CCCCEEEECCCch
Confidence 46899999999999999999874 67877 79999887654 111 11123344333 3499999999986
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL 128 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~ 128 (474)
...+ .+ ...++.|..|++.... .+....++.+..++.|..
T Consensus 77 ~h~~-~~---~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~ 119 (304)
T 3bio_A 77 EVER-TA---LEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA 119 (304)
T ss_dssp HHHH-HH---HHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred hhHH-HH---HHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 4433 22 3445678888886543 223345555666666654
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=84.13 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=82.1
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+||||||+ |.||...+..|.+. +++|+ ++|+++++.+++.+..... ....+++++++++. ...|+|++|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~~~~~d~~ell~~-~~vD~V~I~ 115 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVVS 115 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEEC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEc
Confidence 58999999 99999999999886 67764 8999999998887754210 12468899999863 238999999
Q ss_pred cCCChhHHHHHHHHHhcccCC-------CEEEec-CCCCchhHHHHHHHHHHcC-CeE
Q 011931 81 VKAGAPVDETIKTLSAYMEKG-------DCIIDG-GNEWYENTERREKAMAELG-LLY 129 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g-------~iiId~-st~~~~~~~~~~~~l~~~g-~~~ 129 (474)
+|+....+.++.. +..| .++++. -+....+.+++.+..++.| +.+
T Consensus 116 tp~~~H~~~~~~a----l~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 169 (479)
T 2nvw_A 116 VKVPEHYEVVKNI----LEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 169 (479)
T ss_dssp SCHHHHHHHHHHH----HHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred CCcHHHHHHHHHH----HHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9987555444433 3345 477775 3445567777777777777 544
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=80.42 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=78.2
Q ss_pred CcEEEEcccHhHH-HHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQ-NLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~-~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+||||||+|.+|. .++..+...+++|. ++|+++++.+++.+... ....+++++++++. .+.|+|++|+|+..
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~I~tp~~~ 100 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-----DARRIATAEEILED-ENIGLIVSAAVSSE 100 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-----SCCEESCHHHHHTC-TTCCEEEECCCHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-----CCcccCCHHHHhcC-CCCCEEEEeCChHH
Confidence 5899999999995 57777777888865 88999999998887642 14578899999874 34799999999875
Q ss_pred hHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCe
Q 011931 86 PVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~ 128 (474)
..+.+.. .+..|. +++.-- +......+++.+..++.|+.
T Consensus 101 H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 141 (361)
T 3u3x_A 101 RAELAIR----AMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRI 141 (361)
T ss_dssp HHHHHHH----HHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHH----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 5443333 344555 444422 33345666777766666654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-06 Score=83.15 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=76.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|.|+|+|.||++++..|++.|.+|+++||++++.+++.+.....+ .+. ..+.+++.+ ..+|+||.++|.+..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~-~~~~~~~~~--~~~DivIn~t~~~~~ 193 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQ-AVSMDSIPL--QTYDLVINATSAGLS 193 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEE-EEEGGGCCC--SCCSEEEECCCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeE-EeeHHHhcc--CCCCEEEECCCCCCC
Confidence 357999999999999999999999999999999999988876542100 111 122333222 149999999998643
Q ss_pred HHHHHHHH-HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe-EEe
Q 011931 87 VDETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLL-YLG 131 (474)
Q Consensus 87 v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~v~ 131 (474)
..+. .+ ...+.++.+++|.+.....++. +.+..+++|.. +++
T Consensus 194 -~~~~-~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 194 -GGTA-SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred -CCCC-CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 1110 11 1124568899999986544243 44556677775 553
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=81.69 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=63.9
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHH---HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSK---VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~---~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..++||+|||+|.||..+|..|+.+|+ +|.++|++++. ..++..... .+++.+.+++ .++. ||+||+
T Consensus 12 ~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~----~~i~~t~d~~-~l~~---aD~Vi~ 83 (303)
T 2i6t_A 12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL----PNVEISKDLS-ASAH---SKVVIF 83 (303)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC----TTEEEESCGG-GGTT---CSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC----CCeEEeCCHH-HHCC---CCEEEE
Confidence 346799999999999999999999999 99999999852 222222111 1355556663 3444 999999
Q ss_pred ecCCCh--------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++..+. .+.+++..+.+.. +..+++..||.
T Consensus 84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp CCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh
Confidence 973321 1344555666654 78888888884
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.9e-06 Score=81.92 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=70.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH------HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS------KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~------~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++|+|||.|+.|.+-|+||.+.|.+|++--|... ..+.+.+.+ +++ .+.+|+++. +|+|++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~G-------f~v-~~~~eA~~~---ADvV~~L~ 106 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 106 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTT-------CEE-EEHHHHGGG---CSEEEECS
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCC-------CEe-cCHHHHHHh---CCEEEEeC
Confidence 5799999999999999999999999999887432 222333322 443 478999998 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEec
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDG 107 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~ 107 (474)
|+. .-..+.+.+.|+|++|+++.-.
T Consensus 107 PD~-~q~~vy~~I~p~lk~G~~L~fa 131 (491)
T 3ulk_A 107 PDK-QHSDVVRTVQPLMKDGAALGYS 131 (491)
T ss_dssp CGG-GHHHHHHHHGGGSCTTCEEEES
T ss_pred Chh-hHHHHHHHHHhhCCCCCEEEec
Confidence 986 5566778899999999988753
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=79.31 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=77.9
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||.. .+..+.+. +++|. ++|+++++.+ +... +...+++++++++. .+.|+|++|+|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 77 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWP-----AIPVVSDPQMLFND-PSIDLIVIPTPN 77 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTCS-----SCCEESCHHHHHHC-SSCCEEEECSCT
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhCC-----CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 358999999999997 77777765 67765 8899998765 1111 35678899999874 448999999999
Q ss_pred ChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+.+.. .++.|. ++++.- +......+++.+..++.|+.+.
T Consensus 78 ~~H~~~~~~----al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 78 DTHFPLAQS----ALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp TTHHHHHHH----HHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH----HHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 866554433 344565 555543 4455667777777777776543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.4e-06 Score=87.04 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=78.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHh-CCCcchhhhHHHHHHHHhhCCCCCC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA---RIWK-GGCIIRAVFLDRIKKAYDRNADLAN 385 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~---~iW~-~gcii~s~ll~~~~~~~~~~~~l~~ 385 (474)
+.+.++++|+++|++.+.+++.++|.+.++++. + ++.+++. ..|+ .| ...|++++.....+++.+.-..
T Consensus 177 ~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~----G--~~~~~~~~l~~~w~~~g-~~~s~l~~~~~~~l~~~d~~G~ 249 (478)
T 1pgj_A 177 SGGAGSCVKMYHNSGEYAILQIWGEVFDILRAM----G--LNNDEVAAVLEDWKSKN-FLKSYMLDISIAAARAKDKDGS 249 (478)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTS-TTCBHHHHHHHHHHHCBCTTSS
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHHhccCC-CcCchHHHhhchhhhcCCCCCh
Confidence 457889999999999999999999999998853 3 6665544 4577 77 5789999988777754321111
Q ss_pred CccChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH
Q 011931 386 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA 425 (474)
Q Consensus 386 ll~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~ 425 (474)
..+|...+...+++++ +|+++.|.++|+|+|.+.+++.
T Consensus 250 ~~ld~i~D~~~~kgtg--~~~~~~A~~~Gv~~Pi~~~av~ 287 (478)
T 1pgj_A 250 YLTEHVMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVV 287 (478)
T ss_dssp BGGGGBCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHH
T ss_pred hHHHHHHHHhcCccHH--HHHHHHHHHhCCCChHHHHHHH
Confidence 2333222222234445 9999999999999999999985
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=81.88 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=80.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccC----CHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFR----DPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~----s~~e~~~~l~~~dvIil~ 80 (474)
++||||||+|.||...+..|.+. +++| .++|+++++++++.+.....+......++ +++++++. ...|+|++|
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~-~~vD~V~i~ 98 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD-KNIDAVFVS 98 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC-TTCCEEEEC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC-CCCCEEEEc
Confidence 45899999999999999999875 6776 48899999988876532110000134566 89998863 238999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCE-EEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDC-IIDG-GNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~i-iId~-st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+|+....+.++. .++.|+. +++- -+....+.+++.+..++.|+.+.
T Consensus 99 tp~~~h~~~~~~----al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 99 SPWEWHHEHGVA----AMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CCGGGHHHHHHH----HHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CCcHHHHHHHHH----HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 998765554433 3445664 4442 23344666777777777776543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=78.19 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=65.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-----CCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-----GDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-----~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
.++||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+. ...++..+.+. +.++. +|+||+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~~~---aDvVIi 79 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDLEN---SDVVIV 79 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHHCC---CCEEEE
Confidence 35799999999999999999999988 9999999998765333221110 00123334444 44444 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+.+. .++++...+.... |+.+++..||-
T Consensus 80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNP 124 (321)
T 3p7m_A 80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNP 124 (321)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCc
Confidence 975431 1233334555544 77788888763
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-05 Score=81.74 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=53.7
Q ss_pred cCcEEEEcccHh--HHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhh----hc-CCCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVM--GQNLALNIAEK----GFPISVYNRTTSKVDETVERAK----KE-GDLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~m--G~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~----~~-~~~~~~~~~s~~e~~~~l~~~d 75 (474)
++||+|||+|.| |.++|..|+.. |++|.+||+++++++....... .. ...+++.+++++++++. ||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d---AD 79 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 79 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC---CC
Confidence 469999999997 46667788754 8999999999988765433211 00 01145666788777777 99
Q ss_pred EEEEecCC
Q 011931 76 VIIMLVKA 83 (474)
Q Consensus 76 vIil~vp~ 83 (474)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999975
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=79.17 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=75.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--------CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--------GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--------G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
-||||||+|.||..-+..+... +.+|+ ++|+++++++++.++... ...+++.+++++. ++.|+|+
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~ 99 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-----EKATADWRALIAD-PEVDVVS 99 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-----SEEESCHHHHHHC-TTCCEEE
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-----CeecCCHHHHhcC-CCCcEEE
Confidence 4799999999999877766432 45654 889999999998876531 2468899999875 3479999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
+|+|+....+.++.. ++.|.-| +.-- +....+.+++.+..++.|+.+
T Consensus 100 IatP~~~H~~~a~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 148 (393)
T 4fb5_A 100 VTTPNQFHAEMAIAA----LEAGKHVWCEKPMAPAYADAERMLATAERSGKVA 148 (393)
T ss_dssp ECSCGGGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred ECCChHHHHHHHHHH----HhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence 999998666555443 3455544 4421 223356667777777766543
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-05 Score=80.99 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=79.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC---------CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK---------GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~---------G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
+||||||+|.||...+..|.+. +.+|. ++|+++++++++.++... ...+++.+++++. .+.|+|
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-----~~~y~d~~~ll~~-~~vD~V 100 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-----EKAYGDWRELVND-PQVDVV 100 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-----CeEECCHHHHhcC-CCCCEE
Confidence 5899999999999998888764 34554 889999999998876531 2467899999875 347999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
++|+|+....+-++.. ++.|+-| +.-= +....+.+++.+..++.|+.+
T Consensus 101 ~I~tp~~~H~~~~~~a----l~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~ 150 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAA----IAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKT 150 (412)
T ss_dssp EECSCGGGHHHHHHHH----HHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred EECCCcHHHHHHHHHH----HHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCee
Confidence 9999998665554443 3455544 4421 223456677777766767644
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.6e-06 Score=85.05 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=69.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-c---ccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-F---GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~---~~~s~~e~~~~l~~~dvIil~vp 82 (474)
-.+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.... .+ . ...++.+++.. +|+||.+++
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----~~~~~~~~~~~l~~~l~~---aDvVi~~~~ 240 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----RIHTRYSSAYELEGAVKR---ADLVIGAVL 240 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SSEEEECCHHHHHHHHHH---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----eeEeccCCHHHHHHHHcC---CCEEEECCC
Confidence 3579999999999999999999999999999999988777653311 11 0 12245566666 999999886
Q ss_pred CChh-HHHH-HHHHHhcccCCCEEEecCC
Q 011931 83 AGAP-VDET-IKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 83 ~~~~-v~~v-l~~l~~~l~~g~iiId~st 109 (474)
.+.. ...+ ..+..+.+++|.+|||.+.
T Consensus 241 ~p~~~t~~li~~~~l~~mk~g~~iV~va~ 269 (377)
T 2vhw_A 241 VPGAKAPKLVSNSLVAHMKPGAVLVDIAI 269 (377)
T ss_dssp CTTSCCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred cCCCCCcceecHHHHhcCCCCcEEEEEec
Confidence 4421 1111 2445667889999999883
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=83.44 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=82.5
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHC--CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+||||||+ |.||..++..|.+. +++| .++|+++++.+++.+..... .+..+++++++++. ...|+|++|
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~~ll~~-~~vD~V~i~ 96 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS---NATAFPTLESFASS-STIDMIVIA 96 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT---TCEEESSHHHHHHC-SSCSEEEEC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEe
Confidence 58999999 99999999999986 6776 58999999988887654210 12367899999873 238999999
Q ss_pred cCCChhHHHHHHHHHhcc---cCCCEEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011931 81 VKAGAPVDETIKTLSAYM---EKGDCIIDG-GNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l---~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+|+....+.++..+.... +...++++. .+....+.+++.+..++.|+.+.
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 998755554443332210 002467773 34455677777777777776543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=78.01 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc-CC--CCccccCCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE-GD--LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-~~--~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+..+||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+. .. .++..+++..+.++. +|+||+
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~---aDvVvi 79 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKD---ADIVCI 79 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTT---CSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCC---CCEEEE
Confidence 345799999999999999999999997 8999999998877632211110 00 012223333344444 999999
Q ss_pred ecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...+. . ++++.+.+... .++.+|+..||-
T Consensus 80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCCh
Confidence 985432 1 22333444443 467788888874
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=81.79 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=56.5
Q ss_pred cCcEEEEcccHh--HHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhc--CCCCccccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAGLAVM--GQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKE--GDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIGlG~m--G~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~--~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
.+||+|||+|.| |.+++..|+. .| +|++||++++++++.......- ...+++.+++++++++. +|+||
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d---ADfVI 80 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA---ADIVI 80 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---CSEEE
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---CCEEE
Confidence 369999999997 5789988886 57 9999999998877654322100 01146678899999888 99999
Q ss_pred EecCCC
Q 011931 79 MLVKAG 84 (474)
Q Consensus 79 l~vp~~ 84 (474)
++++.+
T Consensus 81 ~airvG 86 (450)
T 3fef_A 81 ISILPG 86 (450)
T ss_dssp ECCCSS
T ss_pred eccccC
Confidence 999864
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-05 Score=65.78 Aligned_cols=100 Identities=13% Similarity=0.228 Sum_probs=64.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCc-cc-cCCHHHHHh-hcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPL-FG-FRDPESFVN-SIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~~~~~~-~~-~~s~~e~~~-~l~~~dvIil~vp~ 83 (474)
++|.|+|+|.+|+.++..|.+.|++|+++|++ +++.+.+.+.... +..+ .. .++.+.+.+ .++++|.||+++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~--~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC--CCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 47999999999999999999999999999998 4655555432211 0011 11 123333322 25669999999998
Q ss_pred ChhHHHHHHHHHhcc-cCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYM-EKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l-~~g~iiId~st~ 110 (474)
+ .....+...+..+ +...+++...+.
T Consensus 82 d-~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 82 D-ADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp H-HHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred h-HHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 6 4444444444445 345666665553
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=81.17 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=74.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKA 83 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~ 83 (474)
..++|.|+|+|.+|..+++.|.+.|++|++.|+++++++.+.+.+.. -+....+..++... ++++|+||+++++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~----vi~GDat~~~~L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDD 78 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC----CEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe----EEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence 45689999999999999999999999999999999999988765431 01222223333322 5679999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+.... .+-..+..+.+...||-..+.. .....+...|+..+
T Consensus 79 ~~~n~-~i~~~ar~~~p~~~Iiara~~~-----~~~~~L~~~Gad~V 119 (413)
T 3l9w_A 79 PQTNL-QLTEMVKEHFPHLQIIARARDV-----DHYIRLRQAGVEKP 119 (413)
T ss_dssp HHHHH-HHHHHHHHHCTTCEEEEEESSH-----HHHHHHHHTTCSSC
T ss_pred hHHHH-HHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHCCCCEE
Confidence 64333 3333444455654444333321 23344555665443
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-05 Score=76.12 Aligned_cols=99 Identities=11% Similarity=0.163 Sum_probs=63.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC--hHHHHHHHHhhhh----c-CCCCccccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--TSKVDETVERAKK----E-GDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~~~~----~-~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
.+||+|||+|.||.++|..|+.+|+ +|.++|++ +++.+.......+ . ...++..+++.++ ++. +|+||
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~~~---aDvVI 83 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-TAD---SDVVV 83 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GTT---CSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-hCC---CCEEE
Confidence 4589999999999999999999999 99999999 4544432211100 0 0012344445433 344 99999
Q ss_pred EecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 79 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++...+. .++++.+.+... .++.+++..||-
T Consensus 84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNP 129 (315)
T 3tl2_A 84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNP 129 (315)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSS
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCCh
Confidence 9985432 122333445444 477888888874
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=81.85 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=70.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|||+|.+|+.+|+.+...|.+|+++|+++.+..+....+ +. ..+++++++. +|+|++++.+..
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G-------~~-vv~LeElL~~---ADIVv~atgt~~-- 314 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDG-------FE-VVTLDDAAST---ADIVVTTTGNKD-- 314 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECCSSSS--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcC-------ce-eccHHHHHhh---CCEEEECCCCcc--
Confidence 4799999999999999999999999999999987654443322 22 3478898888 999999876542
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~ 112 (474)
++ .+.+..+++|.+||+++....
T Consensus 315 --lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 315 --VITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --SBCHHHHHHSCTTEEEEECSSSTT
T ss_pred --ccCHHHHhcCCCCeEEEEcCCCCc
Confidence 23 455667899999999988753
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.5e-06 Score=80.39 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=77.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||+|.||++++..|++.|. +|+++||++++.+++.+... .....++. . ..+|+||.++|.+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~--~---~~~DivInaTp~gm~ 188 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE--N---QQADILVNVTSIGMK 188 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT--T---CCCSEEEECSSTTCT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC------Cccchhhh--c---ccCCEEEECCCCCcc
Confidence 579999999999999999999997 89999999999988876532 11111221 2 239999999997632
Q ss_pred HH---HHHHHH-HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 87 VD---ETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 87 v~---~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.. +.. .+ ...+.++.+++|....+ ..| .+.+..+++|..+++.
T Consensus 189 ~~~~~~~~-~~~~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~i~G 235 (271)
T 1npy_A 189 GGKEEMDL-AFPKAFIDNASVAFDVVAMP-VET-PFIRYAQARGKQTISG 235 (271)
T ss_dssp TSTTTTSC-SSCHHHHHHCSEEEECCCSS-SSC-HHHHHHHHTTCEEECH
T ss_pred CccccCCC-CCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCCCEEECC
Confidence 10 000 01 12345688999998744 444 5666677888877654
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-05 Score=78.87 Aligned_cols=115 Identities=13% Similarity=0.208 Sum_probs=79.6
Q ss_pred CcEEEEcccH---hHHHHHHHHHHCC-CcEE--EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc----CCCcEE
Q 011931 8 TRIGLAGLAV---MGQNLALNIAEKG-FPIS--VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI----QKPRVI 77 (474)
Q Consensus 8 ~~IgiIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l----~~~dvI 77 (474)
+||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+++++++++.- ...|+|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD---PSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC---GGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC---cccccCCHHHHHhcccccCCCCcEE
Confidence 4899999999 9999988887765 5765 6799999998888765210 015788999998641 348999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCE-EEecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDC-IIDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~i-iId~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
++|+|+....+-+.. .++.|.- +++-- +......+++.+..++.|+.+
T Consensus 115 ~I~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 164 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKE----FLKRGIHVICDKPLTSTLADAKKLKKAADESDALF 164 (417)
T ss_dssp EECSCTTSHHHHHHH----HHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred EECCCcHHHHHHHHH----HHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 999999865544332 3445654 44432 334466777777777777654
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=78.60 Aligned_cols=112 Identities=17% Similarity=0.249 Sum_probs=75.9
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||.. .+..+.+. +++|. ++|+++++. .+... +...+++++++++. ...|+|++|+|
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp 74 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDFP-----DAEVVHELEEITND-PAIELVIVTTP 74 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHCT-----TSEEESSTHHHHTC-TTCCEEEECSC
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HhhCC-----CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 3468999999999997 67777655 67765 889998763 22221 25678899999873 23899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+.+.. .+..|+-| ++-- +......+++.+..++.|+.+.
T Consensus 75 ~~~H~~~~~~----al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 75 SGLHYEHTMA----CIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp TTTHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHH----HHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9866554433 34456544 4431 3345667777777777776543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-06 Score=84.76 Aligned_cols=90 Identities=8% Similarity=0.089 Sum_probs=69.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|+|+|.+|..+|+.|...|.+|+++|+++.+..+....+ +. ..++++++.. +|+|++|..+.
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G-------~~-v~~Leeal~~---ADIVi~atgt~--- 286 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG-------FR-LVKLNEVIRQ---VDIVITCTGNK--- 286 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCS---
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcC-------CE-eccHHHHHhc---CCEEEECCCCc---
Confidence 4799999999999999999999999999999987655444332 22 3578888887 99999974332
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~ 112 (474)
.++ .+.+..+++|.+||+++...+
T Consensus 287 -~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 287 -NVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp -CSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred -ccCCHHHHHhcCCCcEEEEecCCCc
Confidence 233 355667889999999998764
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.2e-06 Score=76.77 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=60.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
||||+|+|+|.||+.++..+.+.++++. ++|++++. .. ++..+++++++. . +|+||-+.++.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~-------gv~v~~dl~~l~-~---~DVvIDft~p~- 65 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TT-------PYQQYQHIADVK-G---ADVAIDFSNPN- 65 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------C-------CSCBCSCTTTCT-T---CSEEEECSCHH-
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cC-------CCceeCCHHHHh-C---CCEEEEeCChH-
Confidence 6899999999999999999998877765 57988762 11 356778888876 5 99998555432
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
.+...+ . +..|.-+|..+|+..
T Consensus 66 a~~~~~----~-l~~g~~vVigTTG~s 87 (243)
T 3qy9_A 66 LLFPLL----D-EDFHLPLVVATTGEK 87 (243)
T ss_dssp HHHHHH----T-SCCCCCEEECCCSSH
T ss_pred HHHHHH----H-HhcCCceEeCCCCCC
Confidence 333333 2 677777777777753
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=78.54 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=69.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----CCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..+||+|||+|.||.++|..|+.+|+ +|.++|+++++++.......+. ...++..+.++++ .+. ||+||+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~d---aDiVIi 95 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAG---SKLVVI 95 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSS---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCC---CCEEEE
Confidence 35799999999999999999999997 8999999998776543221110 0002344556655 344 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...+. .++++...+.+. .++.+++..||-
T Consensus 96 taG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNP 140 (330)
T 3ldh_A 96 TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPEL 140 (330)
T ss_dssp CCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCc
Confidence 875442 234455666665 678888888874
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.6e-05 Score=75.03 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=75.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+++.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+. ..+.+++.+ ..+|+||.++|.+..
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~~--~~~DivVn~t~~~~~ 193 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQ-ALSMDELEG--HEFDLIINATSSGIS 193 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEE-ECCSGGGTT--CCCSEEEECCSCGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--Cee-EecHHHhcc--CCCCEEEECCCCCCC
Confidence 357999999999999999999999999999999999888876532110 111 123333321 249999999997632
Q ss_pred HHHHHHHHH-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETIKTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
..+ ..+. ..+.++.+++|.+... ..+. ..+..+++|..
T Consensus 194 -~~~-~~i~~~~l~~~~~v~D~~y~p-~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 194 -GDI-PAIPSSLIHPGIYCYDMFYQK-GKTP-FLAWCEQRGSK 232 (271)
T ss_dssp -TCC-CCCCGGGCCTTCEEEESCCCS-SCCH-HHHHHHHTTCC
T ss_pred -CCC-CCCCHHHcCCCCEEEEeccCC-cCCH-HHHHHHHcCCC
Confidence 111 0111 2356889999998864 4443 44555667764
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=79.25 Aligned_cols=114 Identities=11% Similarity=0.153 Sum_probs=74.7
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+||||||+|.||.. .+..+.+. +++|. ++|++ +.+++.+..... ++..+++++++++. .+.|+|++|+|+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp~ 75 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEK---GVNFTADLNELLTD-PEIELITICTPA 75 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTT---TCEEESCTHHHHSC-TTCCEEEECSCG
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCC---CCeEECCHHHHhcC-CCCCEEEEeCCc
Confidence 569999999999994 55556554 67775 88988 444554432111 35678899999874 347999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+.+.. .+..|..| ++-- +......+++.+..+++|+.+.
T Consensus 76 ~~h~~~~~~----al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 76 HTHYDLAKQ----AILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp GGHHHHHHH----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH----HHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 765544433 34456544 4422 3344567777777777776543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=81.87 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=54.2
Q ss_pred CcEEEEcccHh-HHHHHHHHHHC-----CCcEEEEeCChHHHHHHHHhhh----hcC-CCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETVERAK----KEG-DLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~~~~----~~~-~~~~~~~~s~~e~~~~l~~~dv 76 (474)
+||+|||+|.+ |.++|..|+.+ +++|.+||+++++++....... ..+ ..++..+++++++++. +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 48999999998 66688888887 6799999999988765432110 000 1135566788777777 999
Q ss_pred EEEecCCC
Q 011931 77 IIMLVKAG 84 (474)
Q Consensus 77 Iil~vp~~ 84 (474)
||+++|.+
T Consensus 106 VViaag~~ 113 (472)
T 1u8x_X 106 VMAHIRVG 113 (472)
T ss_dssp EEECCCTT
T ss_pred EEEcCCCc
Confidence 99999885
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.5e-05 Score=77.45 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=80.8
Q ss_pred cCcEEEEcccH---hHHHHHHHHHHCC-CcEE--EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc----CCCcE
Q 011931 7 LTRIGLAGLAV---MGQNLALNIAEKG-FPIS--VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI----QKPRV 76 (474)
Q Consensus 7 ~~~IgiIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l----~~~dv 76 (474)
++||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+++++++++.- ...|+
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~ 88 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVD---SERCYADYLSMFEQEARRADGIQA 88 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCC---GGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCC---cceeeCCHHHHHhcccccCCCCCE
Confidence 35899999999 9999998887765 6765 5799999998887754210 015788999998741 23899
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEe-c-CCCCchhHHHHHHHHHHcCCeE
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIID-G-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId-~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
|++|+|+....+.++. .+..|.-|+- - -+......+++.+..++.|+.+
T Consensus 89 V~i~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 139 (398)
T 3dty_A 89 VSIATPNGTHYSITKA----ALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIV 139 (398)
T ss_dssp EEEESCGGGHHHHHHH----HHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred EEECCCcHHHHHHHHH----HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence 9999999865544433 3345655543 1 1234466777777777777654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.6e-05 Score=75.49 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=65.7
Q ss_pred cEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
||+|||+|.||.+++..|+.+|+ +|.++|+++++++.......+ .+ ..+++.+.+. +.++. +|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~---aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRG---SDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCC---CCEEEEeCC
Confidence 69999999999999999998888 799999998877643322111 00 1134444555 34444 999999976
Q ss_pred CCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 83 AGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 83 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.+. .+++++..+.+.. ++.++|..||
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN 117 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN 117 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 653 1445556666654 7777777877
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=81.13 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=66.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|+|||+|.||..++..|...|. +|+++||++++.+++.+.... ......++.+++.. +|+||.++|.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~~---aDvVi~at~~~~ 239 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 239 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhcC---CCEEEEccCCCC
Confidence 4579999999999999999999998 899999999988666654321 11122456666666 999999998765
Q ss_pred hHH--HHHHH-HHh-cccCCCEEEecCC
Q 011931 86 PVD--ETIKT-LSA-YMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~--~vl~~-l~~-~l~~g~iiId~st 109 (474)
.+. ..+.. +.+ .-.++.+++|.+.
T Consensus 240 ~~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 240 PVIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred ceecHHHHHHHHHhccCCCCEEEEEccC
Confidence 432 22332 211 1124557777764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.4e-05 Score=75.18 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=64.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+||+|||+|.+|.+++..|+..+. +|.++|+++++++.......+.. ..+++...+..+..+. +|+||++.+.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~---aDvVii~ag~ 82 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKD---ADLVVITAGA 82 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTT---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEECCCC
Confidence 799999999999999999998886 89999999988775433221100 0012222233444444 9999999876
Q ss_pred Ch---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. .++++.+.+... .+..+|+..||-
T Consensus 83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP 123 (318)
T 1ez4_A 83 PQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (318)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCc
Confidence 52 122333444444 577777777663
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=80.52 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=67.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc----ccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF----GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~----~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+.... .+. ...++++++.. +|+||.+++
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~---~DvVi~~~g 238 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQH---ADLLIGAVL 238 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHH---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhC---CCEEEECCC
Confidence 3689999999999999999999999999999999988776653311 110 12234556666 999999998
Q ss_pred CCh-hHHHH-HHHHHhcccCCCEEEecCCC
Q 011931 83 AGA-PVDET-IKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~~-~v~~v-l~~l~~~l~~g~iiId~st~ 110 (474)
.+. ....+ .....+.++++.+|||.+..
T Consensus 239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 239 VPGAKAPKLVTRDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp -------CCSCHHHHTTSCTTCEEEECC--
T ss_pred CCccccchhHHHHHHHhhcCCCEEEEEecC
Confidence 642 11111 24556778889999999853
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=9.7e-06 Score=82.49 Aligned_cols=93 Identities=11% Similarity=0.180 Sum_probs=66.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-------------------------C
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-------------------------R 62 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-------------------------~ 62 (474)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+.. .... .
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 247 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAE-----FLELDFKEEAGSGDGYAKVMSDAFIKAEME 247 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCE-----ECCC--------CCHHHHHHSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCE-----EEEecccccccccccchhhccHHHHHHHHH
Confidence 579999999999999999999999999999999988776544321 1100 0
Q ss_pred CHHHHHhhcCCCcEEEEe--cCCChhHHHHH-HHHHhcccCCCEEEecCC
Q 011931 63 DPESFVNSIQKPRVIIML--VKAGAPVDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 63 s~~e~~~~l~~~dvIil~--vp~~~~v~~vl-~~l~~~l~~g~iiId~st 109 (474)
++++++.. +|+||.+ +|... ...++ .+.+..+++|.+|||++.
T Consensus 248 ~l~e~~~~---aDvVI~~~~~pg~~-ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 248 LFAAQAKE---VDIIVTTALIPGKP-APKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHHHH---CSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHHHhCC---CCEEEECCccCCCC-CCeeeCHHHHhcCCCCcEEEEEcC
Confidence 24555666 9999999 44211 11112 344566889999999985
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=79.42 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=76.3
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++||||||+|.||.. .+..|.+. +++|. ++|+++++.. +... ....+++++++++. .+.|+|++|+|
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp 74 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK---ERYP-----QASIVRSFKELTED-PEIDLIVVNTP 74 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG---TTCT-----TSEEESCSHHHHTC-TTCCEEEECSC
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---HhCC-----CCceECCHHHHhcC-CCCCEEEEeCC
Confidence 3468999999999997 67777665 67775 8899987632 2111 25678899999874 44799999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~v 130 (474)
+....+.+.. .+..|. ++++-- +......+++.+..++.|+.+.
T Consensus 75 ~~~H~~~~~~----al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 75 DNTHYEYAGM----ALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp GGGHHHHHHH----HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHH----HHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9765554433 334555 445432 3445667777777777776543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.5e-05 Score=74.70 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=66.3
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
++.+||+|||+|.+|.+++..|+..+. +|.++|+++++++.......+.. ..++....+..+..+. +|+||++
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~ 83 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVIT 83 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEc
Confidence 345799999999999999999998886 89999999988765443221100 0012232344445555 9999999
Q ss_pred cCCChh---------------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAGAP---------------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+.+.. ++++.+.+..+ .+..+|+..||-
T Consensus 84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP 127 (326)
T 2zqz_A 84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 876521 22233444444 477777777663
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-05 Score=75.22 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=62.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+ .. ..++..+ +..+.++. +|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~-~~~~a~~~---aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT-NDYGPTED---SDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE-SSSGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC-CCHHHhCC---CCEEEEC
Confidence 689999999999999999999887 999999999876533211110 00 0012223 33444444 9999999
Q ss_pred cCCChh---------------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAGAP---------------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+.+.. ++++...+... .|..+++..||-
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNP 120 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANP 120 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCc
Confidence 865421 22222344443 577888888874
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.9e-05 Score=76.61 Aligned_cols=110 Identities=16% Similarity=0.053 Sum_probs=75.2
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~ 83 (474)
.+||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +.. . ++..+.+++|+.+ . +|++++++|+
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~~--~---G~~vy~sl~el~~~~~---~D~viI~tP~ 74 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TTH--L---GLPVFNTVREAVAATG---ATASVIYVPA 74 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE--T---TEEEESSHHHHHHHHC---CCEEEECCCG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---cee--C---CeeccCCHHHHhhcCC---CCEEEEecCH
Confidence 468999998 99999999999998998 44455543210 000 1 3677889999987 5 9999999999
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+.+++.+.... .. ..+|..+...+ .+.+++.+..++.|+.+++
T Consensus 75 ~-~~~~~~~ea~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG 120 (288)
T 2nu8_A 75 P-FCKDSILEAIDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 120 (288)
T ss_dssp G-GHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred H-HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 6 556666555442 11 34444555443 3455677777778988774
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-05 Score=78.95 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=78.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCC---HHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRD---PESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s---~~e~~~~l~~~dvIil~ 80 (474)
+++|.|+|+|.+|+.++..|++. |++|+++||++++++++.+... ..... ..+ +.++++. +|+||.|
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~----~~~~~~D~~d~~~l~~~l~~---~DvVIn~ 95 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSG----SKAISLDVTDDSALDKVLAD---NDVVISL 95 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGT----CEEEECCTTCHHHHHHHHHT---SSEEEEC
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcC----CcEEEEecCCHHHHHHHHcC---CCEEEEC
Confidence 46799999999999999999998 7899999999999888765411 00101 122 3344454 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+|.... ..+.. ..+.+|..++|.+...+ .+..+.+..++.|+.+++
T Consensus 96 tp~~~~-~~v~~---a~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 96 IPYTFH-PNVVK---SAIRTKTDVVTSSYISP-ALRELEPEIVKAGITVMN 141 (467)
T ss_dssp SCGGGH-HHHHH---HHHHHTCEEEECSCCCH-HHHHHHHHHHHHTCEEEC
T ss_pred Cchhhh-HHHHH---HHHhcCCEEEEeecCCH-HHHHHHHHHHHcCCEEEe
Confidence 997532 23332 23456888999866444 345666666777876654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.91 E-value=6.1e-05 Score=77.75 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=76.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc----ccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF----GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~----~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+++|.|+|+|.+|+.++..|++.|++|+++||++++.+++.+... ++. -..+.+++.+.++++|+||.++|
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~-----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCT-----TEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcC-----CceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 457999999999999999999999999999999988877654321 011 11233333222334999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
..... .+.. ..+.+|..++|.+...+ .+..+.+..++.|+.++.
T Consensus 78 ~~~~~-~i~~---a~l~~g~~vvd~~~~~~-~~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 78 YTFHA-TVIK---SAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 121 (450)
T ss_dssp --CHH-HHHH---HHHHHTCEEEESSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred cccch-HHHH---HHHhCCCeEEEeecccH-HHHHHHHHHHHCCCeEEe
Confidence 75332 2222 23456788888866554 445666777778887654
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.9e-05 Score=76.65 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=77.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC---------CCcEE-EEeCChHHHH-----H-HHHhhhhcCCCCccccC--CHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK---------GFPIS-VYNRTTSKVD-----E-TVERAKKEGDLPLFGFR--DPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~---------G~~V~-v~dr~~~~~~-----~-l~~~~~~~~~~~~~~~~--s~~e~~ 68 (474)
|+||||||+|.||+.++..|.+. +.+|. ++|+++++.+ + +...... ...++ ++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~-----~~~~~~~d~~~ll 76 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET-----GMLRDDAKAIEVV 76 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH-----SSCSBCCCHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC-----ccccCCCCHHHHh
Confidence 67999999999999999999875 45555 7788865422 1 2111111 12344 899988
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
+. ...|+|+.|+|+.....+..+.+...+..|..|+..+..... ...++.+..+++|+.|+ .+.+.++
T Consensus 77 ~~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g 146 (327)
T 3do5_A 77 RS-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGA 146 (327)
T ss_dssp HH-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTT
T ss_pred cC-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeec
Confidence 75 347999999998643111334445667889988876553222 23445555567787654 4444443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.7e-05 Score=76.25 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=76.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..++.|+|+|.+|++++..|++.|. +|+++||++++.+++.+.... + ++.. .+.+++.. ..+|+||.++|.+.
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~-~~~~~l~~--~~~DivInaTp~gm 193 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRI-SRYEALEG--QSFDIVVNATSASL 193 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEE-ECSGGGTT--CCCSEEEECSSGGG
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeE-eeHHHhcc--cCCCEEEECCCCCC
Confidence 3579999999999999999999996 999999999999988876421 0 1121 23333321 34999999999753
Q ss_pred hHHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 86 PVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 86 ~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.-+. .+. ...+.++.+|+|....+ ..|. +.+..+++|..
T Consensus 194 ~~~~~~i~--~~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~G~~ 233 (272)
T 3pwz_A 194 TADLPPLP--ADVLGEAALAYELAYGK-GLTP-FLRLAREQGQA 233 (272)
T ss_dssp GTCCCCCC--GGGGTTCSEEEESSCSC-CSCH-HHHHHHHHSCC
T ss_pred CCCCCCCC--HHHhCcCCEEEEeecCC-CCCH-HHHHHHHCCCC
Confidence 2110 010 13467899999998764 3443 44555667765
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.1e-05 Score=74.90 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=78.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcC-CCCccccC--CHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEG-DLPLFGFR--DPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~-~~~~~~~~--s~~e~~~~l~~~dvIil~vp 82 (474)
..++.|+|+|.+|++++..|++.|. +|+++||++++.+++.+...... ...+...+ ++.+.+.. +|+||-++|
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp 203 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATP 203 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCC
Confidence 3579999999999999999999998 69999999999888776532110 00122322 66677777 999999998
Q ss_pred CChhHHH--HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 83 AGAPVDE--TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 83 ~~~~v~~--vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.+-.-.. .+. ...+.++.+|+|..-.+.. | .+.+..+++|...+
T Consensus 204 ~Gm~~~~~~pi~--~~~l~~~~~v~DlvY~P~~-T-~ll~~A~~~G~~~~ 249 (283)
T 3jyo_A 204 MGMPAHPGTAFD--VSCLTKDHWVGDVVYMPIE-T-ELLKAARALGCETL 249 (283)
T ss_dssp TTSTTSCSCSSC--GGGCCTTCEEEECCCSSSS-C-HHHHHHHHHTCCEE
T ss_pred CCCCCCCCCCCC--HHHhCCCCEEEEecCCCCC-C-HHHHHHHHCcCeEe
Confidence 6521100 011 2347788999998775433 3 23344456676544
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=78.02 Aligned_cols=87 Identities=16% Similarity=0.401 Sum_probs=62.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||+|||+|+||+.++..+.+. +.++ .++|+++++ .+. . ++..++++++++.. +|+|++|+|+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~--~------gv~~~~d~~~ll~~---~DvViiatp~~ 69 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK--T------PVFDVADVDKHADD---VDVLFLCMGSA 69 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS--S------CEEEGGGGGGTTTT---CSEEEECSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc--C------CCceeCCHHHHhcC---CCEEEEcCCcH
Confidence 46899999999999999999876 5665 588998655 221 1 24556677776644 99999999987
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...+.+ ...++.|..+++....
T Consensus 70 ~h~~~~----~~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 70 TDIPEQ----APKFAQFACTVDTYDN 91 (320)
T ss_dssp THHHHH----HHHHTTTSEEECCCCC
T ss_pred HHHHHH----HHHHHCCCEEEECCCC
Confidence 544433 3445668878776654
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.4e-05 Score=75.56 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=74.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--------CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--------FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--------~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
-||||||+|.||...+..+.+.. .+| .++|+++++++++.++... ...+++.+++++. ++.|+|+
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-----~~~~~d~~~ll~~-~~iDaV~ 80 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-----STTETDWRTLLER-DDVQLVD 80 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESCHHHHTTC-TTCSEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEE
Confidence 37999999999999888776532 244 4889999999988876531 2467899999865 4479999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCE-EEecC-CCCchhHHHHHHH---HHHcCCe
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDC-IIDGG-NEWYENTERREKA---MAELGLL 128 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~i-iId~s-t~~~~~~~~~~~~---l~~~g~~ 128 (474)
+|+|+..+.+.++.. +..|+- ++.-= +....+.+++.+. .++.|+.
T Consensus 81 I~tP~~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~ 131 (390)
T 4h3v_A 81 VCTPGDSHAEIAIAA----LEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIR 131 (390)
T ss_dssp ECSCGGGHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCC
T ss_pred EeCChHHHHHHHHHH----HHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCc
Confidence 999998766655443 335554 44421 2223455666333 4445543
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=72.93 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred CCcCcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEE
Q 011931 5 KQLTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 5 ~~~~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..++||+|||+ |.+|.++|..++..|. +|.++|+++++++.......+.. ..++..++++.+.++. +|+||+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d---ADvVvi 82 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD---AKYIVS 82 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT---EEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC---CCEEEE
Confidence 45679999997 9999999999999984 89999999887665322111100 0134555677777776 999999
Q ss_pred ecCC
Q 011931 80 LVKA 83 (474)
Q Consensus 80 ~vp~ 83 (474)
+...
T Consensus 83 taG~ 86 (343)
T 3fi9_A 83 SGGA 86 (343)
T ss_dssp CCC-
T ss_pred ccCC
Confidence 9743
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.86 E-value=7.1e-05 Score=73.41 Aligned_cols=99 Identities=10% Similarity=0.199 Sum_probs=64.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|||+|||+|.+|.+++..|+..+ .+|.++|+++++++.......+.. ..+.....+..+..+. +|+||++.+.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~---aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEG---ARAVVLAAGV 77 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT---EEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCC---CCEEEECCCC
Confidence 68999999999999999999887 589999999988775433322100 0012222223444444 9999999866
Q ss_pred Chh---------------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAP---------------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.. ++++.+.+... .+..+|+..||-
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP 118 (310)
T 2xxj_A 78 AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNP 118 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCc
Confidence 532 23333444444 567778777663
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.6e-05 Score=73.56 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC--CCccccCCHHHHHhhcCCCcEEEE
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD--LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~--~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
++..+||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+... .++...++..+..+. +|+||+
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~---aDiVvi 82 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKD---ADLVVI 82 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT---CSEEEE
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcC---CCEEEE
Confidence 4556799999999999999999999987 899999999887754432211000 012333333444444 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...+. .++++.+.+..+ .|..+++..||-
T Consensus 83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNP 127 (326)
T 3vku_A 83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CCCCC----------------CHHHHHHHHHTT-TCCSEEEECSSS
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCc
Confidence 875432 122333444443 467788888773
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=7.1e-05 Score=77.07 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=54.5
Q ss_pred cCcEEEEcccHh-HHHHHHHHHHC-----CCcEEEEeCCh--HHHHHHHH---hhh-hcC-CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTT--SKVDETVE---RAK-KEG-DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~--~~~~~l~~---~~~-~~~-~~~~~~~~s~~e~~~~l~~ 73 (474)
.+||+|||+|.+ |.+++..|+.+ +.+|.+||+++ ++++.... ... ..+ ..++..++++.++++.
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--- 83 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 83 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC---
Confidence 469999999999 88888888874 66899999999 87665321 110 000 1135556777777777
Q ss_pred CcEEEEecCCC
Q 011931 74 PRVIIMLVKAG 84 (474)
Q Consensus 74 ~dvIil~vp~~ 84 (474)
+|+||++++.+
T Consensus 84 AD~VVitagv~ 94 (450)
T 1s6y_A 84 ADFVTTQFRVG 94 (450)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCCCC
Confidence 99999999975
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.7e-05 Score=72.32 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=80.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.++++++|+++|.+.++.|+.++|++.+.++. ++|.+++.++|+.+. .+|+.++........++..+ .
T Consensus 166 ~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~------Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~p-~--- 234 (297)
T 4gbj_A 166 DPGAANVIKLAGNFMIACSLEMMGEAFTMAEKN------GISRQSIYEMLTSTL-FAAPIFQNYGKLVASNTYEP-V--- 234 (297)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTTT-TCSHHHHHHHHHHHHTCCCS-C---
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhc-ccCchhhccCccccCCCCCC-c---
Confidence 357899999999999999999999999998753 499999999999885 57888887655544432211 0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
-|.-. -...+++-+++.|-+.|+|+|....+.++|..
T Consensus 235 -~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 235 -AFRFP--LGLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp -SSBHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred -cchhH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 11111 12345688899999999999999988886653
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.2e-05 Score=77.27 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcCCCCccc-------cCCHHHHHhhcCCCcE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEGDLPLFG-------FRDPESFVNSIQKPRV 76 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-------~~s~~e~~~~l~~~dv 76 (474)
|+||+|||+|.+|+.++..|++.| .+|.++||++++.+++.+.....+..++.. ..+++++++.. ++|+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQI 79 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCE
Confidence 468999999999999999999998 389999999999988876542200000111 12233444331 2799
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCch--------hHHHHHHHHHHcCCeEEe
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE--------NTERREKAMAELGLLYLG 131 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--------~~~~~~~~l~~~g~~~v~ 131 (474)
||.++|+.. ...+++. .+..|..++|++...+. ....+.+.+++.|+.++.
T Consensus 80 Vin~ag~~~-~~~v~~a---~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 80 VLNIALPYQ-DLTIMEA---CLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp EEECSCGGG-HHHHHHH---HHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred EEECCCccc-ChHHHHH---HHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 999988653 3334333 24467778887554332 112445555666766543
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=74.29 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=78.3
Q ss_pred cCcEEEEc-ccHhHHH-HH----HHHHHCC-CcE----------EEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHH
Q 011931 7 LTRIGLAG-LAVMGQN-LA----LNIAEKG-FPI----------SVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~-lA----~~L~~~G-~~V----------~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~ 68 (474)
.+|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+++.+... + ..++++++++
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~------~~~~~~~~~~ll 79 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFN------IARWTTDLDAAL 79 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTT------CCCEESCHHHHH
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhC------CCcccCCHHHHh
Confidence 46899999 9999998 66 6666554 222 499999999998877542 3 3678999998
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeE
Q 011931 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~ 129 (474)
+. ...|+|++|+|+....+-+. ..++.|+.|+--- .......+++.+..++.|+.+
T Consensus 80 ~~-~~iD~V~i~tp~~~h~~~~~----~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 80 AD-KNDTMFFDAATTQARPGLLT----QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKH 137 (383)
T ss_dssp HC-SSCCEEEECSCSSSSHHHHH----HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred cC-CCCCEEEECCCchHHHHHHH----HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 75 44799999999976654433 3345666555321 234456777777777777644
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=74.53 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=74.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhh-hh------------------cCCCCccccCCHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERA-KK------------------EGDLPLFGFRDPE 65 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~-~~------------------~~~~~~~~~~s~~ 65 (474)
+.||||||+|.||+.++..+.+. +.+|. ++|+++++.+++.+.. .. .+ ....+++.+
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g--~~~v~~D~e 100 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAG--KIAVTDDND 100 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTT--CEEEESCHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccC--CceEECCHH
Confidence 45899999999999999888754 55654 8899999988876532 10 00 134678999
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchh---HHHHHHHHHHcCCeE
Q 011931 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---TERREKAMAELGLLY 129 (474)
Q Consensus 66 e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---~~~~~~~l~~~g~~~ 129 (474)
++++. ...|+|++++|++..-. +-....++.|+-|+.... +.+ ..++.+..++.|+.|
T Consensus 101 eLL~d-~dIDaVviaTp~p~~H~---e~a~~AL~AGKHVv~~nk--~l~~~eg~eL~~~A~e~Gvvl 161 (446)
T 3upl_A 101 LILSN-PLIDVIIDATGIPEVGA---ETGIAAIRNGKHLVMMNV--EADVTIGPYLKAQADKQGVIY 161 (446)
T ss_dssp HHHTC-TTCCEEEECSCCHHHHH---HHHHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCE
T ss_pred HHhcC-CCCCEEEEcCCChHHHH---HHHHHHHHcCCcEEecCc--ccCHHHHHHHHHHHHHhCCee
Confidence 99874 34799999998752212 223345667888875432 222 234444445556544
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.7e-05 Score=73.85 Aligned_cols=113 Identities=12% Similarity=-0.000 Sum_probs=76.3
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--------hcCCCcE
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--------SIQKPRV 76 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--------~l~~~dv 76 (474)
|+||||||+ |.||...+..|.+.+.++. ++|+++++. .+.+... ....+++.+++.+ .-+..|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISP-----QSEFFTEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence 679999999 7999999999998888765 889998762 2222211 2567889999873 1135899
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEE-EecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCI-IDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~ii-Id~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
|++++|+....+-+... +..|+-| ++-- +..+.+.+++.+..+++|+.+
T Consensus 77 V~I~tP~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 127 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAG----LRLGCDVICEKPLVPTPEMLDQLAVIERETDKRL 127 (318)
T ss_dssp EEECSCGGGHHHHHHHH----HHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCE
T ss_pred EEECCCcHHHHHHHHHH----HHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEE
Confidence 99999997655444333 3345544 4421 334466777777777777654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00015 Score=71.65 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=67.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----CCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..+||+|||+|.||.++|..|+.+|+ +|.++|+++++++.......+. ....+..+.++++ ++. +|+||+
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~~---aDiVvi 93 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TAN---SKLVII 93 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GTT---EEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hCC---CCEEEE
Confidence 45799999999999999999999997 8999999988776543322110 0001233445554 344 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...+. .++++.+.+..+ .|+.+++..||-
T Consensus 94 ~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 138 (331)
T 4aj2_A 94 TAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNP 138 (331)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 874431 133333455554 577888888874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.79 E-value=4.8e-05 Score=76.29 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=68.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|+|+|.+|..++..+...|.+|+++||++++.+.+.+.+.. .+ ....+.+++.+.+..+|+||.+++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 589999999999999999999999999999999998888765532 11 1112233332223349999999976431
Q ss_pred H-HH-HHHHHHhcccCCCEEEecCCC
Q 011931 87 V-DE-TIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v-~~-vl~~l~~~l~~g~iiId~st~ 110 (474)
. .. +.....+.++++.+|+|.+..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 0 00 123344567788899988764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.2e-05 Score=78.21 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=64.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc--ccC---------------C------
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF--GFR---------------D------ 63 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~--~~~---------------s------ 63 (474)
-.+|+|||+|.+|...+..+...|.+|+++|+++++.+.+.+.+.. .. ... +
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~-----~~~i~~~~~~~~~~~~~~~~~~s~~~~~~ 246 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRKK 246 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------CC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-----EEeecccccccccccccchhhcCHHHHhh
Confidence 3579999999999999999999999999999999887776553321 11 000 0
Q ss_pred ----HHHHHhhcCCCcEEEEecCCC-hhHHHHH-HHHHhcccCCCEEEecCC
Q 011931 64 ----PESFVNSIQKPRVIIMLVKAG-APVDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 64 ----~~e~~~~l~~~dvIil~vp~~-~~v~~vl-~~l~~~l~~g~iiId~st 109 (474)
+.+++.. +|+||.+++.+ .....++ .+....+++|.+|||.+.
T Consensus 247 ~~~~l~~~~~~---aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 247 QAEAVLKELVK---TDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHHHHHHHTT---CSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred hHHHHHHHhCC---CCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEec
Confidence 3344444 99999988221 0111112 344566788999999874
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6e-05 Score=73.35 Aligned_cols=116 Identities=10% Similarity=0.073 Sum_probs=77.8
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHH----CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAE----KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~----~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~d 75 (474)
|....+++||||||+|.||...+..|.+ .++++. ++|+++. .+.. ++. +.+++++++. ...|
T Consensus 1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~~------g~~-~~~~~ell~~-~~vD 67 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSLD------EVR-QISLEDALRS-QEID 67 (294)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEET------TEE-BCCHHHHHHC-SSEE
T ss_pred CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHHc------CCC-CCCHHHHhcC-CCCC
Confidence 5555667899999999999999988864 356655 7788641 1111 233 4789999873 2379
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
+|++++|+..+.+.++. .++.|. ++++- -+....+.+++.+..+++|+.+..+.
T Consensus 68 ~V~i~tp~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 68 VAYICSESSSHEDYIRQ----FLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp EEEECSCGGGHHHHHHH----HHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEeCCcHhHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 99999998765544433 344566 55653 34455677778887777887655443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=6.7e-05 Score=73.63 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=76.5
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-------hcCCCcEE
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-------SIQKPRVI 77 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~-------~l~~~dvI 77 (474)
|+||||||+ |.||...+..+.+.+.+|. ++|+++++. .+.+... ....+++.+++.+ .-++.|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFP-----EAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 679999999 7899999999998888765 889998763 2222211 2567889999872 11458999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
++|+|+....+-+.. .++.|+-|+ +- -+......+++.+..+++|+.+
T Consensus 77 ~I~tP~~~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 126 (312)
T 3o9z_A 77 SIASPNHLHYPQIRM----ALRLGANALSEKPLVLWPEEIARLKELEARTGRRV 126 (312)
T ss_dssp EECSCGGGHHHHHHH----HHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred EECCCchhhHHHHHH----HHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEE
Confidence 999999755443333 344565444 32 1234456777777777777654
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.74 E-value=6.6e-05 Score=70.24 Aligned_cols=111 Identities=6% Similarity=0.021 Sum_probs=71.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHh-hcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVN-SIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~-~l~~~dvIil~vp~~ 84 (474)
.++|.|+|+|.+|..++..|.+.|+ |+++|+++++++.+. .+.. -+.. .++.+.+.+ .++++|.||++++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~----~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCE----EEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCe----EEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 4579999999999999999999999 999999999887766 3211 0111 123333322 256799999999876
Q ss_pred hhHHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
.....+...+..+.++ .+|+...+.. .. +.+...|+..+
T Consensus 83 -~~n~~~~~~a~~~~~~~~iia~~~~~~--~~----~~l~~~G~~~v 122 (234)
T 2aef_A 83 -SETIHCILGIRKIDESVRIIAEAERYE--NI----EQLRMAGADQV 122 (234)
T ss_dssp -HHHHHHHHHHHHHCSSSEEEEECSSGG--GH----HHHHHHTCSEE
T ss_pred -HHHHHHHHHHHHHCCCCeEEEEECCHh--HH----HHHHHCCCCEE
Confidence 3333333444455665 6666665532 22 23334566554
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00019 Score=70.44 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=62.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC-CCCccc---cCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG-DLPLFG---FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~-~~~~~~---~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+ |.+|.+++..|+..| .+|.++|+++.+ .......+.. ..++.. +++++++.+. +|+||++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~--~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~---aDvVvi~ 75 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYLGPEQLPDCLKG---CDVVVIP 75 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH--HHHHHHTTSSSSCEEEEEESGGGHHHHHTT---CSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccH--HHHHHHhccCcCceEEEecCCCCHHHHhCC---CCEEEEC
Confidence 58999998 999999999999988 699999998722 1111111100 001232 2457776776 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
...+. .++++.+.+.+.. +..+|+..||
T Consensus 76 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sN 118 (314)
T 1mld_A 76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISN 118 (314)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS
T ss_pred CCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC
Confidence 85432 2344445555544 6667777766
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=72.53 Aligned_cols=107 Identities=8% Similarity=0.118 Sum_probs=73.2
Q ss_pred cCcEEEEcccHhHH-HHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQ-NLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||. ..+..|.+. +++|. ++|+++++ . ++..+++++++++.....|+|++|+|+
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~-------g~~~~~~~~~ll~~~~~vD~V~i~tp~ 91 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------E-------GVNSYTTIEAMLDAEPSIDAVSLCMPP 91 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------T-------TSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------c-------CCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence 35899999999998 788888875 66765 78998653 1 256788999998753458999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~v 130 (474)
....+-+. ..++.|.-|+--- +......+++.+..++.|+.+.
T Consensus 92 ~~H~~~~~----~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 136 (330)
T 4ew6_A 92 QYRYEAAY----KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLF 136 (330)
T ss_dssp HHHHHHHH----HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHH----HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 64433332 3344566554321 2334566677777777776544
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=6.3e-05 Score=72.98 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=76.1
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~ 83 (474)
.+||+|+|+ |.||..+++++.+.|++ .++..+|.+..+ .. . ++.++.+++|+.+ . +|++++++|+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g~---~i--~---G~~vy~sl~el~~~~~---~Dv~Ii~vp~ 74 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGGM---EV--L---GVPVYDTVKEAVAHHE---VDASIIFVPA 74 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC---EE--T---TEEEESSHHHHHHHSC---CSEEEECCCH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCCc---eE--C---CEEeeCCHHHHhhcCC---CCEEEEecCH
Confidence 468999998 99999999999999998 444444432100 00 1 3678889999987 6 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v~~ 132 (474)
. .+.++++++... .. ..+|..+++.+. +..++.+..++.|+.++..
T Consensus 75 ~-~~~~~~~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigP 121 (288)
T 1oi7_A 75 P-AAADAALEAAHA-GI-PLIVLITEGIPTLDMVRAVEEIKALGSRLIGG 121 (288)
T ss_dssp H-HHHHHHHHHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEES
T ss_pred H-HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 5 666677665542 12 224445555544 3456666677788887753
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.69 E-value=8.6e-05 Score=73.20 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=76.7
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHC-------CCcEE-EEeCChHH------HHHHHHhhhhcCCCCcc-ccCCHHHHHhh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEK-------GFPIS-VYNRTTSK------VDETVERAKKEGDLPLF-GFRDPESFVNS 70 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~-------G~~V~-v~dr~~~~------~~~l~~~~~~~~~~~~~-~~~s~~e~~~~ 70 (474)
++.||+|||+|.||+.++..|.++ +.+|. ++|++++. .+++.+.....+ .+. ...+..+++..
T Consensus 3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g--~~~~~~~d~~e~l~~ 80 (325)
T 3ing_A 3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTG--RISDRAFSGPEDLMG 80 (325)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHS--CSCSSBCCSGGGGTT
T ss_pred ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcC--CCCcccCCHHHHhcC
Confidence 456899999999999999999874 34554 66887542 112221111000 011 01156666654
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011931 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYL-GMGVSGG 137 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~v-~~pvsgg 137 (474)
...|+|+.|+|+....+...+.+...+..|..||....... ....++.+..+++|+.|. .+.+.+|
T Consensus 81 -~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~g 148 (325)
T 3ing_A 81 -EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGG 148 (325)
T ss_dssp -SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeeccc
Confidence 34899999999763334444555666778999987765322 223345555566777553 4555444
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=69.90 Aligned_cols=110 Identities=18% Similarity=0.041 Sum_probs=74.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..++.|+|+|.+|++++..|.+.|. +|+++||++++.+++.+.. . ..+.+++.+ + .+|+||.++|.+-
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~-~~~~~~l~~-l-~~DivInaTp~Gm 190 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------K-VISYDELSN-L-KGDVIINCTPKGM 190 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------E-EEEHHHHTT-C-CCSEEEECSSTTS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------C-cccHHHHHh-c-cCCEEEECCccCc
Confidence 3579999999999999999999998 8999999999988776432 1 123333333 3 4999999998752
Q ss_pred h--HHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 P--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+. .+ -...++++.+|+|..-.+.. | .+.+..+++|...++
T Consensus 191 ~~~~~~~pi--~~~~l~~~~~v~DlvY~P~~-T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 191 YPKEGESPV--DKEVVAKFSSAVDLIYNPVE-T-LFLKYARESGVKAVN 235 (282)
T ss_dssp TTSTTCCSS--CHHHHTTCSEEEESCCSSSS-C-HHHHHHHHTTCEEEC
T ss_pred cCCCccCCC--CHHHcCCCCEEEEEeeCCCC-C-HHHHHHHHCcCeEeC
Confidence 1 010 01 01235688999998765433 3 344455667776553
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0002 Score=70.26 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHHhhhhcCCCCc--cccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT---TSKVDETVERAKKEGDLPL--FGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~~~~~~~~~~--~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.++.|+|+|.+|++++..|++.|. +|++++|+ .++.+++.+......+..+ ....+.+++.+.+..+|+||-++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 479999999999999999999998 89999999 8888887765321100001 12223333322222399999999
Q ss_pred CCChhHH--H-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 82 KAGAPVD--E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 82 p~~~~v~--~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|.+-.-. . .+. ....++++.+|+|..-.+..+ .+.+..+++|...++
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~P~~T--~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYKPTKT--RLLEIAEEQGCQTLN 284 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEeC
Confidence 9652100 0 010 123467889999987765433 344455667765543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.66 E-value=7.6e-05 Score=73.96 Aligned_cols=115 Identities=7% Similarity=0.062 Sum_probs=73.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|+||||||+|.+|...+..| ..+.+|. ++|+++ ++.+++.+..... +.+...+++++++++. .+.|+|++|+|+.
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~-~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEM-NIKPKKYNNWWEMLEK-EKPDILVINTVFS 78 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTT-TCCCEECSSHHHHHHH-HCCSEEEECSSHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHc-CCCCcccCCHHHHhcC-CCCCEEEEeCCcc
Confidence 57999999999999888777 6677776 789987 4444444322110 0013578899999874 3479999999987
Q ss_pred hhHHHHHHHHHhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCe
Q 011931 85 APVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~ 128 (474)
...+-++. .++.|.-|+ +- -+....+.+++.+..++.|..
T Consensus 79 ~H~~~~~~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 79 LNGKILLE----ALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHH----HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHH----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 55443333 344565444 32 122335666777777766654
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=9.1e-05 Score=72.30 Aligned_cols=108 Identities=19% Similarity=0.049 Sum_probs=77.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCc--
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLL-- 387 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll-- 387 (474)
+.++++++|+++|.+.++.|+.++|++.+.++. ++|.+.+.++|+.+. -+|+.++........ ..+..
T Consensus 165 ~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~p~~~~---~~~~~~~ 234 (300)
T 3obb_A 165 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGV---MENAPAS 234 (300)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTT---STTSGGG
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhccccch---hhhcccc
Confidence 458899999999999999999999999998763 499999999999875 467766532110000 00001
Q ss_pred --cChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 388 --VDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 388 --~~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
.++.|.-. -...+++.+++.|.+.|+|+|..+.+..+|..
T Consensus 235 ~~~~~~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~ 276 (300)
T 3obb_A 235 RDYSGGFMAQ--LMAKDLGLAQEAAQASASSTPMGSLALSLYRL 276 (300)
T ss_dssp GTTCSSSBHH--HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred ccCCccchHH--HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 01222221 22446788999999999999999999887654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=71.24 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=60.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCC--CcEEEEeCChHHHH--HHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEE
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVI 77 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~~~~~~~~---~~s~~e~~~~l~~~dvI 77 (474)
++|||+||| +|.+|.+++..|+..| ++|.++|++++... ++..... . .++.. +++++++++. +|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~-~--~~v~~~~~t~d~~~al~g---aDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDT-G--AVVRGFLGQQQLEAALTG---MDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCS-S--CEEEEEESHHHHHHHHTT---CSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccc-c--ceEEEEeCCCCHHHHcCC---CCEE
Confidence 457999999 8999999999999998 79999999876211 1221110 0 01222 2345566665 9999
Q ss_pred EEecCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 78 IMLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 78 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
|++.+.+. .++++++.+...- +..+|+..||
T Consensus 81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SN 126 (326)
T 1smk_A 81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISN 126 (326)
T ss_dssp EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCS
T ss_pred EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC
Confidence 99986432 1333444444433 5667766655
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0003 Score=72.07 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=76.1
Q ss_pred CcEEEEcccHhHHHHHHHHHH----------CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLALNIAE----------KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~----------~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
.+|||||+|.||+.++..|.+ .+.+|. ++|+++++.+.+.. ....+++++++++. ...|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------~~~~~~d~~ell~d-~diDv 81 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------GLPLTTNPFDVVDD-PEIDI 81 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------TCCEESCTHHHHTC-TTCCE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------cCcccCCHHHHhcC-CCCCE
Confidence 479999999999999987764 244554 78999988766531 13567899999874 34799
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeE-EecCCCCC
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLY-LGMGVSGG 137 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~-v~~pvsgg 137 (474)
|++++|+.....+.+ ...+..|..|+...... .....++.+..+++|+.+ +.+.+.++
T Consensus 82 Vve~tp~~~~h~~~~---~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 82 VVELIGGLEPARELV---MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp EEECCCSSTTHHHHH---HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred EEEcCCCchHHHHHH---HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 999999632333333 34466788887543310 112334555556678776 34545443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=70.98 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=76.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~ 84 (474)
.+|.|+|+ |.||..+++++.+.|++ .++..+|.+..+ .. .++.++.+++|+.+ . +|++++++|+.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~---~i-----~G~~vy~sl~el~~~~~---~Dv~ii~vp~~ 81 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQ---NV-----HGVPVFDTVKEAVKETD---ANASVIFVPAP 81 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTC---EE-----TTEEEESSHHHHHHHHC---CCEEEECCCHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCc---eE-----CCEeeeCCHHHHhhcCC---CCEEEEccCHH
Confidence 46888898 99999999999999998 666666653210 00 13678889999987 6 99999999985
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG 131 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v~ 131 (474)
.+.+++++.... .. ..+|..+++.+. +..++.+..++.|+.+++
T Consensus 82 -~~~~~v~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 126 (294)
T 2yv1_A 82 -FAKDAVFEAIDA-GI-ELIVVITEHIPVHDTMEFVNYAEDVGVKIIG 126 (294)
T ss_dssp -HHHHHHHHHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred -HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 666666665542 11 224445555543 345666777778888775
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=70.90 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC----CccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL----PLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
+++.|+|+|.+|.++|..|++.| +|+++||++++.+++.+.....+.. .+.. .+.. +.+.++|+||.+++.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~---~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLD---VDLDGVDIIINATPI 203 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTT---CCCTTCCEEEECSCT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHH---HhhCCCCEEEECCCC
Confidence 57999999999999999999999 9999999999888776543210000 0011 1222 223459999999987
Q ss_pred ChhH--HHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 84 GAPV--DET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 84 ~~~v--~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+..- +.. +. -...++++.+++|++.. |..+ .+.+..+++|..++
T Consensus 204 ~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 204 GMYPNIDVEPIV-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TCTTCCSSCCSS-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCC-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 5321 000 10 02356789999999875 4333 34455566676543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=70.61 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=65.2
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHC-CCcEE-EEeCChHHH-----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRTTSKV-----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~-----~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
+|+||+|+| +|.||+.+++.+.+. ++++. ++|++++.. .++.. .. .++..+++++++++. +|+|
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g--~~---~gv~v~~dl~~ll~~---~DVV 77 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQ---TGVALTDDIERVCAE---ADYL 77 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTT--CC---CSCBCBCCHHHHHHH---CSEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhC--CC---CCceecCCHHHHhcC---CCEE
Confidence 367999999 899999999998865 66766 479875321 01110 00 035667899998887 9999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
|-++++. .+.+.+.. .++.|.-+|..+|+...
T Consensus 78 IDfT~p~-a~~~~~~~---al~~G~~vVigTTG~s~ 109 (272)
T 4f3y_A 78 IDFTLPE-GTLVHLDA---ALRHDVKLVIGTTGFSE 109 (272)
T ss_dssp EECSCHH-HHHHHHHH---HHHHTCEEEECCCCCCH
T ss_pred EEcCCHH-HHHHHHHH---HHHcCCCEEEECCCCCH
Confidence 9998764 44444443 34467777777777643
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0002 Score=70.93 Aligned_cols=94 Identities=10% Similarity=0.135 Sum_probs=62.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhh-h-cCCC----------CccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAK-K-EGDL----------PLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~-~-~~~~----------~~~~~~s~~e~~~~l~ 72 (474)
|+||||+|+|.||+.+++.|.+. +.+|. ++|+++++...+.+... . .+.+ .+....+++++...
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 46999999999999999999876 34654 67888877776665321 0 0000 12345678888765
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEec
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDG 107 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~ 107 (474)
+|+|++|+|.....+.. . .+++.|..||..
T Consensus 80 -vDvV~~aTp~~~h~~~a-~---~~l~aGk~Vi~s 109 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNK-P---LYEKAGVKAIFQ 109 (334)
T ss_dssp -CSEEEECCSTTHHHHHH-H---HHHHHTCEEEEC
T ss_pred -CCEEEECCCccccHHHH-H---HHHHcCCceEee
Confidence 99999999987444333 2 334457777743
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00048 Score=66.77 Aligned_cols=98 Identities=11% Similarity=0.098 Sum_probs=62.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+|.+|.++|..|+.++. ++.+||+++++++-......+ .. ..++....+.+++ +. +|+||++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~-~~---aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-KG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGG-TT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHh-CC---CCEEEEe
Confidence 799999999999999999988875 899999998765433221111 00 0012334455443 33 9999998
Q ss_pred cCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...+ .. ++++.+++..+ .|+.+|+..||-
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNP 120 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCc
Confidence 7432 11 23333455554 467788888874
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00053 Score=68.15 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=72.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|+|+|+|++|..+|+.|.+.|.+|+++|+++++ .+..+.. +.+.. +.+++... .||+++-|-... .+
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~------ga~~v-~~~ell~~--~~DIliP~A~~~-~I 244 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVAL------GHTAV-ALEDVLST--PCDVFAPCAMGG-VI 244 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHT------TCEEC-CGGGGGGC--CCSEEEECSCSC-CB
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhc------CCEEe-ChHHhhcC--ccceecHhHHHh-hc
Confidence 57999999999999999999999999999999876 3333322 12222 45565541 399987553222 11
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+.++.++ .++|++.+|......+ ..+.+.++|+.++.
T Consensus 245 ~---~~~~~~lk-~~iVie~AN~p~t~~e-A~~~L~~~gIlv~P 283 (355)
T 1c1d_A 245 T---TEVARTLD-CSVVAGAANNVIADEA-ASDILHARGILYAP 283 (355)
T ss_dssp C---HHHHHHCC-CSEECCSCTTCBCSHH-HHHHHHHTTCEECC
T ss_pred C---HHHHhhCC-CCEEEECCCCCCCCHH-HHHHHHhCCEEEEC
Confidence 1 12233453 6899999988654323 35777888876653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=75.72 Aligned_cols=86 Identities=12% Similarity=0.218 Sum_probs=59.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~ 84 (474)
.|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++++.+...-. -+....+..+... .+++||++|.+++++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 47999999999999999999999999999999999999887653100 1222222223222 256699888777664
Q ss_pred hhHHHHHHHHHh
Q 011931 85 APVDETIKTLSA 96 (474)
Q Consensus 85 ~~v~~vl~~l~~ 96 (474)
.+.-+.-.++.
T Consensus 80 -e~Nl~~~~~Ak 90 (461)
T 4g65_A 80 -ETNMAACQVAF 90 (461)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 44433333333
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00021 Score=68.50 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=51.6
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+||+|.|+|+|.+|+.++..|+++|++|++.+|++++...+...+.. . ...++.++ + +.++|+||.+...
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE-----P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE-----E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe-----E-EEeccccc-c-cCCCCEEEECCCc
Confidence 456899999999999999999999999999999999887776543311 1 11222221 1 4559999998754
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0008 Score=66.43 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=64.6
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCC----hHHHHHHHHhhhhcC-CC--CccccCCHHHHHhh
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRT----TSKVDETVERAKKEG-DL--PLFGFRDPESFVNS 70 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~----~~~~~~l~~~~~~~~-~~--~~~~~~s~~e~~~~ 70 (474)
+.|||+|+|+ |.+|.+++..|+..|+ +|.++|++ +++++.......+.. .+ ++..+++..++++.
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 3469999997 9999999999999886 89999999 555543222111100 00 23344666776666
Q ss_pred cCCCcEEEEecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCC
Q 011931 71 IQKPRVIIMLVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 71 l~~~dvIil~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 109 (474)
+|+||++...+. . ++++++.+.....+..+||..||
T Consensus 84 ---aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 84 ---ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp ---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ---CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 999999875331 1 22333444443336668888886
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=4.1e-05 Score=70.87 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=51.1
Q ss_pred cCcEEEEcccHhHHHHHHH--HHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALN--IAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~--L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.++|+|||+|.+|..++.. +...|+++. ++|.++++....... .++...++++++++. .|+|++|+|+
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~eli~~---~D~ViIAvPs 155 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGG------VPVYNLDDLEQHVKD---ESVAILTVPA 155 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETT------EEEEEGGGHHHHCSS---CCEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcC------CeeechhhHHHHHHh---CCEEEEecCc
Confidence 3689999999999999994 445688766 779999876432211 123345667777765 5999999997
Q ss_pred ChhHHHHHHHHH
Q 011931 84 GAPVDETIKTLS 95 (474)
Q Consensus 84 ~~~v~~vl~~l~ 95 (474)
. ...++.+.+.
T Consensus 156 ~-~~~ei~~~l~ 166 (215)
T 2vt3_A 156 V-AAQSITDRLV 166 (215)
T ss_dssp H-HHHHHHHHHH
T ss_pred h-hHHHHHHHHH
Confidence 5 4445555544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00028 Score=72.79 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=69.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++++|+|+|.+|..+|+.|+..|.+|.++|+++.+..+....+ + ...+.+++... +|+|+.+......+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g-------~-dv~~lee~~~~---aDvVi~atG~~~vl 334 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEG-------L-QVLTLEDVVSE---ADIFVTTTGNKDII 334 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCGGGTTTT---CSEEEECSSCSCSB
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhC-------C-ccCCHHHHHHh---cCEEEeCCCChhhh
Confidence 4699999999999999999999999999999998877666543 2 23467777766 99999887654322
Q ss_pred HHHHHHHHhcccCCCEEEecCCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
. ......++++.+|++.+...
T Consensus 335 ~---~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 M---LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp C---HHHHTTSCTTEEEEESSSTT
T ss_pred h---HHHHHhcCCCeEEEEcCCCC
Confidence 2 33456788999999998753
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0002 Score=70.78 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=74.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC--------CCcEE-EEeCChHHHHH------HHHhhhhcCCCCcc-ccC---CHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK--------GFPIS-VYNRTTSKVDE------TVERAKKEGDLPLF-GFR---DPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~--------G~~V~-v~dr~~~~~~~------l~~~~~~~~~~~~~-~~~---s~~e~ 67 (474)
++||||||+|.||+.++..|.+. +.+|. ++|+++++.++ +.+..... .+. .++ +++++
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~l 82 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKG---SLDSLEYESISASEA 82 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTT---CGGGCCSEECCHHHH
T ss_pred EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccC---CcccccCCCCCHHHH
Confidence 36899999999999999998764 24554 77998765432 22211100 121 344 88888
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEE-ecCCCC
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYL-GMGVSG 136 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~v-~~pvsg 136 (474)
+ . ...|+|+.|+|+....+...+-+...|..|..|+...... .....++.+..+++|+.|. ++.+.+
T Consensus 83 l-~-~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~ 151 (331)
T 3c8m_A 83 L-A-RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAG 151 (331)
T ss_dssp H-H-SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSST
T ss_pred h-C-CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 8 4 3489999999984111122233445567888888654321 1223445555566776543 344443
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00044 Score=67.26 Aligned_cols=113 Identities=15% Similarity=0.057 Sum_probs=75.8
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|+|+ |.||..++++|.+.|++ .++..+|.+..+ .. . ++.++.+++|+.+....+|++++++|+.
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~---~i--~---G~~vy~sl~el~~~~~~~DvaIi~vp~~- 82 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGS---EV--H---GVPVYDSVKEALAEHPEINTSIVFVPAP- 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC---EE--T---TEEEESSHHHHHHHCTTCCEEEECCCGG-
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCc---eE--C---CEeeeCCHHHHhhcCCCCCEEEEecCHH-
Confidence 346888898 99999999999999998 555555543200 00 1 3678889999876311289999999986
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEEe
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~v~ 131 (474)
.+.++++++... .. ..+|-.+++.+. +..++.+.+++.|+.+++
T Consensus 83 ~~~~~v~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 127 (297)
T 2yv2_A 83 FAPDAVYEAVDA-GI-RLVVVITEGIPVHDTMRFVNYARQKGATIIG 127 (297)
T ss_dssp GHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 666677666553 12 224445555544 345666777778888775
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00071 Score=66.20 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=76.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC---hHHHHHHHHhhhhcCCCCccc--cCCH---HHHHhhcCCCcEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT---TSKVDETVERAKKEGDLPLFG--FRDP---ESFVNSIQKPRVII 78 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~~~~~~~~~~~~--~~s~---~e~~~~l~~~dvIi 78 (474)
.++.|+|+|.+|++++..|++.|. +|++++|+ .++.+++.+......+..+.. ..+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 89999999 888888776432110000111 2233 344555 99999
Q ss_pred EecCCChh-HHHHHHHH---HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 79 MLVKAGAP-VDETIKTL---SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 79 l~vp~~~~-v~~vl~~l---~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-++|.+-. ... ..+ ...+.++.+|+|..-.+..+ .+.+..+++|...++
T Consensus 226 NaTp~Gm~~~~~--~~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 226 NGTKVGMKPLEN--ESLIGDVSLLRPELLVTECVYNPHMT--KLLQQAQQAGCKTID 278 (312)
T ss_dssp ECSSTTSTTSTT--CCSCCCGGGSCTTCEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred ECCcCCCCCCCC--CcccCCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEEC
Confidence 99997621 010 011 13467889999987665333 344445667776553
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00026 Score=69.12 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=76.3
Q ss_pred CcEEEE-cc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCC
Q 011931 8 TRIGLA-GL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiI-Gl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~ 83 (474)
.+|+|| |+ |.+|...+++|.+.|++ .+|+.+|.+.. +.. . ++.++.+++|+.+ . +|++++++|+
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~i--~---G~~vy~sl~el~~~~~---vD~avI~vP~ 81 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KTH--L---GLPVFNTVKEAKEQTG---ATASVIYVPP 81 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE--T---TEEEESSHHHHHHHHC---CCEEEECCCH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ceE--C---CeeeechHHHhhhcCC---CCEEEEecCH
Confidence 468999 98 99999999999999999 55666664311 000 1 3678889999987 6 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCch-hHHHHHHHHHHc-CCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAEL-GLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~-g~~~v~ 131 (474)
. .+.++++++... .- ..++..+.+.+. +..++.+.+++. |+.+++
T Consensus 82 ~-~~~~~~~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG 128 (305)
T 2fp4_A 82 P-FAAAAINEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128 (305)
T ss_dssp H-HHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred H-HHHHHHHHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence 5 667777666543 12 344445555443 344666777778 888775
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0003 Score=69.00 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=62.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHH--CCCcE-EEEeCChHH-HHHHHHhhhhcCCCCcc-ccCCHHHHHhh--cCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAE--KGFPI-SVYNRTTSK-VDETVERAKKEGDLPLF-GFRDPESFVNS--IQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~--~G~~V-~v~dr~~~~-~~~l~~~~~~~~~~~~~-~~~s~~e~~~~--l~~~dvIil 79 (474)
++||||||+|.+|..++..|.+ .+.++ .++|+++++ ..++.+... +. ...+.+++++. .+..|+|++
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g------~~~~~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMG------VTTTYAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTT------CCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcC------CCcccCCHHHHHhccCCCCCcEEEE
Confidence 4689999999999999999966 34554 478999887 555554331 22 23456676542 133899999
Q ss_pred ecCCChhHHHHHHHHHhcccC--CCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEK--GDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~--g~iiId~st~ 110 (474)
++|+.. ..+.... .+.. |..|++.+..
T Consensus 78 atp~~~-h~~~a~~---al~a~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 78 ATSASA-HVQNEAL---LRQAKPGIRLIDLTPA 106 (312)
T ss_dssp CSCHHH-HHHHHHH---HHHHCTTCEEEECSTT
T ss_pred CCChHH-HHHHHHH---HHHhCCCCEEEEcCcc
Confidence 999643 3333322 2334 8889887754
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.001 Score=65.61 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=69.7
Q ss_pred CcCcEEEEcccHhHHH-HHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHH-hhcCCCcEEEEe-
Q 011931 6 QLTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFV-NSIQKPRVIIML- 80 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~~~~~~~~~~s~~e~~-~~l~~~dvIil~- 80 (474)
.+++|.|||+|.+|.+ +|+.|.+.|++|+++|+++ ...+++.+.+. .+..-.+++++. .. +|+||.+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi-----~v~~g~~~~~l~~~~---~d~vV~Sp 74 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGI-----DVYEGFDAAQLDEFK---ADVYVIGN 74 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTC-----EEEESCCGGGGGSCC---CSEEEECT
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCC-----EEECCCCHHHcCCCC---CCEEEECC
Confidence 3578999999999995 9999999999999999864 34555655442 122223444443 34 8999985
Q ss_pred -cCCCh-hHHHHHH---------HHH-hcc-cCCC-EEEecCCCCchhHHHHHHHHHHcCC
Q 011931 81 -VKAGA-PVDETIK---------TLS-AYM-EKGD-CIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 81 -vp~~~-~v~~vl~---------~l~-~~l-~~g~-iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
+|++. .+....+ +++ ..+ +... |-|-.|+++-.++.-+...|+..|.
T Consensus 75 gi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 75 VAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp TCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 44332 2332221 222 222 2223 4466666665555555667777664
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00026 Score=66.85 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=71.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.|+|+++|+|.||+.+++. . ++++. +|+ ++..++ ++..++++++++.. +|+|+.|-+..
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel----------gv~a~~d~d~lla~---pD~VVe~A~~~- 71 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI----------PGVVRLDEFQVPSD---VSTVVECASPE- 71 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC----------SSSEECSSCCCCTT---CCEEEECSCHH-
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc----------CceeeCCHHHHhhC---CCEEEECCCHH-
Confidence 4899999999999999998 4 88874 777 332222 14567788888765 99999998653
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchh---HHHHHHHHHHcCCeE-EecCCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYEN---TERREKAMAELGLLY-LGMGVSGG 137 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~---~~~~~~~l~~~g~~~-v~~pvsgg 137 (474)
++++ .+.+.|..|.-++.+|.+...+ .+++.+..++.|..+ +..+..+|
T Consensus 72 av~e---~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G 124 (253)
T 1j5p_A 72 AVKE---YSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG 124 (253)
T ss_dssp HHHH---HHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC
T ss_pred HHHH---HHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc
Confidence 4443 3455677888888888763222 233444444445544 44555555
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=4.1e-05 Score=74.93 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=62.8
Q ss_pred cCcEEEEcccHh-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-c-----c--CCHHHHHhhcCCCcEE
Q 011931 7 LTRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-G-----F--RDPESFVNSIQKPRVI 77 (474)
Q Consensus 7 ~~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~-----~--~s~~e~~~~l~~~dvI 77 (474)
-.++.|||.|.| |..+|+.|+..|..|+++||+..+..+..+.... ... . + .++++.+.. +|+|
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~----~~~~~t~~~~t~~~~L~e~l~~---ADIV 249 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKL----NKHHVEDLGEYSEDLLKKCSLD---SDVV 249 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSC----CCCEEEEEEECCHHHHHHHHHH---CSEE
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhh----hcccccccccccHhHHHHHhcc---CCEE
Confidence 357999999976 9999999999999999999984332111111000 011 1 1 456777777 9999
Q ss_pred EEecCCChh-HHHHHHHHHhcccCCCEEEecCCC
Q 011931 78 IMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 78 il~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
|.+++.+.. +. ...+++|.+|||.+..
T Consensus 250 IsAtg~p~~vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 250 ITGVPSENYKFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp EECCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred EECCCCCcceeC------HHHcCCCeEEEEcCCC
Confidence 999987642 11 1346789999999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00054 Score=65.32 Aligned_cols=74 Identities=16% Similarity=0.379 Sum_probs=59.7
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||.|. +|.++|..|...|..|+++++. +.++++.+.. +|+||.+++.+..
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------------------t~~L~~~~~~---ADIVI~Avg~p~~ 206 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------------------TKDIGSMTRS---SKIVVVAVGRPGF 206 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------------CSCHHHHHHH---SSEEEECSSCTTC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------------------cccHHHhhcc---CCEEEECCCCCcc
Confidence 4799999985 8999999999999999999863 2356777777 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 207 I~------~~~vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 207 LN------REMVTPGSVVIDVGINY 225 (276)
T ss_dssp BC------GGGCCTTCEEEECCCEE
T ss_pred cc------HhhccCCcEEEEeccCc
Confidence 22 24578999999998753
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0016 Score=63.53 Aligned_cols=98 Identities=10% Similarity=0.096 Sum_probs=59.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCC--cEEEEeC--ChHHHHHHHHhhhhc--CCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGF--PISVYNR--TTSKVDETVERAKKE--GDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~l~~~~~~~--~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|+| +|.+|.+++..|+..|+ ++.++|+ ++++++.......+. ...++....+..++.+. +|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~---aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAG---SDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTT---CSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCC---CCEEEEc
Confidence 6899999 99999999999998886 6889999 876654322211110 00012222222444444 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
...+. .++++++.+... .+..+|+..||
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 85432 122333444443 45677776655
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00073 Score=62.13 Aligned_cols=73 Identities=14% Similarity=0.304 Sum_probs=50.8
Q ss_pred cCc-EEEEc-ccHhHHHHHHHHH-HCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEE
Q 011931 7 LTR-IGLAG-LAVMGQNLALNIA-EKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~-IgiIG-lG~mG~~lA~~L~-~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIi 78 (474)
||| |.|+| .|.+|..+++.|+ +.|++|++.+|+++ +.+++..... ++.. ..+.+++.+.++.+|+||
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHE-----RVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTST-----TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCC-----ceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 455 99999 6999999999999 89999999999998 7766542221 1111 123333333344489998
Q ss_pred EecCCC
Q 011931 79 MLVKAG 84 (474)
Q Consensus 79 l~vp~~ 84 (474)
.+....
T Consensus 79 ~~ag~~ 84 (221)
T 3r6d_A 79 VGAMES 84 (221)
T ss_dssp ESCCCC
T ss_pred EcCCCC
Confidence 887653
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00052 Score=66.20 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=64.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHC-CCcEE-EEeCChHH-----HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRTTSK-----VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~-----~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
++||+|+| +|.||+.+++.+.+. ++++. ++|++++. +.++.... ..++..++++++++.. +|+||
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~----~~gv~v~~dl~~ll~~---aDVvI 93 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD----FLGVRITDDPESAFSN---TEGIL 93 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS----CCSCBCBSCHHHHTTS---CSEEE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC----cCCceeeCCHHHHhcC---CCEEE
Confidence 45899999 999999999998754 67765 66887532 11111000 1146678899998876 99999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
-++++. .+.+.+ ...++.|.-+|.+||+...
T Consensus 94 DFT~p~-a~~~~~---~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 94 DFSQPQ-ASVLYA---NYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp ECSCHH-HHHHHH---HHHHHHTCEEEECCCCCCH
T ss_pred EcCCHH-HHHHHH---HHHHHcCCCEEEECCCCCH
Confidence 887653 333333 3345567778888887654
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0012 Score=65.81 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=76.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC----hHH----HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT----TSK----VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~----~~~----~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
...||-|+|+|.+|..+|+.|...|. +|+++||+ .++ +..+.+.....-. ......+++|+++. +|+
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~-~~~~~~~L~eav~~---ADV 266 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-PERLSGDLETALEG---ADF 266 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-TTCCCSCHHHHHTT---CSE
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh-ccCchhhHHHHHcc---CCE
Confidence 34689999999999999999999998 89999998 554 2222222221100 11224578888887 999
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
+|-+..++.-. ++....+.++.+|+++||-.|+.+-+.+. +.|-..+..+
T Consensus 267 lIG~Sap~l~t----~emVk~Ma~~pIIfalSNPt~E~~p~~a~---~~g~~i~atG 316 (388)
T 1vl6_A 267 FIGVSRGNILK----PEWIKKMSRKPVIFALANPVPEIDPELAR---EAGAFIVATG 316 (388)
T ss_dssp EEECSCSSCSC----HHHHTTSCSSCEEEECCSSSCSSCHHHHH---HTTCSEEEES
T ss_pred EEEeCCCCccC----HHHHHhcCCCCEEEEcCCCCCCCCHHHHH---HhcCeEEEeC
Confidence 98887643222 34444566788999999977654433332 2344444443
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00079 Score=66.68 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=61.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhh--hcCC----------CCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAK--KEGD----------LPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~--~~~~----------~~~~~~~s~~e~~~~l~ 72 (474)
|+||||+|+|.||+.+++.|.++ +++|. +.|++++...+...... ..+. .++....+++++...
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~-- 78 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE-- 78 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT--
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC--
Confidence 46899999999999999999874 45664 56887665554443210 0000 012222356666665
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||.|+|... ..+..... ++.|..|||.+..
T Consensus 79 -vDvV~~atp~~~-~~~~a~~~---l~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 -ADIVIDCTPEGI-GAKNLKMY---KEKGIKAIFQGGE 111 (337)
T ss_dssp -CSEEEECCSTTH-HHHHHHHH---HHHTCCEEECTTS
T ss_pred -CCEEEECCCchh-hHHHHHHH---HHcCCEEEEecCC
Confidence 999999999874 33333333 3456678888776
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.002 Score=63.76 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=60.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEE-EEeCChHHHHHHHHhhhhc--C---------CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSKVDETVERAKKE--G---------DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~~~~l~~~~~~~--~---------~~~~~~~~s~~e~~~~l~~ 73 (474)
|.||||+|+|.||+.+++.|.++. .+|. +.|++++....+....... . ..++....+++++.+.
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~--- 77 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT--- 77 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---
T ss_pred CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---
Confidence 358999999999999999998763 4654 6788876655554431000 0 0011122244455555
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||.|+|... ..+.... +++.|..+|+.|.-
T Consensus 78 vDvV~~aTp~~~-s~~~a~~---~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 78 SDIVVDTTPNGV-GAQYKPI---YLQLQRNAIFQGGE 110 (340)
T ss_dssp CSEEEECCSTTH-HHHHHHH---HHHTTCEEEECTTS
T ss_pred CCEEEECCCCch-hHHHHHH---HHHcCCeEEEeCCC
Confidence 899999999873 3333332 34567788888765
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00039 Score=58.30 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=74.6
Q ss_pred cCcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|+|||+ +..|..+.++|.+.||+|+-+|+..+.+. +...+.+++|+-. .|++++++|
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~------------G~~~y~sl~dlp~----vDlavi~~p 67 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVL------------GKTIINERPVIEG----VDTVTLYIN 67 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEET------------TEECBCSCCCCTT----CCEEEECSC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCC------------CeeccCChHHCCC----CCEEEEEeC
Confidence 357999997 57999999999999999998887643221 3566777776543 799999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+. .+.++++++...- ...+|+..+.. .+++.+.+++.|+++++
T Consensus 68 ~~-~v~~~v~e~~~~g-~k~v~~~~G~~----~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 68 PQ-NQLSEYNYILSLK-PKRVIFNPGTE----NEELEEILSENGIEPVI 110 (122)
T ss_dssp HH-HHGGGHHHHHHHC-CSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred HH-HHHHHHHHHHhcC-CCEEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence 85 7778887776542 33455544332 24666777888999884
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=71.00 Aligned_cols=100 Identities=14% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCCCc-CcEEEEc-ccHhHHHHHHHHHHCC-CcEEEEeCChH----HHHHHHHh--------hhhcCCCCcccc-CCH
Q 011931 1 MVEGKQL-TRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTS----KVDETVER--------AKKEGDLPLFGF-RDP 64 (474)
Q Consensus 1 m~~~~~~-~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~----~~~~l~~~--------~~~~~~~~~~~~-~s~ 64 (474)
|.++.+| +||+|+| .|.+|+.+++.|.++. ++|...++++. ........ ... .+... .++
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIK----DMVVIPTDP 76 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHH----TCBCEESCT
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCce----eeEEEeCCH
Confidence 6555544 6899999 8999999999998764 57766643221 12211100 000 11111 245
Q ss_pred HHHHh-hcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 65 ESFVN-SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 65 ~e~~~-~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+++.+ . +|+||+|+|.. ...+....+ +..|..|||.++..
T Consensus 77 ~~~~~~~---~DvV~~atp~~-~~~~~a~~~---~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 77 KHEEFED---VDIVFSALPSD-LAKKFEPEF---AKEGKLIFSNASAY 117 (354)
T ss_dssp TSGGGTT---CCEEEECCCHH-HHHHHHHHH---HHTTCEEEECCSTT
T ss_pred HHHhcCC---CCEEEECCCch-HHHHHHHHH---HHCCCEEEECCchh
Confidence 55444 4 99999999975 344444433 45788899998763
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0039 Score=60.95 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=59.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC-C--CcEEEEeCChHHHHHHHHhhhhcCCCC--cccc--CCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK-G--FPISVYNRTTSKVDETVERAKKEGDLP--LFGF--RDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~-G--~~V~v~dr~~~~~~~l~~~~~~~~~~~--~~~~--~s~~e~~~~l~~~dvIil 79 (474)
|||+||| +|.+|.+++..|+.. + .++.++|+++ +++.......+. ... +... ++..+..+. +|+||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~-~~~~~v~~~~~~~~~~~~~~---aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI-PTAVKIKGFSGEDATPALEG---ADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS-CSSEEEEEECSSCCHHHHTT---CSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC-CCCceEEEecCCCcHHHhCC---CCEEEE
Confidence 6899999 899999999999875 5 4899999987 322211111110 011 2221 234445555 999999
Q ss_pred ecCCCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+.+. . ++++.+.+... .+..+|+..||-
T Consensus 76 ~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 120 (312)
T 3hhp_A 76 SAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNP 120 (312)
T ss_dssp CCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSC
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCc
Confidence 885432 1 22233444444 467788888763
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.012 Score=55.55 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=101.6
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 57 ~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
++..+++..|+++. +|++|+-+|-+.....+++.++++++.|.||.++.|.+|.......+.+.++.+.+.++...
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa- 203 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG- 203 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS-
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC-
Confidence 57788999999998 99999999999878889999999999999999999998776666655555555655554211
Q ss_pred CcccccCCCcccc-C-CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011931 137 GEEGARHGPSLMP-G-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (474)
Q Consensus 137 g~~~a~~G~~i~~-g-g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~ 214 (474)
+.++. .|.++.. + .++++.+++.+|.++.+.. .+.+...=.+...-|. ..+.+...+.+.+-+....+.
T Consensus 204 aVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~-------ay~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~~vtkI 274 (358)
T 2b0j_A 204 CVPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGK-------AFKMPANLIGPVCDMC-SAVTATVYAGLLAYRDAVTKI 274 (358)
T ss_dssp SCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSC-------EEEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-CCccccccccCCHHHHHHHHHHHHHhCCC-------eEecchhhccchhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 11121 4553332 2 3899999999999999876 2444332223222222 233444556666666666555
Q ss_pred CCCCHH
Q 011931 215 GKLTNE 220 (474)
Q Consensus 215 G~l~~~ 220 (474)
-|.+.+
T Consensus 275 lgAP~~ 280 (358)
T 2b0j_A 275 LGAPAD 280 (358)
T ss_dssp SCCCHH
T ss_pred hcCcHH
Confidence 435543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0008 Score=64.96 Aligned_cols=73 Identities=15% Similarity=0.349 Sum_probs=57.4
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHH--HHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPE--SFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~--e~~~~l~~~dvIil~vp~~ 84 (474)
.++.|||.|. +|.++|..|...|..|+++++... +++ +.+.. +|+||.+++.+
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------------------~l~l~~~~~~---ADIVI~Avg~p 221 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------------------TEDMIDYLRT---ADIVIAAMGQP 221 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------------------HHHHHHHHHT---CSEEEECSCCT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------------Cchhhhhhcc---CCEEEECCCCC
Confidence 4799999887 799999999999999999997422 223 55666 99999999976
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+. ...+++|.+|||.+..
T Consensus 222 ~~I~------~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 222 GYVK------GEWIKEGAAVVDVGTT 241 (300)
T ss_dssp TCBC------GGGSCTTCEEEECCCE
T ss_pred CCCc------HHhcCCCcEEEEEecc
Confidence 4322 2457899999999875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00019 Score=68.97 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=59.6
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHH-CCCcEE-EEeCChHHHH--HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTSKVD--ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~--~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+|||+|+|+ |.||+.++..+.+ .|++|. ++|+++++.. .+.+..... ..++..+++++++++. +|+||-++
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~~---~DvVIDft 80 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKDD---FDVFIDFT 80 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTTS---CSEEEECS
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhcC---CCEEEEcC
Confidence 469999998 9999999998874 578877 8898764310 000000000 0123445677776665 99999565
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
++. ...+.+. ..+..|.-+|..++...
T Consensus 81 ~p~-~~~~~~~---~a~~~G~~vVigTtG~~ 107 (273)
T 1dih_A 81 RPE-GTLNHLA---FCRQHGKGMVIGTTGFD 107 (273)
T ss_dssp CHH-HHHHHHH---HHHHTTCEEEECCCCCC
T ss_pred ChH-HHHHHHH---HHHhCCCCEEEECCCCC
Confidence 443 3444433 33456776777666543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00045 Score=64.46 Aligned_cols=74 Identities=9% Similarity=0.258 Sum_probs=49.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|++|.|.| .|.+|+.+++.|++.| ++|++++|++++.+.+...... -+.. ..+.+++.+.++.+|+||.+...
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~----~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQ----IIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEE----EEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcE----EEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 45688998 7999999999999999 8999999998765432211100 0000 12344443334458999988765
Q ss_pred C
Q 011931 84 G 84 (474)
Q Consensus 84 ~ 84 (474)
.
T Consensus 99 ~ 99 (236)
T 3qvo_A 99 E 99 (236)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0017 Score=59.31 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=48.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|||.|+| .|.+|+.++..|++.|++|++.+|++++.+.+. ..... ......+...+.+. .+|+||.+....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~--~~~D~~d~~~~~~~---~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINI--LQKDIFDLTLSDLS---DQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEE--EECCGGGCCHHHHT---TCSEEEECCCSS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeE--EeccccChhhhhhc---CCCEEEECCcCC
Confidence 5899999 599999999999999999999999998876653 11100 00001111113334 499999988653
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.014 Score=54.96 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=59.6
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh-hcCCCcEEEEecCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN-SIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~-~l~~~dvIil~vp~ 83 (474)
|||+|+|+ |.||+.++..+.+. +++|. ++|++. +++++.. . +|+||-+.++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----------------------dl~~~~~~~---~DvvIDfT~p 55 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----------------------PLSLLTDGN---TEVVIDFTHP 55 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----------------------CTHHHHHTT---CCEEEECSCT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----------------------CHHHHhccC---CcEEEEccCh
Confidence 58999996 99999999998865 89887 666541 2333333 3 8999977765
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHH-HHHHHHHHc-CCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTE-RREKAMAEL-GLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~-~~~~~l~~~-g~~~v~~p 133 (474)
. .+.+.+.. .+..|.-+|..+|+...... ++.+..++. ++.++-+|
T Consensus 56 ~-a~~~~~~~---a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~ 103 (245)
T 1p9l_A 56 D-VVMGNLEF---LIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 103 (245)
T ss_dssp T-THHHHHHH---HHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECS
T ss_pred H-HHHHHHHH---HHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEEC
Confidence 4 45544433 34467767777776544322 233333322 55544444
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00068 Score=67.03 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=59.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHC-CCcEEEEeCCh---HHHHHHHHhhhhcCCC-CccccC--CHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTT---SKVDETVERAKKEGDL-PLFGFR--DPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~---~~~~~l~~~~~~~~~~-~~~~~~--s~~e~~~~l~~~dvIi 78 (474)
|+||+|+| .|.+|..+.+.|.++ .+++.....+. ..-+.+.+....-.+. ...... +.+++.+. +|+||
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~---~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPG---VDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTT---CSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcC---CCEEE
Confidence 57999999 699999999999884 45777553322 2212222111000000 122221 34444344 99999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+|.+ ...+....+ ++.|..|||.|+-.
T Consensus 81 ~a~p~~-~s~~~~~~~---~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 81 LATAHE-VSHDLAPQF---LEAGCVVFDLSGAF 109 (337)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred ECCChH-HHHHHHHHH---HHCCCEEEEcCCcc
Confidence 999976 334444443 45789999999875
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0017 Score=62.27 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=58.2
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||.|. +|.++|..|...|..|++++++. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHhccc---CCEEEECCCCCCC
Confidence 4799999987 79999999999999999998641 255666666 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. .+.+++|.+|||.+..
T Consensus 218 I~------~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 218 IT------ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp BC------GGGSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEeccc
Confidence 22 2457899999999875
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=62.62 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=59.2
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||.|. +|.++|..|...|..|++++++ +.++.+.+.. +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------------------t~~L~~~~~~---ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------------------TAHLDEEVNK---GDILVVATGQPEM 221 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------------CSSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------------------cccHHHHhcc---CCEEEECCCCccc
Confidence 5799999995 7999999999999999999744 2356666676 9999999998642
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 222 I~------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 222 VK------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred CC------HHHcCCCcEEEEccCCC
Confidence 21 23478999999999864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=58.72 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=48.0
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|||.|+|. |.+|+.++..|++.|++|++.+|++++...+....... ......+...+... .+|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~--~~~D~~d~~~~~~~---~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVAT--LVKEPLVLTEADLD---SVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEE--EECCGGGCCHHHHT---TCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceE--EecccccccHhhcc---cCCEEEECCcc
Confidence 57999996 99999999999999999999999998876553221100 00001111113334 48999988754
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=62.59 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=58.9
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||.|. +|.++|..|...|..|+++++.. .++.+.+.. +|+||.+++.+..
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~l 215 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 215 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhcc---CCEEEECCCCcCc
Confidence 5799999996 69999999999999999997442 356667777 9999999997642
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. ...+++|.+|||.+...
T Consensus 216 I~------~~~vk~GavVIDVgi~r 234 (288)
T 1b0a_A 216 IP------GDWIKEGAIVIDVGINR 234 (288)
T ss_dssp BC------TTTSCTTCEEEECCCEE
T ss_pred CC------HHHcCCCcEEEEccCCc
Confidence 11 13468999999998753
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=62.47 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=58.9
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||.|. +|.++|..|...|..|++++++. .++++.+.. +|+||.+++.+..
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 216 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSSCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhhc---CCEEEECCCCCCc
Confidence 4799999987 69999999999999999998642 256666676 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 217 I~------~~~vk~GavVIDVgi~~ 235 (285)
T 3p2o_A 217 LR------SDMVKEGVIVVDVGINR 235 (285)
T ss_dssp BC------GGGSCTTEEEEECCCEE
T ss_pred CC------HHHcCCCeEEEEeccCc
Confidence 22 24578999999998653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0037 Score=64.34 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=67.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH----HHHHHHHhhhhcCCCCccccCCHHHHHhhcCC-CcEEEEe-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS----KVDETVERAKKEGDLPLFGFRDPESFVNSIQK-PRVIIML- 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~----~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~-~dvIil~- 80 (474)
.++|.|||+|..|.+.|+.|.+.|++|+++|+++. ..+.+.+.+. .+..-..+++... . +|+||++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi-----~~~~g~~~~~~~~---~~~d~vv~sp 80 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI-----KVVCGSHPLELLD---EDFCYMIKNP 80 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTC-----EEEESCCCGGGGG---SCEEEEEECT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCC-----EEEECCChHHhhc---CCCCEEEECC
Confidence 46899999999999999999999999999998642 3444544332 1222223333322 2 6888886
Q ss_pred -cCCCh-hHHHHHH---------HHHhcccCCCEE-EecCCCCchhHHHHHHHHHHcCCe
Q 011931 81 -VKAGA-PVDETIK---------TLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 81 -vp~~~-~v~~vl~---------~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+|... .+....+ +++..+.+..+| |..|+++-.++.-+...|...|..
T Consensus 81 gi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 81 GIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp TSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 34332 2222211 233223334444 555666544455556677777763
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0031 Score=62.42 Aligned_cols=97 Identities=8% Similarity=0.041 Sum_probs=58.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhh--hhcCC------------CCccccCCHHHHHhh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERA--KKEGD------------LPLFGFRDPESFVNS 70 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~--~~~~~------------~~~~~~~s~~e~~~~ 70 (474)
|+||||+|+|.+|+.+++.|.++ +++|. +.|++++....+.+.. ...+. ..+....++.++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 46999999999999999999876 56765 5577666655444331 00000 011122233444444
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+|+|+.|+|.+.. ..... ..+++.|..||+.+.
T Consensus 82 ---vDiV~eatg~~~s-~~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 82 ---ADIVVDGAPKKIG-KQNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp ---CSEEEECCCTTHH-HHHHH--HTTTTTTCEEEECTT
T ss_pred ---CCEEEECCCcccc-HHHHH--HHHHHCCCEEEECCC
Confidence 8999999887632 22222 256777888877433
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=63.70 Aligned_cols=95 Identities=5% Similarity=0.065 Sum_probs=62.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHh-hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVN-SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~-~l~~~dvIil~vp~~~ 85 (474)
++|-|+|.|.+|..+++.|.+.|+ |++.|+++++++ +.+.+... +... ++.+.+.+ .++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~----i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANF----VHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEE----EESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEE----EEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 479999999999999999999999 999999999988 66533210 1121 23333322 2567999999998753
Q ss_pred hHHHHHHHHHhcccCC-CEEEecCC
Q 011931 86 PVDETIKTLSAYMEKG-DCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st 109 (474)
..-.+-..+..+.+. .++.-..+
T Consensus 190 -~n~~~~~~ar~~~~~~~iiar~~~ 213 (336)
T 1lnq_A 190 -ETIHCILGIRKIDESVRIIAEAER 213 (336)
T ss_dssp -HHHHHHHHHHTTCTTSEEEEECSS
T ss_pred -HHHHHHHHHHHHCCCCeEEEEECC
Confidence 222223334445555 45554433
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0021 Score=60.83 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=31.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (474)
.+|.|||+|.+|+.++.+|+..|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 579999999999999999999997 899999986
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00039 Score=68.66 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=58.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---------CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---------FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---------~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
++||||||+|.||+.++..|.+.. .+| .++|+++++.+.+ . ....++|+++++ . .|+
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~----~-----~~~~~~d~~~ll-~---iDv 69 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI----P-----QELLRAEPFDLL-E---ADL 69 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS----C-----GGGEESSCCCCT-T---CSE
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc----C-----cccccCCHHHHh-C---CCE
Confidence 468999999999999999998763 455 4789987643221 0 013566777777 4 999
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEec
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDG 107 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~ 107 (474)
|+.|+|+.....+.+ ...|..|+.|+..
T Consensus 70 Vve~t~~~~~a~~~~---~~AL~aGKhVVta 97 (332)
T 2ejw_A 70 VVEAMGGVEAPLRLV---LPALEAGIPLITA 97 (332)
T ss_dssp EEECCCCSHHHHHHH---HHHHHTTCCEEEC
T ss_pred EEECCCCcHHHHHHH---HHHHHcCCeEEEC
Confidence 999999864333333 3345677777764
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0016 Score=62.29 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=58.2
Q ss_pred CcEEEEcccHh-HHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVM-GQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~m-G~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.++.|||.|.+ |.++|..|... |..|++++++. .++.+.+.+ +|+||.+++.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p 214 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------RDLPALTRQ---ADIVVAAVGVA 214 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSCCT
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------hHHHHHHhh---CCEEEECCCCC
Confidence 57999999975 99999999999 88999997543 356666666 99999999977
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+. .+.+++|.+|||.+...
T Consensus 215 ~~I~------~~~vk~GavVIDVgi~r 235 (281)
T 2c2x_A 215 HLLT------ADMVRPGAAVIDVGVSR 235 (281)
T ss_dssp TCBC------GGGSCTTCEEEECCEEE
T ss_pred cccC------HHHcCCCcEEEEccCCC
Confidence 4221 23468899999998753
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.014 Score=56.63 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=77.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+.++.+|.+.|.+....+..++|.+.+.++. ++|..++.++++.+ ..+|++++.....+-+.+. . +
T Consensus 172 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~-~-----~ 238 (303)
T 3g0o_A 172 PGAGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHA-AGNSWMFENRMQHVVDGDY-T-----P 238 (303)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTCC-C-----C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccCCHHHHhhhHHHhcCCC-C-----C
Confidence 57788999999999999999999999987753 49999999999987 4578887765444333221 1 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
.|. +.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 239 ~~~--~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (303)
T 3g0o_A 239 RSA--VDIFVKDLGLVADTAKALRFPLPLASTALNMFTS 275 (303)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 111 1123445688999999999999999998876653
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00027 Score=65.06 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=55.0
Q ss_pred cCcEEEEcccHhHHHHHHHH--HHCCCcEE-EEeCChH-HHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTS-KVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~-~~~~-l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+.+|+|||+|.+|..++..+ .+.|+++. ++|.+++ +... ... +..+...++++++++. .+.|++++|+
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~------GvpV~~~~dL~~~v~~-~~Id~vIIAv 156 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTED------GIPVYGISTINDHLID-SDIETAILTV 156 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTT------CCBEEEGGGHHHHC-C-CSCCEEEECS
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeEC------CeEEeCHHHHHHHHHH-cCCCEEEEec
Confidence 45799999999999999873 45677765 6799987 6432 111 1123344566666654 3489999999
Q ss_pred CCChhHHHHHHHHHh
Q 011931 82 KAGAPVDETIKTLSA 96 (474)
Q Consensus 82 p~~~~v~~vl~~l~~ 96 (474)
|.. ...++.+.+.+
T Consensus 157 Ps~-~aq~v~d~lv~ 170 (212)
T 3keo_A 157 PST-EAQEVADILVK 170 (212)
T ss_dssp CGG-GHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHH
Confidence 986 45566665554
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00015 Score=66.89 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=53.8
Q ss_pred cCcEEEEcccHhHHHHHHHHH-HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|+|||+|.+|..++..+. ..|+++. ++|.++++....... .++...++++++++. +.|.|++|+|..
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~ell~~--~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG------GVIEHVDLLPQRVPG--RIEIALLTVPRE 151 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT------EEEEEGGGHHHHSTT--TCCEEEECSCHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcC------CeeecHHhHHHHHHc--CCCEEEEeCCch
Confidence 458999999999999998532 1277665 779998875432211 123345677777764 489999999975
Q ss_pred hhHHHHHHHHH
Q 011931 85 APVDETIKTLS 95 (474)
Q Consensus 85 ~~v~~vl~~l~ 95 (474)
...++.+.+.
T Consensus 152 -~~~ei~~~l~ 161 (211)
T 2dt5_A 152 -AAQKAADLLV 161 (211)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 3445554443
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=60.99 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=58.7
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++.|||.|. +|.++|..|...|..|+++++.. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDLADHVSR---ADLVVVAAGKPGL 217 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCHHHHhcc---CCEEEECCCCCCC
Confidence 4799999876 89999999999999999997531 256666777 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .+.+++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 218 VK------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp BC------GGGSCTTCEEEECCSCS
T ss_pred CC------HHHcCCCeEEEEecccc
Confidence 22 24578999999998754
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0024 Score=63.73 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=56.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCC--CCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGD--LPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~--~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+||+|+| .|.+|+.+.+.|.++.. ++...+...+...++...... .+. ..+... + ++..+. +|+||+|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~---vDvVf~atp 91 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFST---VDAVFCCLP 91 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGG---CSEEEECCC
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcC---CCEEEEcCC
Confidence 5899999 89999999999998754 777665433222222211110 000 011111 1 333334 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.....+ .. ..+ +.|..|||.|+-.
T Consensus 92 ~~~s~~-~a---~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 92 HGTTQE-II---KEL-PTALKIVDLSADF 115 (359)
T ss_dssp TTTHHH-HH---HTS-CTTCEEEECSSTT
T ss_pred chhHHH-HH---HHH-hCCCEEEECCccc
Confidence 874332 22 234 6789999999865
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.019 Score=56.06 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=79.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|..++.++++.+. .+|++++.....+.+.+.- +
T Consensus 192 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~~~~~l~~~~~------~ 258 (320)
T 4dll_A 192 HGSGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGGF-ADSRVLQLHGQRMVERDFA------P 258 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTST-TCBHHHHTHHHHHHTTCCC------C
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccc-ccCHHHHHhhhhhccCCCC------C
Confidence 47789999999999999999999999998753 499999999999874 6788887765544433211 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
-|.- .-...+++.++..|-+.|+|+|.+.++...|..
T Consensus 259 gf~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 295 (320)
T 4dll_A 259 RARL--SIQLKDMRNALATAQEIGFDAPITGLFEQLYAE 295 (320)
T ss_dssp SSBH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1211 123455688999999999999999999886654
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0037 Score=61.73 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=61.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeC--ChHHHHHHHHhhhhcCCC----------------Ccccc--CCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNR--TTSKVDETVERAKKEGDL----------------PLFGF--RDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~l~~~~~~~~~~----------------~~~~~--~s~ 64 (474)
|+||||+|+|.+|+.+++.|.++ +.+|. +.|+ +++....+.+.....+.+ .+... .++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998875 46766 5564 677766665421100000 01111 245
Q ss_pred HHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 65 ESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+++.-.-..+|+||.|+|.....+ ....+++.|..+|++|..
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e----~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTME----KAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHH----HHGGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhhHH----HHHHHHhCCCeEEEeccC
Confidence 554100023899999999875433 234566778777777764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0026 Score=58.99 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=51.6
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.|+|.|.|. |.+|+.+++.|++.|++|++.+|++++.+.+...+. ..-..++. .++.++ +.++|+||.+....
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~---~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLE--EDFSHA---FASIDAVVFAAGSG 95 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT--SCCGGG---GTTCSEEEECCCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccH--HHHHHH---HcCCCEEEECCCCC
Confidence 468999996 999999999999999999999999998877665321 10000111 233333 34489999887643
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0021 Score=63.88 Aligned_cols=96 Identities=9% Similarity=0.171 Sum_probs=57.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCC-CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGD-LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~-~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+||+|+| .|.+|+.+.+.|.++.. ++....+..+...++.+....-.+ ..+. ..+.++ +..+|+||+|+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEcCCc
Confidence 46899999 79999999999987754 766554433221111110000000 0111 123332 3459999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.. ..+.... ++..|..|||.|+..
T Consensus 79 ~~-s~~~a~~---~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 GV-FAREFDR---YSALAPVLVDLSADF 102 (345)
T ss_dssp TH-HHHTHHH---HHTTCSEEEECSSTT
T ss_pred HH-HHHHHHH---HHHCCCEEEEcCccc
Confidence 73 3334333 345788999999864
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.013 Score=59.44 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=47.4
Q ss_pred cCcEEEEcccHh-HHHHHHHHHH--C---CCcEEEEeCChHHHHHHHHh---hhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 7 LTRIGLAGLAVM-GQNLALNIAE--K---GFPISVYNRTTSKVDETVER---AKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 7 ~~~IgiIGlG~m-G~~lA~~L~~--~---G~~V~v~dr~~~~~~~l~~~---~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
++||+|||+|.. +..++..|+. . +.+|.+||+++++++..... .... ..++..+++..+.++. ||+|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~-~~~v~~t~d~~~al~~---AD~V 77 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD-RFKVLISDTFEGAVVD---AKYV 77 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT-SSEEEECSSHHHHHTT---CSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhC-CeEEEEeCCHHHHhCC---CCEE
Confidence 479999999985 2222334454 3 56899999999886642221 1110 0134555677777777 9999
Q ss_pred EEecCCC
Q 011931 78 IMLVKAG 84 (474)
Q Consensus 78 il~vp~~ 84 (474)
|++.-.+
T Consensus 78 iitagvg 84 (417)
T 1up7_A 78 IFQFRPG 84 (417)
T ss_dssp EECCCTT
T ss_pred EEcCCCC
Confidence 9999554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0092 Score=57.62 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=69.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|||+|..|+.++.+|+..|. +++++|.+.=....+..........+..-+....+.+..+. +++-|.+.+..-
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iN-P~v~v~~~~~~l 114 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNIN-PDVLFEVHNYNI 114 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHC-TTSEEEEECCCT
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhC-CCcEEEEecccC
Confidence 3589999999999999999999997 88999987522222211110000000111112233333222 566666655431
Q ss_pred ----hHHHHHHHHHh-cc---cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 ----PVDETIKTLSA-YM---EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 ----~v~~vl~~l~~-~l---~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.++.+++.+.. .+ ..-++|||++-.. .+-..+.+.+...++.++.+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 115 TTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF-EARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp TSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred CcHHHHHHHhhhhcccccccCCCCCEEEECCcch-hhhhHHHHHHHHhCCCEEEeeeec
Confidence 22222222211 11 4568999988764 233344555667789999888775
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0023 Score=58.85 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=49.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
||+|.|+| .|.+|+.++..|++.|++|++.+|++++...+.... .+.. ..+.+++.+.++++|+||.+...
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHL------KVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTE------EEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCce------EEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 57899999 699999999999999999999999987654321100 0101 12344443334458999988754
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.63 E-value=0.005 Score=60.82 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=55.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeC--ChHHHHHHHHhhhhcCCC------------------Ccccc--CC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNR--TTSKVDETVERAKKEGDL------------------PLFGF--RD 63 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~l~~~~~~~~~~------------------~~~~~--~s 63 (474)
+||||+|+|.+|+.+++.|.++ +++|. +.|+ +++....+.+.....+.+ .+... .+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~d 83 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRN 83 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSC
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCC
Confidence 5999999999999999999876 56666 4453 455555554211100000 01111 14
Q ss_pred HHHHH---hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCC--EEEecCC
Q 011931 64 PESFV---NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD--CIIDGGN 109 (474)
Q Consensus 64 ~~e~~---~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 109 (474)
++++. .. +|+||.|+|.....+ .. ..+++.|. +|||.+.
T Consensus 84 p~~l~w~~~~---vDvV~eaTg~~~~~e-~a---~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 84 PDEIPWAEAG---AEYVVESTGVFTDKE-KA---AAHLKGGAKKVVISAPS 127 (337)
T ss_dssp GGGCCHHHHT---CSEEEECSSSCCSHH-HH---THHHHTTCSEEEESSCC
T ss_pred hHHccccccC---CCEEEECCCchhhHH-HH---HHHHHcCCCEEEEecCC
Confidence 55431 23 788888888774432 22 23344566 7887765
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.016 Score=55.68 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=79.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.+.++.+|.+.|.+.+..+..++|++.+.++. ++|..++.++++.|. ..|++++.....+.+++..
T Consensus 163 ~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~------ 229 (287)
T 3pef_A 163 DVGKGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAGA-MANPMFALKGGLIRDRNFA------ 229 (287)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHHHHHHTTCCC------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-cccHHHHHHhhhhhcCCCC------
Confidence 356788999999999999999999999998853 499999999999873 5788877765555443211
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
+.|. +.-....++.++..|-+.|+|+|.+.++...|..
T Consensus 230 ~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pef_A 230 PAFP--LKHMQKDLRLAVALGDRVGQPLVASAAANELFKG 267 (287)
T ss_dssp CSSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1121 1123445799999999999999999998876653
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0017 Score=67.31 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=47.7
Q ss_pred CcEEEEcccHhHHH--HHHHHHHC------CCcEEEEeCChHHHHHHHH---hhh-hcC-CCCccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGLAVMGQN--LALNIAEK------GFPISVYNRTTSKVDETVE---RAK-KEG-DLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGlG~mG~~--lA~~L~~~------G~~V~v~dr~~~~~~~l~~---~~~-~~~-~~~~~~~~s~~e~~~~l~~~ 74 (474)
|||+|||.|..|.+ +...++.. +-+|.++|.++++++.... ... ..+ ..++..+++.+++++. +
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 68999999998755 33334421 3479999999988664321 110 000 1246678889998887 9
Q ss_pred cEEEEec
Q 011931 75 RVIIMLV 81 (474)
Q Consensus 75 dvIil~v 81 (474)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0042 Score=55.81 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=47.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+|.|+|. |.+|+.+++.|++.|++|++.+|++++...+... ++.. ..+.+++.+.++.+|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-------PAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-------CSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCC-------ceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 68999996 9999999999999999999999998764321100 1111 1233333333444888888775
Q ss_pred C
Q 011931 83 A 83 (474)
Q Consensus 83 ~ 83 (474)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.011 Score=54.77 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=53.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc---CCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF---RDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~---~s~~e~~~~l~~~dvIil~vp 82 (474)
.++|-|||.|.+|..-+..|.+.|.+|++++++.. .++.+.+.+ ++... -..++ |..+|+||.++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~------~i~~i~~~~~~~d----L~~adLVIaAT~ 100 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKG------QLRVKRKKVGEED----LLNVFFIVVATN 100 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTT------SCEEECSCCCGGG----SSSCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcC------CcEEEECCCCHhH----hCCCCEEEECCC
Confidence 35799999999999999999999999999987753 355555433 12211 12222 344999998877
Q ss_pred CChhHHHHHHHH
Q 011931 83 AGAPVDETIKTL 94 (474)
Q Consensus 83 ~~~~v~~vl~~l 94 (474)
++ .+...+...
T Consensus 101 d~-~~N~~I~~~ 111 (223)
T 3dfz_A 101 DQ-AVNKFVKQH 111 (223)
T ss_dssp CT-HHHHHHHHH
T ss_pred CH-HHHHHHHHH
Confidence 65 555555443
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=56.77 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcCCC----CccccCCHHHHHhhcCCC
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEGDL----PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~~~~----~~~~~~s~~e~~~~l~~~ 74 (474)
||+|+|+ |.+|.+++..|+.... ++.+||.++. +++-..-...+. .+ ++...+++.+..+. +
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~-~~~~~~~~~~~~~~~~a~~~---a 101 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDC-AFPLLDKVVVTADPRVAFDG---V 101 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT-TCTTEEEEEEESCHHHHTTT---C
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhc-CccCCCcEEEcCChHHHhCC---C
Confidence 8999996 9999999999987653 7999999864 222221111110 00 23445667776666 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
|+||++--.+ .. ++++.+.+.....++.+|+-.||-
T Consensus 102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 9999976322 12 222334455545577777777773
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0047 Score=56.51 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=50.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCC-HHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRD-PESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s-~~e~~~~l~~~dvIil~vp~ 83 (474)
|||.|+| .|.+|+.++..|++.|++|++.+|++++.+.+ ... .+.. ..+ .+++.+.++++|+||.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~-----~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNV-----KAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTE-----EEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCc-----eEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 5899998 89999999999999999999999998765432 000 0111 123 55555556668999988765
Q ss_pred C
Q 011931 84 G 84 (474)
Q Consensus 84 ~ 84 (474)
.
T Consensus 74 ~ 74 (219)
T 3dqp_A 74 G 74 (219)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0076 Score=58.49 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=31.9
Q ss_pred CCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 5 ~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+||+|.|+| .|.+|+.++..|++.|++|++.+|++
T Consensus 2 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 2 SHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp --CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred CcccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 4578899999 59999999999999999999999986
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0067 Score=58.81 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.8
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
+++|.|+| .|.+|+.++..|++.|++|++.+|+++
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45899999 599999999999999999999999874
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.037 Score=53.04 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=78.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|..++.++.+.|. ..|++++.....+.+.+.. +
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~------~ 230 (287)
T 3pdu_A 164 VGQGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAGA-MANPMFKGKGQMLLSGEFP------T 230 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHHHHHHHTCCC------C
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccChHHHhhccccccCCCC------C
Confidence 57788999999999999999999999988753 499999999998773 5688777665555443211 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
.|. +.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 231 ~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pdu_A 231 SFP--LKHMQKDLRLAVELGDRLGQPLHGAATANESFKR 267 (287)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 121 1123445799999999999999999998876653
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0072 Score=61.99 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=65.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-C---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+||.|||+|.||+.++..++++. + +|++.|++.... +..+... .+++...|.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------------------~~~~~~g----~~~~~~~Vd 69 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------------------DVAQQYG----VSFKLQQIT 69 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------------------CHHHHHT----CEEEECCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------------------hHHhhcC----CceeEEecc
Confidence 468999999999999999999864 4 688888664321 1112111 344444554
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGV 134 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pv 134 (474)
+. .+++++.. .++.+++||+.+- +.....+.+.+.+.|++|+|..+
T Consensus 70 ad-nv~~~l~a---Ll~~~DvVIN~s~--~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 70 PQ-NYLEVIGS---TLEENDFLIDVSI--GISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp TT-THHHHTGG---GCCTTCEEEECCS--SSCHHHHHHHHHHHTCEEEESSC
T ss_pred ch-hHHHHHHH---HhcCCCEEEECCc--cccCHHHHHHHHHcCCCEEECCC
Confidence 43 44444433 3445699998653 34566777777888999999764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.018 Score=60.00 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=67.8
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp 82 (474)
+++|.|||+|..|.+ +|+.|.+.|++|+++|..+. ..+++.+.+. .+..-.+.+. +.. +|+||.+ +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi-----~~~~g~~~~~-~~~---~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGA-----QIYFHHRPEN-VLD---ASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC-----EEESSCCGGG-GTT---CSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCC-----EEECCCCHHH-cCC---CCEEEECCCCC
Confidence 468999999999985 99999999999999997654 3444544432 1222223332 333 8999886 44
Q ss_pred CCh-hHHHHHH---------HHHhc-ccCC-CEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 83 AGA-PVDETIK---------TLSAY-MEKG-DCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 83 ~~~-~v~~vl~---------~l~~~-l~~g-~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.+. .+....+ +++.. ++.. .|-|-.|+++-.++.-+...|+..|.
T Consensus 93 ~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 93 ADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 432 2222211 22222 2222 25566677765555556677777774
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=64.00 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=57.3
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-----C-cEEEEe-C-ChHH-HHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCc
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-----F-PISVYN-R-TTSK-VDETVERAKKEGDLPLFGF-RDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-----~-~V~v~d-r-~~~~-~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~d 75 (474)
|+||+|+| .|.+|+.+.+.|.+++ + +|..+. + +..+ +.......... ..+... .+.++ ... +|
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~--~~~~~~~~~~~~-~~~---~D 82 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL--AHRVVEPTEAAV-LGG---HD 82 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG--TTCBCEECCHHH-HTT---CS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc--ceeeeccCCHHH-hcC---CC
Confidence 46999999 9999999999999887 3 666554 2 2222 21110000000 011111 23333 334 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
+||+|+|... ..++...+ ..|..+||.|+..-
T Consensus 83 vVf~alg~~~-s~~~~~~~----~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 83 AVFLALPHGH-SAVLAQQL----SPETLIIDCGADFR 114 (352)
T ss_dssp EEEECCTTSC-CHHHHHHS----CTTSEEEECSSTTT
T ss_pred EEEECCCCcc-hHHHHHHH----hCCCEEEEECCCcc
Confidence 9999999873 34444333 56899999998763
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=56.91 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.6
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|++|.|+|. |.+|+.++..|++.|++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 568999995 9999999999999999999999986
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0089 Score=59.23 Aligned_cols=95 Identities=24% Similarity=0.244 Sum_probs=59.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|.|||||| .|..|..|.+.|.++-. ++.........-+.+.+....- ....+.. .+.+++.++ +|++|+|+|.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~-~~~~~~~~~---~Dvvf~alp~ 88 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSE-FDPEKVSKN---CDVLFTALPA 88 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBC-CCHHHHHHH---CSEEEECCST
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEe-CCHHHhhcC---CCEEEECCCc
Confidence 56899997 89999999999998743 5655543222111122110000 0001222 245666566 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+. .. ++.+.+ .|..|||.|+..
T Consensus 89 ~~-s~----~~~~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 89 GA-SY----DLVREL-KGVKIIDLGADF 110 (351)
T ss_dssp TH-HH----HHHTTC-CSCEEEESSSTT
T ss_pred HH-HH----HHHHHh-CCCEEEECChhh
Confidence 73 33 344555 899999999875
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.014 Score=56.28 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=47.9
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCC-----hHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRV 76 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dv 76 (474)
+|+|.|+| .|.+|+.++..|++.|++|++.+|+ +++.+.+..... . ++.. ..+.+++.+.++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHh-C---CeEEEeCCCCCHHHHHHHHhCCCE
Confidence 57899999 5999999999999999999999998 445443322110 0 1111 1233444444445888
Q ss_pred EEEecCC
Q 011931 77 IIMLVKA 83 (474)
Q Consensus 77 Iil~vp~ 83 (474)
||.+...
T Consensus 80 vi~~a~~ 86 (313)
T 1qyd_A 80 VISALAG 86 (313)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8877654
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=55.93 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=61.2
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC--c-----EEEEeCCh--HHHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF--P-----ISVYNRTT--SKVDETVERAKKEG-DL--PLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~--~-----V~v~dr~~--~~~~~l~~~~~~~~-~~--~~~~~~s~~e~~~~l~~ 73 (474)
-+||+|+| +|.+|.+++..|+..|. + +.++|+++ ++++.......+.. .+ ++....+..+..+.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~d--- 79 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCC---
Confidence 35899999 89999999999998876 5 99999975 33333222211100 00 12334455555555
Q ss_pred CcEEEEecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 74 PRVIIMLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 74 ~dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+|+||++...+. .++++++.+..+-.++..|+..||-
T Consensus 80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 999999763221 1334445555544334457777763
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.026 Score=53.16 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=57.5
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|+.....+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.
T Consensus 2 mm~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~ 61 (259)
T 4e6p_A 2 MMKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----------------PA---AYAVQM 61 (259)
T ss_dssp --CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------------TT---EEEEEC
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------CC---ceEEEe
Confidence 33333334566776 7899999999999999999999999988776654321 00 112222
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+...++.+++++.....+=+++|++...
T Consensus 62 D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 62 DVTRQDSIDAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp CTTCHHHHHHHHHHHHHHSSSCCEEEECCCC
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2334445666666666655555777776654
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=54.33 Aligned_cols=81 Identities=10% Similarity=0.116 Sum_probs=55.2
Q ss_pred CcEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.|..+| |.+-+|.++|+.|++.|++|.+.||++++.+++.+++.. +..+-.=+.+..
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~---------------------~~~~~~Dv~~~~ 60 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN---------------------LFYFHGDVADPL 60 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT---------------------EEEEECCTTSHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---------------------EEEEEecCCCHH
Confidence 355555 588899999999999999999999998877665543210 112222234445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+++.+++++...+.+=+++|+...
T Consensus 61 ~v~~~v~~~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 61 TLKKFVEYAMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 677777777666666677777654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=63.81 Aligned_cols=68 Identities=24% Similarity=0.499 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHhhccCc-chhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHHHHHcCCCcccHHHHH
Q 011931 215 GKLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIEERV 292 (474)
Q Consensus 215 G~l~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~~~r~ 292 (474)
| ++.+++.++ |+.|. +.||+++++.+++... |. ++.+.+.+.++|+|+|+++.|.+.|+|+|++...+
T Consensus 259 ~-~d~~~i~~~---~~~g~~~~s~~l~~~~~~~~~~----p~--~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al 327 (358)
T 4e21_A 259 D-LDLADITEV---WRRGSVISSWLLDLSATALLDS----PD--LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSAL 327 (358)
T ss_dssp C-CCHHHHHHH---HTTTSTTCBHHHHHHHHHHHHC----TT--CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred C-CCHHHHHHH---HhCccHHHHHHHHHHHHHHhhC----CC--hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHH
Confidence 5 777776555 78876 7999999998888652 21 12233445568899999999999999999996543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0041 Score=65.91 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~--~l~~~dvIil~vp~~~ 85 (474)
++|.|+|+|.+|..+|+.|.+.|++|.+.|.++++++++. .. +....+..++.. .++++|.+|++++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~-------i~gD~t~~~~L~~agi~~ad~vi~~~~~d- 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VV-------VYGDATVGQTLRQAGIDRASGIIVTTNDD- 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CE-------EESCSSSSTHHHHHTTTSCSEEEECCSCH-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CE-------EEeCCCCHHHHHhcCccccCEEEEECCCc-
Confidence 6799999999999999999999999999999998766542 10 122222223322 256799999999875
Q ss_pred hHHHHHHHHHhcccCC-CEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKG-DCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~ 110 (474)
...-.+..++..+.+. .+|.-..+.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~~~~ 445 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARANGE 445 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEESST
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 3333334445556666 455544443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.013 Score=55.35 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=30.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (474)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 3589999999999999999999997 788998774
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0088 Score=59.41 Aligned_cols=96 Identities=10% Similarity=0.126 Sum_probs=55.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEEe-CChHHHHHHHHhhhhc-------CCCCccccC-CHHHHHhhcCCCc
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPISVYN-RTTSKVDETVERAKKE-------GDLPLFGFR-DPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~d-r~~~~~~~l~~~~~~~-------~~~~~~~~~-s~~e~~~~l~~~d 75 (474)
|+||||+| .|.+|+.+.+.|.++. ++|.... .+....+.+.+..... ++..+.... +++++ +. +|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~---vD 79 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-KD---VD 79 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-TT---CS
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-cC---CC
Confidence 56899999 8999999999988764 4676553 2222211121110000 000112211 33443 44 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+||+|+|.. ...+.... +++.|..|||.|+.
T Consensus 80 vVf~atp~~-~s~~~a~~---~~~aG~~VId~s~~ 110 (350)
T 2ep5_A 80 VVLSALPNE-LAESIELE---LVKNGKIVVSNASP 110 (350)
T ss_dssp EEEECCCHH-HHHHHHHH---HHHTTCEEEECSST
T ss_pred EEEECCChH-HHHHHHHH---HHHCCCEEEECCcc
Confidence 999999975 33333333 34568889999875
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.025 Score=53.23 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=53.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...+
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 69 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----------------PR---VHALRSDIADLNEI 69 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHHH
Confidence 455555 7899999999999999999999999988776654321 01 12222223344456
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++.+.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 70 AVLGAAAGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 66666665555444677776544
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.035 Score=56.08 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=75.4
Q ss_pred CcEEEEcccHhHHHHHHHHHH-CCCcEE-EEeC----------ChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAE-KGFPIS-VYNR----------TTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~-~G~~V~-v~dr----------~~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l~~~ 74 (474)
++|+|.|.|+||+..+..|.+ .|.+|+ +.|. +++.+.++.+....-.++ +... .+.+++... .|
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~-~~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEE-ECHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceE-cCchhhhcC--CC
Confidence 579999999999999999999 999887 6676 677777766542110000 0111 145555431 49
Q ss_pred cEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 75 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|+++-|.....-.. +-.+.+ .-.+|+..+|... +.+..+.+.++|+.++.
T Consensus 287 DIliP~A~~n~i~~----~~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~P 336 (415)
T 2tmg_A 287 DILVPAALEGAIHA----GNAERI-KAKAVVEGANGPT--TPEADEILSRRGILVVP 336 (415)
T ss_dssp SEEEECSSTTSBCH----HHHTTC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred cEEEecCCcCccCc----ccHHHc-CCeEEEeCCCccc--CHHHHHHHHHCCCEEEC
Confidence 99999877653212 223334 5678888888763 45666778889988774
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.029 Score=54.71 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=46.1
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeC--ChHHHHH----HHHhhhhcCCCCccccC---CHHHHHhhcCCCc
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNR--TTSKVDE----TVERAKKEGDLPLFGFR---DPESFVNSIQKPR 75 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----l~~~~~~~~~~~~~~~~---s~~e~~~~l~~~d 75 (474)
|||.|+|+ |.+|.+++..|+..|+ ++.++|+ ++++++. +....... +.+..... ++.++.+. +|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~-~~~~~i~~~~d~l~~al~g---aD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGT-RSDANIYVESDENLRIIDE---SD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTS-CCCCEEEEEETTCGGGGTT---CS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhc-CCCeEEEeCCcchHHHhCC---CC
Confidence 58999999 9999999999998885 6889999 7655432 22211100 00112221 13455555 99
Q ss_pred EEEEecC
Q 011931 76 VIIMLVK 82 (474)
Q Consensus 76 vIil~vp 82 (474)
+||++.-
T Consensus 77 ~Vi~~Ag 83 (313)
T 1hye_A 77 VVIITSG 83 (313)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999874
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.021 Score=57.99 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=75.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l~~~ 74 (474)
-++|+|.|.|++|+..|+.|.+.|.+|+ +.|+ +.+.+.++.+......++ ... ..+.+++.. ..|
T Consensus 235 g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~-~i~~~ei~~--~~~ 311 (440)
T 3aog_A 235 GARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAE-PLPAADFWG--LPV 311 (440)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSE-ECCHHHHTT--CCC
T ss_pred CCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCce-EcCchhhhc--CCC
Confidence 3579999999999999999999999887 6677 667776666542110000 011 124455543 149
Q ss_pred cEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 75 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|+++-|.....-. .+-++.+ .-.+|+..+|... +.+..+.+.++|+.|+.
T Consensus 312 DIlvPcA~~n~i~----~~na~~l-~ak~VvEgAN~p~--t~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 312 EFLVPAALEKQIT----EQNAWRI-RARIVAEGANGPT--TPAADDILLEKGVLVVP 361 (440)
T ss_dssp SEEEECSSSSCBC----TTTGGGC-CCSEEECCSSSCB--CHHHHHHHHHHTCEEEC
T ss_pred cEEEecCCcCccc----hhhHHHc-CCcEEEecCcccc--CHHHHHHHHHCCCEEEC
Confidence 9999987654211 1222334 5678888888763 45666778889998774
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0055 Score=56.25 Aligned_cols=33 Identities=15% Similarity=0.449 Sum_probs=31.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999875
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.017 Score=58.80 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=70.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC---cEEEEe----CC----hH-H---HHHHHHhhhhcCCCCc-cccCCHHHHHhh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF---PISVYN----RT----TS-K---VDETVERAKKEGDLPL-FGFRDPESFVNS 70 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~---~V~v~d----r~----~~-~---~~~l~~~~~~~~~~~~-~~~~s~~e~~~~ 70 (474)
..+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .. . +..+.+..... .+. ....++.++++.
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~--~~~~~~~~~L~e~l~~ 263 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKK--TNGENIEGGPQEALKD 263 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTT--SCTTCCCSSHHHHHTT
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhc--cccccccccHHHHhcc
Confidence 3579999999999999999999998 899999 87 32 2 21111111100 001 013467777776
Q ss_pred cCCCcEEEEecCC--ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 71 IQKPRVIIMLVKA--GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 71 l~~~dvIil~vp~--~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
+|+||-++|. +. ... .....+.++.+|+|+++-.++...+ ...+.|...+
T Consensus 264 ---aDVlInaT~~~~G~-~~~---e~v~~m~~~~iVfDLynP~~t~~~~---~A~~~G~~iv 315 (439)
T 2dvm_A 264 ---ADVLISFTRPGPGV-IKP---QWIEKMNEDAIVFPLANPVPEILPE---EAKKAGARIV 315 (439)
T ss_dssp ---CSEEEECSCCCSSS-SCH---HHHTTSCTTCEEEECCSSSCSSCHH---HHHHHTCSEE
T ss_pred ---CCEEEEcCCCccCC-CCh---HHHHhcCCCCEEEECCCCCCcchHH---HHHHcCCeEE
Confidence 9999999997 42 211 2334567888999996654433322 3334466555
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.043 Score=53.29 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=36.9
Q ss_pred CcCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 6 QLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 6 ~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+.++|.|.|. |.+|+.++..|++.|++|++.+|++++.+.+.+
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHH
Confidence 4468999986 999999999999999999999999887665543
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.033 Score=56.37 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=76.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKP 74 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~ 74 (474)
-++|.|.|.|++|+..|+.|.+.|.+|+ +.|+ +.+.+.++.+... .+.. .-+.+++... .|
T Consensus 218 gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g-----~v~~~~~~~~e~~~~--~~ 290 (419)
T 3aoe_E 218 GARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG-----SLPRLDLAPEEVFGL--EA 290 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS-----SCSCCCBCTTTGGGS--SC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC-----Ccceeeccchhhhcc--Cc
Confidence 3579999999999999999999999988 7788 7777777766532 1110 1122333321 39
Q ss_pred cEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 75 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|+++-|..... +. ..-.+.+ .=++|+..+|... |.+..+.|.++|+.|+.
T Consensus 291 DVliP~A~~n~-i~---~~~A~~l-~ak~V~EgAN~p~--t~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 291 EVLVLAAREGA-LD---GDRARQV-QAQAVVEVANFGL--NPEAEAYLLGKGALVVP 340 (419)
T ss_dssp SEEEECSCTTC-BC---HHHHTTC-CCSEEEECSTTCB--CHHHHHHHHHHTCEEEC
T ss_pred eEEEecccccc-cc---cchHhhC-CceEEEECCCCcC--CHHHHHHHHHCCCEEEC
Confidence 99998876542 22 2223444 3468999998763 45666788899998874
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.033 Score=52.65 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=59.6
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| |.+-+|.++|+.|++.|.+|.++||++++++++.++....+ .. +..+..=+.+..+
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--------------~~---~~~~~~Dvt~~~~ 70 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--------------KE---VLGVKADVSKKKD 70 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEccCCCHHH
Confidence 56777 57889999999999999999999999998887765432110 00 2222223455567
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+=+++|+...
T Consensus 71 v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 71 VEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCc
Confidence 77778777777766688888664
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.017 Score=55.39 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=31.3
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|++|.|+|. |.+|+.++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 578999995 9999999999999999999999973
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.042 Score=53.80 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=46.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG-DL--PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~~-~~--~~~~~~s~~e~~~~l~~~ 74 (474)
|||.|+|. |.+|++++..|++.|+ +|.++|+++ ++.+.......... .+ ++....+..++++. +
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~---~ 81 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD---A 81 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC---C
Confidence 58999996 9999999999999996 899999975 22222111111000 00 12223455555555 9
Q ss_pred cEEEEecC
Q 011931 75 RVIIMLVK 82 (474)
Q Consensus 75 dvIil~vp 82 (474)
|+||.+..
T Consensus 82 D~Vih~Ag 89 (327)
T 1y7t_A 82 DYALLVGA 89 (327)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998753
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0048 Score=61.48 Aligned_cols=35 Identities=9% Similarity=0.266 Sum_probs=27.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC----CcEE-EEeCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG----FPIS-VYNRTT 40 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~-v~dr~~ 40 (474)
+++||||||+|.||+.++..|.+.. .+|. ++|+++
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~ 42 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER 42 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence 3568999999999999999999863 4554 667643
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.033 Score=55.16 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=56.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEEEEe--C-ChHHHHHHHHhhhhcCCC----------------Ccccc--CCH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYN--R-TTSKVDETVERAKKEGDL----------------PLFGF--RDP 64 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~d--r-~~~~~~~l~~~~~~~~~~----------------~~~~~--~s~ 64 (474)
|+||||+|+|.+|+.+.+.|.++ .++|...+ + +.+....+.+.....+.+ .+... .++
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp 96 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDP 96 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCG
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCCh
Confidence 56999999999999999999887 57777554 2 333333332211100000 01122 244
Q ss_pred HHHH---hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCC--EEEecCC
Q 011931 65 ESFV---NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD--CIIDGGN 109 (474)
Q Consensus 65 ~e~~---~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 109 (474)
+++. .. +|+||.|+|.....+ ....+++.|. +|||.+.
T Consensus 97 ~~i~w~~~~---vDvV~eatg~~~s~e----~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 97 AEIPWGASG---AQIVCESTGVFTTEE----KASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGCCHHHHT---CCEEEECSSSCCSHH----HHGGGGTTTCSEEEESSCC
T ss_pred HHCCcccCC---CCEEEECCCchhhHH----HHHHHHHcCCcEEEEeCCC
Confidence 4431 23 899999999874432 2234566777 8998876
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.018 Score=56.50 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.2
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
+|+|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 468999996 9999999999999999999999976
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.034 Score=58.26 Aligned_cols=113 Identities=11% Similarity=0.067 Sum_probs=68.6
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHCCCcEEEEeCCh--HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--c
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTT--SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--V 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--v 81 (474)
.++|-|||.|..|.+ +|+.|.+.|++|+++|.+. ...+++.+.+. .+..-.+++.+... +|+||.+ +
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi-----~~~~G~~~~~~~~~---~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGV-----TIEEGYLIAHLQPA---PDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTC-----EEEESCCGGGGCSC---CSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCC-----EEECCCCHHHcCCC---CCEEEECCCc
Confidence 468999999999986 7888999999999999863 34455655442 12222344444333 8999885 4
Q ss_pred CCCh-hHHHHHH---------HHHh-cc-cCC-CEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 82 KAGA-PVDETIK---------TLSA-YM-EKG-DCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 82 p~~~-~v~~vl~---------~l~~-~l-~~g-~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
|.+. .+....+ +++. .+ +.. -|-|-.|+++-.++.-+...|+..|.
T Consensus 91 ~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 91 KRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp CTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 4432 2332221 2222 22 222 35566677765555556677777664
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.055 Score=50.95 Aligned_cols=90 Identities=10% Similarity=0.057 Sum_probs=57.2
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|....+.++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... .. ...+..
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~ 60 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DA---ARYVHL 60 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GG---EEEEEC
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cC---ceEEEe
Confidence 43333334566776 7899999999999999999999999887766543211 01 122222
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+...++.+++++.....+=+++|++...
T Consensus 61 D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 91 (260)
T 1nff_A 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGI 91 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2334445666666666555555777776654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.082 Score=51.26 Aligned_cols=105 Identities=15% Similarity=0.247 Sum_probs=77.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccC
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 389 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~ 389 (474)
+.+.++.+|.+.|.+..+.+..++|++.+.++. ++|..++.++.+.| ...|++++.....+.+.+.-
T Consensus 183 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------ 249 (310)
T 3doj_A 183 QVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLG-AMTNPMFKGKGPSMNKSSYP------ 249 (310)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------
Confidence 357788999999999999999999999998853 39999999999876 34577766544444333211
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 390 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 390 ~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
+-|. +.-...+++-++..|-+.|+|+|.+.++...|..
T Consensus 250 ~~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 287 (310)
T 3doj_A 250 PAFP--LKHQQKDMRLALALGDENAVSMPVAAAANEAFKK 287 (310)
T ss_dssp CSSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCcc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1121 1123445688999999999999999998876653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.007 Score=58.50 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=32.3
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 44 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 44 (474)
+|+|.|.| .|.+|+.++..|++.|++|++.+|+++..+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 40 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA 40 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc
Confidence 57899998 799999999999999999999999955433
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.019 Score=55.79 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=71.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCc-chhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCI-IRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gci-i~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
++++.+| .+.++.+..++|++.+.++. ++|..++.++++.+.- .+|++++.....+.++.. . +
T Consensus 174 g~g~~~k----~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~-----~ 237 (306)
T 3l6d_A 174 AFATVLH----AHAFAAMVTFFEAVGAGDRF------GLPVSKTARLLLETSRFFVADALEEAVRRLETQDF-K-----G 237 (306)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-C-----T
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCC-C-----C
Confidence 4556666 67788999999999987753 4999999999987632 578888776555544321 1 1
Q ss_pred H-HHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 391 E-FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 391 ~-~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
. |. +.-...+++.++..|-+.|+|+|.+.++...|..
T Consensus 238 ~~~~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (306)
T 3l6d_A 238 DQAR--LDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQR 275 (306)
T ss_dssp TSSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred Cccc--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1 11 1122345689999999999999999999886654
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0038 Score=62.34 Aligned_cols=92 Identities=9% Similarity=0.116 Sum_probs=53.9
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~~~~~~~~~-~s~~e~~~~l~~~dvIil~v 81 (474)
++||+||| .|..|..|.+.|.+++|+ +.........-+.+.-.+. ..... .+.++ .+ .+|+||+|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~-----~~~~~~~~~~~-~~---~~Dvvf~a~ 72 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETA-FE---GVDIALFSA 72 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTE-----EEEEEECCTTT-TT---TCSEEEECS
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCC-----CceEeeCCHHH-hc---CCCEEEECC
Confidence 46899999 899999999999988773 3333321110000000000 01111 12222 23 499999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.. ...+....+ +..|..|||.|+..
T Consensus 73 ~~~-~s~~~a~~~---~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 73 GSS-TSAKYAPYA---VKAGVVVVDNTSYF 98 (366)
T ss_dssp CHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred ChH-hHHHHHHHH---HHCCCEEEEcCCcc
Confidence 875 334444333 45789999999864
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0071 Score=60.40 Aligned_cols=35 Identities=23% Similarity=0.572 Sum_probs=32.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.|||.|||+|..|..+|..|+++|++|++++++++
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 37999999999999999999999999999998753
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.029 Score=53.15 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=55.5
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~~~ 85 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.+ +=+.+..
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----------------G---GTALAQVLDVTDRH 66 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 355556 688999999999999999999999998877765533210 0 22222 2234445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+.....+=+++|++...
T Consensus 67 ~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 67 SVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655556777776654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.05 Score=50.42 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=54.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 63 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----------------NA---VIGIVADLAHHED 63 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------CC---ceEEECCCCCHHH
Confidence 3466666 6899999999999999999999999988776554321 01 2222222334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|++...
T Consensus 64 v~~~~~~~~~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 64 VDVAFAAAVEWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEECCCC
Confidence 666666665555455677776554
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.06 Score=50.36 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|....+.++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+.... . ...+.... .+..++..
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~-~~~~~~~~-~~~~~~~~ 70 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGG--------P-GSKEGPPR-GNHAAFQA 70 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC----------------------CCEEEEC
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh--------c-CccccccC-cceEEEEe
Confidence 33333334577776 79999999999999999999999999887766543210 0 00000000 00222322
Q ss_pred ecCCChhHHHHHHHHHhcccCC-CEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKG-DCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g-~iiId~st~ 110 (474)
=+.+...++.+++.+.....+= ++||++...
T Consensus 71 D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 71 DVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102 (264)
T ss_dssp CTTSHHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 2334445666666665544443 788887654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.014 Score=55.61 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=48.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|+|.|.| .|.+|+.++..|.+. |++|.+.+|++++...+...+. .+.. ..+.+++.+.++.+|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v-----~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKV-----SVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTB-----EEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCC-----EEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5799999 699999999999998 9999999999887544322111 0111 12444444445558888887654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.04 Score=58.17 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=62.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~ 83 (474)
.++|-|+|.|.+|..++..|.+.|++|++.|.++++++++.+. +... +....+..+.... ++++|.+|+ +++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~a~~vi~-t~~ 201 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKV----VYGSPTDAHVLAGLRVAAARSIIA-NLS 201 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEE----EESCTTCHHHHHHTTGGGCSEEEE-CSC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeE----EEeCCCCHHHHHhcCcccCCEEEE-eCC
Confidence 4579999999999999999999999999999999999888765 3210 1222222333322 446999987 444
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+ .....+-..+..+..-.++.-..+
T Consensus 202 D-~~n~~~~~~ar~~~~~~iiar~~~ 226 (565)
T 4gx0_A 202 D-PDNANLCLTVRSLCQTPIIAVVKE 226 (565)
T ss_dssp H-HHHHHHHHHHHTTCCCCEEEECSS
T ss_pred c-HHHHHHHHHHHHhcCceEEEEECC
Confidence 3 333222223334444455554433
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.042 Score=52.48 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=56.7
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+++| |.+-+|.++|+.|++.|.+|.+.+|+++++++..++... . +-.+-.=+.+..+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~-----------------~---~~~~~~Dv~~~~~ 89 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG-----------------G---AVGIQADSANLAE 89 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---CEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eEEEEecCCCHHH
Confidence 67777 567899999999999999999999999988776654311 1 2222222444556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|+....
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNAG~ 113 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNAGG 113 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777776665555677776543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.049 Score=51.70 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=57.7
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| |.|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .-.. ...+.+=+.+...
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dv~d~~~ 91 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ--------------AGLE---GRGAVLNVNDATA 91 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH--------------HTCC---CEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEEeCCCHHH
Confidence 45555 478999999999999999999999999887766543211 0011 3334344455556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 92 VDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777776666556788887654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.032 Score=53.30 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=55.1
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~~ 85 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 10 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~ 70 (280)
T 3tox_A 10 IAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG----------------G---GEAAALAGDVGDEA 70 (280)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT----------------T---CCEEECCCCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 344445 689999999999999999999999998887766543110 0 222222 233344
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+.....+=+++|++...
T Consensus 71 ~v~~~~~~~~~~~g~iD~lvnnAg~ 95 (280)
T 3tox_A 71 LHEALVELAVRRFGGLDTAFNNAGA 95 (280)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655556778877654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=58.75 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=55.4
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEE-eCCh--HHHHHHHH---------hhhhcCCCCcccc-CCHHHHHhhc
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRTT--SKVDETVE---------RAKKEGDLPLFGF-RDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~~--~~~~~l~~---------~~~~~~~~~~~~~-~s~~e~~~~l 71 (474)
++|||||| .|..|..|.+.|.++- .++... .++. .++..... ... ..... .+.+++ +
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-----~~~v~~~~~~~~-~-- 78 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-----DMEIKPTDPKLM-D-- 78 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-----TCBCEECCGGGC-T--
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccc-----cceEEeCCHHHh-c--
Confidence 46899999 7999999999887653 355533 3332 12222100 000 01111 133332 3
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+|+||+|+|.+. ..+....+ +..|..|||.|+-.
T Consensus 79 -~vDvvf~a~p~~~-s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 79 -DVDIIFSPLPQGA-AGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp -TCCEEEECCCTTT-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred -CCCEEEECCChHH-HHHHHHHH---HHCCCEEEEcCCCc
Confidence 3999999999874 44444443 45799999999864
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=58.75 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=55.4
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEE-eCCh--HHHHHHHH---------hhhhcCCCCcccc-CCHHHHHhhc
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRTT--SKVDETVE---------RAKKEGDLPLFGF-RDPESFVNSI 71 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~~--~~~~~l~~---------~~~~~~~~~~~~~-~s~~e~~~~l 71 (474)
++|||||| .|..|..|.+.|.++- .++... .++. .++..... ... ..... .+.+++ +
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-----~~~v~~~~~~~~-~-- 78 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-----DMEIKPTDPKLM-D-- 78 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-----TCBCEECCGGGC-T--
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccc-----cceEEeCCHHHh-c--
Confidence 46899999 7999999999887653 355533 3332 12222100 000 01111 133332 3
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 72 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+|+||+|+|.+. ..+....+ +..|..|||.|+-.
T Consensus 79 -~vDvvf~a~p~~~-s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 79 -DVDIIFSPLPQGA-AGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp -TCCEEEECCCTTT-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred -CCCEEEECCChHH-HHHHHHHH---HHCCCEEEEcCCCc
Confidence 3999999999874 44444443 45799999999864
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.025 Score=57.34 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEE-EEeCCh---------------HHHHHHHHhhhhcCCC-CccccCCHHHHHhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTT---------------SKVDETVERAKKEGDL-PLFGFRDPESFVNS 70 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~---------------~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~ 70 (474)
++|.|.|.|++|+..|+.|.+.|.+|+ +.|.++ +.+.++.+.......+ +.... +.+++..
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~- 290 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWT- 290 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccchhc-
Confidence 579999999999999999999999988 778883 5555555432100000 00111 2233322
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 71 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
-+||+++-|.....-.. +-++.+ ...+|+..+|.+ .+.+..+.+.++|+.|+.
T Consensus 291 -~~~DIliP~A~~n~i~~----~~A~~l-~ak~VvEgAN~P--~t~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 291 -KEYDIIVPAALENVITG----ERAKTI-NAKLVCEAANGP--TTPEGDKVLTERGINLTP 343 (421)
T ss_dssp -----CEEECSCSSCSCH----HHHTTC-CCSEEECCSSSC--SCHHHHHHHHHHTCEEEC
T ss_pred -CCccEEEEcCCcCcCCc----ccHHHc-CCeEEEeCCccc--cCHHHHHHHHHCCCEEEC
Confidence 13899998876653222 223334 578888888876 345666778888988774
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.027 Score=55.76 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=48.6
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHH--HHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV--DETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~~~~~~~~~~~~---~~s~~e~~~~l~~~dvIil~ 80 (474)
.|+|.|.| .|.+|+.++..|++.|++|++.+|++++. +.+...... .+.. .++.+++.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v----~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV----TLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE----EEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc----EEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 46799998 69999999999999999999999987654 333221000 0111 12444444434459999977
Q ss_pred cCC
Q 011931 81 VKA 83 (474)
Q Consensus 81 vp~ 83 (474)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0074 Score=60.34 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=68.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh-------HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT-------SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~-------~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
..||-|+|+|..|.++|+.+...|. +|+++|++. +.+..+.+.....-. ......+++|+++. +|++|
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-~~~~~~~L~eav~~---ADV~I 263 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-REFKSGTLEDALEG---ADIFI 263 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-CTTCCCSCSHHHHT---TCSEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC-cccchhhHHHHhcc---CCEEE
Confidence 4689999999999999999999999 999999873 222222221111000 01124578999998 99887
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhH
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT 115 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~ 115 (474)
=+..++... +++...+.++.||+++||-.|+.+
T Consensus 264 G~Sapgl~T----~EmVk~Ma~~pIIfalsNPt~E~~ 296 (398)
T 2a9f_A 264 GVSAPGVLK----AEWISKMAARPVIFAMANPIPEIY 296 (398)
T ss_dssp ECCSTTCCC----HHHHHTSCSSCEEEECCSSSCSSC
T ss_pred ecCCCCCCC----HHHHHhhCCCCEEEECCCCCccCC
Confidence 765543223 445556779999999999876544
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0036 Score=61.85 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=54.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCC---CcEEEEe-C-ChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEE
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKG---FPISVYN-R-TTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVII 78 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G---~~V~v~d-r-~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIi 78 (474)
+|+||+|+| .|.+|+.+.+.|.+++ ++|..++ + +..+.-.+. +. .+.... ++++ .+. +|+||
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~--~~-----~i~~~~~~~~~-~~~---vDvVf 70 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GK-----TVRVQNVEEFD-WSQ---VHIAL 70 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEET--TE-----EEEEEEGGGCC-GGG---CSEEE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeec--Cc-----eeEEecCChHH-hcC---CCEEE
Confidence 357999999 9999999999999874 3566554 2 221100000 00 112211 1222 234 99999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+|.. ...+.... +++.|..+||.|+..
T Consensus 71 ~a~g~~-~s~~~a~~---~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 71 FSAGGE-LSAKWAPI---AAEAGVVVIDNTSHF 99 (336)
T ss_dssp ECSCHH-HHHHHHHH---HHHTTCEEEECSSTT
T ss_pred ECCCch-HHHHHHHH---HHHcCCEEEEcCCcc
Confidence 999875 33333333 345788999998864
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.044 Score=52.85 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=72.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCc-----chhhhHHHHHHHHhhCCC-C
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCI-----IRAVFLDRIKKAYDRNAD-L 383 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gci-----i~s~ll~~~~~~~~~~~~-l 383 (474)
+.+.++.+|.++|.+.+..+..++|.+.+.++. ++|..+++++|+...+ -+|++.+ .+. +
T Consensus 173 ~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~~~s~~~~--------~~~~~ 238 (296)
T 3qha_A 173 EPGAGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGPGAIMVRD--------NMKDL 238 (296)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCGGGGCCCS--------SCSCC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCcccCHHhh--------chhhh
Confidence 357889999999999999999999999998753 4999999777764222 2343322 111 1
Q ss_pred CCCccChHHHH--HH-HhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011931 384 ANLLVDPEFAK--EI-VDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 428 (474)
Q Consensus 384 ~~ll~~~~~~~--~~-~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~ 428 (474)
.. .++-|.- .+ .-...+++-++..|.+.|+|+|.+.++...|.
T Consensus 239 ~~--~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~ 284 (296)
T 3qha_A 239 EP--DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLA 284 (296)
T ss_dssp CT--TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hc--CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 12 2333432 00 33456788899999999999999999997554
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.014 Score=58.52 Aligned_cols=95 Identities=16% Similarity=0.310 Sum_probs=55.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-CcEE-EEe-C-ChH-HHHHHHHh--------hhhcCCCCccccCCHHHHHhhcC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPIS-VYN-R-TTS-KVDETVER--------AKKEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~-v~d-r-~~~-~~~~l~~~--------~~~~~~~~~~~~~s~~e~~~~l~ 72 (474)
++|||||| .|..|..|.+.|.++- .++. ++. + +.. ++.+.... +..+ ..+... +.++..+.
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~--~~v~~~-~~~~~~~~-- 93 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQD--IVVQEC-KPEGNFLE-- 93 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHT--CBCEES-SSCTTGGG--
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhccccccccccccccc--ceEEeC-chhhhccc--
Confidence 45799999 7999999999888764 3564 442 2 221 22211100 0000 011111 22212344
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+||+|+|.+ ...+....+ ++.|..|||.|+-.
T Consensus 94 -~Dvvf~alp~~-~s~~~~~~~---~~~G~~VIDlSa~f 127 (381)
T 3hsk_A 94 -CDVVFSGLDAD-VAGDIEKSF---VEAGLAVVSNAKNY 127 (381)
T ss_dssp -CSEEEECCCHH-HHHHHHHHH---HHTTCEEEECCSTT
T ss_pred -CCEEEECCChh-HHHHHHHHH---HhCCCEEEEcCCcc
Confidence 99999999976 444444444 45789999999865
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.025 Score=54.25 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=37.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
+++-|+| .|.+|++++..|++.|++|++++|++++.+++.+.
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~ 162 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence 4688999 99999999999999999999999999887776643
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.069 Score=50.88 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=53.2
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...++
T Consensus 32 vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~v~ 91 (277)
T 3gvc_A 32 AIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG-----------------CG---AAACRVDVSDEQQII 91 (277)
T ss_dssp EEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----------------SS---CEEEECCTTCHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----------------Cc---ceEEEecCCCHHHHH
Confidence 44445 7899999999999999999999999988776654321 00 222222334444566
Q ss_pred HHHHHHHhcccCCCEEEecCCC
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+++++.....+=+++|++...
T Consensus 92 ~~~~~~~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 92 AMVDACVAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 6666665555555677776554
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.038 Score=52.20 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=58.4
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+.+| |.+-+|.++|+.|++.|.+|.+.||+++++++..++....+ .++..+ =+.+.
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dv~~~ 70 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------------YDAHGVAFDVTDE 70 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------------CCEEECCCCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCCH
Confidence 67787 68889999999999999999999999988877665432110 122221 13344
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+++.+++++.....+=+++|+....
T Consensus 71 ~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 71 LAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 56777777777766666788876543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.048 Score=51.41 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=56.8
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~~~ 85 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.+ .=+.+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT----------------G---RRALSVGTDITDDA 73 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 455666 678999999999999999999999998877765533110 1 22332 2344445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.....+=+++|++...
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCCS
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 6677777776666566788887643
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.048 Score=50.42 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=36.1
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
..++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 335687887 4899999999999999999999999887766554
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.076 Score=49.80 Aligned_cols=85 Identities=19% Similarity=0.311 Sum_probs=56.8
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|.++|+.|++.|++|.+.+|++++.+++.+.... .. .. ...+-.=+.+...+
T Consensus 8 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~------~~---~~~~~~Dv~~~~~v 70 (257)
T 3imf_A 8 VVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ--------FP------GQ---ILTVQMDVRNTDDI 70 (257)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------ST------TC---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------cC------Cc---EEEEEccCCCHHHH
Confidence 354555 68999999999999999999999999888776654311 00 01 22222334444566
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=+++|++...
T Consensus 71 ~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 71 QKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776665556788887653
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.045 Score=50.62 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=36.7
Q ss_pred CCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 5 ~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
...++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3345688887 5999999999999999999999999887766554
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.011 Score=60.84 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=72.8
Q ss_pred CcEEEEccc----HhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLA----VMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG----~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|+|||++ .+|..+.++|.+.| +.|..+|+..+.+ . ++.++.|++|+.+. +|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~-------G~~~y~sl~~lp~~---~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----Q-------GVKAYKSVKDIPDE---IDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----T-------TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----C-------CEeccCCHHHcCCC---CCEEEEecC
Confidence 469999998 89999999999885 6676666653211 1 36778888888765 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCch--h-----HHHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE--N-----TERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~-----~~~~~~~l~~~g~~~v~ 131 (474)
+. .+.++++++... ... .++-.+.+.++ + .+++.+.++++|+++++
T Consensus 74 ~~-~~~~~v~e~~~~-Gi~-~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 74 KR-FVKDTLIQCGEK-GVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp HH-HHHHHHHHHHHH-TCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred HH-HHHHHHHHHHHc-CCC-EEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 85 677777776653 222 34444444332 2 44555666777888874
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.048 Score=51.31 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKA 83 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~ 83 (474)
.+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... . .++.+ .=+.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~ 67 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTS 67 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCC
Confidence 34566666 789999999999999999999999988776655432100 0 22222 22334
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...++.+++.+.....+=+++|++...
T Consensus 68 ~~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 68 EEAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 445666666666555555788877654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.039 Score=51.67 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=36.7
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeC-ChHHHHHHHH
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVE 48 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~ 48 (474)
|.+....++|-|.| .|.+|..+++.|++.|++|++.+| ++++.+++.+
T Consensus 1 m~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (261)
T 1gee_A 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE 50 (261)
T ss_dssp CCGGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 44333444566665 899999999999999999999999 7776655543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.013 Score=57.05 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=46.5
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp 82 (474)
++|+|.|.| .|.+|+.++..|++.|++|++.+|++++.+.+..... .+.. ..+.+++.+.++++|+||.+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----ECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCC-----EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCe-----EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 346899998 6999999999999999999999998765443321110 0110 1233333333445888887764
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.098 Score=48.87 Aligned_cols=86 Identities=13% Similarity=0.221 Sum_probs=57.1
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~~ 85 (474)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... ... ..+..+..-+ .+..
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~--~~~~~~~~D~~~~~~~ 77 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--------------ETG--RQPQWFILDLLTCTSE 77 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------hcC--CCceEEEEecccCCHH
Confidence 355555 68999999999999999999999999887766543211 000 0133333333 3445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+.....+=+++|++...
T Consensus 78 ~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 78 NCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5667777776666556788887654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.038 Score=56.53 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=66.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHH--HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--C
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV--DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--K 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p 82 (474)
.++|.|||+|..|.+.|+.|++.|++|+++|...... ..+. .+. ++..-....+.++. +|.||++. |
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~-----~~~~g~~~~~~~~~---~d~vV~s~gi~ 75 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV-----ERHTGSLNDEWLMA---ADLIVASPGIA 75 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS-----CEEESSCCHHHHHT---CSEEEECTTSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC-----EEEECCCcHHHhcc---CCEEEeCCCCC
Confidence 3579999999999999999999999999999764321 1222 221 12211212445545 89988873 3
Q ss_pred CC-hhHHHHH-------H--H-HHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 83 AG-APVDETI-------K--T-LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 83 ~~-~~v~~vl-------~--~-l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
+. ..+.... . + +...++...|-|-.|+++-.++.-+...|...|...
T Consensus 76 ~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~ 133 (439)
T 2x5o_A 76 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV 133 (439)
T ss_dssp TTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 22 2222211 0 1 112233334456666776555555667777776543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.11 Score=48.98 Aligned_cols=85 Identities=9% Similarity=0.110 Sum_probs=56.2
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~~ 85 (474)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .... .++.++ =+.+..
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~~~Dv~~~~ 72 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ--------------RFPG---ARLFASVCDVLDAL 72 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HSTT---CCEEEEECCTTCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--------------hcCC---ceEEEEeCCCCCHH
Confidence 355555 78999999999999999999999999887766543211 0000 123322 234445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+.....+=+++|++...
T Consensus 73 ~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 73 QVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp HHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6667777766655556788887654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.037 Score=54.54 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=61.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhc---CCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSI---QKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l---~~~dvIil~vp 82 (474)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+... -+.. ..+..+.+..+ ...|+||-++.
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~---~~~~~~~~~~~~v~~~~~g~g~D~vid~~g 245 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY---VINPFEEDVVKEVMDITDGNGVDVFLEFSG 245 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE---EECTTTSCHHHHHHHHTTTSCEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE---EECCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 469999999999999999988999 9999999999887776554311 0001 12233333221 13788888887
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.... +....+.+.++..++..+.
T Consensus 246 ~~~~----~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 246 APKA----LEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CHHH----HHHHHHHEEEEEEEEECCC
T ss_pred CHHH----HHHHHHHHhcCCEEEEEcc
Confidence 5333 3334445555556666654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.061 Score=50.16 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
+++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+.... .. .++.++ =+.+.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~Dv~~~ 68 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA----------------AG---AKVHVLELDVADR 68 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------------cC---CcEEEEECCCCCH
Confidence 3466665 78999999999999999999999998877665543210 01 222222 23344
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=+++|++...
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 69 QGVDAAVASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666665555455777776543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.055 Score=53.95 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCC--c---EEEEeCChH----HHHHHHHhhhhcC-CC--CccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGF--P---ISVYNRTTS----KVDETVERAKKEG-DL--PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~--~---V~v~dr~~~----~~~~l~~~~~~~~-~~--~~~~~~s~~e~~~~l~~~ 74 (474)
+||+||| +|.+|.+++..|+..+. + |.++|.+.+ +++-..-...+.. .+ ++...++..+..+. +
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~d---a 109 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 109 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCC---C
Confidence 5899999 79999999999998875 2 777655433 2332222111100 00 13344455555555 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
|+||++-..+ .. ++.+...+.....++.+|+..||-
T Consensus 110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 9999975322 11 122223344444577888888873
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.029 Score=52.30 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=56.8
Q ss_pred CCCCCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 1 m~~~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
|....+.++|-|.| .|.+|..+++.|++.|++|.+.+|+ +++.+.+.+.... . -.. ..++.
T Consensus 1 m~~~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~------~~~---~~~~~ 63 (258)
T 3afn_B 1 MFPDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA--------D------GGD---AAFFA 63 (258)
T ss_dssp -CGGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH--------T------TCE---EEEEE
T ss_pred CCcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh--------c------CCc---eEEEE
Confidence 43333334566666 6999999999999999999999998 7766655432210 0 001 12222
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.=+.+...++.+++++.....+=++||++...
T Consensus 64 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 64 ADLATSEACQQLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 22333445666666665555455788887654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.075 Score=49.92 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... +.. . .++.++ =+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~~-~---~~~~~~~~D~~~~ 69 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLK--------------EKF-G---VRVLEVAVDVATP 69 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHH-C---CCEEEEECCTTSH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH--------------Hhc-C---CceEEEEcCCCCH
Confidence 4566666 6899999999999999999999999887765543221 000 1 222222 23333
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~~g~id~lv~~Ag~ 95 (263)
T 3ai3_A 70 EGVDAVVESVRSSFGGADILVNNAGT 95 (263)
T ss_dssp HHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666665555455777776653
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.063 Score=52.78 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=65.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|..|+.+|.+|+..|. +++++|.+.-....+..+.-. ....+..-+....+.+..+. +++-+...+..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~in-P~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF-PLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHC-TTCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence 3589999999999999999999997 788999875221111111000 00000001112222222221 44444444311
Q ss_pred ---------hh--HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 85 ---------AP--VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 85 ---------~~--v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.. ...-.+.+...+..-++|+|++-... +-..+...+...++.++.+.
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~-tR~lin~~c~~~~~plI~aa 171 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE-SRWLPSLLSNIENKTVINAA 171 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG-GGHHHHHHHHHTTCEEEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH-HHHHHHHHHHHcCCcEEEee
Confidence 00 01111223344556789999877653 33344455667788888753
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.11 Score=48.18 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=56.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~~ 85 (474)
++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... .. ....++.+-+ .+..
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~-~~~~~~~~d~d~~~~~ 79 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA---------------GQ-PQPLIIALNLENATAQ 79 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---------------TS-CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---------------CC-CCceEEEeccccCCHH
Confidence 355556 689999999999999999999999998877766543210 00 0023333333 3344
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+.....+=+++|++...
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 80 QYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5666666666655556788887654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.066 Score=51.61 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=56.8
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... . .+..++.+=+.+...+
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~-~~~~~~~~Dv~d~~~v 95 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ----------------G-FDAHGVVCDVRHLDEM 95 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T-CCEEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C-CceEEEEccCCCHHHH
Confidence 466666 688999999999999999999999998877765533210 1 0022233333444556
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++.+.....+=+++|++...
T Consensus 96 ~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 96 VRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCc
Confidence 66666666655555778877654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.16 Score=45.85 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=74.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC-Cccc-cCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL-PLFG-FRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~-~~~~-~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|--||+|. | .++..+++.+.+|+++|.+++.++.+.+.....+.. ++.. ..+..+....+...|+|++....
T Consensus 57 ~~vLDlGcG~-G-~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGS-G-SVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCC-C-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 4788999987 4 355556666899999999999887766543221100 1222 23444433334458999976533
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
..+ +++.+...|++|..++-.+ ..+....+..+.+++.|.....
T Consensus 133 ~~~-~l~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 133 SQA-LYDRLWEWLAPGTRIVANA-VTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp CHH-HHHHHHHHSCTTCEEEEEE-CSHHHHHHHHHHHHHHCSEEEE
T ss_pred cHH-HHHHHHHhcCCCcEEEEEe-cCcccHHHHHHHHHhCCCcEEE
Confidence 345 7888888888877655432 2345666677777777765544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.031 Score=51.65 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=47.8
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEe
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~ 80 (474)
++++|.|.| .|.+|+.+++.|++. |++|++.+|++++.+.+.. . ..+.. ..+.+++.+.++.+|+||.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~-~-----~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-E-----ADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-C-----TTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCC-C-----eeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 456899998 799999999999999 8999999999877654410 0 00111 12333333333448888887
Q ss_pred cC
Q 011931 81 VK 82 (474)
Q Consensus 81 vp 82 (474)
..
T Consensus 77 a~ 78 (253)
T 1xq6_A 77 TS 78 (253)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.069 Score=50.19 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=58.3
Q ss_pred CcEEEEcc-c-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGL-A-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGl-G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+++-|.|. | .+|..+|+.|++.|++|.+.+|+.++.++..+..... .. .+..++..=+.+..
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~-~~~~~~~~Dl~~~~ 86 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL---------------GL-GRVEAVVCDVTSTE 86 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---------------CS-SCEEEEECCTTCHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc---------------CC-CceEEEEeCCCCHH
Confidence 35777898 8 5999999999999999999999998877665533110 00 00222333334445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.....+=+++|++...
T Consensus 87 ~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 87 AVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCc
Confidence 6677777776665556788887654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.055 Score=50.73 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=52.5
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..+.. -.. ...+..=+.+...
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------~~~---~~~~~~Dv~~~~~ 67 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------------GAA---VRFRNADVTNEAD 67 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----------------CCc---eEEEEccCCCHHH
Confidence 3455566 689999999999999999999999987665543211 011 3333333445556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+++.+.....+=+++|++....
T Consensus 68 v~~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 68 ATAALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 7777777766665667888876543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.087 Score=48.36 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=34.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3466665 8999999999999999999999999887766543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.048 Score=51.93 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=55.9
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ...+..=+.+...++
T Consensus 27 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~---~~~~~~Dv~d~~~v~ 89 (279)
T 3sju_A 27 AFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--------------GHD---VDGSSCDVTSTDEVH 89 (279)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--------------TCC---EEEEECCTTCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEECCCCCHHHHH
Confidence 55555 789999999999999999999999998877765533110 000 222222334445666
Q ss_pred HHHHHHHhcccCCCEEEecCCC
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+++++.....+=+++|++...
T Consensus 90 ~~~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 90 AAVAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHcCCCcEEEECCCC
Confidence 6777766655555788877654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.096 Score=45.54 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=72.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhc-CCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDL-PLFGFRDPESFVNSI-QKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l-~~~dvIil~vp~ 83 (474)
.+|.-||+|. | .++..+++. +.+|+++|.+++.++...+.....+.. ++....+..+..... ...|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 4788999997 4 455555555 679999999998887766543221100 122223332222222 458999987665
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
.. ..+++.+...|++|..++-.. ..+.........+...+..+...
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHHCCEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHcCCeeEEE
Confidence 43 567788888888887666433 23345555666677777665543
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=58.89 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=60.7
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
..||-|||. |+.|.+-+..+...|. .|+++|+++.+. +. + .+++ .. +|+||-|+.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~-----~------~~~i-~~---aDivIn~vl 272 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GG-----P------FDEI-PQ---ADIFINCIY 272 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CS-----C------CTHH-HH---SSEEEECCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CC-----c------hhhH-hh---CCEEEECcC
Confidence 458999999 9999999999999998 999999886221 21 1 1333 44 999999998
Q ss_pred CChhHHHHH-HHHHhcc-cCCCEEEecCCC
Q 011931 83 AGAPVDETI-KTLSAYM-EKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~~~v~~vl-~~l~~~l-~~g~iiId~st~ 110 (474)
-+.....++ ++.+..+ ++|.+|||.+.-
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETTCC
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEecC
Confidence 643222222 4555667 899999999754
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.12 Score=47.83 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=33.8
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
+|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466665 7999999999999999999999999887665543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.042 Score=51.97 Aligned_cols=69 Identities=12% Similarity=0.253 Sum_probs=47.3
Q ss_pred cEEEEcc-cHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011931 9 RIGLAGL-AVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp 82 (474)
+|.|.|. |.+|+.++..|++. |++|++.+|++++.+.+...+.. +.. ..+.+++.+.++.+|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT-----VRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe-----EEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788985 99999999999998 99999999998776555432210 111 1234444444555898887764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.087 Score=49.85 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=55.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 72 (271)
T 3tzq_B 13 VAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG-----------------RG---AVHHVVDLTNEVSV 72 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC-----------------TT---CEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------CC---eEEEECCCCCHHHH
Confidence 455566 6899999999999999999999999887766554321 01 22333333444566
Q ss_pred HHHHHHHHhcccCCCEEEecCCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.+++.+.....+=+++|++....
T Consensus 73 ~~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 73 RALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 666666666555567787766543
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.049 Score=53.67 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=31.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcEEE-EeC-ChHHHHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISV-YNR-TTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v-~dr-~~~~~~~l~~ 48 (474)
++||||+|.|.+|+.+.+.|.+++ ++|.. .|+ +++....+.+
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~ 48 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLE 48 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhc
Confidence 358999999999999999998873 56654 455 5555555543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.054 Score=51.53 Aligned_cols=87 Identities=11% Similarity=0.197 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
+++-|.| .|-+|.++|+.|++.|++|.+.+|++++.++..+.....+ . .. .++.++ =+.+.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~-------~~---~~~~~~~~Dv~~~ 75 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG------A-------NG---GAIRYEPTDITNE 75 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC------C-------SS---CEEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------C-------CC---ceEEEEeCCCCCH
Confidence 3455665 7899999999999999999999999988777665432100 0 00 123222 33444
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=+++|++...
T Consensus 76 ~~v~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 76 DETARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56667777776665566788887664
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.035 Score=53.13 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=47.5
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCC-CcEEEEeCChHHHH--HHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKG-FPISVYNRTTSKVD--ETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~--~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~ 80 (474)
+++|.|.|. |.+|+.++..|++.| ++|.+.+|++++.. .+...+. .+.. ..+.+++.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~-----~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGA-----EVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTC-----EEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCC-----EEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 467999996 999999999999998 99999999976542 2222211 0111 12344443334458988887
Q ss_pred cC
Q 011931 81 VK 82 (474)
Q Consensus 81 vp 82 (474)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.051 Score=54.22 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=30.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC---CcEEEE-eC-ChHHHHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVY-NR-TTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr-~~~~~~~l~~ 48 (474)
++||||+|+|.+|+.+.+.|.+++ ++|... |+ +++....+.+
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~ 48 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLE 48 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhc
Confidence 368999999999999999998863 566544 54 5555555543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.069 Score=49.99 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=53.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~~~ 85 (474)
++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... . .++.+ .=+.+..
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----------------G---GHAVAVKVDVSDRD 64 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCHH
Confidence 455665 789999999999999999999999988776654432100 0 12222 2233344
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.....+=+++|++...
T Consensus 65 ~v~~~~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 65 QVFAAVEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666665555455777776643
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.081 Score=48.78 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=59.1
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE-EecCC
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII-MLVKA 83 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi-l~vp~ 83 (474)
.||.+|+|+ |.||+.++......|+++. .+|++.+ . ++ +. +|++| .+.|.
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------~----------~l----~~---~DVvIDFT~P~ 64 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------E----------EL----DS---PDVVIDFSSPE 64 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------E----------EC----SC---CSEEEECSCGG
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------c----------cc----cC---CCEEEECCCHH
Confidence 478999997 9999999887777788865 6676531 0 01 13 89888 55554
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
.+...++.. +..|.-+|..+|+......+..+.+.++ +.++-+|
T Consensus 65 --a~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~ap 108 (228)
T 1vm6_A 65 --ALPKTVDLC---KKYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAY 108 (228)
T ss_dssp --GHHHHHHHH---HHHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECS
T ss_pred --HHHHHHHHH---HHcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 455554433 3457778888888755443344444333 5555454
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.056 Score=49.70 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
++|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3566776 6899999999999999999999999988877654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.1 Score=49.39 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=53.4
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . ...+..=+.+...+
T Consensus 11 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------------~---~~~~~~Dv~d~~~v 69 (270)
T 1yde_A 11 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------------------G---AVFILCDVTQEDDV 69 (270)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------------------T---EEEEECCTTSHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------------------C---CeEEEcCCCCHHHH
Confidence 466665 7899999999999999999999999887765543210 0 11222223334456
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~g~iD~lv~nAg~ 92 (270)
T 1yde_A 70 KTLVSETIRRFGRLDCVVNNAGH 92 (270)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665555555777776653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.12 Score=51.10 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=58.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCC---HHHHHhhc-----CCCcEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRD---PESFVNSI-----QKPRVII 78 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s---~~e~~~~l-----~~~dvIi 78 (474)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+.. .....+ ..++.+.+ ...|+||
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-----~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-----LVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-----EEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-----EEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 479999999999999888888898 899999999988776654431 111111 12222211 2367887
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
-++..... +......+.++..++..+.
T Consensus 248 d~~g~~~~----~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTGAEAS----IQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp ECSCCHHH----HHHHHHHSCTTCEEEECSC
T ss_pred ECCCChHH----HHHHHHHhcCCCEEEEEec
Confidence 77764322 2333445556555655543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.061 Score=50.60 Aligned_cols=85 Identities=9% Similarity=0.087 Sum_probs=56.0
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ..++.+=+.+...+
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~v 93 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--------------GGE---AESHACDLSHSDAI 93 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------TCE---EEEEECCTTCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--------------CCc---eeEEEecCCCHHHH
Confidence 455566 799999999999999999999999998877665533110 001 22222233444456
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=++||++...
T Consensus 94 ~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 94 AAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 66666666555556777777654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.11 Score=49.40 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=55.9
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~ 88 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DD---ALCVPTDVTDPDS 88 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SC---CEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CC---eEEEEecCCCHHH
Confidence 55555 5 7899999999999999999999999888776654321 11 2333333444456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 89 v~~~~~~~~~~~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 89 VRALFTATVEKFGRVDVLFNNAGT 112 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666676666655556777776654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.075 Score=49.68 Aligned_cols=89 Identities=15% Similarity=0.274 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... .....+..++-.=+.+...
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~Dv~~~~~ 73 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRS--------------NKHVQEPIVLPLDITDCTK 73 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH--------------CTTSCCCEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--------------ccccCcceEEeccCCCHHH
Confidence 3455566 689999999999999999999999998887766543110 0000002233333444455
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 74 v~~~~~~~~~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 74 ADTEIKDIHQKYGAVDILVNAAAM 97 (250)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666666555455677776654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.047 Score=51.19 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 68 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA----------------G---GRIVARSLDARNE 68 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----------------T---CEEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CeEEEEECcCCCH
Confidence 4466666 778999999999999999999999998877766543210 0 222222 23444
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++.+... .+=+++|++...
T Consensus 69 ~~v~~~~~~~~~~-g~id~lv~nAg~ 93 (252)
T 3h7a_A 69 DEVTAFLNAADAH-APLEVTIFNVGA 93 (252)
T ss_dssp HHHHHHHHHHHHH-SCEEEEEECCCC
T ss_pred HHHHHHHHHHHhh-CCceEEEECCCc
Confidence 4566666666554 344677776553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.077 Score=49.41 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=56.9
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~~ 85 (474)
++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD----------------G---GTAISVAVDVSDPE 71 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHH
Confidence 456666 689999999999999999999999998877766543210 1 222222 233445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++.+.....+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5666777766666566788887654
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.053 Score=53.44 Aligned_cols=42 Identities=12% Similarity=0.333 Sum_probs=31.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHH---C-CCcEEEE-eC-ChHHHHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAE---K-GFPISVY-NR-TTSKVDETVE 48 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~---~-G~~V~v~-dr-~~~~~~~l~~ 48 (474)
++||||+|.|.+|+.+.+.|.+ + .++|... |+ +++....+.+
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~ 49 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLK 49 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHH
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhc
Confidence 3589999999999999999987 4 5676644 44 4555555553
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.082 Score=54.42 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=66.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
..+|-|+|.|.+|..+|+.|. .+++|.+.++++++++.+.+..... .-+....+..++..+ ++.+|+++.++.++
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~~~--~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~D 311 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELENT--IVFCGDAADQELLTEENIDQVDVFIALTNED 311 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCTTS--EEEESCTTCHHHHHHTTGGGCSEEEECCSCH
T ss_pred ccEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCCCc--eEEeccccchhhHhhcCchhhcEEEEcccCc
Confidence 457999999999999999984 5699999999999999998865321 001222333344332 45599888887765
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
...-+..-++..+....+|.-..+
T Consensus 312 -e~Ni~~~llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 312 -ETNIMSAMLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp -HHHHHHHHHHHHTTCSEEEEECSC
T ss_pred -HHHHHHHHHHHHcCCccccccccc
Confidence 444333445555655566655444
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.037 Score=49.63 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (474)
.+|.|+| .|.+|..+++.+...|.+|++.++++++.+.+.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS 80 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4688999 699999999999999999999999988776554
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=57.98 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=53.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC---cEEEE-eCC-hHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF---PISVY-NRT-TSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~---~V~v~-dr~-~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~l~~~dvIil 79 (474)
+|||+|+| .|.+|+.+.+.|.+.+| ++... +++ ..+.-.+. +. .+.... ++++ .+. +|+||+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~--g~-----~i~~~~~~~~~-~~~---~DvV~~ 74 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA--ES-----SLRVGDVDSFD-FSS---VGLAFF 74 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET--TE-----EEECEEGGGCC-GGG---CSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccC--Cc-----ceEEecCCHHH-hcC---CCEEEE
Confidence 46899999 89999999999987765 44544 432 21100000 00 111111 2222 334 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|+|.. ...+.... +++.|..+||.|...
T Consensus 75 a~g~~-~s~~~a~~---~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 75 AAAAE-VSRAHAER---ARAAGCSVIDLSGAL 102 (340)
T ss_dssp CSCHH-HHHHHHHH---HHHTTCEEEETTCTT
T ss_pred cCCcH-HHHHHHHH---HHHCCCEEEEeCCCC
Confidence 99875 33333333 345688899998765
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.049 Score=55.77 Aligned_cols=110 Identities=14% Similarity=0.269 Sum_probs=76.6
Q ss_pred cCcEEEEccc----------HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011931 7 LTRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 7 ~~~IgiIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
-.+|+|+|+. .-...++..|.+.|.+|.+||+... +...+... ++..+.++.++++. +|.
T Consensus 322 ~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~~-----~~~~~~~~~~~~~~---ad~ 391 (446)
T 4a7p_A 322 GKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKMLT-----DVEFVENPYAAADG---ADA 391 (446)
T ss_dssp TCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGCS-----SCCBCSCHHHHHTT---BSE
T ss_pred CCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhcC-----CceEecChhHHhcC---CCE
Confidence 3589999997 6688999999999999999998753 22221111 25567788888887 999
Q ss_pred EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
|++++..++.-.--++.+...+ ++.+|+|+-+..... .+++.|+.|...+
T Consensus 392 vvi~t~~~~f~~~d~~~~~~~~-~~~~i~D~r~~~~~~------~~~~~g~~y~~iG 441 (446)
T 4a7p_A 392 LVIVTEWDAFRALDLTRIKNSL-KSPVLVDLRNIYPPA------ELERAGLQYTGVG 441 (446)
T ss_dssp EEECSCCTTTTSCCHHHHHTTB-SSCBEECSSCCSCHH------HHHHTTCBCCCSS
T ss_pred EEEeeCCHHhhcCCHHHHHHhc-CCCEEEECCCCCCHH------HHHhcCCEEEEec
Confidence 9999988642111124455545 357899999887432 3456788876554
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.091 Score=48.55 Aligned_cols=85 Identities=8% Similarity=0.144 Sum_probs=54.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+... +. .. .++.++ =+.+.
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~-~~---~~~~~~~~D~~~~ 69 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIA--------------NK-YG---VKAHGVEMNLLSE 69 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH--------------HH-HC---CCEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH--------------hh-cC---CceEEEEccCCCH
Confidence 3466665 7999999999999999999999999887765543221 00 01 222222 23334
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 70 ESINKAFEEIYNLVDGIDILVNNAGI 95 (248)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45666666666555555778877654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.02 Score=54.52 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=34.0
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
++|+|.|.|+|.+|+.++..|++.|++|++.+|++++
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 3578999999999999999999999999999998765
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.077 Score=52.05 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCCCcEEE-EeC--ChHHHHHHHHh
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISV-YNR--TTSKVDETVER 49 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~dr--~~~~~~~l~~~ 49 (474)
|++-..+.||||.|.|++|+.+++.+...|.+|.. .|+ +.+.+..+.+.
T Consensus 1 ~~~~~~~~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~~~a~l~~y 52 (346)
T 3h9e_O 1 MVSVARELTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKY 52 (346)
T ss_dssp -----CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHC
T ss_pred CcccCCeeEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChhHhcccccc
Confidence 56666788999999999999999999888888775 564 56666666654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.13 Score=48.12 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=55.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+..=+.+...
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 69 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD-----------------A---ALAVAADISKEAD 69 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTSHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEecCCCHHH
Confidence 3466676 67899999999999999999999999887776543210 0 1222223344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+...+.+=+++|++...
T Consensus 70 ~~~~~~~~~~~~g~id~li~~Ag~ 93 (261)
T 3n74_A 70 VDAAVEAALSKFGKVDILVNNAGI 93 (261)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCcc
Confidence 666666666555555777776554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.15 Score=45.61 Aligned_cols=116 Identities=9% Similarity=0.041 Sum_probs=73.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.+|--||+|. |. ++..+++.+ .+|+++|.+++.++.+.+.....+..++.. ..+..+....+...|+|++..+..
T Consensus 42 ~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 119 (204)
T 3e05_A 42 LVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG 119 (204)
T ss_dssp CEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT
T ss_pred CEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc
Confidence 4788999986 44 455566655 799999999998877665432211001222 223333333334589999877654
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
....+++.+...|++|..++-... .........+.+.+.|+
T Consensus 120 -~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 120 -MLEEIIDAVDRRLKSEGVIVLNAV-TLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp -CHHHHHHHHHHHCCTTCEEEEEEC-BHHHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHHhcCCCeEEEEEec-ccccHHHHHHHHHHCCC
Confidence 677888888888988876654332 22455566677777885
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.07 E-value=0.025 Score=53.72 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=48.1
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp 82 (474)
|+|.|.|. |.+|+.++..|++. |++|++.+|++++...+...+.. +.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE-----VRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe-----EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 46889985 99999999999998 99999999998776655432210 111 1233444444445888887664
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.12 Score=48.14 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=51.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++ ++.++..+... .. ...+..=+.+..
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~ 67 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLG-----------------RR---VLTVKCDVSQPG 67 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTT-----------------CC---EEEEECCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcC-----------------Cc---EEEEEeecCCHH
Confidence 4566665 78999999999999999999999998 66543211100 00 111222233334
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++...+.+=+++|++...
T Consensus 68 ~v~~~~~~~~~~~g~id~lv~nAg~ 92 (249)
T 2ew8_A 68 DVEAFGKQVISTFGRCDILVNNAGI 92 (249)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665555555777776654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.054 Score=53.83 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=59.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+. +.. .+.-..+.+.+.+.....|+||-++.....
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~----~v~~~~~~~~~~~~~~~~D~vid~~g~~~~ 264 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD----SFLVSRDQEQMQAAAGTLDGIIDTVSAVHP 264 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS----EEEETTCHHHHHHTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc----eEEeccCHHHHHHhhCCCCEEEECCCcHHH
Confidence 479999999999999999999999999999999988776632 221 011112222222212347888888875433
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++..+ +.+.++..++..+.
T Consensus 265 ~~~~~----~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 LLPLF----GLLKSHGKLILVGA 283 (366)
T ss_dssp SHHHH----HHEEEEEEEEECCC
T ss_pred HHHHH----HHHhcCCEEEEEcc
Confidence 34333 34445555665554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.087 Score=49.10 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=53.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.... .. .+..++..=+.+...
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~-~~~~~~~~D~~~~~~ 76 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM----------------EG-HDVSSVVMDVTNTES 76 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT-CCEEEEECCTTCHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC-CceEEEEecCCCHHH
Confidence 3566776 79999999999999999999999998876655432210 00 001222222333345
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=++||++...
T Consensus 77 ~~~~~~~~~~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 77 VQNAVRSVHEQEGRVDILVACAGI 100 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 556666555544445677776653
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.095 Score=48.54 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=54.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.+.... .. -.. ..++..=+.+...
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~------~~~---~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH-------AY------ADK---VLRVRADVADEGD 66 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHST-------TT------GGG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-------hc------CCc---EEEEEecCCCHHH
Confidence 3566776 69999999999999999999999998877665543200 00 011 2222222333445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=++||++...
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag~ 90 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAGI 90 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665555455777776653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.11 Score=49.55 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=56.4
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCC-cEEEEecCCCh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKP-RVIIMLVKAGA 85 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~-dvIil~vp~~~ 85 (474)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+... +.-.. . ..+-.=+.+..
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG--------------GRTGN---IVRAVVCDVGDPD 96 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHHSS---CEEEEECCTTCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------hcCCC---eEEEEEcCCCCHH
Confidence 44444 5 7899999999999999999999999988776654321 11110 1 22222334445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.....+=+++|++...
T Consensus 97 ~v~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 97 QVAALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776666566788887654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.089 Score=48.77 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ...+-.=+.+...+
T Consensus 7 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~~ 69 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--------------GFK---ARGLVLNISDIESI 69 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--------------TCC---EEEEECCTTCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEecCCCHHHH
Confidence 455666 789999999999999999999999998877665433210 000 22232333444567
Q ss_pred HHHHHHHHhcccCCCEEEecCCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.+++++.....+=+++|++....
T Consensus 70 ~~~~~~~~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 70 QNFFAEIKAENLAIDILVNNAGIT 93 (247)
T ss_dssp HHHHHHHHHTTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 777777766555567888876543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.072 Score=50.70 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ...+-.=+.+...+
T Consensus 34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~d~~~v 96 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--------------GGK---ALPIRCDVTQPDQV 96 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--------------TCC---CEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCe---EEEEEcCCCCHHHH
Confidence 455566 789999999999999999999999988877665533210 001 22333334444567
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=+++|++...
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 97 RGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776666566788877654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.17 Score=47.40 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . . ...+-.=+.+...
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~------~---~~~~~~D~~d~~~ 72 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----------N------G---GFAVEVDVTKRAS 72 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT-----------T------C---CEEEECCTTCHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----------c------C---CeEEEEeCCCHHH
Confidence 3566666 7899999999999999999999999887765543210 0 1 2233233344445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 73 v~~~~~~~~~~~g~iD~lv~~Ag~ 96 (263)
T 3ak4_A 73 VDAAMQKAIDALGGFDLLCANAGV 96 (263)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 666666655544445677776553
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.15 Score=52.50 Aligned_cols=114 Identities=13% Similarity=0.231 Sum_probs=76.6
Q ss_pred cCcEEEEcccH----------hHHHHHHHHHHCCCcEEEEeCChH--HHHHHH---------HhhhhcCCCCccccCCHH
Q 011931 7 LTRIGLAGLAV----------MGQNLALNIAEKGFPISVYNRTTS--KVDETV---------ERAKKEGDLPLFGFRDPE 65 (474)
Q Consensus 7 ~~~IgiIGlG~----------mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~---------~~~~~~~~~~~~~~~s~~ 65 (474)
..+|+|+|+.. -...++..|.+.|.+|.+||+.-. ...... .... ++..+.++.
T Consensus 329 ~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 403 (467)
T 2q3e_A 329 DKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSR-----LVTISKDPY 403 (467)
T ss_dssp TCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHH-----HEEECSSHH
T ss_pred CCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccC-----ceeecCCHH
Confidence 35799999875 788999999999999999998632 221111 0000 134556788
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHH-HHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 66 SFVNSIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 66 e~~~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
++++. +|.|++++..+ +.+.. .+.+...+....+|+|+-+.... ..+.+...|+.|...+
T Consensus 404 ~~~~~---ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 404 EACDG---AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIETIG 464 (467)
T ss_dssp HHHTT---CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEETT
T ss_pred HHHhC---CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEEeC
Confidence 88777 99999999886 33321 34555556556669999888643 1223455688887654
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.054 Score=56.72 Aligned_cols=125 Identities=8% Similarity=0.091 Sum_probs=70.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+.-. ....+-.-+....+.+..+. +++-+.+.+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN-p~v~v~~~~~-- 109 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEE-- 109 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC-TTSBCCEESS--
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC-CCCeEEEeCC--
Confidence 589999999999999999999998 899999875333334332100 00000011112233333332 3444444443
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.+..+++.....+..-++||+++-. +..-..+.+.+...++.++.+.+.|
T Consensus 110 ~~~~~~~~~~~~~~~~DvVi~~~d~-~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 110 SPENLLDNDPSFFCRFTVVVATQLP-ESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESCC-HHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CcchhhhhhHHHhcCCCEEEEeCCC-HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 2343333233345556888888543 3344445556667788888775444
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=94.94 E-value=0.15 Score=47.56 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=56.0
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+-+=+.+...+
T Consensus 11 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~v 70 (248)
T 3op4_A 11 VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----------------N---GKGMALNVTNPESI 70 (248)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------------c---ceEEEEeCCCHHHH
Confidence 344555 78999999999999999999999999887766543210 1 12222234444567
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++++.....+=+++|++...
T Consensus 71 ~~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 71 EAVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776666566788887654
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.048 Score=55.13 Aligned_cols=170 Identities=10% Similarity=0.148 Sum_probs=100.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcE-EEEeCC----------hHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRT----------TSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~----------~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~ 72 (474)
++|.|-|.|++|...|+.|.+.|.+| .+.|.+ .+.+.++.+... .+.. .-+.+++...
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g-----~i~~~~a~~~~~~~i~~~-- 294 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFG-----MVTNLFTDVITNEELLEK-- 294 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSS-----CCGGGCSCCBCHHHHHHS--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhC-----CCCCCCcEEecCccceec--
Confidence 57999999999999999999999987 477877 555555443211 1111 1244555442
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC--CCCCcccccCCCccccC
Q 011931 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG--VSGGEEGARHGPSLMPG 150 (474)
Q Consensus 73 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p--vsgg~~~a~~G~~i~~g 150 (474)
.||+.+-|-.... +. .+-.+.+ .-++|+..+|.. .+.+..+.|.++|+.|+..- -.||.
T Consensus 295 ~~DIliPcA~~n~-I~---~~~a~~l-~ak~V~EgAN~p--~t~eA~~iL~~rGI~~~PD~~aNAGGV------------ 355 (424)
T 3k92_A 295 DCDILVPAAISNQ-IT---AKNAHNI-QASIVVERANGP--TTIDATKILNERGVLLVPDILASAGGV------------ 355 (424)
T ss_dssp CCSEEEECSCSSC-BC---TTTGGGC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEECHHHHTTHHH------------
T ss_pred cccEEeecCcccc-cC---hhhHhhc-CceEEEcCCCCC--CCHHHHHHHHHCCCEEECchHhcCCCE------------
Confidence 4999988876542 11 1223334 567888888886 34566778889999887532 22221
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011931 151 GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (474)
Q Consensus 151 g~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~ 225 (474)
.-..++.++.+ .. ..+- ..-+...+...+...+.+.+..+++.+ ++..+...+
T Consensus 356 -~vS~~E~~qn~----~~--------~~w~--------~eeV~~~l~~~m~~~~~~v~~~a~~~~-~~~~~aA~~ 408 (424)
T 3k92_A 356 -TVSYFEWVQNN----QG--------YYWS--------EEEVAEKLRSVMVSSFETIYQTAATHK-VDMRLAAYM 408 (424)
T ss_dssp -HHHHHHHHHHH----HT--------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHH
T ss_pred -EeehhHHHhcc----cc--------cCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHH
Confidence 11122322221 11 0110 123444455556666777888888888 887665544
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.019 Score=53.30 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.1
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
|++|-|.| .|.+|..++..|++.|++|++.+|++++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~ 37 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQAD 37 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 34688887 4999999999999999999999998754
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.03 Score=55.91 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=52.9
Q ss_pred cCcEEEEc-ccHhHHHHHH-HHHHCCC---cEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAG-LAVMGQNLAL-NIAEKGF---PISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~-~L~~~G~---~V~v~dr-~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|+||||+| .|.+|+.+.+ .|.++.+ .+..+.. +..+ .+...... ...+....+++++ +. +|+||.|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~g~--~i~~~~~~~~~~~-~~---~DvVf~a 72 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFGGT--TGTLQDAFDLEAL-KA---LDIIVTC 72 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGGTC--CCBCEETTCHHHH-HT---CSEEEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccCCC--ceEEEecCChHHh-cC---CCEEEEC
Confidence 56999999 9999999999 5555554 3333332 2211 11000000 0012222245554 44 9999999
Q ss_pred cCCChhHHHHHHHHHhcccCCC--EEEecCCC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGD--CIIDGGNE 110 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~--iiId~st~ 110 (474)
+|.. ...+....+. +.|. +|||.|+.
T Consensus 73 ~g~~-~s~~~a~~~~---~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 73 QGGD-YTNEIYPKLR---ESGWQGYWIDAASS 100 (367)
T ss_dssp SCHH-HHHHHHHHHH---HTTCCCEEEECSST
T ss_pred CCch-hHHHHHHHHH---HCCCCEEEEcCChh
Confidence 9965 3444444433 4564 99999876
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.91 E-value=0.071 Score=50.34 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=56.8
Q ss_pred CCCCCCcCcEEEEc---ccHhHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcE
Q 011931 1 MVEGKQLTRIGLAG---LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 1 m~~~~~~~~IgiIG---lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|+...+.+++-|.| .|.+|..+|+.|++.|++|.+.+|++++. +++.+.. . .. ...
T Consensus 1 Mm~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~------~~---~~~ 60 (269)
T 2h7i_A 1 MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-----------P------AK---APL 60 (269)
T ss_dssp -CCTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-----------S------SC---CCE
T ss_pred CccccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-----------C------CC---ceE
Confidence 43333334577778 58999999999999999999999997653 3332210 0 01 333
Q ss_pred EEEecCCChhHHHHHHHHHhccc---CCCEEEecCCCC
Q 011931 77 IIMLVKAGAPVDETIKTLSAYME---KGDCIIDGGNEW 111 (474)
Q Consensus 77 Iil~vp~~~~v~~vl~~l~~~l~---~g~iiId~st~~ 111 (474)
+..=+.+...++.+++++..... +=+++|++....
T Consensus 61 ~~~Dv~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~ 98 (269)
T 2h7i_A 61 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM 98 (269)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCC
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCCceEEEECCccC
Confidence 43344455566777776665543 336777776543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.089 Score=51.20 Aligned_cols=88 Identities=9% Similarity=0.112 Sum_probs=56.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... ... .. ..++.+=+.+...
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~--------~~~----~~---~~~~~~Dl~~~~~ 73 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAE--------GSG----PE---VMGVQLDVASREG 73 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------TCG----GG---EEEEECCTTCHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------CCC----Ce---EEEEECCCCCHHH
Confidence 3566776 689999999999999999999999998887766533110 000 01 2222223344456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|++...
T Consensus 74 v~~~~~~~~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 74 FKMAADEVEARFGPVSILCNNAGV 97 (319)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666776666554444677776653
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.13 Score=48.61 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=54.5
Q ss_pred CcEEEE-c-ccHhHHHHHHHHHHCCCcEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecC
Q 011931 8 TRIGLA-G-LAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVK 82 (474)
Q Consensus 8 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp 82 (474)
+|+.+| | .|.+|..+|+.|++.|++|.+. +|+++..+.+.+.... .. .++.++ =+.
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~----------------~~---~~~~~~~~Dl~ 86 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE----------------SG---GEAVAIPGDVG 86 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----------------TT---CEEEEEECCTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh----------------cC---CcEEEEEcCCC
Confidence 344455 4 7999999999999999999765 8888777665543211 01 233333 233
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+...++.+++++.....+=+++|++...
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~li~nAg~ 114 (272)
T 4e3z_A 87 NAADIAAMFSAVDRQFGRLDGLVNNAGI 114 (272)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 4455667777776655555788887654
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.08 Score=55.89 Aligned_cols=125 Identities=14% Similarity=0.022 Sum_probs=65.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.- .....+..-+....+.+..+. +++-+.+.+..
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN-P~V~v~~~~~~ 404 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF-PLMDATGVKLS 404 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC-TTCEEEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC-CCcEEEEeecc
Confidence 3589999999999999999999997 78999987521111111100 000000001112222222221 44444444310
Q ss_pred ---------hhHHHHH--HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 85 ---------APVDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 85 ---------~~v~~vl--~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
...+..+ +.+...+..-++|||++-... .-..+...+...++.++.+.
T Consensus 405 Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~-tR~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 405 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE-SRWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp CCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGG-GTHHHHHHHHHTTCEEEEEE
T ss_pred ccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHH-HHHHHHHHHHHcCCeEEEEE
Confidence 0001111 223334456689999876643 32344455566788887753
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=57.75 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=35.5
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDET 46 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 46 (474)
+||+|.|.| .|.+|+.++..|++. |++|++.+|++++...+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence 457899999 799999999999998 99999999998765443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.16 Score=47.36 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=54.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 65 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----------------DA---ARYQHLDVTIEED 65 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---eeEEEecCCCHHH
Confidence 3566776 6899999999999999999999999887765543210 01 1222222333445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~g~iD~lv~nAg~ 89 (254)
T 1hdc_A 66 WQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555455777776654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.15 Score=48.35 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=53.4
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|.++|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...+
T Consensus 29 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~v 88 (277)
T 4dqx_A 29 VCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG-----------------SK---AFGVRVDVSSAKDA 88 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---eEEEEecCCCHHHH
Confidence 344555 7899999999999999999999999888776654321 00 11122223344456
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++.+.....+=+++|++...
T Consensus 89 ~~~~~~~~~~~g~iD~lv~nAg~ 111 (277)
T 4dqx_A 89 ESMVEKTTAKWGRVDVLVNNAGF 111 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 66666665555555777776653
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.14 Score=48.42 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=54.9
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...+
T Consensus 29 ~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~v 88 (266)
T 3grp_A 29 KALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG-----------------KD---VFVFSANLSDRKSI 88 (266)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------------SS---EEEEECCTTSHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---eEEEEeecCCHHHH
Confidence 344445 7899999999999999999999999888776544221 00 12222223444566
Q ss_pred HHHHHHHHhcccCCCEEEecCCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+.+++.+.....+=+++|++....
T Consensus 89 ~~~~~~~~~~~g~iD~lvnnAg~~ 112 (266)
T 3grp_A 89 KQLAEVAEREMEGIDILVNNAGIT 112 (266)
T ss_dssp HHHHHHHHHHHTSCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 666666666555557888876653
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.04 Score=54.22 Aligned_cols=98 Identities=13% Similarity=0.241 Sum_probs=54.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEEEE-eC-ChHHHHHHHHhhhhcCC----------------CCcccc--CCHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVY-NR-TTSKVDETVERAKKEGD----------------LPLFGF--RDPE 65 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~-dr-~~~~~~~l~~~~~~~~~----------------~~~~~~--~s~~ 65 (474)
|+||||+|.|.+|+.+.+.|.++ .++|... |+ +++....+.+.....|. ..+... .+++
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE 80 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChh
Confidence 46899999999999999999876 3566544 54 44455455432110000 011111 1343
Q ss_pred HHH-hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCC--EEEecCC
Q 011931 66 SFV-NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD--CIIDGGN 109 (474)
Q Consensus 66 e~~-~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 109 (474)
++- .. ..+|+||.|+|.....+ ... .+++.|. +|||.+.
T Consensus 81 ~i~w~~-~~vDvV~~atg~~~s~e-~a~---~~l~~Gak~vVId~pa 122 (334)
T 3cmc_O 81 NLAWGE-IGVDIVVESTGRFTKRE-DAA---KHLEAGAKKVIISAPA 122 (334)
T ss_dssp GCCTGG-GTCCEEEECSSSCCBHH-HHT---HHHHTTCSEEEESSCC
T ss_pred hcCccc-CccCEEEECCCchhhHH-HHH---HHHHCCCCEEEEeCCC
Confidence 331 10 03788888888764332 222 2344566 8888765
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.12 Score=48.70 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=55.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.+.... .-.. ..++..=+.+...
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~Dl~~~~~ 94 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG--------------LGAK---VHTFVVDCSNRED 94 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------TTCC---EEEEECCTTCHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh--------------cCCe---EEEEEeeCCCHHH
Confidence 3566776 78999999999999999999999998877665443210 0000 1222222334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=++||++...
T Consensus 95 v~~~~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 95 IYSSAKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCCcEEEECCCc
Confidence 666666666555555788887654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.16 Score=48.18 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=55.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~~ 85 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|+.++.++..+... +.. . .++.++ =+.+..
T Consensus 29 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~-~---~~~~~~~~Dv~~~~ 90 (277)
T 4fc7_A 29 VAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLA--------------GAT-G---RRCLPLSMDVRAPP 90 (277)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH--------------HHH-S---SCEEEEECCTTCHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------Hhc-C---CcEEEEEcCCCCHH
Confidence 355555 6789999999999999999999999887766554321 000 1 223322 234445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.....+=+++|++...
T Consensus 91 ~v~~~~~~~~~~~g~id~lv~nAg~ 115 (277)
T 4fc7_A 91 AVMAAVDQALKEFGRIDILINCAAG 115 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcC
Confidence 6667777776666566788887653
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.12 Score=49.14 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=53.7
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCCcEEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+-|.| .|-+|..+|+.|++.|++|.+.++ ++++.+++.+..... -.. ...+..=+.+...+
T Consensus 32 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dv~d~~~v 94 (280)
T 4da9_A 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL--------------GAR---VIFLRADLADLSSH 94 (280)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--------------TCC---EEEEECCTTSGGGH
T ss_pred EEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--------------CCc---EEEEEecCCCHHHH
Confidence 45555 789999999999999999999985 676666554432110 000 22222234455567
Q ss_pred HHHHHHHHhcccCCCEEEecCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.+++.+.....+=+++|++...
T Consensus 95 ~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 95 QATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 77777776666556778777654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.093 Score=49.19 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=55.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~~~ 85 (474)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.+ .=+.+..
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d~~ 74 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA----------------G---GKAIGLECNVTDEQ 74 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 344455 789999999999999999999999998877665532110 1 22222 2334445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++.+++++.....+=+++|++...
T Consensus 75 ~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 75 HREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6667777666665556788876654
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.16 Score=47.51 Aligned_cols=87 Identities=14% Similarity=0.228 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... +.... .+..++..=+.+...
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~D~~~~~~ 72 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA--------------SLVSG-AQVDIVAGDIREPGD 72 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHSTT-CCEEEEECCTTCHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hcCCC-CeEEEEEccCCCHHH
Confidence 3566666 7899999999999999999999999887766544221 00000 001222222334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++..... =+++|++...
T Consensus 73 v~~~~~~~~~~~g-id~lv~~Ag~ 95 (260)
T 2z1n_A 73 IDRLFEKARDLGG-ADILVYSTGG 95 (260)
T ss_dssp HHHHHHHHHHTTC-CSEEEECCCC
T ss_pred HHHHHHHHHHhcC-CCEEEECCCC
Confidence 6666666655444 4677776653
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.12 Score=51.79 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=64.3
Q ss_pred CcEEEEcccHhHHH-HHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CC-------CCcccc-CCHHHHHhhcCCC
Q 011931 8 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSKVDETVERAKKE----GD-------LPLFGF-RDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----~~-------~~~~~~-~s~~e~~~~l~~~ 74 (474)
||+-.+|+|++|++ ++..|.+.|++|+..|++...++.+.+++.-. |. .+++.. ...+++++.+..+
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a 80 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV 80 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence 68889999999977 45667789999999999999999988764210 00 012221 1223444444459
Q ss_pred cEEEEecCCChhHHHHHHHHHhcc--------cCCCEEEecCCCC
Q 011931 75 RVIIMLVKAGAPVDETIKTLSAYM--------EKGDCIIDGGNEW 111 (474)
Q Consensus 75 dvIil~vp~~~~v~~vl~~l~~~l--------~~g~iiId~st~~ 111 (474)
|+|.+++.+. ..+.+...|...| .++-+|+.|=|..
T Consensus 81 dlitT~vG~~-~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~ 124 (382)
T 3h2z_A 81 DLVTTAVGPV-VLERIAPAIAKGLVKRKEQGNESPLNIIACENMV 124 (382)
T ss_dssp SEEEECCCHH-HHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSST
T ss_pred CEEEECCCcc-cHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCcc
Confidence 9988888753 4444433332222 2445677777765
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.12 Score=48.13 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~~ 84 (474)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.+ .=+.+.
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~ 64 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG----------------------KKARAIAADISDP 64 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEECCCCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEcCCCCH
Confidence 3466666 6899999999999999999999999988776654321 11111 112333
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=+++|++...
T Consensus 65 ~~v~~~~~~~~~~~g~id~lv~nAg~ 90 (247)
T 3rwb_A 65 GSVKALFAEIQALTGGIDILVNNASI 90 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 45666666666655555777776654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.1 Score=49.39 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP-----------------DR---AEAISLDVTDGER 65 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT-----------------TT---EEEEECCTTCHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------CC---ceEEEeeCCCHHH
Confidence 3455555 6999999999999999999999999887766554211 01 2233333444456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=++||++...
T Consensus 66 ~~~~~~~~~~~~g~id~lv~~Ag~ 89 (281)
T 3m1a_A 66 IDVVAADVLARYGRVDVLVNNAGR 89 (281)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666666555555788877654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.092 Score=48.26 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=53.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
+++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+.... + .. .++.++. +.+.
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------------~--~~---~~~~~~~~D~~~~ 64 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ-------------E--QG---VEVFYHHLDVSKA 64 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------------H--HC---CCEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------------h--cC---CeEEEEEeccCCH
Confidence 3466666 68899999999999999999999999887766543210 0 01 2333322 3333
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++++.....+=+++|++...
T Consensus 65 ~~v~~~~~~~~~~~g~id~li~~Ag~ 90 (235)
T 3l77_A 65 ESVEEFSKKVLERFGDVDVVVANAGL 90 (235)
T ss_dssp HHHHHHCC-HHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 44555555555444455677776554
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.18 Score=50.69 Aligned_cols=98 Identities=5% Similarity=-0.030 Sum_probs=59.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhc---CCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSI---QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l---~~~dvIil~v 81 (474)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+... +.- ..+..+.+..+ ...|+||-++
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~----vi~~~~~~~~~~i~~~t~g~g~D~vid~~ 290 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH----VIDPTKENFVEAVLDYTNGLGAKLFLEAT 290 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE----EECTTTSCHHHHHHHHTTTCCCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE----EEcCCCCCHHHHHHHHhCCCCCCEEEECC
Confidence 479999999999998888888999 8999999999988776655321 110 11222222221 1377888777
Q ss_pred CCCh-hHHHHHHHHHhcccCCCEEEecCC
Q 011931 82 KAGA-PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 82 p~~~-~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.... .....++.+...+.++-.++..+.
T Consensus 291 g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 291 GVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp SCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 6542 122222222122256666665554
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.17 Score=50.12 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=65.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|..|+.++.+|+..|. +++++|.+.-....+..+.-. ....+-.-+....+.+..+. +++-+.+.+..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN-SEISVSEIALN 196 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TTSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC-CCCeEEEeecc
Confidence 3579999999999999999999997 799999874222111111000 00000000111222222211 34444443322
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
-.-+. .+.. +..-++|||++-.....-..+.+.+...++.++.+.+.|
T Consensus 197 i~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 197 INDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CCSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred cCchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 10000 1223 566789999775543233344566667788888765543
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.1 Score=51.14 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=55.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC---CCcEEEE-eC-ChHHHHHHHHhhhhcCCC----------------Ccccc--CCH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK---GFPISVY-NR-TTSKVDETVERAKKEGDL----------------PLFGF--RDP 64 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~---G~~V~v~-dr-~~~~~~~l~~~~~~~~~~----------------~~~~~--~s~ 64 (474)
.||||+|.|.+|+.+.+.|.++ .++|... |+ +++....+.+.....|.+ .+... .++
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 3799999999999999999876 3677644 54 455555444221111000 11121 144
Q ss_pred HHH-HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCC--EEEecCC
Q 011931 65 ESF-VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD--CIIDGGN 109 (474)
Q Consensus 65 ~e~-~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 109 (474)
+++ ... ..+|+||.|+|.....+ ... .+++.|. +|||.+.
T Consensus 81 ~~l~w~~-~~vDvV~~atg~~~s~e-~a~---~~l~aGakkvVId~~a 123 (332)
T 1hdg_O 81 SKLPWKD-LGVDFVIESTGVFRNRE-KAE---LHLQAGAKKVIITAPA 123 (332)
T ss_dssp GGSCHHH-HTCCEEEECSSSCCBHH-HHT---HHHHTTCSEEEESSCC
T ss_pred HHCcccc-cCCCEEEECCccchhHH-HHH---HHHHcCCcEEEEeCCC
Confidence 443 110 02888888888774433 222 2344566 8888765
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.21 Score=46.41 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=53.9
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.. . ...+..=+.+...
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------------~---~~~~~~D~~~~~~ 63 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------------------G---AHPVVMDVADPAS 63 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------------------T---CEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------------------C---CEEEEecCCCHHH
Confidence 3566676 789999999999999999999999988766554311 0 1222222334445
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~g~id~lvn~Ag~ 87 (245)
T 1uls_A 64 VERGFAEALAHLGRLDGVVHYAGI 87 (245)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555555777776653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.05 Score=53.40 Aligned_cols=95 Identities=11% Similarity=0.188 Sum_probs=58.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh-cCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS-IQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~-l~~~dvIil~vp~~~ 85 (474)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+... -+.. ..+..+.+.. ....|+||.++..+.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~---~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~ 244 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEV---AVNARDTDPAAWLQKEIGGAHGVLVTAVSPK 244 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE---EEETTTSCHHHHHHHHHSSEEEEEESSCCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCE---EEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH
Confidence 4699999999999999888889999999999999988776654321 0000 1122222211 113677777765443
Q ss_pred hHHHHHHHHHhcccCCCEEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (474)
. ++.....+.++..++..+.
T Consensus 245 ~----~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 245 A----FSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp H----HHHHHHHEEEEEEEEECSC
T ss_pred H----HHHHHHHhccCCEEEEeCC
Confidence 2 3333444555555555543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.14 Score=47.95 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .. .++.++ =+.+.
T Consensus 10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~~ 70 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS----------------KG---FKVEASVCDLSSR 70 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CEEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEEcCCCCH
Confidence 3466666 78999999999999999999999998877665443210 01 222222 23333
Q ss_pred hhHHHHHHHHHhcc-cCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYM-EKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l-~~g~iiId~st~ 110 (474)
..++.+++.+.... .+=+++|++...
T Consensus 71 ~~~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 71 SERQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 45666666666555 445777776653
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.072 Score=52.26 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=54.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEEE-eC-ChHHHHHHHHhhhhcCCC---------Cc-------cc--cCCHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVY-NR-TTSKVDETVERAKKEGDL---------PL-------FG--FRDPE 65 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~-dr-~~~~~~~l~~~~~~~~~~---------~~-------~~--~~s~~ 65 (474)
|.||||+|.|.+|+.+.+.|.++. .+|... |+ +++....+.+.....+.+ .+ .. ..+++
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 80 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChh
Confidence 358999999999999999998764 466544 54 344444333321100000 01 01 12344
Q ss_pred HHH---hhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 66 SFV---NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 66 e~~---~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++- .. +|+||.|+|.....+ ... .+++.|..+||.|.-.
T Consensus 81 ~i~w~~~~---vDvVf~atg~~~s~e-~a~---~~l~~GakvVdlSa~~ 122 (330)
T 1gad_O 81 NLKWDEVG---VDVVAEATGLFLTDE-TAR---KHITAGAKKVVMTGPS 122 (330)
T ss_dssp GGCHHHHT---CSEEEECSSSCCSHH-HHT---HHHHTTCSEEEESSCC
T ss_pred hCcccccc---CCEEEECCCccccHH-HHH---HHHHCCCEEEEECCCC
Confidence 321 23 788888888764332 222 2345677777776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 474 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-125 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 1e-113 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 1e-30 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 2e-30 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 1e-21 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-20 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 2e-16 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 9e-11 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 2e-06 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 3e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.001 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 364 bits (935), Expect = e-125
Identities = 142/296 (47%), Positives = 187/296 (63%), Gaps = 18/296 (6%)
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243
G+G+FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ F EWNK EL SFLIEITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------EE 290
I +D G +L+ K+ D G KGTGKWT A + V I +E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 291 RVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 350
R++A+K K DK+ ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 120 RIQASKKLKGPQ---NIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTL 176
Query: 351 KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 410
G +A +W+GGCIIR+VFL +IK A+DRN L NLL+D F + + Q +WRR +
Sbjct: 177 NYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTG 236
Query: 411 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 465
+ +GI P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 237 VQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 292
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 333 bits (854), Expect = e-113
Identities = 88/303 (29%), Positives = 146/303 (48%), Gaps = 22/303 (7%)
Query: 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW-NKGELLSFLIEIT 242
G+G+ VKM HN EY +Q+ E +D+L+++G L N+E+ V +W +K L S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI-------------E 289
KD G YL + V+D+ G KGTG W+ Q+A ++ V AP++
Sbjct: 60 IAAARAKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKT 118
Query: 290 ERVEAAKVFK--SGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKG 347
ER A + G I + ++ + I YAQ +R
Sbjct: 119 ERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHN 178
Query: 348 WDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407
+ L L ++ GCI++ L + +A+++N +++NL+ F EI +R +V
Sbjct: 179 FGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLM--CAFQTEIRAGLQNYRDMV 236
Query: 408 CL-AINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEW 465
L +S P +S+SL Y + L LV QRD FG H YER+D +G +W
Sbjct: 237 ALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQW 296
Query: 466 FKI 468
++
Sbjct: 297 PEL 299
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 114 bits (286), Expect = 1e-30
Identities = 82/179 (45%), Positives = 112/179 (62%), Gaps = 4/179 (2%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESF 67
+G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++ A L F E+F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
S++KPR ++LV+AGA D TI+ L EKGD ++D GN +++ RR + + GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
+LGMG+SGGEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT GSG
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMN---GSG 178
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 114 bits (285), Expect = 2e-30
Identities = 82/172 (47%), Positives = 112/172 (65%), Gaps = 2/172 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + K + G E V
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMV 61
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G+L
Sbjct: 62 SKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL 121
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYV 180
++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V
Sbjct: 122 FVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWV 173
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 89.2 bits (220), Expect = 1e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)
Query: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESF 67
+I GL MG +A N+ + G+ ++V++ S VD V R
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA-------GASAARSARDA 54
Query: 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127
V ++ + + L A++ G +++ + + A E GL
Sbjct: 55 VQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114
Query: 128 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQV 170
L VSGG GA G + M GG EA + + + +
Sbjct: 115 AMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 86.0 bits (212), Expect = 2e-20
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL +MG+ ++ N+ + G+ + V +R + + + +
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTA----------K 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
++ VII ++ V E + + G +ID + + A+
Sbjct: 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK 111
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQV 170
G+ L VSGGE A G S+M GG + D++ +A V
Sbjct: 112 GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 74.2 bits (181), Expect = 2e-16
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++ GL MG +A ++A + FP V+NRT K E +
Sbjct: 2 KVAFIGLGAMGYPMAGHLA-RRFPTLVWNRTFEKALRHQEEFG-----------SEAVPL 49
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ + RVI + V E + L Y+ +G +D + E + R + + E G+
Sbjct: 50 ERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
Query: 129 YLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGP 175
YL VSGG GA G ++M GG EA + + L A +V GP
Sbjct: 110 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGP 156
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 57.9 bits (139), Expect = 9e-11
Identities = 19/148 (12%), Positives = 37/148 (25%), Gaps = 15/148 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
R+G G + Q LA + +G + S R +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETS----------E 51
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ V+I V G + + +D N E + + G
Sbjct: 52 EDVYSCPVVISAVTPGVALGAARRAGRHV---RGIYVDINNISPETVRMASSLIEKGG-- 106
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAY 156
++ + G ++ G
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAEE 134
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 45.9 bits (107), Expect = 2e-06
Identities = 21/170 (12%), Positives = 54/170 (31%), Gaps = 17/170 (10%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GL ++G +LA ++ +G + +R S ++ VE + +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE---------RQLVDEAGQDL 52
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ +Q ++I + + K + + + +G
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGH 112
Query: 129 YLGMGVSGGEEGARHGP--------SLMPGGSFEAYKYIEDILLKVAAQV 170
+ + G +GA + E + +L + ++
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKI 162
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 7/162 (4%), Positives = 32/162 (19%), Gaps = 18/162 (11%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
+ G + + + ++ + +R+ + E +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+ + + + G + ++
Sbjct: 62 IVPDRYIKTVA------------NHLNLGDAVLVHCSGFLSSEIFKKSGRASIH-----P 104
Query: 130 LGMGVSGGEEGARH-GPSLMPGGSFEAYKYIEDILLKVAAQV 170
S + G ++ I +++ +
Sbjct: 105 NFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 37.6 bits (86), Expect = 0.001
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL-----PLFGFRD 63
+ GL G A +A KG + ++ ++ E +R +
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 64 PESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCII 105
+++ VI+++V A +++Y+ +G II
Sbjct: 63 TSDIGLAVKDADVILIVVPAIH-HASIAANIASYISEGQLII 103
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 474 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.95 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.93 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.87 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.87 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.75 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.75 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.72 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.65 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.58 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.56 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.55 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.47 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.45 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.43 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.38 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.37 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.35 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.35 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.32 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.26 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.15 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.97 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.95 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.92 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.89 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.85 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.84 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.78 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.73 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.7 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.68 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.66 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.64 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.64 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.48 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.4 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.35 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.34 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.26 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.25 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.25 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.23 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.2 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.17 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.15 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.14 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.12 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.11 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.09 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.01 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.01 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.0 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.98 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.89 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.88 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.88 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.87 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.86 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.84 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.81 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.8 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.78 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.76 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.72 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.71 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.64 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.63 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.63 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.63 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.62 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.61 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.54 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.52 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.52 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.48 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.42 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.41 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.4 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.4 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.39 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.36 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.32 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.28 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.27 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.27 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.23 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.21 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.2 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.2 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.18 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.15 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.14 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.13 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.09 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.08 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.08 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.06 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.05 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.97 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.95 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.94 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.86 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.79 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.77 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.77 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.75 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.61 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.6 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.57 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.55 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.49 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.49 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.48 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.48 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.43 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.42 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.41 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 96.41 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.38 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.34 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.29 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.27 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.25 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.24 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.2 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.17 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 96.14 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.14 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.09 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.09 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.07 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.07 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.05 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 96.05 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 96.04 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 96.01 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.97 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.97 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.95 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 95.94 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.92 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.88 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.88 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.85 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.84 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.83 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.82 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.8 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.8 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.79 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 95.75 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.74 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.73 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.68 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.67 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.65 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.6 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.58 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.53 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.51 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.45 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 95.44 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.43 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.43 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.42 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.39 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.37 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 95.3 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.28 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 95.23 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.23 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.23 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.21 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.19 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.18 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.18 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.09 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.08 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.06 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.05 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.99 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.99 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.97 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.96 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.86 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.78 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.71 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.65 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 94.65 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.61 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.59 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.59 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.56 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 94.53 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.49 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.47 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.45 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.36 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.3 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 94.3 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.3 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.3 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.24 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.22 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.2 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.2 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.13 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.05 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.05 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.04 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 94.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 93.96 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.94 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.94 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.92 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.87 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.78 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.7 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.7 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.65 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.57 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.56 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.46 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.34 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.34 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 93.33 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.28 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.25 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 93.1 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 93.09 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.06 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.02 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.99 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.92 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.78 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 92.75 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 92.67 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.5 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.46 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.4 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.34 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 92.33 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 92.21 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 92.15 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.13 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.09 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.08 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 92.0 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 91.9 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.88 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 91.85 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 91.84 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 91.62 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 91.6 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.44 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 91.41 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 91.37 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.34 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.25 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.01 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.98 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 90.96 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.89 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.67 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 90.54 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 90.51 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 90.45 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 90.34 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 90.03 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 89.9 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 89.81 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 89.79 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 89.72 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 89.42 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.32 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.91 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.9 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 88.53 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 88.46 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 88.25 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.22 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 88.09 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.08 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 87.77 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 87.77 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 87.37 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 87.31 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.04 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 86.99 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.92 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 86.88 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 86.8 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.68 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 86.58 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 86.48 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.34 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.09 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 84.97 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 84.67 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 84.57 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 84.56 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 84.54 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 84.44 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 84.37 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 84.36 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 84.3 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.26 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 84.13 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 84.11 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 83.87 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 83.71 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.48 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 83.43 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 83.41 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.24 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 83.23 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 83.17 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 82.93 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.79 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 82.64 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 82.62 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 82.61 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 82.49 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 82.49 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.35 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 82.25 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 82.18 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 82.13 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 81.98 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 81.98 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 81.93 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 81.88 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 81.79 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 81.67 | |
| d2arka1 | 184 | Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | 81.11 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 81.02 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 81.01 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 80.74 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.41 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=5.9e-76 Score=569.07 Aligned_cols=282 Identities=50% Similarity=0.870 Sum_probs=264.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~ 263 (474)
|+||+||||||+|+|++||+++|++.++++..|++++++.++|+.|+.+.++||+++++.++++.+|+ ...+.+|.|.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 79999999999999999999999999999863499999999999999999999999999999987763 34589999999
Q ss_pred hcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 011931 264 KTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKIC 330 (474)
Q Consensus 264 ~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 330 (474)
.++|||||+|++++|.++|||+|++ ++|+++++.++++... ....+...|+++||+|++|++|+
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~---~~~~~~~~~i~~l~~al~~~~i~ 156 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI---PFEGDKKSFLEDIRKALYASKII 156 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC---CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC---CCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7788888988766431 13446788999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHHHHH
Q 011931 331 SYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLA 410 (474)
Q Consensus 331 ~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v~~a 410 (474)
+|+|||+||++++++|+|++|+.+|+++||+||||||+||+.+.++|++++++.|+++++.|.+.+.+..+.|||+|..|
T Consensus 157 syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v~~a 236 (297)
T d2pgda1 157 SYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTG 236 (297)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHhhcCCCchhHHHHHHhhccCCccceeccCCCcc-ccccccCC
Q 011931 411 INSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEWFKIA 469 (474)
Q Consensus 411 ~~~gip~p~~~~al~y~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~-h~~w~~~~ 469 (474)
++.|+|+|++++||+||++++++++|+|+|||||||||+|||+|+|++|.| |++|++++
T Consensus 237 i~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~~ 296 (297)
T d2pgda1 237 VQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 296 (297)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSC
T ss_pred HHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999985 99998754
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=7e-74 Score=556.65 Aligned_cols=280 Identities=30% Similarity=0.542 Sum_probs=251.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcc-CcchhhhHhhhcccccccccCCCcchHHHHh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVL 262 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~-~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~ 262 (474)
|+||+||||||+|+|++||+++|++.+++..+ ++.+++.++|+.|+. +.+.|||++++.++++.+|+ .+.+++|.|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~-~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~-~g~~l~d~I~ 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDK-DGSYLTEHVM 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCT-TSSBGGGGBC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCC-CCchhHHHhc
Confidence 79999999999999999999999999999887 999999999999965 57999999999999987764 4568999999
Q ss_pred hhcCCCccHHHHHHHHHHcCCCcccH-------------HHHHHHHHhccCCCCCCCC--CCccchhhHHHHHHHHHHHH
Q 011931 263 DKTGMKGTGKWTVQQAADLSVAAPTI-------------EERVEAAKVFKSGGFGVQS--NQAVDKQKLIDDVRQALYAS 327 (474)
Q Consensus 263 ~~~~~k~tg~~~~~~a~~~gv~~p~~-------------~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~ 327 (474)
|.++|||||+|++++|.++|+|+|++ ++|..+++.++++.+.... ......++|+++||||++|+
T Consensus 79 d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~ 158 (300)
T d1pgja1 79 DRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIA 158 (300)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7788888898866431100 12345678999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChHHHHHHHhhhhhHHHHH
Q 011931 328 KICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVV 407 (474)
Q Consensus 328 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~v 407 (474)
+|++|+|||+||++++++|+|++|+.+|+++||+||||||.||+.+.++|+++|++.+++. .|...+.+....++++|
T Consensus 159 ~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f~~~~~~~~~~~~r~v 236 (300)
T d1pgja1 159 IISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMV 236 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888773 46666667766665555
Q ss_pred -HHHHHcCCChHHHHHHHHHHHhhcCCCch-hHHHHHHhhccCCccceeccCCCcccccccc
Q 011931 408 -CLAINSGISTPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 467 (474)
Q Consensus 408 -~~a~~~gip~p~~~~al~y~~~~~~~~~~-~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 467 (474)
..+++.|+|+|++++||+||++++++++| +|||||||||||+|||+|+|++|.||++|++
T Consensus 237 ~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g~~H~~W~~ 298 (300)
T d1pgja1 237 ALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPE 298 (300)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCCCcCCCCCC
Confidence 56789999999999999999999999999 6999999999999999999999999999976
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=1.4e-31 Score=241.88 Aligned_cols=174 Identities=47% Similarity=0.790 Sum_probs=158.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+.+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.... ....+.+.+++++.+..+|.+++++|+..+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS--SCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc--cccchhhhhhhhhhhcccceEEEecCchHH
Confidence 457999999999999999999999999999999999999987654311 223456777777766679999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
+.++.+++.+.+.+|++|||+||..|.+++++.+.+.++|++|+++|++|++..++.|.++|+||+++++++++++|+.+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~ 159 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCC
Q 011931 167 AAQVPDSGPCVTYVSK 182 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~ 182 (474)
+.++..++||+.|+|+
T Consensus 160 ~~kv~~g~~c~~~~G~ 175 (176)
T d2pgda2 160 AAKVGTGEPCCDWVGD 175 (176)
T ss_dssp SCBCTTSCBSCCCCEE
T ss_pred hcccCCCCcCceeeCC
Confidence 9999889999999986
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=2.5e-31 Score=236.76 Aligned_cols=157 Identities=22% Similarity=0.341 Sum_probs=147.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ...+.+++|++++ +|+||+|||++.++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhh-------hhhcccHHHHHhC---CCeEEEEcCCHHHH
Confidence 7899999999999999999999999999999999999988765 4678899999999 99999999999999
Q ss_pred HHHH---HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHH
Q 011931 88 DETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 88 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (474)
++++ +.+.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..++.|+ ++|+||+++.+++++++|
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il 150 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 150 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9998 568888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccCCCCCCceEEeC
Q 011931 164 LKVAAQVPDSGPCVTYVS 181 (474)
Q Consensus 164 ~~lg~~~~~~~~~~~~~g 181 (474)
+.++.+ ++|+|
T Consensus 151 ~~~~~~-------i~~~G 161 (161)
T d1vpda2 151 KAMAGS-------VVHTG 161 (161)
T ss_dssp HTTEEE-------EEEEE
T ss_pred HHhcCc-------eEECC
Confidence 999987 57875
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=3.3e-30 Score=229.64 Aligned_cols=158 Identities=25% Similarity=0.359 Sum_probs=146.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+||||||+|.||.+||++|+++||+|.+|||++++.+.+.+.+ .....++.|++.. +|+|++|||++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTS---CSEEEECCSCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh-------ccccchhhhhccc---cCeeeecccchhh
Confidence 67899999999999999999999999999999999998887654 4567889999988 9999999999988
Q ss_pred HHHHHH---HHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHH
Q 011931 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (474)
++.++. ++.+.+.+|++|||+||+.|.++.++.+.++++|++|+++||+|++++++.|+ ++|+||+++++++++++
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~i 150 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 150 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHH
Confidence 888874 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeC
Q 011931 163 LLKVAAQVPDSGPCVTYVS 181 (474)
Q Consensus 163 l~~lg~~~~~~~~~~~~~g 181 (474)
|+.++.+ ++|+|
T Consensus 151 l~~~~~~-------v~~~G 162 (162)
T d3cuma2 151 FEAMGRN-------IFHAG 162 (162)
T ss_dssp HHHHEEE-------EEEEE
T ss_pred HHHHcCc-------cEECc
Confidence 9999987 57875
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.95 E-value=4.4e-28 Score=219.11 Aligned_cols=176 Identities=45% Similarity=0.758 Sum_probs=154.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|||||||+|.||.+||++|+++||+|.+|||++++.+++.+.+..... .......+..+++..+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 689999999999999999999999999999999999999887643110 0234456777888777789999999999999
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~l 166 (474)
++.++..+.+.+.++++++|+||..|.+++++.+.+.+++++|+++||+|++.+++.|.++|+||+++.+++++++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhH
Q 011931 167 AAQVPDSGPCVTYVSKGGSG 186 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~~g~g 186 (474)
+.++.++.+ |+|+.|+|
T Consensus 162 ~~~~~~~~~---~~g~~G~G 178 (178)
T d1pgja2 162 AAKADDGRP---CVTMNGSG 178 (178)
T ss_dssp SCBCTTSCB---SCCCCCST
T ss_pred hccccCCCC---ccCCCCCC
Confidence 998644433 56776664
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=8.3e-27 Score=206.12 Aligned_cols=154 Identities=29% Similarity=0.360 Sum_probs=136.7
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
||||||+|.||.+||++|+++|+.| +|||++++..++.+.+. ..... .+.+.+ +|++|+++|++.++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~---~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-------SEAVP-LERVAE---ARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-------CEECC-GGGGGG---CSEEEECCSSHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-------Ccccc-cccccc---eeEEEecccchhhhh
Confidence 7999999999999999999998865 78999888888777553 12333 344455 999999999998888
Q ss_pred HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHHHh
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~lg 167 (474)
.+...+.+.+.++.++||+||..|.+++++.+.++++|++|+|+||+||+.+|.+|+ ++|+||+++.+++++++|+ ++
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TE
T ss_pred hhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hc
Confidence 888999999999999999999999999999999999999999999999999999999 9999999999999999994 88
Q ss_pred ccCCCCCCceEEeCC
Q 011931 168 AQVPDSGPCVTYVSK 182 (474)
Q Consensus 168 ~~~~~~~~~~~~~g~ 182 (474)
.+ ++|+||
T Consensus 149 ~~-------v~~~GP 156 (156)
T d2cvza2 149 KK-------VVHVGP 156 (156)
T ss_dssp EE-------EEEEES
T ss_pred Cc-------CEEeCc
Confidence 76 689986
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.87 E-value=2.7e-23 Score=200.13 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=98.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL-KLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l-~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
|+||||||||||||||+||.++|+|++||.. +++. ++.+|++.|++|.+++||||+++.++++++++....++|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~----~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~ 76 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM----GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEH 76 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHH
Confidence 6899999999999999999999999999853 3222 5777888898777999999999999998765445677787
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRER 434 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~--y~~~~~~~~ 434 (474)
+.+.+-++++| +|++++|+++|+|+|++++|+. ++++++.+|
T Consensus 77 I~d~a~~kGTG--~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R 120 (300)
T d1pgja1 77 VMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER 120 (300)
T ss_dssp BCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHH
T ss_pred hcccccCCchH--HHHHHHHHHcCCCccHHHHHHHHHHHhCChHHH
Confidence 77878788888 9999999999999999999996 455555444
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.87 E-value=2.6e-23 Score=199.53 Aligned_cols=113 Identities=6% Similarity=0.036 Sum_probs=94.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccChH
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 391 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~~ 391 (474)
|+||||||||||||||+||+|+|+|++|+++-... +.++.+|++.|+.| .++||||+++.+++++++...+.++|.+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~--~~~i~~vf~~w~~~-~l~syLleit~~il~~kd~~~~~~ld~I 77 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLG--HKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLLPKI 77 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--HHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSGGGS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHhCC-CccHHHHHHHHHHHhccCCCcCcchhhh
Confidence 68999999999999999999999999999753211 24566666669998 8999999999999986654455677777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHh
Q 011931 392 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDS 429 (474)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~-y~~~ 429 (474)
.+.+-++++| +|+|++|+++|+|+|+|++||. ++.|
T Consensus 78 ~d~a~~kGTG--~Wt~~~Al~lgvp~p~I~~Av~aR~~S 114 (297)
T d2pgda1 78 RDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLS 114 (297)
T ss_dssp CCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hccccCCCch--HHHHHHHHHcCCCchHHHHHHhhHhhc
Confidence 7777788888 9999999999999999999996 4443
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=1.1e-21 Score=172.05 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=120.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|.||++||++|+++||+|++||+++++...+...+ +....+++|+++. +|+||+|||++ +.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diIi~~v~~~-~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-------VGVTETSEEDVYS---CPVVISAVTPG-VA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-------HTCEECCHHHHHT---SSEEEECSCGG-GH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhc-------ccccccHHHHHhh---cCeEEEEecCc-hH
Confidence 7999999999999999999999999999999887777666554 2356788999998 99999999987 55
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKV 166 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~l 166 (474)
.+++..+.+.+ ++++||+||..|..++++++.++. ..|+++|++|++..+..+. .++.|++.+.+++ |+.+
T Consensus 70 ~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~--~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~ 141 (152)
T d1i36a2 70 LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK--GGFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRY 141 (152)
T ss_dssp HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS--SEEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGG
T ss_pred HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc--cCCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHc
Confidence 66666666654 689999999999999988887754 4699999999999888888 4455555554443 6777
Q ss_pred hccCCCCCCceEEeCC
Q 011931 167 AAQVPDSGPCVTYVSK 182 (474)
Q Consensus 167 g~~~~~~~~~~~~~g~ 182 (474)
|.+ +.++|.
T Consensus 142 g~~-------i~~~G~ 150 (152)
T d1i36a2 142 GLN-------IEVRGR 150 (152)
T ss_dssp TCE-------EEECSS
T ss_pred CCe-------eeEcCC
Confidence 765 577775
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.83 E-value=1.5e-20 Score=166.94 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=116.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|.||++||++|.++||+|++|||+++.++++.+.+. +....+..+.++. +|+||+|+|+. .+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~------~~~~~~~~~~~~~---~DiIilavp~~-~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL------VDEAGQDLSLLQT---AKIIFLCTPIQ-LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS------CSEEESCGGGGTT---CSEEEECSCHH-HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc------cceeeeecccccc---cccccccCcHh-hh
Confidence 78999999999999999999999999999999999888776542 2223344455565 99999999985 89
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHH-cCCeEEecCCCCCcccccC----CC-ccc---cCCCHHHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE-LGLLYLGMGVSGGEEGARH----GP-SLM---PGGSFEAYKY 158 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g~~~v~~pvsgg~~~a~~----G~-~i~---~gg~~~~~~~ 158 (474)
+++++++.+.+.++.+|+|+++..........+.... .+.|.+..|..+|+..+.. +. .++ .+++++.++.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~ 150 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHH
Confidence 9999999999999999999999875554444332211 0334445565666655442 33 333 4789999999
Q ss_pred HHHHHHHHhccC
Q 011931 159 IEDILLKVAAQV 170 (474)
Q Consensus 159 v~~ll~~lg~~~ 170 (474)
++++|+.+|.++
T Consensus 151 v~~l~~~lG~~v 162 (165)
T d2f1ka2 151 LRSVLEPLGVKI 162 (165)
T ss_dssp HHHHHGGGTCEE
T ss_pred HHHHHHHhCCEE
Confidence 999999999873
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.75 E-value=2.9e-18 Score=149.82 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=115.7
Q ss_pred CCCcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 4 GKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 4 ~~~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
+..|+||+||| +|.||++||++|.++||+|++|||++... .++.+.. +|++++++|
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~--------------------~~~~~~~---~~~v~~~~~ 62 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV--------------------AESILAN---ADVVIVSVP 62 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG--------------------HHHHHTT---CSEEEECSC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc--------------------cchhhhh---ccccccccc
Confidence 45577999999 99999999999999999999999986532 2233444 899999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCC--ccccCCCHHHHHHH
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP--SLMPGGSFEAYKYI 159 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~--~i~~gg~~~~~~~v 159 (474)
.. ++..++.++.+.++++.+|+|++|+.+...+.+.+. ...+|+. .|++|++.+...|. .++.|++++.++++
T Consensus 63 ~~-~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~---~~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~ 138 (152)
T d2pv7a2 63 IN-LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWL 138 (152)
T ss_dssp GG-GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHH
T ss_pred hh-hheeeeecccccccCCceEEEecccCHHHHHHHHHH---ccCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHH
Confidence 85 788899999999999999999999988776665543 3446775 69999888888887 34568899999999
Q ss_pred HHHHHHHhccC
Q 011931 160 EDILLKVAAQV 170 (474)
Q Consensus 160 ~~ll~~lg~~~ 170 (474)
.++|+.+|+++
T Consensus 139 ~~ll~~~Ga~v 149 (152)
T d2pv7a2 139 LEQIQIWGAKI 149 (152)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHhCCEE
Confidence 99999999873
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=8.3e-20 Score=159.92 Aligned_cols=149 Identities=7% Similarity=-0.020 Sum_probs=111.1
Q ss_pred EEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHH
Q 011931 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDE 89 (474)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~ 89 (474)
|||||+|+||++|+.+|.+.++.+.+|+|++++.+++.+.+. ..+.+++++++. +|+||+|||++ ++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~-------~~~~~~~~~~~~---~DiVil~v~d~-~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYG-------GKAATLEKHPEL---NGVVFVIVPDR-YIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTC-------CCCCSSCCCCC------CEEECSCTT-THHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccc-------ccccchhhhhcc---CcEEEEeccch-hhhH
Confidence 899999999999999997765556799999999999988763 235577787777 99999999986 6777
Q ss_pred HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-ccccCCCHHHHHHHHHHHHHHhc
Q 011931 90 TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAA 168 (474)
Q Consensus 90 vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~lg~ 168 (474)
++.++. .++.+|||+|+..+....+ .....+++++.+++.++...+..+. .++++||+++++.++++|+.+|.
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~ 144 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 144 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCS
T ss_pred HHhhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCC
Confidence 765542 4789999999988755432 2223467788888877776666555 78889999999999999999998
Q ss_pred cCCCCCCceEEeCC
Q 011931 169 QVPDSGPCVTYVSK 182 (474)
Q Consensus 169 ~~~~~~~~~~~~g~ 182 (474)
+ ++++++
T Consensus 145 ~-------~~~i~~ 151 (153)
T d2i76a2 145 K-------YFVIPS 151 (153)
T ss_dssp C-------EEECCG
T ss_pred c-------EEEeCC
Confidence 7 467654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.72 E-value=7.2e-17 Score=143.44 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=115.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|+||+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+.. ....++..+... ..+|+||+|+|..
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----~~~~~~~~~~~~--~~~dlIila~p~~ 73 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVED--FSPDFVMLSSPVR 73 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGG--TCCSEEEECSCHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----hhhhhhhhhhhc--cccccccccCCch
Confidence 4579999999999999999999996 788999999999888776531 123444444332 1289999999974
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCC----ccccc----CCC-cccc---CC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGG----EEGAR----HGP-SLMP---GG 151 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg----~~~a~----~G~-~i~~---gg 151 (474)
.+..+++++.+.+.++++|+|++++.....+.+.+.+.. +|+. .|+.|. +..+. .|. .+++ +.
T Consensus 74 -~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~ 149 (171)
T d2g5ca2 74 -TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 149 (171)
T ss_dssp -HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred -hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCC
Confidence 788999999999999999999999987777666665543 4554 466664 33332 344 3333 34
Q ss_pred CHHHHHHHHHHHHHHhccC
Q 011931 152 SFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~ 170 (474)
+++.++.++++|+.+|+++
T Consensus 150 ~~~~~~~v~~~~~~lG~~v 168 (171)
T d2g5ca2 150 DKKRLKLVKRVWEDVGGVV 168 (171)
T ss_dssp CHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 8899999999999999873
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.65 E-value=5.5e-16 Score=135.16 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=107.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||||||+|+||++|+.+|.++|++|++|+|++++.+++.++. ++..+.+.+++++. +|+||+||++ +.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---~dvIilavkp-~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-QLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-GGH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc------ceeeechhhhhhhc---cceeeeecch-HhH
Confidence 7899999999999999999999999999999999999887654 25677899999998 9999999987 466
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccCC--CHHHHHHHHHHH
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPGG--SFEAYKYIEDIL 163 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~gg--~~~~~~~v~~ll 163 (474)
++++ +.+.++++||+..++.. ...+.+.+. .+..++. +|... .....|.+ +..+. +++..+.++++|
T Consensus 71 ~~vl----~~l~~~~~iis~~agi~--~~~l~~~l~-~~~~ivr~mPN~~--~~v~~g~~~~~~~~~~~~~~~~~v~~l~ 141 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGIS--LQRLATFVG-QDLPLLRIMPNMN--AQILQSSTALTGNALVSQELQARVRDLT 141 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTCC--HHHHHHHHC-TTSCEEEEECCGG--GGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHh----hhcccceeEeccccccc--HHHHHhhhc-ccccchhhccchh--hhcCccceEEEeCCCCCHHHHHHHHHHH
Confidence 6664 45678899999887753 344555543 3345554 45322 12224443 33332 689999999999
Q ss_pred HHHhc
Q 011931 164 LKVAA 168 (474)
Q Consensus 164 ~~lg~ 168 (474)
+.+|.
T Consensus 142 ~~~G~ 146 (152)
T d2ahra2 142 DSFGS 146 (152)
T ss_dssp HTTEE
T ss_pred HhCCC
Confidence 99996
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.58 E-value=1.5e-14 Score=132.02 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=114.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhcC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSIQ 72 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 72 (474)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+... .. .++..+++..++++.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~--~~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT--GRLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT--TCEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcc--cccccCCCHHHHHhh--
Confidence 78999999999999999999999999999999999887653210 10 045677889998888
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHH---hcccCCCEEEecCCCCchhHHHHHHHHHH--------cCCeEEec
Q 011931 73 KPRVIIMLVKAGA---------PVDETIKTLS---AYMEKGDCIIDGGNEWYENTERREKAMAE--------LGLLYLGM 132 (474)
Q Consensus 73 ~~dvIil~vp~~~---------~v~~vl~~l~---~~l~~g~iiId~st~~~~~~~~~~~~l~~--------~g~~~v~~ 132 (474)
+|++++|||++. .+..+++.+. ....++++||..||+.|++++++...+.+ ..+++.-+
T Consensus 77 -~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (202)
T d1mv8a2 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (202)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhh
Confidence 999999999852 3455555444 44568899999999999999987655422 13455666
Q ss_pred CCCCCcccc----cCCCccccCC-CHHHHHHHHHHHHHHhcc
Q 011931 133 GVSGGEEGA----RHGPSLMPGG-SFEAYKYIEDILLKVAAQ 169 (474)
Q Consensus 133 pvsgg~~~a----~~G~~i~~gg-~~~~~~~v~~ll~~lg~~ 169 (474)
|-.-.+-.+ ..-+.+++|+ +++..+.++++|+.+..+
T Consensus 156 PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSC
T ss_pred hhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 633222111 1222456676 788899999999887654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.56 E-value=2.8e-15 Score=130.62 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=103.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|||||||+|+||.+|+.+|.++| ++|.+|||++++.+++.++. ++...++.+++ .. +|+||+||++ ++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------~~~~~~~~~~v-~~---~Div~lavkP-~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPEL-HS---DDVLILAVKP-QD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCC-CT---TSEEEECSCH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------ccccccccccc-cc---cceEEEecCH-HH
Confidence 79999999999999999999887 89999999999999988764 25566666653 44 9999999996 57
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCcccccCCCc-cccCC--CHHHHHHHHHH
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGPS-LMPGG--SFEAYKYIEDI 162 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~-~pvsgg~~~a~~G~~-i~~gg--~~~~~~~v~~l 162 (474)
++++++++. ..+++||+..++.+ ...+.+.+. ...+++. +|.. +.....|.+ +..+. +++..+.++++
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~--~~~l~~~l~-~~~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l 141 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLS--VGTLSRYLG-GTRRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRI 141 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCC--HHHHHHHTT-SCCCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhHHHHh---hcccEEeecccCCC--HHHHHHHhC-cCcceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 787776653 35789999887764 334555443 2233443 3432 233345653 44443 68889999999
Q ss_pred HHHHhc
Q 011931 163 LLKVAA 168 (474)
Q Consensus 163 l~~lg~ 168 (474)
|+.+|.
T Consensus 142 ~~~~G~ 147 (152)
T d1yqga2 142 MKSVGL 147 (152)
T ss_dssp HHTTEE
T ss_pred HHhCCC
Confidence 999995
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.55 E-value=1.4e-15 Score=141.26 Aligned_cols=156 Identities=15% Similarity=0.045 Sum_probs=125.7
Q ss_pred cEEEEcccH--hHHHHHH------HHHHCCCcEEEEeCChHHHHHHHHhhh----------------hcC----------
Q 011931 9 RIGLAGLAV--MGQNLAL------NIAEKGFPISVYNRTTSKVDETVERAK----------------KEG---------- 54 (474)
Q Consensus 9 ~IgiIGlG~--mG~~lA~------~L~~~G~~V~v~dr~~~~~~~l~~~~~----------------~~~---------- 54 (474)
+++++|+|. ||..++. +|++.|+.|++.|.+++++.+....+. ...
T Consensus 42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~ 121 (242)
T d2b0ja2 42 SSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHL 121 (242)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEES
T ss_pred eeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhc
Confidence 477888886 8888877 789999999999999876422211110 000
Q ss_pred ----CCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011931 55 ----DLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (474)
Q Consensus 55 ----~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v 130 (474)
..+++.++|+.|+++. +|+||+|||.+..+.++++++.+.++++.+|+|+||+.+....++.+.+.+++++|+
T Consensus 122 ~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi 198 (242)
T d2b0ja2 122 VHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT 198 (242)
T ss_dssp SCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE
T ss_pred CCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEE
Confidence 0035677899999998 999999999988899999999999999999999999999999999999988899999
Q ss_pred ecCCCCCcccccCCC--ccccCCCHHHHHHHHHHHHHHhcc
Q 011931 131 GMGVSGGEEGARHGP--SLMPGGSFEAYKYIEDILLKVAAQ 169 (474)
Q Consensus 131 ~~pvsgg~~~a~~G~--~i~~gg~~~~~~~v~~ll~~lg~~ 169 (474)
+++..++++ ..|. .++.+++++.++++.++|+.+|.+
T Consensus 199 ~~hp~a~pe--~~g~~li~~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 199 SYHPGCVPE--MKGQVYIAEGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ECBCSSCTT--TCCCEEEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCccCcCc--cccceEEecCCCCHHHHHHHHHHHHHHCCC
Confidence 886666554 2333 556678999999999999999976
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.5e-13 Score=123.98 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=107.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC---------------CCccccCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD---------------LPLFGFRD 63 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~~~---------------~~~~~~~s 63 (474)
+..||+|||+|.||..+|..++.+||+|++||++++.+++..+... ..+. .++..+++
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 3468999999999999999999999999999999987664433211 0000 03445667
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHH-HHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCC-CCC
Q 011931 64 PESFVNSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGV-SGG 137 (474)
Q Consensus 64 ~~e~~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pv-sgg 137 (474)
..+++.. +|+|+.|+|....++ +++.++.+..+++.++...|++.+.+ +++..+... |.||+..|- ..-
T Consensus 83 ~~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~HffnP~~~~~l 157 (192)
T d1f0ya2 83 AASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFNPVPVMKL 157 (192)
T ss_dssp HHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECSSTTTCCE
T ss_pred hHhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccc--hhhhhccCHhHEEeeccccccCcccE
Confidence 7777766 999999999987766 55588888888888887777766433 344333211 556664431 111
Q ss_pred cccccCCCccccC--CCHHHHHHHHHHHHHHhccC
Q 011931 138 EEGARHGPSLMPG--GSFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 138 ~~~a~~G~~i~~g--g~~~~~~~v~~ll~~lg~~~ 170 (474)
. -++.| .+++.++.+..+++.+|..+
T Consensus 158 V-------EIv~g~~T~~~~i~~~~~~~~~lgk~p 185 (192)
T d1f0ya2 158 V-------EVIKTPMTSQKTFESLVDFSKALGKHP 185 (192)
T ss_dssp E-------EEECCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred E-------EEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1 14444 37999999999999999763
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.45 E-value=4.2e-14 Score=127.39 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=109.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-------CCCccccCCHHHHHhhcCCCcEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-------DLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~-------~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
.|.||+|||+|.||+++|..|+++||+|++|+|+++.++.+.+.+.+.. ..++..+++++++++. +|+||
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~ii 82 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIIL 82 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCEE
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEEE
Confidence 3567999999999999999999999999999999999998887653210 0146778889999888 99999
Q ss_pred EecCCChhHHHHHHHHHhc-----ccCCCEEEecCCCCchhHH-HHHHHHHH----cCCeEEecCCCCCcccccCCC-cc
Q 011931 79 MLVKAGAPVDETIKTLSAY-----MEKGDCIIDGGNEWYENTE-RREKAMAE----LGLLYLGMGVSGGEEGARHGP-SL 147 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~-----l~~g~iiId~st~~~~~~~-~~~~~l~~----~g~~~v~~pvsgg~~~a~~G~-~i 147 (474)
++||.. .++.+++++.+. +.++..|+.++.+....+. .+.+.+.+ ..+.++..|-.. .+-++.-| .+
T Consensus 83 iavPs~-~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A-~Ev~~~~pt~~ 160 (189)
T d1n1ea2 83 FVIPTQ-FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFA-IEVATGVFTCV 160 (189)
T ss_dssp ECSCHH-HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCH-HHHHTTCCEEE
T ss_pred EcCcHH-HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcH-HHHHcCCCcEE
Confidence 999984 888888877653 4567788888877643332 22233322 223445444322 23344444 44
Q ss_pred c-cCCCHHHHHHHHHHHHH
Q 011931 148 M-PGGSFEAYKYIEDILLK 165 (474)
Q Consensus 148 ~-~gg~~~~~~~v~~ll~~ 165 (474)
. .+-+.+..+.++++|..
T Consensus 161 viAs~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 161 SIASADINVARRLQRIMST 179 (189)
T ss_dssp EEECSSHHHHHHHHHHHSC
T ss_pred EEEeCCHHHHHHHHHHhCC
Confidence 4 45588888889988864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.43 E-value=5.9e-13 Score=118.63 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=90.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C-----CCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D-----LPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~-----~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+||+|||+|.||..+|..|+++||+|.+|||++++.+.+.+.+.... . .....++++.|+++. +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 58999999999999999999999999999999999998876542100 0 012345678888887 999999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g 126 (474)
++|+. .++.+++++.+++.++++|+..++... ......+.+...+
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~~-~~~~~~~~~~~~~ 123 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENG 123 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCCc-cHHHHHHHHHHhc
Confidence 99986 789999999999999999887666543 4445555555543
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.38 E-value=6e-13 Score=112.81 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=88.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHh
Q 011931 183 GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVL 262 (474)
Q Consensus 183 ~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~ 262 (474)
.|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+.+.|+.++.+.+.+..+ +|.|+|.++.+.
T Consensus 2 vG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-id~~~~~~~l---~~~~~~S~~~~~~~~~~~~~-~~~~~f~~~l~~ 76 (133)
T d1vpda1 2 IGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKAPMVMDR-NFKPGFRIDLHI 76 (133)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHHHHHHTT-CCCCSSBHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhccccchhhhhccchhhhc-cCCCCchHHHHH
Confidence 599999999999999999999999999999999 9999999998 78888999999988877664 488999999999
Q ss_pred hhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 263 DKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 263 ~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
||++ ++.+.|++.|+|+|+.
T Consensus 77 KDl~------l~~~~a~~~~~~~p~~ 96 (133)
T d1vpda1 77 KDLA------NALDTSHGVGAQLPLT 96 (133)
T ss_dssp HHHH------HHHHHHHHHTCCCHHH
T ss_pred HHHH------HHHHHHHHcCCCChHH
Confidence 9998 9999999999999998
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=4.5e-13 Score=119.69 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=98.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC--hHHHHHHHHhhhhcCCC-------CccccCCHHHHHhhcCCCcEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT--TSKVDETVERAKKEGDL-------PLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~--~~~~~~l~~~~~~~~~~-------~~~~~~s~~e~~~~l~~~dvIi 78 (474)
|||+|||+|.||.++|..|+++|++|.+|.|+ ++.++.+.+..... .+ ++..+++++++++. +|+||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii 76 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHP-RLGVKLNGVEIFWPEQLEKCLEN---AEVVL 76 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBT-TTTBCCCSEEEECGGGHHHHHTT---CSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhh-hhcchhccccccccccHHHHHhc---cchhh
Confidence 79999999999999999999999999999884 44566655432111 00 23456677888887 99999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCC-chhH--HHHHHHHHHc------CCeEEecCCCCCcccccCCC--cc
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENT--ERREKAMAEL------GLLYLGMGVSGGEEGARHGP--SL 147 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~--~~~~~~l~~~------g~~~v~~pvsgg~~~a~~G~--~i 147 (474)
++||.. .++++++++.+.+++..+| .++.+. +.+. ....+.+.+. .+.++..|-.. .+-++.-+ .+
T Consensus 77 ~avps~-~~~~~~~~l~~~l~~~~ii-~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A-~Ei~~~~pt~~v 153 (180)
T d1txga2 77 LGVSTD-GVLPVMSRILPYLKDQYIV-LISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIA-REVAKRMPTTVV 153 (180)
T ss_dssp ECSCGG-GHHHHHHHHTTTCCSCEEE-ECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCH-HHHHTTCCEEEE
T ss_pred cccchh-hhHHHHHhhccccccceec-ccccCccccccccccchHHHHhhhcccccceeEEcCCccH-HHHHcCCCcEEE
Confidence 999985 8999999999998765444 444443 1111 1122222221 12334444322 23333334 34
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 011931 148 MPGGSFEAYKYIEDILLK 165 (474)
Q Consensus 148 ~~gg~~~~~~~v~~ll~~ 165 (474)
+.+.+.+..+.++++|+.
T Consensus 154 ias~~~~~a~~i~~~f~~ 171 (180)
T d1txga2 154 FSSPSESSANKMKEIFET 171 (180)
T ss_dssp EECSCHHHHHHHHHHHCB
T ss_pred EEcCCHHHHHHHHHHHCC
Confidence 556688888888888853
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.35 E-value=1.1e-12 Score=117.68 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=103.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cCCC----------CccccCCHHHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGDL----------PLFGFRDPESFV 68 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~~~~----------~~~~~~s~~e~~ 68 (474)
+..||+|||+|.||+++|..++.+|++|++||++++.+++..+.... .+.. ++..+.+.++ +
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 81 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-F 81 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-G
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-c
Confidence 45689999999999999999999999999999999877655432110 0000 2333444443 3
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCC-CCCccccc
Q 011931 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGV-SGGEEGAR 142 (474)
Q Consensus 69 ~~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~v~~pv-sgg~~~a~ 142 (474)
.+ +|+||.++|....++. ++.++.+..+++.||...|++.+.+ ++++.+... |.||...|- ....
T Consensus 82 ~~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~--~la~~~~~p~r~~g~Hf~nP~~~~~lV---- 152 (186)
T d1wdka3 82 GN---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFNPVHMMPLV---- 152 (186)
T ss_dssp GG---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCSSTTTCCEE----
T ss_pred cc---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH--HHHHhccCchheEeeccccCcccCCeE----
Confidence 44 9999999999877774 5588888888899888877776543 344433221 344443321 1111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccC
Q 011931 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQV 170 (474)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~lg~~~ 170 (474)
-++.| .+++.++.+..+++.+|..+
T Consensus 153 ---Eiv~~~~T~~~~~~~~~~~~~~lgk~p 179 (186)
T d1wdka3 153 ---EVIRGEKSSDLAVATTVAYAKKMGKNP 179 (186)
T ss_dssp ---EEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred ---EECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 14444 47899999999999999763
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.35 E-value=1.4e-12 Score=110.69 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=85.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc-------ccccccCCC
Q 011931 182 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-------FGIKDDKGD 254 (474)
Q Consensus 182 ~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------l~~~~~~~~ 254 (474)
|.|+|+.+|+++|.+.+..+++++|++.++++.| ++++.+.+++ +.+.+.|+.++...+. +.. ++|.+
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G-ld~~~~~eil---~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYNPWPGVMENAPAS-RDYSG 75 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCCCSTTSSTTSGGG-GTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---Hhcccchhhhhhhhhhhhccchhhhc-CCCCC
Confidence 5699999999999999999999999999999999 9999999998 6788899999875432 222 34788
Q ss_pred cchHHHHhhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 255 GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 255 ~~~~~~i~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+|.++.+.||++ ++.+.|++.|+|+|++
T Consensus 76 ~f~~~l~~KDl~------l~~~~a~~~g~~~p~~ 103 (134)
T d3cuma1 76 GFMAQLMAKDLG------LAQEAAQASASSTPMG 103 (134)
T ss_dssp SSBHHHHHHHHH------HHHHHHHHHTCCCHHH
T ss_pred CcchHHHHHHHH------HHHHHHHHcCCCChHH
Confidence 999999999998 9999999999999998
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=1.8e-12 Score=109.64 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc-cccccccCCCcchHHHH
Q 011931 183 GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD-IFGIKDDKGDGYLVDKV 261 (474)
Q Consensus 183 ~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~~~~~~~-~l~~~~~~~~~~~~~~i 261 (474)
+|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+ .+.. ++|+++|.++.+
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-ld~~~~~~vl---~~s~~~s~~~~~~~p~~~~~-~~~~~~f~~~~~ 75 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRVLT-RAFPKTFALGLL 75 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHTTT-SCCCCSSBHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhhhhhhhhhhhhhHHHHH-HhhhhhhHHHHH
Confidence 489999999999999999999999999999999 9999999998 678888999887765 3443 568999999999
Q ss_pred hhhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 262 LDKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 262 ~~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
.||++ ++.+.|++.|+|+|+.
T Consensus 76 ~KDl~------l~~~~a~~~g~~~pl~ 96 (132)
T d2cvza1 76 VKDLG------IAMGVLDGEKAPSPLL 96 (132)
T ss_dssp HHHHH------HHHHHHTTTCCCCHHH
T ss_pred hhHHH------HHHHHHHHcCCCChHH
Confidence 99998 9999999999999987
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.26 E-value=2.4e-11 Score=109.65 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=96.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----------cCCCCccccCCHHHHHhhcCCCcE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----------EGDLPLFGFRDPESFVNSIQKPRV 76 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~~~~~~~~~~s~~e~~~~l~~~dv 76 (474)
|||+|||+|.+|.++|..|+ .||+|++||.++++++.+.+.... ....++....+....... +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 79999999999999998775 699999999999998877632100 000123444556666666 999
Q ss_pred EEEecCCChh----------HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCC-
Q 011931 77 IIMLVKAGAP----------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP- 145 (474)
Q Consensus 77 Iil~vp~~~~----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~- 145 (474)
|++|||++.. ++.+...+.. ..++.+|+..||..|.+++++.+.+... +++-+| +....|.
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~P-----E~i~~G~a 148 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSP-----EFLRESKA 148 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECC-----CCCCTTST
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchh--hhccch-----hhcchhhh
Confidence 9999998732 3333344443 4578899999999999998887765443 344444 3333332
Q ss_pred --------ccccCCCHHHHHHHHHHH
Q 011931 146 --------SLMPGGSFEAYKYIEDIL 163 (474)
Q Consensus 146 --------~i~~gg~~~~~~~v~~ll 163 (474)
.++.|++.+...++..++
T Consensus 149 i~d~~~p~riv~G~~~~~~~~~~~~~ 174 (196)
T d1dlja2 149 LYDNLYPSRIIVSCEENDSPKVKADA 174 (196)
T ss_dssp THHHHSCSCEEEECCTTSCHHHHHHH
T ss_pred HhhccCCCEEEEeCCHhhHHHHHHHH
Confidence 467777655434443333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.4e-12 Score=110.98 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=75.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
|||+|||+|.||+.+|..|+++||+|++++|++++.+..................+..+.... +|+||++||.. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 799999999999999999999999999999998754432211110000011222334455555 99999999986 89
Q ss_pred HHHHHHHHhcccCCCEEEecCCCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+++++.+.+.+.++++|+.+.|+.
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHhhccccCcccEEeeccCcc
Confidence 999999999999999999998875
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.97 E-value=9.1e-10 Score=98.65 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=94.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+....-.. ... ++....+++++++. +|+|++++|.....
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~-------~~~~~~~l~~ll~~---sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhh-------ccccccchhhcccc---CCEEEEeecccccc
Confidence 57999999999999999999999999999987543221 111 24567799999998 99999999987777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+.++ .+.+..++++.++|++|.+..-+...+.+.+++..+.....-|.-
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~ 168 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHE 168 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcCC
Confidence 7666 567788999999999999998899999998887655443333433
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.95 E-value=8.1e-10 Score=97.97 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=89.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+|||++.. . ......++++++.. ||+|++++|..+..
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~------~~~~~~~l~ell~~---sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G------PWRFTNSLEEALRE---ARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S------SSCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c------ceeeeechhhhhhc---cchhhccccccccc
Confidence 57999999999999999999999999999998642 1 12345788999888 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+.++ .+.+..++++.++|++|.+..-+...+.+.+++..+.
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 7777 6778889999999999999888888888888876554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.92 E-value=1.7e-09 Score=96.63 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=97.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|||||+|.+|+.+|+.+...|.+|.+||+............ .....+++++++. +|+|++++|-....
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~-------~~~~~~l~~ll~~---sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhccc-------ccccCCHHHHHhh---CCeEEecCCCCchH
Confidence 5799999999999999999999999999998755433322221 3456789999998 99999999998777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.+..+++|.++|++|-+..-+...+.+.+++..+.....-|.-.+
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~E 169 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 169 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCC
Confidence 7777 56788899999999999999889999999998776654444454443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.89 E-value=2.7e-09 Score=95.81 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=93.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.|...|.+|.+||+....... .. .....+++++.+. +|+|++++|.....
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~--------~~~~~~l~~~l~~---sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KK--------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HT--------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cc--------eeeeccccccccc---cccccccCCccccc
Confidence 57999999999999999999999999999987653221 11 1235689999998 99999999988777
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCc
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~ 138 (474)
+.++ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|.-.+
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~E 162 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccC
Confidence 7666 56677899999999999998888888888888765544444455444
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=5.3e-09 Score=92.91 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=94.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.+...|.+|.+||+.......... + + ...+++|+++. ||+|++++|..+..
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~-~-------~-~~~~l~ell~~---sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL-G-------I-ELLSLDDLLAR---ADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH-T-------C-EECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhc-C-------c-eeccHHHHHhh---CCEEEEcCCCCchh
Confidence 57999999999999999999999999999998655433221 1 2 24589999998 99999999988888
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+.++ .+.+..++++.++|++|-+..-+...+.+.+++..+.....-|.-
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~ 162 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFA 162 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCS
T ss_pred hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCC
Confidence 7777 577888999999999999998899999998887655444334443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.84 E-value=3.6e-09 Score=94.44 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=92.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
..+|||||+|.+|+.+|+.|...|.+|.+||+........... ++....+++++.+. +|+|++++|....
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~~l~~---sD~v~~~~plt~~ 113 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-------NLTWHATREDMYPV---CDVVTLNCPLHPE 113 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHGGG---CSEEEECSCCCTT
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeeccccccccccc-------cccccCCHHHHHHh---ccchhhccccccc
Confidence 3589999999999999999999999999999875433332222 24567789999988 9999999998887
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
.+.++ .+.+..+++|.++|++|.+..-+...+.+.+++..+.
T Consensus 114 T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 114 TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred chhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 77777 6778889999999999999888888998888765444
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.78 E-value=4.5e-09 Score=94.57 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=92.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|||||+|.+|+.+|+.|...|.+|.+||+.+..... ......+++++.+. ||+|++++|.....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~~l~~~---~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDFDYVSLEDLFKQ---SDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTCEECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh-----------cchhHHHHHHHHHh---cccceeeecccccc
Confidence 57999999999999999999999999999987543110 11234589999998 99999999998877
Q ss_pred HHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
+.++ .+.+..++++.++|+++.+..-+...+.+.+++..+.....-|.-
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~ 161 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE 161 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence 7777 567788999999999999998888899888876655444444443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=6.8e-09 Score=92.57 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=90.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|||||+|.+|..+|+.+...|.+|.+||+...... . ......+++++.+. +|+|++++|-...
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-----~------~~~~~~~l~ell~~---sDii~i~~plt~~ 109 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-----G------NATQVQHLSDLLNM---SDVVSLHVPENPS 109 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-----T------TCEECSCHHHHHHH---CSEEEECCCSSTT
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccchh-----h------hhhhhhhHHHHHhh---ccceeecccCCcc
Confidence 35899999999999999999999999999998753211 0 13455689999998 9999999998877
Q ss_pred HHHHH-HHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011931 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (474)
.+.++ .+.+..++++.++|+++.+..-+...+.+.+++..+..
T Consensus 110 T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~ 153 (188)
T d1sc6a1 110 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAG 153 (188)
T ss_dssp TTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEE
T ss_pred hhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceE
Confidence 77777 67788899999999999999889999999887754443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.70 E-value=3e-08 Score=87.54 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred CcEEEE-cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLA-GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
|||+|| |+|.||++||+.|+++||+|.+|+|++++++++.++....+........+....... .+.....++..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 75 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEA---CDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHH---CSEEEECSCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccch---hhhhhhheeee
Confidence 789999 899999999999999999999999999999888776542210011122234444443 56666666543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.68 E-value=5.5e-08 Score=84.03 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=69.8
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+..+|.|||+|.||..++.+|...|. +|++++|+.++.+++.+.... ......+..+.+.+ +|+||.|++.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~----~~~~~~~~~~~l~~---~Divi~atss 94 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAA 94 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc----ccccchhHHHHhcc---CCEEEEecCC
Confidence 345689999999999999999999998 699999999999988876421 13334455555555 9999999987
Q ss_pred ChhH--HHHHHHHHhcc--cCCCEEEecC
Q 011931 84 GAPV--DETIKTLSAYM--EKGDCIIDGG 108 (474)
Q Consensus 84 ~~~v--~~vl~~l~~~l--~~g~iiId~s 108 (474)
+..+ .+.++.....- .+..+|||.+
T Consensus 95 ~~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 95 PHPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp SSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred CCccccHhhhHHHHHhcccCCCeEEEeec
Confidence 6432 33343333222 2334899986
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.66 E-value=7.4e-08 Score=84.01 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=78.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.++|.|||+|.||..+|.+|+++||+|+++||+.++++++.+...... ..........+....+...|+++.++|...
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~- 79 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-PISLDVNDDAALDAEVAKHDLVISLIPYTF- 79 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEE-EEECCTTCHHHHHHHHTTSSEEEECSCGGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccc-cccccccchhhhHhhhhccceeEeeccchh-
Confidence 357999999999999999999999999999999999999876542110 000111222232233334899999998753
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
...+... ....+..++|.+... .....+.+.....+..++.
T Consensus 80 ~~~~~~~---~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 120 (182)
T d1e5qa1 80 HATVIKS---AIRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMN 120 (182)
T ss_dssp HHHHHHH---HHHHTCEEECSSCCC-HHHHHTHHHHHHTTCEEEC
T ss_pred hhHHHHH---HHhhccceeecccCc-HHHHHHHHHhccccceeeh
Confidence 3333332 234567888887665 4455666666666665554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.64 E-value=1.9e-07 Score=77.83 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=77.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~~ 85 (474)
|+|-|+|+|.+|+.+++.|.+.|++|++.|.++++++++.+..... -+....+..++... ++.+|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d- 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCcH-
Confidence 7899999999999999999999999999999999999887653110 01222233334333 45699999988875
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
...-.+..+...+.+..+|+-..+.. ..+.+.+.|+.++=
T Consensus 77 ~~N~~~~~~~k~~~~~~iI~~~~~~~------~~~~l~~~G~d~vi 116 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGINKTIARISEIE------YKDVFERLGVDVVV 116 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTT------HHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCceEEEEecCHH------HHHHHHHCCCCEEE
Confidence 44444444555667777776655432 23345566775443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=5.2e-08 Score=81.44 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=74.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~~ 85 (474)
+++.|+|+|.+|+.+|..|.+.|++|+++|.++++++++.+.+... +....+..++... ++++|.+|++++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~----~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA----VIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEE----EECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcc----eeeecccchhhhccCCccccEEEEEcCchH
Confidence 3689999999999999999999999999999999999887654311 1111111122211 345999999999875
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
....++..+........+++-..+. ...+.+...|+.++=.|
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~vi~p 118 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRIIHP 118 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEEECH
T ss_pred HhHHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEEECh
Confidence 4444444444545445555444332 23444555677655433
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=7e-07 Score=77.14 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=76.3
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++||||||+|.||.. ....+... ++++. ++|+++++.+.+.+.. ++..+++.+++.++ +|+|++++|+
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~l~~~---~D~V~I~tp~ 71 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAAS---CDAVFVHSST 71 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHTT---CSEEEECSCT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc------cccccccchhhhhh---cccccccccc
Confidence 368999999999986 45556544 56665 8899999988887754 25567888998877 9999999999
Q ss_pred ChhHHHHHHHHHhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 84 GAPVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
....+-+.. + ++.| .++++- -+..+.+..++.+..++.|..+
T Consensus 72 ~~h~~~~~~-a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 72 ASHFDVVST-L---LNAGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp THHHHHHHH-H---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred hhccccccc-c---ccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 855443333 2 3344 455553 2233466777777777666543
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.40 E-value=5.7e-07 Score=77.16 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=71.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.++|+|||.|.-|.+-|+||.+.|.+|++--|...+. +...+.+ +. ..+.+|+++. +|+|++.+|+.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-------f~-v~~~~eA~~~---aDiim~L~PD~- 83 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LK-VADVKTAVAA---ADVVMILTPDE- 83 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CE-EECHHHHHHT---CSEEEECSCHH-
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-------cc-cccHHHHhhh---cCeeeeecchH-
Confidence 3579999999999999999999999999988875543 3333322 33 4589999998 99999999975
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCC
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st 109 (474)
.-.++. +++.|+|++|+.+.-...
T Consensus 84 ~q~~vy~~~I~p~lk~g~~L~FaHG 108 (182)
T d1np3a2 84 FQGRLYKEEIEPNLKKGATLAFAHG 108 (182)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEecc
Confidence 455666 579999999998875443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.35 E-value=2.3e-06 Score=72.39 Aligned_cols=99 Identities=9% Similarity=0.121 Sum_probs=65.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---CCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---GDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+.......+. .........+++++ +. ||+|+++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-~~---adivvita 80 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-KD---ADLVVITA 80 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-TT---CSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh-cc---ccEEEEec
Confidence 469999999999999999999988 48999999998765443221110 01122334456554 33 99999987
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+. .++++...+.+. .+..+++..||-
T Consensus 81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCc
Confidence 5432 123344455543 467788888873
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.34 E-value=2.2e-06 Score=75.37 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=79.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||...+..|... +++|+ ++|+++++.+.+.+..... .....+++++++++. .+.|+|++++|+.
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~-~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTS 77 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGG
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc--cceeecCcHHHhhhc-cccceeeecccch
Confidence 35899999999999999988776 56776 7899999988877653211 023467899999875 4589999999997
Q ss_pred hhHHHHHHHHHhcccCCCEE-Eec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAYMEKGDCI-IDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~ii-Id~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+-+. ..++.|.-| ++- -.....+..++.+..++.+..+
T Consensus 78 ~h~~~~~----~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 78 LHVEWAI----KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp GHHHHHH----HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hhcchhh----hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 6554332 234455544 442 1223456666666666666544
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.26 E-value=4.1e-06 Score=70.99 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=65.4
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccc-cCCHHHHHhhcCCCcEEEE
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFG-FRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~~~~~-~~s~~e~~~~l~~~dvIil 79 (474)
...||+|||+|.+|..+|..|+..|. ++.++|+++++++.......+.. ...... ..+.++ .+. ||+|++
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l~d---aDvvvi 80 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CRD---ADLVVI 80 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TTT---CSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-hcc---ceeEEE
Confidence 34589999999999999999998886 79999999987654433221100 001222 234433 333 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+...+. .++++.+.+..+- |..+++..||-.
T Consensus 81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPv 126 (148)
T d1ldna1 81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV 126 (148)
T ss_dssp CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred ecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCcc
Confidence 875432 2344445666554 667888887754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.25 E-value=1.6e-06 Score=74.45 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=74.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~- 85 (474)
-.||.|||.|..|..-++.....|-+|+++|+++++.+++....... -.....+.+.+.+.++++|+||.++--+-
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 45899999999999999999999999999999999999887765431 11223344444444455999999884321
Q ss_pred hHHHHH-HHHHhcccCCCEEEecCCCC
Q 011931 86 PVDETI-KTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st~~ 111 (474)
....++ ++....+++|.+|||.+...
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq 135 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAVDQ 135 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence 111222 66778899999999988643
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=7.9e-06 Score=71.49 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=75.5
Q ss_pred cCcEEEEcccHhHHH-HHHHHHHCC--CcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQN-LALNIAEKG--FPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~-lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++||||||+|.+|.. .+..+.+.+ ++|. ++|+++++.+.+.+.... ...+++.+|+++. +..|+|++|+|
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~I~tp 76 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLTLP 76 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEECCC
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-----cceeeeeeccccc-cccceeecccc
Confidence 358999999999987 466676543 4555 889999999888776531 3467899999875 44799999999
Q ss_pred CChhHHHHHHHHHhcccCCC-EEEecC-CCCchhHHHHHHHHHHcCCe
Q 011931 83 AGAPVDETIKTLSAYMEKGD-CIIDGG-NEWYENTERREKAMAELGLL 128 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~ 128 (474)
+....+ ++..++ +.|. ++++-- +....+..++.+..++.+..
T Consensus 77 ~~~h~~-~~~~al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 77 VELNLP-FIEKAL---RKGVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp GGGHHH-HHHHHH---HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred cccccc-cccccc---ccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 875443 433333 3444 555531 22345666677766666653
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.23 E-value=5.1e-06 Score=71.71 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=75.6
Q ss_pred CcEEEEcccHhHHH-HHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQN-LALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~-lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+||||||+|.||.. ....|.+. +.++.++|+++++.+.+.+.... ...+++.+++++. +.|+|++|+|+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~--~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-----SATCTDYRDVLQY--GVDAVMIHAATDV 74 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-----CCCCSSTTGGGGG--CCSEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-----ccccccHHHhccc--ccceecccccccc
Confidence 68999999999976 45566555 45888999999999988875431 2356778887753 4899999999975
Q ss_pred hHHHHHHHHHhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 86 PVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
..+-+.. ++. .| .++++- -.....+.+++.+..++++..+
T Consensus 75 H~~~~~~-al~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 75 HSTLAAF-FLH---LGIPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHHHH-HHH---TTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ccccccc-ccc---cccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 5544433 332 33 366653 1223356677777777776643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.8e-06 Score=72.65 Aligned_cols=89 Identities=8% Similarity=-0.001 Sum_probs=69.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
+++|+|.|.+|+.+|+.+...|.+|++||++|-+.-+..-.+ + ...+.++++.. +|+|++++.....+.
T Consensus 26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG-------~-~v~~~~~a~~~---adivvtaTGn~~vI~ 94 (163)
T d1li4a1 26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG-------Y-EVTTMDEACQE---GNIFVTTTGCIDIIL 94 (163)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCHHHHTTT---CSEEEECSSCSCSBC
T ss_pred EEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc-------e-Eeeehhhhhhh---ccEEEecCCCccchh
Confidence 699999999999999999999999999999996644433322 2 34578888887 999999987643211
Q ss_pred HHHHHHHhcccCCCEEEecCCCC
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+-.+.+++|.++.+.+...
T Consensus 95 ---~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 95 ---GRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp ---HHHHTTCCTTEEEEECSSST
T ss_pred ---HHHHHhccCCeEEEEecccc
Confidence 44567799999999987654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.15 E-value=9.9e-06 Score=69.03 Aligned_cols=101 Identities=11% Similarity=0.141 Sum_probs=67.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
++||+|||+|.+|..+|..|+..++ ++.++|+++++++.......+ .+ ......+.+.++..+. +|+|+++
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiVvit 83 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 83 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeEEEe
Confidence 4689999999999999999888886 899999998776544332111 00 0023344566676676 9999998
Q ss_pred cCCCh--------------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA--------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. .++++.+.+.+. .+..+|+..||-.
T Consensus 84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPv 133 (154)
T d1pzga1 84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPL 133 (154)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcH
Confidence 74211 133344445443 4678888888753
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.14 E-value=8.3e-06 Score=68.51 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=63.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----C-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----G-DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----~-~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+|.+|.++|..|+..|. ++.++|+++++.+......... . ..++..+.+.++ .+. +|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~-~~d---advvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH-hcC---CeEEEEE
Confidence 699999999999999999999884 8999999987755433221100 0 002333444444 344 9999999
Q ss_pred cCCC----h-----------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAG----A-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.-.+ . .++++.+.+.++ .|+.+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNP 120 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNP 120 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSS
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCC
Confidence 6321 1 123344455554 377888888874
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.12 E-value=4.1e-06 Score=74.26 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=68.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC------CcEEEEeCCh-HHHHHHHHhhhhcCCCCcc--ccCCHHHHHhhcCCCcEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG------FPISVYNRTT-SKVDETVERAKKEGDLPLF--GFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G------~~V~v~dr~~-~~~~~l~~~~~~~~~~~~~--~~~s~~e~~~~l~~~dvI 77 (474)
+++|+|||.|.-|.+-|+||.+.| ..|.+-=|.. ...+...+.+- ... ...+.+|+++. +|+|
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf-----~v~~~~v~~v~EAv~~---ADiV 115 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGF-----SEENGTLGDMWETISG---SDLV 115 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTC-----CGGGTCEEEHHHHHHT---CSEE
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCC-----ccCCCcccCHHHHHhh---CCEE
Confidence 357999999999999999999955 5577664443 23333443331 111 13478899988 9999
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+|+. .-.++.+++.|+|++|+++.-.-.
T Consensus 116 miLlPDe-~Q~~vy~~I~p~Lk~G~~L~FaHG 146 (226)
T d1qmga2 116 LLLISDS-AQADNYEKVFSHMKPNSILGLSHG 146 (226)
T ss_dssp EECSCHH-HHHHHHHHHHHHSCTTCEEEESSS
T ss_pred EEecchH-HHHHHHHHHHHhcCCCceeeecch
Confidence 9999985 556677899999999998876443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.11 E-value=9.9e-06 Score=68.01 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=63.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
|||+|||+|.+|.++|..|+.+|. ++.++|+++++++.......+ .. ..++....+.+++ +. +|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~-~~---adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-KG---SEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGG-TT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHh-cc---ccEEEEe
Confidence 799999999999999999998875 799999999876543211110 00 0023444555543 33 9999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...+. .++++.+.+.+. .+..+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCC
Confidence 75321 122233344443 467899999883
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=9.8e-06 Score=67.91 Aligned_cols=100 Identities=16% Similarity=0.230 Sum_probs=62.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC--CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG--DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~--~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
|||+|||+|.+|.++|..|+.++. ++.++|+++++++.......... ..+....++..+..+. +|+|+++...
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~---adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKG---SDVVIVAAGV 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTT---CSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcC---CCEEEEeccc
Confidence 799999999999999999988875 89999999887664433211100 0011222222333344 9999999743
Q ss_pred C----hh-----------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 G----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+ .. ++++.+.+.+. .|+.+++..||-.
T Consensus 78 ~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPv 119 (140)
T d1a5za1 78 PQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPV 119 (140)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred ccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcH
Confidence 2 11 22333444443 4678888888743
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.01 E-value=1.6e-05 Score=66.78 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=64.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc----C-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE----G-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~----~-~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+.......+. . ..++..+.+.+++.. +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998876 8999999987755433221100 0 012444566666543 99999998
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+. .++++...+.++ .|..+++..||-
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNP 120 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNP 120 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSS
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCc
Confidence 5432 123333455543 457777777763
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.01 E-value=3e-05 Score=65.05 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=63.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhh----cCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKK----EGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.||+|||+|.+|.++|..|+.+|. ++.++|+++++++.......+ .+...+....+.++ .+. +|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~d---aDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CRD---ADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hhC---CcEEEEec
Confidence 489999999999999999999886 899999999876543221111 00012333445544 343 99999987
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-.+. .++++..++.+. .+..+++..||-.
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPv 121 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 121 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCch
Confidence 4431 122333445444 4677888888743
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.00 E-value=1.1e-05 Score=72.92 Aligned_cols=116 Identities=9% Similarity=0.126 Sum_probs=76.1
Q ss_pred CcEEEEcccHhHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
-||||||+|.||.. +...+... +++|. ++|+++++.+.+.+..... ...+..++|.+++++. ++.|+|++++|+.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~ell~~-~~iD~V~I~tp~~ 111 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPNS 111 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhhhccc-ccceeeeeccchh
Confidence 47999999999975 55555544 56766 8899999999887764210 0013346788998864 4589999999997
Q ss_pred hhHHHHHHHHHhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011931 85 APVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (474)
...+-++..+ +.|. ++++- -+..+.+..++.+..++.++.+
T Consensus 112 ~H~~~~~~al----~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 112 LHAEFAIRAF----KAGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp GHHHHHHHHH----HTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHhh----hcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 6555444333 3444 45552 1234456667777666666544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.98 E-value=2.2e-06 Score=74.45 Aligned_cols=86 Identities=15% Similarity=0.363 Sum_probs=59.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++||||||+|.||+..+..|.+. +++++ ++|++++.... .......+.+++.+. +|+|++|+|+.
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~----------~~~~~~~~~~~~~~~---~D~Vvi~tp~~ 69 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK----------TPVFDVADVDKHADD---VDVLFLCMGSA 69 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS----------SCEEEGGGGGGTTTT---CSEEEECSCTT
T ss_pred cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc----------cccccchhhhhhccc---cceEEEeCCCc
Confidence 46899999999999999999865 56655 77988654211 023344455555555 99999999998
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
...+- ..+.|..|.-+|++..
T Consensus 70 ~h~~~----a~~aL~aG~~vv~~~~ 90 (170)
T d1f06a1 70 TDIPE----QAPKFAQFACTVDTYD 90 (170)
T ss_dssp THHHH----HHHHHTTTSEEECCCC
T ss_pred ccHHH----HHHHHHCCCcEEEecC
Confidence 54332 3445678887776543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.96 E-value=3.7e-05 Score=65.62 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=64.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CC-CccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DL-PLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~-~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
..||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+.. .. ......+.+++ +. ||+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~-~~---adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT-AN---SKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG-TT---CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc-cc---ccEEEEe
Confidence 4689999999999999999999997 89999999887654432221100 00 11223344443 33 9999997
Q ss_pred cCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. .++++..++.+. .++.++|..||-.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPv 140 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPV 140 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCch
Confidence 64331 133334455553 4678888888843
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.89 E-value=7.1e-05 Score=62.75 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=64.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCC---CccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDL---PLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~---~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.||+|||+ |.+|+++|..|+..|. ++.++|.++.+.+.+--..... .. ......+..+..+. +|+|+++.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~-~~~~~~~~~~~~~~~~~~~---aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS-SCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh-hcCCCeEEcCCChHHHhCC---CCEEEECC
Confidence 38999995 9999999999998886 7999999876654432111100 00 01123344555555 99999986
Q ss_pred CCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+. .++++++.+.++ .+..+|+..||-.
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPv 120 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPV 120 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 4321 244555666665 5778888888743
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.88 E-value=2.5e-05 Score=69.32 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|+|-|+|++|..+|+.|.+.|.+|+++|.+++++......+. . .-+.+++... .||+++-|--...--
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-------~-~~~~~~~~~~--~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-------T-AVALEDVLST--PCDVFAPCAMGGVIT 97 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-------E-ECCGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-------c-ccCccccccc--cceeeeccccccccc
Confidence 57999999999999999999999999999999998877665432 2 2345565542 389888775544222
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
++. .+.++ -++|+...|.. .+.+...+.|.++|+.|++-
T Consensus 98 ~~~----a~~i~-ak~i~e~AN~p-~~~~~~~~~L~~rgI~~iPD 136 (201)
T d1c1da1 98 TEV----ARTLD-CSVVAGAANNV-IADEAASDILHARGILYAPD 136 (201)
T ss_dssp HHH----HHHCC-CSEECCSCTTC-BCSHHHHHHHHHTTCEECCH
T ss_pred HHH----Hhhhh-hheeeccCCCC-cchhhHHHHhcccceEEEeh
Confidence 223 33343 46788777764 34445667788999988753
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.88 E-value=4.8e-05 Score=63.65 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=57.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCC--Cccc-cCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDL--PLFG-FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~--~~~~-~~s~~e~~~~l~~~dvIil~vp 82 (474)
.||+|||+|.+|..+|..|+.++. ++.++|+++++++.......+...+ .... ..+.+++ + .+|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~-~---~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDV-K---DCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGG-T---TCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHh-C---CCceEEEecc
Confidence 589999999999999999999886 8999999988654433322211000 1111 2233333 3 3999999854
Q ss_pred CCh----h-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 83 AGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+. . ++++.+.+.++ .|..+++..||-
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNP 119 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 119 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecCh
Confidence 321 1 22222344443 467788888774
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.87 E-value=3.1e-05 Score=66.11 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=63.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CC-CccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DL-PLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~---~~-~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
..||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+.. .. ......+.+++ +. +|+|+++
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~-~~---adivvit 94 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS-AN---SKLVIIT 94 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG-TT---EEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh-cc---ccEEEEe
Confidence 4589999999999999999999886 89999999887654433221110 00 12233455544 33 9999988
Q ss_pred cCCCh-----------hHHHHHHHHHhc---ccCCCEEEecCCC
Q 011931 81 VKAGA-----------PVDETIKTLSAY---MEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~-----------~v~~vl~~l~~~---l~~g~iiId~st~ 110 (474)
...+. .--.++.++.+. ..++.+++..||-
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP 138 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence 74421 011222333332 3578888888883
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.86 E-value=5.3e-05 Score=63.67 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=62.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc---CCCC-ccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE---GDLP-LFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~---~~~~-~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......+. -... ...+.+.+++ +. ||+||++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l-~~---adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL-AD---ADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG-TT---CSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh-cc---ccEEEEec
Confidence 589999999999999999998874 8999999998765443222110 0011 1223344443 43 99999986
Q ss_pred CCCh-------------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGA-------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~-------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+. -++++...+.. ..|+.+++..||-.
T Consensus 78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~-~~p~aivivvtNPv 125 (146)
T d1hyha1 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE-SGFHGVLVVISNPV 125 (146)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSH
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEecCcH
Confidence 5321 02223334443 34788898888843
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.84 E-value=1.3e-05 Score=69.53 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=70.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-----------------------cCCH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-----------------------FRDP 64 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-----------------------~~s~ 64 (474)
.+|-|||+|..|..=++.....|-.|+++|+++++.+++.+.+... +.. ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~----i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF----ITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE----CCC-----------------------CCHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce----EEEeccccccccccccchhhcCHHHHHHHH
Confidence 4899999999999999999999999999999999998888765321 110 0112
Q ss_pred HHHHhhcCCCcEEEEecCCChh-HHHHH-HHHHhcccCCCEEEecCC
Q 011931 65 ESFVNSIQKPRVIIMLVKAGAP-VDETI-KTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 65 ~e~~~~l~~~dvIil~vp~~~~-v~~vl-~~l~~~l~~g~iiId~st 109 (474)
+.+.+.++++|+||.++--+-. ...++ ++....+++|.+|||.+-
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 2333446669999987743211 11122 667788999999999875
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.81 E-value=3.2e-05 Score=65.53 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=70.1
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
++.|+|.|..|+.+|.++...|-.|++++++|-+.-+..-.+ +. ..+.+|+++. +|+||.++.....+
T Consensus 25 ~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdG-------f~-v~~~~~a~~~---aDi~vTaTGn~~vI- 92 (163)
T d1v8ba1 25 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVDVI- 92 (163)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSSSB-
T ss_pred EEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcC-------Cc-cCchhHcccc---CcEEEEcCCCCccc-
Confidence 699999999999999999999999999999996544333222 33 4688899887 99999999876321
Q ss_pred HHHHHHHhcccCCCEEEecCCCC
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~ 111 (474)
-.+-...++.|.||.+.+...
T Consensus 93 --~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 93 --KLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp --CHHHHTTCCTTCEEEECSSTT
T ss_pred --cHHHHHHhhCCeEEEeccccc
Confidence 144567799999999988764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=3e-05 Score=67.02 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=75.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|.|+|+|-.+++++..|.+.|.+|+++||++++.+.+.+.....+ .+.. .+..+.. ...+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~-~~~~~~~--~~~~dliIN~Tp~G~~- 92 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELE--GHEFDLIINATSSGIS- 92 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGT--TCCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--cccc-ccccccc--ccccceeecccccCcc-
Confidence 57999999999999999999999999999999999998887643221 1222 2222221 2348999999987632
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
.+...--...+.++.+++|.--.+..+ .+.+..+.+|.
T Consensus 93 ~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~ 130 (170)
T d1nyta1 93 GDIPAIPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGS 130 (170)
T ss_dssp TCCCCCCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTC
T ss_pred cCCCCCcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCC
Confidence 111100123467889999987665433 34444556665
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.78 E-value=9e-05 Score=62.50 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=63.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~~-~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
.+||+|||+|.+|.++|..|...+. ++.+||+++++.+.......+ .+ ...+....+.+++ +. +|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~-~~---advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL-AG---ADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG-TT---CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc-CC---CcEEEEe
Confidence 4689999999999999998888775 899999998776544322111 00 0012223334444 33 9999998
Q ss_pred cCCCh--------------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 81 VKAGA--------------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 81 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
...+. .++++.+.+... .|+.+++..||--
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPv 128 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPV 128 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 75321 122333444443 4778888888853
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=0.00013 Score=63.00 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=51.3
Q ss_pred cCcEEEEcccHhHHHHH--HHHHHC----CCcEEEEeCChHHHHHHHHhhh----hcC-CCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLA--LNIAEK----GFPISVYNRTTSKVDETVERAK----KEG-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~~~~~----~~~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
.|||+|||+|..|.+++ ..|+.. +.++.++|+++++++....... ..+ ..++..+++.+|+++. +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 47999999999997644 334432 4599999999988764322111 000 1245677888998887 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+|+.++..+
T Consensus 79 ~Vv~~~~~g 87 (171)
T d1obba1 79 FVINTAMVG 87 (171)
T ss_dssp EEEECCCTT
T ss_pred eEeeecccc
Confidence 999987543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.72 E-value=4.1e-05 Score=61.75 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=77.6
Q ss_pred CcEEEEc----ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|+||| .+..|..+.++|.+.||+|..++++.+.+. +...+.+++|+-.. .|++++++|+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~------------G~~~y~sl~~lp~~---~D~vvi~vp~ 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIE------------GLKCYRSVRELPKD---VDVIVFVVPP 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET------------TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccccc------------Cccccccchhcccc---ceEEEEEeCH
Confidence 4699999 578999999999999999888887643321 36788899888776 8999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+.++++++... ....+++..++.. +++.+.+++.|+.+++
T Consensus 67 ~-~~~~~l~~~~~~-g~k~v~~~~g~~~----~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 67 K-VGLQVAKEAVEA-GFKKLWFQPGAES----EEIRRFLEKAGVEYSF 108 (116)
T ss_dssp H-HHHHHHHHHHHT-TCCEEEECTTSCC----HHHHHHHHHHTCEEEC
T ss_pred H-HHHHHHHHHHhc-CCceEEeccchhh----HHHHHHHHHcCCEEEc
Confidence 5 777888776653 3445666655533 3456677788998876
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.71 E-value=1.6e-05 Score=68.91 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=71.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|.|+|+|.++.+++..|.+.+-+|++++|++++.+.+.+...... ++....... ..+..+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~---~~~~~~diiIN~tp~g~~- 92 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS---IPLQTYDLVINATSAGLS- 92 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG---CCCSCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc---ccccccceeeeccccccc-
Confidence 47999999999999999999988899999999999998887653211 122222111 123459999999998732
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (474)
..........+.++.+++|..=..|..| .+.+..+..|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~ 131 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL 131 (171)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred ccccchhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence 2111111223456788989865545444 23344455665
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.63 E-value=0.00013 Score=61.06 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC--cEEEEeCChH
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~ 41 (474)
|||+|||+ |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 68999995 9999999999999884 9999999864
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.63 E-value=7.9e-05 Score=63.41 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=58.6
Q ss_pred cCcEEEEcccHhHHHH-HHHHHHCC-CcEE-EEeCChHH-HHHHHHhhhhcCCCCccc-cCCHHHHHhh--cCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQNL-ALNIAEKG-FPIS-VYNRTTSK-VDETVERAKKEGDLPLFG-FRDPESFVNS--IQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~l-A~~L~~~G-~~V~-v~dr~~~~-~~~l~~~~~~~~~~~~~~-~~s~~e~~~~--l~~~dvIil 79 (474)
++||||||+|.+|..+ ...|.... .++. +.+|+++. ...+.+.. ++.. +.+.+++.+. ..+.|+||+
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc------CCcccccceeeeeecccccccCEEEE
Confidence 3589999999999864 55554443 3554 66888653 22333322 1332 3345555442 223799999
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
++|++.++... .....++.|..|||.|+
T Consensus 78 ATpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 78 ATSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp CSCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred cCCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 99986544322 22334678999999997
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.63 E-value=5e-05 Score=72.47 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCcCcEEEEcccHhHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 5 KQLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 5 ~~~~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
....+++|||+|.++...+..|... . .+|.+|+|++++.+.+.+..... .+....++++.+.. +|+|+.|++
T Consensus 123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~---~~~~~~~~~~a~~~---aDiV~taT~ 196 (320)
T d1omoa_ 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR---GISASVQPAEEASR---CDVLVTTTP 196 (320)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT---TCCEEECCHHHHTS---SSEEEECCC
T ss_pred CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc---CCccccchhhhhcc---ccEEEEecc
Confidence 3446799999999999998888653 2 38999999999999888765432 24556677888877 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
....+ +. ...+++|..|+..++..|.
T Consensus 197 s~~P~---~~--~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 197 SRKPV---VK--AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp CSSCC---BC--GGGCCTTCEEEECSCCSTT
T ss_pred Ccccc---cc--hhhcCCCCeEeecCCcccc
Confidence 77543 21 2458899999998887654
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.62 E-value=2.7e-05 Score=74.70 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCcCcEEEEcccHhHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 4 GKQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 4 ~~~~~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.+...+++|||+|.++...+..+.. .+ -+|.+|||++++.+++.+......+..+..+.+++++++. +|+|++|+
T Consensus 125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~T 201 (340)
T d1x7da_ 125 RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVT 201 (340)
T ss_dssp CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECC
T ss_pred ccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeecc
Confidence 3445689999999999988887754 33 3899999999999998876542212346678999999998 99999988
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
++.. ...++. ...+++|..|.-.++-.|.
T Consensus 202 as~s-~~Pv~~--~~~l~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 202 ADKA-YATIIT--PDMLEPGMHLNAVGGDCPG 230 (340)
T ss_dssp CCSS-EEEEEC--GGGCCTTCEEEECSCCBTT
T ss_pred ccCC-CCcccc--hhhcCCCCEEeecccchhh
Confidence 6541 111221 2457899999888876654
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.61 E-value=0.00021 Score=64.83 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=72.3
Q ss_pred cCcEEEEcccHhHHH----HHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAGLAVMGQN----LALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~----lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
.+||||||+|.+|.. ....+.+. +++|. ++|+++++.+++.+..... ....+++++++.+. +..|+|++
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~iD~V~i 91 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVV 91 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEE
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc---cceeecchhhcccc-cccceeec
Confidence 468999999986543 34445443 56766 8899999998887764211 24557899999875 44789999
Q ss_pred ecCCChhHHHHHHHHHhcc---cCCCEEEecC-CCCchhHHHHHHHHHHc
Q 011931 80 LVKAGAPVDETIKTLSAYM---EKGDCIIDGG-NEWYENTERREKAMAEL 125 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l---~~g~iiId~s-t~~~~~~~~~~~~l~~~ 125 (474)
++|+....+.+...+.... ..-.++++-- .....+..++.+..+++
T Consensus 92 ~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~ 141 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 141 (237)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred cCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence 9998765555544443221 1224666632 11234555666555554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.54 E-value=6.3e-05 Score=64.70 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=73.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..+|.|||+|.++++++..|.+.|. +|++++|++++.+.+.+... ........ ..++|+||-|+|-+-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~------~~~~~~~~-----~~~~DliINaTpiGm 85 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGM 85 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh------hhhhhccc-----ccchhhheeccccCC
Confidence 3579999999999999999999997 79999999999998876542 12222211 123899999998541
Q ss_pred h--HHH---HHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 P--VDE---TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~--v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+. .+. ...++++.+|+|..-.+..+ .+.+..+++|...++
T Consensus 86 ~~~~~~~~l~~~--~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 86 KGGKEEMDLAFP--KAFIDNASVAFDVVAMPVET--PFIRYAQARGKQTIS 132 (167)
T ss_dssp TTSTTTTSCSSC--HHHHHHCSEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred cccccccccccc--HhhcCCcceEEEEeeccCCC--HHHHHHHHCCCeEEE
Confidence 0 000 000 01244678999987665433 244555677776554
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.52 E-value=3.2e-05 Score=66.85 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=70.4
Q ss_pred CCCCCCcCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
|+.++.+++|||||+|.||...+..|.+.. ..+.+++....+ +.. .. ......+.+|+.+. ++.|+|+
T Consensus 1 ~~~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~---~~----~~~~~~~~~e~l~~-~~iD~V~ 70 (172)
T d1lc0a1 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELG---SL----DEVRQISLEDALRS-QEIDVAY 70 (172)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCC---EE----TTEEBCCHHHHHHC-SSEEEEE
T ss_pred CCCCCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHH---Hh----hccCcCCHHHHHhC-CCcchhh
Confidence 788888899999999999999988876532 234444432211 000 00 11234578888864 4579999
Q ss_pred EecCCChhHHHHHHHHHhcccCC-CEEEecC-CCCchhHHHHHHHHHHcCCeE
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKG-DCIIDGG-NEWYENTERREKAMAELGLLY 129 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~ 129 (474)
+++|+....+- +...++ .| .++++-- +....+.+++.+..++.|..+
T Consensus 71 I~tp~~~H~~~-~~~al~---~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 71 ICSESSSHEDY-IRQFLQ---AGKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp ECSCGGGHHHH-HHHHHH---TTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred hcccccccccc-cccccc---cchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 99999755443 333332 33 3566631 223466777777667766543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=2.8e-05 Score=69.06 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=51.8
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~vp 82 (474)
.|+||.|+| .|.+|+.++..|+++||+|+++.|++++.......+. .+.. ..+.+++.+.+..+|+||.++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~-----~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-----HVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS-----EEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccc-----ccccccccchhhHHHHhcCCCEEEEEec
Confidence 467899999 7999999999999999999999999987543322111 1111 1234444444555999998875
Q ss_pred C
Q 011931 83 A 83 (474)
Q Consensus 83 ~ 83 (474)
.
T Consensus 77 ~ 77 (205)
T d1hdoa_ 77 T 77 (205)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.48 E-value=0.0014 Score=53.72 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCCCCCCccCh
Q 011931 311 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 390 (474)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~l~~ll~~~ 390 (474)
.|+|+-+|.++|.+....+++.+|++.+..++ ++|.+.+.++.+.+. -+|..++.-...+-+++.. +
T Consensus 2 vG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gid~~~~~~~l~~~~-~~S~~~~~~~~~~~~~~~~------~ 68 (133)
T d1vpda1 2 IGAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNFK------P 68 (133)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCCC------C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccchhhhhccchhhhccCC------C
Confidence 47889999999999999999999999997753 499999999999874 5788887754444333211 2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 429 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~ 429 (474)
.|.- .-...+++-+.+.|-+.|+|+|....+..+|..
T Consensus 69 ~f~~--~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~ 105 (133)
T d1vpda1 69 GFRI--DLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 105 (133)
T ss_dssp SSBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CchH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 2221 123456788999999999999999999987764
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.42 E-value=0.00017 Score=59.47 Aligned_cols=110 Identities=19% Similarity=0.038 Sum_probs=77.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhhCCC-CCCCcc
Q 011931 310 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNAD-LANLLV 388 (474)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~~~~~~~~-l~~ll~ 388 (474)
|.|+|+.+|.++|.+.++.+++++|++.+.+++ + +|.+.+.++-+.|. -+|+.++.......+.+. ..+--.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~----G--ld~~~~~eil~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~ 73 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN----G--LEAKVLAEIMRRSS-GGNWALEVYNPWPGVMENAPASRDY 73 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHTST-TCCHHHHHCCCSTTSSTTSGGGGTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C--CCHHHHHHHHHhcc-cchhhhhhhhhhhhccchhhhcCCC
Confidence 458899999999999999999999999998864 3 99999999998774 578887753211111110 000000
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011931 389 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFD 428 (474)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~ 428 (474)
++-|. +.-...+++-+.+.|-+.|+|+|+...+.+.|.
T Consensus 74 ~~~f~--~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~ 111 (134)
T d3cuma1 74 SGGFM--AQLMAKDLGLAQEAAQASASSTPMGSLALSLYR 111 (134)
T ss_dssp CSSSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCcc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 11121 112345678889999999999999999998665
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00088 Score=56.12 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=69.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC-ccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP-LFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~-~~~~~s~~e~~~~--l~~~dvIil~vp~~ 84 (474)
..|-|+|.|.+|..++..|.+.|++|++.|.++++..+..+..... +.. +..-.+..+..+. ++++|.||++++++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d 82 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-NADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-TCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-CcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence 3588999999999999999999999999999987655444432211 011 1122223333332 56799999999876
Q ss_pred hhHHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 85 APVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.....++. ....+.+. .+|+-..+. .. ...++..|+.++=
T Consensus 83 ~~n~~~~~-~~r~~~~~~~iia~~~~~--~~----~~~l~~~Gad~vi 123 (153)
T d1id1a_ 83 ADNAFVVL-SAKDMSSDVKTVLAVSDS--KN----LNKIKMVHPDIIL 123 (153)
T ss_dssp HHHHHHHH-HHHHHTSSSCEEEECSSG--GG----HHHHHTTCCSEEE
T ss_pred HHHHHHHH-HHHHhCCCCceEEEEcCH--HH----HHHHHHCCCCEEE
Confidence 33222222 23334344 566554442 22 2334455665543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=0.00046 Score=58.79 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=50.3
Q ss_pred CcEEEEcccHhHHHHHHHH-HH-C----CCcEEEEeCChHHHHHHHHhhhh--cCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNI-AE-K----GFPISVYNRTTSKVDETVERAKK--EGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L-~~-~----G~~V~v~dr~~~~~~~l~~~~~~--~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|||+|||+|..|.+++... +. . +.++.++|+++++.+........ ....++..+++..+..+. +|+||+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~---aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC---CCEEEE
Confidence 6999999999998877542 22 1 35899999999987654332110 001134556677777777 999999
Q ss_pred ecCCC
Q 011931 80 LVKAG 84 (474)
Q Consensus 80 ~vp~~ 84 (474)
+.-.+
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 88654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.0011 Score=55.28 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=59.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC---CCcEEEEeCChHHHHHHHHhhhhcCC-C---CccccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK---GFPISVYNRTTSKVDETVERAKKEGD-L---PLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~---G~~V~v~dr~~~~~~~l~~~~~~~~~-~---~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|||+||| .|.+|.++|..|+.+ +.++.++|..+. .+...-...+... . .+....+.+ ..+. +|+||+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~~~~~~~~~~~~~~~~-~~~~---aDvvvi 75 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDATP-ALEG---ADVVLI 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSCSSCEEEEECSSCCHH-HHTT---CSEEEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCccccCCcEEEcCCCcc-ccCC---CCEEEE
Confidence 7999999 599999999988643 468999998753 3322212111100 0 111233344 3444 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 80 LVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 80 ~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+--.+. -++++.+++.++- |..+||..||-.
T Consensus 76 taG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPv 121 (145)
T d2cmda1 76 SAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV 121 (145)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred CCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCc
Confidence 874321 2444555666544 677888888843
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.39 E-value=0.0001 Score=60.49 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.+|+|||+ |.+|..+.++|.+.| ++|+.++++.+.+. +...+.|+.|+-.. .|++++++|
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~------------G~~~y~sl~dlp~~---vDlvvi~vp 73 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQ------------GVKAYKSVKDIPDE---IDLAIIVVP 73 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEET------------TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccC------------CeEeecchhhcCCC---CceEEEecC
Confidence 46999996 899999999998766 68988887754321 36788899888766 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCC-Cc-hhH----HHHHHHHHHcCCeEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNE-WY-ENT----ERREKAMAELGLLYLG 131 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~-~~-~~~----~~~~~~l~~~g~~~v~ 131 (474)
+. .+.++++++...--+ .+++-.+.- .. ..- +++.+...+.|+++++
T Consensus 74 ~~-~~~~~~~~~~~~g~~-~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 74 KR-FVKDTLIQCGEKGVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp HH-HHHHHHHHHHHHTCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred hH-HhHHHHHHHHHcCCC-EEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence 75 788888877754323 334433211 11 111 2233444566888774
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.36 E-value=0.00022 Score=59.23 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=77.3
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+|+|||+ +..|..++.+|.++||+|..+|+..+.+ .+..++.+++|+-.. .|++++++|+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i------------~G~~~~~sl~dlp~~---iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------------LGRKCYPSVLDIPDK---IEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------TTEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc------------CCCcccccccccCcc---ceEEEEEeCH
Confidence 46999995 5799999999999999998888764321 136788899888766 9999999998
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+.++++++... ....+++..+... ++..+.+++.|+.+++
T Consensus 85 ~-~~~~~~~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 85 K-LTMEYVEQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVA 126 (139)
T ss_dssp H-HHHHHHHHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence 5 788888887653 3445666555543 2455666778998885
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.36 E-value=0.0015 Score=55.43 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=62.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc---ccCCHHHHHhhc-----CCCcEEEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF---GFRDPESFVNSI-----QKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~---~~~s~~e~~~~l-----~~~dvIil 79 (474)
.+|.|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.+... .+. ...+..+..+.+ ..+|+||-
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~---~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid 104 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV---TLVVDPAKEEESSIIERIRSAIGDLPNVTID 104 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE---EEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE---EEeccccccccchhhhhhhcccccCCceeee
Confidence 4799999999999999999999999999999999988777655321 010 111223322221 23788888
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
|+..+.. ++.....++++..++..+..
T Consensus 105 ~~g~~~~----~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 105 CSGNEKC----ITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp CSCCHHH----HHHHHHHSCTTCEEEECSCC
T ss_pred cCCChHH----HHHHHHHHhcCCceEEEecC
Confidence 8866432 33334455666666665543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.32 E-value=0.00054 Score=58.62 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=49.4
Q ss_pred cCcEEEEcccHhHHHHH-HHHHH--CC---CcEEEEeCChHHHHHHHHhh---h-hcC-CCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLA-LNIAE--KG---FPISVYNRTTSKVDETVERA---K-KEG-DLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA-~~L~~--~G---~~V~v~dr~~~~~~~l~~~~---~-~~~-~~~~~~~~s~~e~~~~l~~~d 75 (474)
..||+|||+|..|.+.+ ..+.. .. -+|.++|.++++++...... . ..+ ..++..+++..|+++. +|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---AD 79 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VD 79 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CS
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---CC
Confidence 45899999999987643 23332 12 38999999999876332211 1 000 1135567788888887 99
Q ss_pred EEEEecCCC
Q 011931 76 VIIMLVKAG 84 (474)
Q Consensus 76 vIil~vp~~ 84 (474)
+||++.-.+
T Consensus 80 ~Vvitag~~ 88 (167)
T d1u8xx1 80 FVMAHIRVG 88 (167)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCcC
Confidence 999998653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.28 E-value=0.00042 Score=62.35 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=79.3
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
-++|.|-|.|++|..+|+.|.+.|..|++.|.++..++.+..... .. ..+++++... .||+++-|--...-
T Consensus 39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g------~~-~~~~~~~~~~--~cDIl~PcA~~~~I 109 (230)
T d1leha1 39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------AD-AVAPNAIYGV--TCDIFAPCALGAVL 109 (230)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CE-ECCGGGTTTC--CCSEEEECSCSCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcC------Cc-ccCCcccccc--cccEeccccccccc
Confidence 357999999999999999999999999999999999888776542 22 2345554432 49999888765532
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.++. .+.++ -.+|+...|..+.+. +..+.|.++|+.|+.
T Consensus 110 ~~~~----~~~l~-ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iP 148 (230)
T d1leha1 110 NDFT----IPQLK-AKVIAGSADNQLKDP-RHGKYLHELGIVYAP 148 (230)
T ss_dssp STTH----HHHCC-CSEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred ChHH----hhccC-ccEEEecccCCCCCc-hHHHHHHhhCcEEEe
Confidence 2222 23343 368888887766443 556778889998875
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=8.8e-05 Score=57.15 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+||.|+|+|..|.++|+.|.+.|++|++||.++.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 35799999999999999999999999999997643
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00017 Score=62.83 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=74.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHH---hhhhcCCCC--ccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVE---RAKKEGDLP--LFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---~~~~~~~~~--~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.+|.|||+|-+|++++..|.+.|. +++++||++++.+++.. +........ +....+.+++...+..+|+||-|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 579999999999999999999987 78899999876665432 211100000 111223344444344499999999
Q ss_pred CCChhH--HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 82 KAGAPV--DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 82 p~~~~v--~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|.+..- .+.+..-...++++.+++|..-.+. .| .+.+..+.+|..+++
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~-~T-~ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVYNPH-MT-KLLQQAQQAGCKTID 148 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCCSSS-SC-HHHHHHHTTTCEEEC
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhcCcc-cc-HHHHHHHHCcCeEec
Confidence 965210 0000000234678899999975433 33 334445667776654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.0007 Score=57.85 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=74.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc-----CCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI-----QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l-----~~~dvIil~v 81 (474)
.+|.|+|+|.+|...+..+...|. +|++.|+++++++...+.+...- ......++.+..+.+ ..+|+||-|+
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~--~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV--LQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE--EECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccc--ccccccccccccccccccCCCCceEEEecc
Confidence 469999999999999999999998 79999999999987776554210 001123444443321 2479999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
..+. .++.....++++..++-.+........... .+-.+++.+++
T Consensus 106 G~~~----~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~G 150 (171)
T d1pl8a2 106 GAEA----SIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKG 150 (171)
T ss_dssp CCHH----HHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEE
T ss_pred CCch----hHHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEEE
Confidence 8753 344445566777777666654332222222 22335666664
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00041 Score=52.80 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=36.0
Q ss_pred CcEEEEcccHhHH-HHHHHHHHCCCcEEEEeCCh-HHHHHHHHhh
Q 011931 8 TRIGLAGLAVMGQ-NLALNIAEKGFPISVYNRTT-SKVDETVERA 50 (474)
Q Consensus 8 ~~IgiIGlG~mG~-~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~ 50 (474)
|||=|||.|-+|- ++|+.|.++|++|+++|+.+ +.+++|.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~G 46 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLG 46 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCC
Confidence 7899999999995 79999999999999999886 4455555544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.003 Score=53.52 Aligned_cols=94 Identities=13% Similarity=0.240 Sum_probs=66.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.+|.|+|+|.+|...++.+...|.++++.++++++.+.+.+.+... +.-..+........+..|++|.++..+..+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4699999999999999888889999999999999887766655421 222333444444445689999999876555
Q ss_pred HHHHHHHHhcccCCCEEEecCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st 109 (474)
... ...+.++-.++..+.
T Consensus 108 ~~~----~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 108 DDF----TTLLKRDGTMTLVGA 125 (168)
T ss_dssp HHH----HTTEEEEEEEEECCC
T ss_pred HHH----HHHHhcCCEEEEecc
Confidence 443 455666666666553
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.0017 Score=52.77 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=62.6
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
|||+|+|+ |+||+.++..+.+.|+++. .+|++.. ..++.+|+||=-..+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------~~~~~~DVvIDFS~p~- 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------EELDSPDVVIDFSSPE- 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------EECSCCSEEEECSCGG-
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------HHhccCCEEEEecCHH-
Confidence 68999995 9999999999999999876 4454311 0122389988776654
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGV 134 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pv 134 (474)
.+.+.++... +.+.-+|..||+...+..+..+.+. +.+..+-+|.
T Consensus 53 ~~~~~l~~~~---~~~~p~ViGTTG~~~~~~~~i~~~a-k~~pv~~a~N 97 (128)
T d1vm6a3 53 ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELS-KEVPVVQAYS 97 (128)
T ss_dssp GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHT-TTSEEEECSC
T ss_pred HHHHHHHHHH---hcCCCEEEEcCCCCHHHHHHHHHHH-hhCCEEeeec
Confidence 5666665443 3467788888987665544444443 3444555553
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.18 E-value=9.7e-05 Score=64.04 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=72.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++|-|||+|.++++++..|.+.| +|++++|++++.+.+.+..............+..++...+..+|+||.|+|.+..-
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~ 97 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP 97 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence 57999999999999999998777 99999999999988876432100000000001111222233489999999875211
Q ss_pred HHHHHHH--HhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 88 DETIKTL--SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 88 ~~vl~~l--~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
..-.... ...+.++.+++|..-.+..+ .+.+..+..|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 98 NIDVEPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN 141 (177)
T ss_dssp CCSSCCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred cccccchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence 1000000 12356788999987665443 234445566766654
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=0.0015 Score=53.41 Aligned_cols=122 Identities=8% Similarity=0.036 Sum_probs=84.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH-HHhhCCCCCCCccCh
Q 011931 312 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK-AYDRNADLANLLVDP 390 (474)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~gcii~s~ll~~~~~-~~~~~~~l~~ll~~~ 390 (474)
|+|+-+|.+.|.+..+.++.++|++.+.++. ++|+..+.++.+.|. -+|+.++.... ....+... +
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gld~~~~~~vl~~s~-~~s~~~~~~~p~~~~~~~~~------~ 68 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINASS-GRSNATENLIPQRVLTRAFP------K 68 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCBHHHHHTHHHHTTTSCCC------C
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhh-hhhhhhhhhhhHHHHHHhhh------h
Confidence 6788899999999999999999999997764 399999999998763 46777665332 22222211 2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh----hcCCCchhHHHHHHhhccC
Q 011931 391 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS----YRRERLPANLVQAQRDYFG 448 (474)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~a~~~gip~p~~~~al~y~~~----~~~~~~~~~~i~a~rd~fG 448 (474)
.|.- .-...+++-+...|-+.|+|+|....+.+.|.. ...+.-...++...++..|
T Consensus 69 ~f~~--~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~~g 128 (132)
T d2cvza1 69 TFAL--GLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGG 128 (132)
T ss_dssp SSBH--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHT
T ss_pred hhHH--HHHhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC
Confidence 2221 233556788999999999999999999876642 2233334555555554433
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.14 E-value=0.00077 Score=52.03 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=36.1
Q ss_pred cCcEEEEcccHhH-HHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhh
Q 011931 7 LTRIGLAGLAVMG-QNLALNIAEKGFPISVYNRTT-SKVDETVERA 50 (474)
Q Consensus 7 ~~~IgiIGlG~mG-~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~ 50 (474)
.++|=|||.|-.| +++|+.|.+.||+|+++|+.. ..++.+.+.+
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~G 53 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAG 53 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCC
Confidence 4689999999999 778999999999999999873 4455555544
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.13 E-value=0.0011 Score=57.13 Aligned_cols=94 Identities=26% Similarity=0.373 Sum_probs=59.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEE-eCC-hH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRT-TS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~-~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|+||||+| .|..|.-|.+.|.++- +++... .++ .. ++.......... ......+.+++.+. +|++|+|+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~---~~~~~~~~~~~~~~---~dvvf~a~ 74 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN---SILSEFDPEKVSKN---CDVLFTAL 74 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC---CBCBCCCHHHHHHH---CSEEEECC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcc---ccccccCHhHhccc---cceEEEcc
Confidence 67999998 8999999999998764 355544 222 11 222221111100 11223466677677 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
|.+... . +.+.. .+..|||.|+-.-
T Consensus 75 p~~~s~-~----~~~~~-~~~~VIDlSadfR 99 (176)
T d1vkna1 75 PAGASY-D----LVREL-KGVKIIDLGADFR 99 (176)
T ss_dssp STTHHH-H----HHTTC-CSCEEEESSSTTT
T ss_pred ccHHHH-H----HHHhh-ccceEEecCcccc
Confidence 997432 2 23333 6889999998764
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.09 E-value=0.0018 Score=55.30 Aligned_cols=101 Identities=12% Similarity=0.054 Sum_probs=61.8
Q ss_pred cCcEEEEcccHhHHH--HHHHHHHC----CCcEEEEeCChHH--HHHHHHhh---h-hcC-CCCccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVMGQN--LALNIAEK----GFPISVYNRTTSK--VDETVERA---K-KEG-DLPLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~--lA~~L~~~----G~~V~v~dr~~~~--~~~l~~~~---~-~~~-~~~~~~~~s~~e~~~~l~~ 73 (474)
+|||+|||+|..|.. ++..+... +-++.++|+++++ .+.+-... . ..+ ..++..+++..+..+.
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g--- 77 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 77 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---
Confidence 368999999987754 44444432 1389999998754 33222110 0 000 1134466777777776
Q ss_pred CcEEEEecCCChh-----------------------------------HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 74 PRVIIMLVKAGAP-----------------------------------VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 74 ~dvIil~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
+|+||++...+.. ++++...+.. ..|+.+++..||-.
T Consensus 78 aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~-~~pda~~i~vtNPv 149 (169)
T d1s6ya1 78 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEE-LCPDAWLINFTNPA 149 (169)
T ss_dssp CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECSSSH
T ss_pred CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhh-cCCCeEEEEeCChH
Confidence 9999999975531 2334445544 35888999988854
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.08 E-value=0.0021 Score=53.26 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=57.4
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCC--cEEEEeCCh--HHHH----HHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTT--SKVD----ETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~----~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvI 77 (474)
.||+||| .|.+|.++|..|..++. ++.++|++. ++.+ .+........ +.+ ...+++++ .. +|+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~--~~~i~~~~~~~~-~~---aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDS--NTRVRQGGYEDT-AG---SDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTC--CCEEEECCGGGG-TT---CSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccC--CceEeeCCHHHh-hh---cCEE
Confidence 3899999 69999999999999986 799999753 3332 1221111000 111 23355554 33 9999
Q ss_pred EEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCC
Q 011931 78 IMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 78 il~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+++.-.+ .. ++++.+.+... .++.+++..||-
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNP 121 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNP 121 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSS
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecCh
Confidence 9986422 11 22233444443 367788888774
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00037 Score=58.24 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=54.6
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCC-C---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
|.|||||| +|.+|+.+.+.|.++. | +++.+..+........ ..... .......+..+ .+. +|++|+|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~--~~~~~~~~~~~-~~~---~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTT--GTLQDAFDLEA-LKA---LDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCC--CBCEETTCHHH-HHT---CSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCc--eeeecccchhh-hhc---CcEEEEec
Confidence 56899999 5999999998877653 3 4555654433211111 00000 00111222233 344 99999999
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
|.+ ........+... ..+.+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 74 GGD-YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp CHH-HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred Cch-HHHHhhHHHHhc-CCCeecccCCccc
Confidence 975 444444444331 2346899999865
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.06 E-value=0.0003 Score=58.20 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=78.5
Q ss_pred CcEEEEcc----cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
.+|+|||+ +..|..+..+|.+.||++..++.++.. +. . .+..++.++.++-.. .|++++++|+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~----i-----~g~~~~~~l~~i~~~---iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EE----L-----FGEEAVASLLDLKEP---VDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SE----E-----TTEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-ce----e-----eceecccchhhccCC---CceEEEeccH
Confidence 36999996 789999999999999999999987531 11 1 135677888887665 8999999997
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
. .+.++++++... ....+++..+... .++.+.+++.|+.++.
T Consensus 81 ~-~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 81 S-ALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp H-HHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred H-HHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 4 777788776653 4567777665543 3456677788998875
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.05 E-value=0.00015 Score=60.59 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=55.5
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
.||||||| .|..|+-+.+.|.++.| ++.....+...-+.+..... .........+.... +|++|+++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~-----~~~~~~~~~~~~~~---~d~vf~a~p 73 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAES-----SLRVGDVDSFDFSS---VGLAFFAAA 73 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTE-----EEECEEGGGCCGGG---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccc-----cchhccchhhhhcc---ceEEEecCC
Confidence 47999998 59999999999987665 56554333221111100000 11111112222344 999999998
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+ ........+ ...|.+|||.|+..
T Consensus 74 ~~-~s~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 74 AE-VSRAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp HH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred cc-hhhhhcccc---ccCCceEEeechhh
Confidence 75 344443333 45789999999865
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.97 E-value=0.0015 Score=53.59 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCcCcEEEEcc----------cHhHHHHHHHHHHCCCcEEEEeCChHHH-------HHHHHhhhhcCCCCccccCCHHHH
Q 011931 5 KQLTRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKV-------DETVERAKKEGDLPLFGFRDPESF 67 (474)
Q Consensus 5 ~~~~~IgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~-------~~l~~~~~~~~~~~~~~~~s~~e~ 67 (474)
....||+|+|+ +.-...++..|.+.|++|.+||+.-+.. +.+....... +...+.++.++
T Consensus 11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~ 87 (136)
T d1mv8a3 11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHV---SSLLVSDLDEV 87 (136)
T ss_dssp SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHH---HTTBCSCHHHH
T ss_pred cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccc---cceeehhhhhh
Confidence 34568999998 4678889999999999999999743221 1111111000 13457899999
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
++. +|+||++++.++ ..+ +...+.++.+|+|+-+..+.
T Consensus 88 i~~---~D~ivi~t~h~~-f~~----l~~~~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 88 VAS---SDVLVLGNGDEL-FVD----LVNKTPSGKKLVDLVGFMPH 125 (136)
T ss_dssp HHH---CSEEEECSCCGG-GHH----HHHSCCTTCEEEESSSCCSS
T ss_pred hhh---ceEEEEEeCCHH-HHH----HHHHhcCCCEEEECCCCCCh
Confidence 998 999999999863 333 34456678999999887643
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.95 E-value=0.0017 Score=52.69 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=61.4
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCChh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~--l~~~dvIil~vp~~~~ 86 (474)
.|-|+|.|.+|..++..| +|++|.+.+.++++.+.+...+... +....+..+.... +++++.++++.+++..
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANF----VHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEE----EESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccc----cccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 477999999999999999 4678999999999988877654321 2222333444433 6679999999987633
Q ss_pred HHHHHHHHHhcccCC-CEEEecCC
Q 011931 87 VDETIKTLSAYMEKG-DCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g-~iiId~st 109 (474)
...++. ....+.|. .+++-..+
T Consensus 76 n~~~~~-~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 76 TIHCIL-GIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHH-HHHHHCSSSCEEEECSS
T ss_pred hHHHHH-HHHHHCCCceEEEEEcC
Confidence 222223 33334444 56655544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.94 E-value=0.0018 Score=54.44 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEE--eCChHHHHHHHHhhhhcCCC---CccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVY--NRTTSKVDETVERAKKEGDL---PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~~~~~~~~---~~~~~~s~~e~~~~l~~~ 74 (474)
|||+|||+ |.+|+++|..|+..+. ...++ +++.++.+............ .+..+++..+..+. +
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a 81 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD---A 81 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc---c
Confidence 48999996 9999999999997653 12333 34445544433222111000 23445566666666 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCCCchhHH
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEWYENTE 116 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~ 116 (474)
|+||++--.+ .. ++++...+....+++.+|+-.|| |-++.
T Consensus 82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~ 136 (154)
T d1y7ta1 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTN 136 (154)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHH
Confidence 9999987322 11 22333455555556677777776 44543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.86 E-value=0.004 Score=53.54 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=29.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEEE-EeCChHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISV-YNRTTSKV 43 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v-~dr~~~~~ 43 (474)
|-||||.|.|++|+.+++.+.++. ++|.. .|+++...
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~ 39 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE 39 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH
Confidence 568999999999999999999764 57665 46665443
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.79 E-value=0.0038 Score=53.36 Aligned_cols=38 Identities=11% Similarity=0.340 Sum_probs=29.2
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC-CcEE-EEeCChHHH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSKV 43 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~~ 43 (474)
|++||||.|.|++|+.+.+.+.+.. .+|. +.|+++...
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 4569999999999999999998654 5655 567766543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.77 E-value=0.0036 Score=52.45 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=60.0
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcCCC---CccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEGDL---PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~~~~---~~~~~~s~~e~~~~l~~~ 74 (474)
+||+|||+ |.+|.++|..|+..+. ++..+|.++. +.+.+.-........ .+....+..+..+. +
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 80 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD---L 80 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---C
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC---c
Confidence 59999995 9999999999986542 4678887653 333332211110000 24455677777777 9
Q ss_pred cEEEEecCCCh---------------hHHHHHHHHHhcccCCCEEEecCC
Q 011931 75 RVIIMLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 75 dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 109 (474)
|+||++-..+. .++++...+..+.++..++|..||
T Consensus 81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 99999874321 133344455554444445666666
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.77 E-value=0.00061 Score=56.92 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=53.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHC-CC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEK-GF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~-G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp 82 (474)
||||||| .|..|+-+.+.|.++ .| ++..+..+... .+........ .......+. +..+. +|+||+|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~--~~~~~~~~~-~~~~~---~DvvF~alp 73 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDA--GMLHDAFDI-ESLKQ---LDAVITCQG 73 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCC--CBCEETTCH-HHHTT---CSEEEECSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcc--eeeecccch-hhhcc---ccEEEEecC
Confidence 6899998 899999999888764 34 44444332211 0000000000 001111222 33344 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+ ....+...+... ..+.+|||.|+..
T Consensus 74 ~~-~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 74 GS-YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HH-HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred ch-HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 86 455555555432 2335899999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.75 E-value=0.0013 Score=56.56 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhc---CCCcEEEEecC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSI---QKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~~s~~e~~~~l---~~~dvIil~vp 82 (474)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.+... -+ ....+..+.+.++ ...|+||.++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~---~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD---ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE---EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc---cccccchhHHHHHHHHhhccCcceEEEccC
Confidence 469999999999999888888896 7999999999988777665321 01 0112334433333 23789999988
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.+..++.. ...++++..++..+.
T Consensus 106 ~~~~~~~a----~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 106 GSETLSQA----VKMVKPGGIISNINY 128 (174)
T ss_dssp CTTHHHHH----HHHEEEEEEEEECCC
T ss_pred CHHHHHHH----HHHHhcCCEEEEEee
Confidence 76444433 344556666666654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.61 E-value=0.0019 Score=55.72 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=57.7
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHC-CCcEE-EEeCC--h---HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRT--T---SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~--~---~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi 78 (474)
|+||+||| .|..|+-|.+.|.++ .+++. ++-++ . ++....................+....... +|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSAD---VDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTT---CCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcc---cceee
Confidence 78999999 899999999999987 45665 33322 1 122221111100000011122233333333 89999
Q ss_pred EecCCChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 79 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
+|+|++ ........+ ...+..|||.|.-.--
T Consensus 78 ~alp~~-~s~~~~~~~---~~~~~~vIDlSadfRl 108 (179)
T d2g17a1 78 LATAHE-VSHDLAPQF---LQAGCVVFDLSGAFRV 108 (179)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred ccccch-hHHHHhhhh---hhcCceeecccccccc
Confidence 999986 333333333 4578999999987643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00075 Score=57.55 Aligned_cols=95 Identities=14% Similarity=0.235 Sum_probs=61.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhh-cCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNS-IQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~-l~~~dvIil~vp~~~~ 86 (474)
.+|.|+|+|.+|...++.+...|.+|++.|+++++.+.+.+.+... +..+.+..+..+. .+..|+++.++.....
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 104 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH----YIATLEEGDWGEKYFDTFDLIVVCASSLTD 104 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCSTT
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE----EeeccchHHHHHhhhcccceEEEEecCCcc
Confidence 4799999999999988877788999999999999998887766421 1111122223322 2346888888765422
Q ss_pred HHHHHHHHHhcccCCCEEEecC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~s 108 (474)
. .++.....++++-.++..+
T Consensus 105 ~--~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 I--DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp C--CTTTGGGGEEEEEEEEECC
T ss_pred c--hHHHHHHHhhccceEEEec
Confidence 1 1233445555655555554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.57 E-value=0.001 Score=59.73 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=31.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.||.|||.|.+|.+.|..|+++|++|+++||++
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999863
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.55 E-value=0.0036 Score=56.97 Aligned_cols=86 Identities=14% Similarity=0.281 Sum_probs=58.2
Q ss_pred CcEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
+||++| | .+-+|.++|+.|++.|++|.+.+|++++++++.++....+ .+ +..+-.=+.+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--------------~~---~~~~~~Dv~~~~ 63 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--------------GH---AVAVKVDVSDRD 63 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTSHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEeeCCCHH
Confidence 478777 4 6679999999999999999999999998887765432110 00 122222234445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+++.+++.+.....+=+++|+....
T Consensus 64 ~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 64 QVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCccEEEecccc
Confidence 6677777777666566778876543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.49 E-value=0.0077 Score=54.38 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=60.1
Q ss_pred cCcEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
.-|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... . +..+-.=+.+.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~ 64 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------------A---ARYVHLDVTQP 64 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------------G---EEEEECCTTCH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------------c---ceEEEeecCCH
Confidence 3466666 5 67899999999999999999999999988877654321 1 22222224455
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.+++.+++++.....+=+++|+.....
T Consensus 65 ~~v~~~~~~~~~~~g~idilinnAG~~ 91 (244)
T d1nffa_ 65 AQWKAAVDTAVTAFGGLHVLVNNAGIL 91 (244)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCccc
Confidence 677778887777666668888876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.0025 Score=54.80 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=37.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 50 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 50 (474)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccccc
Confidence 479999999999999988888897 7999999999988776654
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.48 E-value=0.0084 Score=51.04 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=27.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCC-CcEE-EEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~ 41 (474)
|.+|||-|.|++|+.+.+.+.+.+ .+|. +.|+++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 568999999999999999988775 4665 5566654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.48 E-value=0.0041 Score=56.66 Aligned_cols=84 Identities=12% Similarity=0.235 Sum_probs=58.0
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
||++| |.+-+|.++|+.|++.|++|.+.+|+++++++..++....+ .. +..+..=+.+.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--------------~~---~~~~~~Dvs~~~~ 65 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--------------VE---ADGRTCDVRSVPE 65 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEeecCCHHH
Confidence 68877 57789999999999999999999999998887765432110 00 1122222344556
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++.+.....+=+++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 66 IEALVAAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEeccc
Confidence 77777777766655577877654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.43 E-value=0.0049 Score=48.59 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=56.0
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEecC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~~~---~~s~~e~~~~l~~~dvIil~vp 82 (474)
..+|.|||.|.+|..-++.|++.|.+|++++..... ...+.+.+ +++. ..+.+++ ..+++|+.++.
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~------~i~~~~~~~~~~dl----~~~~lv~~at~ 81 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG------MLTLVEGPFDETLL----DSCWLAIAATD 81 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT------SCEEEESSCCGGGG----TTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC------CceeeccCCCHHHh----CCCcEEeecCC
Confidence 357999999999999999999999999999876543 22333222 1221 1233333 23899888877
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. .+..-+.. ..++..++|+....
T Consensus 82 d~-~~n~~i~~---~a~~~~ilVNv~D~ 105 (113)
T d1pjqa1 82 DD-TVNQRVSD---AAESRRIFCNVVDA 105 (113)
T ss_dssp CH-HHHHHHHH---HHHHTTCEEEETTC
T ss_pred CH-HHHHHHHH---HHHHcCCEEEeCCC
Confidence 65 44433322 22334566665543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0037 Score=52.81 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=57.5
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||-+. +|.+++..|.+.|..|++++... .++.+...+ +|+||.++.-+..
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------------------~~l~~~~~~---ADivI~a~G~p~~ 93 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 93 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc---------------------chhHHHHhh---hhHhhhhccCccc
Confidence 4799999776 99999999999999999997542 244555666 9999999986643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+. ...+++|.+|||.+..
T Consensus 94 i~------~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 94 IP------GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred cc------ccccCCCcEEEecCce
Confidence 22 2468899999999865
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.0075 Score=54.40 Aligned_cols=82 Identities=13% Similarity=0.249 Sum_probs=57.8
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... . +..+.+=+.+..+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 64 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA-----------------N---GKGLMLNVTDPAS 64 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC-----------------C---CcEEEEEecCHHH
Confidence 46666 4 77899999999999999999999999988877654321 1 1222222445566
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|+....
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAGI 88 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCCC
T ss_pred hhhhhhhhhcccCCcceehhhhhh
Confidence 777777777766566778776543
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.41 E-value=0.0059 Score=46.96 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcc-hhhhHhhhcccccccccCCCcchHHHHh
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGEL-LSFLIEITADIFGIKDDKGDGYLVDKVL 262 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~-~s~~~~~~~~~l~~~~~~~~~~~~~~i~ 262 (474)
..++++|++.|.+.+..++.++|.+.+|++.| +|..++.+++. ..... .++. .+.-+-.|++.. +.
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g-~d~~~v~~~~~--~d~ri~~~~~------~~~pG~G~GG~C----lp 68 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVG-VDGREVMDVIC--QDHKLNLSRY------YMRPGFAFGGSC----LP 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHT--TCTTTTTSST------TCSCCSCCCSSS----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHh--cCcccccccc------ccCCcccCCccc----cc
Confidence 46889999999999999999999999999999 99999988862 11111 1110 011111133221 23
Q ss_pred hhcCCCccHHHHHHHHHHcCCCcccH
Q 011931 263 DKTGMKGTGKWTVQQAADLSVAAPTI 288 (474)
Q Consensus 263 ~~~~~k~tg~~~~~~a~~~gv~~p~~ 288 (474)
+|.. .....|.+.+++.|++
T Consensus 69 KD~~------al~~~a~~~~~~~~ll 88 (98)
T d1mv8a1 69 KDVR------ALTYRASQLDVEHPML 88 (98)
T ss_dssp HHHH------HHHHHHHHTTCCCTTG
T ss_pred hhHH------HHHHHHHHcCCChHHH
Confidence 3332 4567889999999888
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0049 Score=55.72 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=60.3
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|..+|..|+++|++|.++||++++++++.++.... -.. +-.+.+=+.+.+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--------------~~~---~~~~~~Dvs~~~~ 70 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--------------GAK---VHTFVVDCSNRED 70 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------TCC---EEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEeeCCCHHH
Confidence 45565 5 566999999999999999999999999988877643211 001 2233334455556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+++.+.....+=+++|+.+...
T Consensus 71 v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 71 IYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCceeEeecccc
Confidence 7777777777776778888876654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.38 E-value=0.0033 Score=53.11 Aligned_cols=44 Identities=9% Similarity=0.219 Sum_probs=38.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (474)
.+|.|+|+|.+|...+..+...|.+|.+.|+++++.+.+.+.+.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 47999999999999998888899999999999999887776553
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.34 E-value=0.007 Score=52.38 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.6
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (474)
++|-|.| .|.+|..+|+.|++.|.+|++.+|++++.+++.+..
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~ 67 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 67 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence 4577777 799999999999999999999999999988776643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.29 E-value=0.0069 Score=54.88 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=58.4
Q ss_pred CcEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.||++| | .+-+|.++|+.|++.|++|.+++|++++++++.++....+ .+ +..+..=+.+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--------------~~---~~~~~~Dvt~~~ 72 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--------------YE---SSGYAGDVSKKE 72 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--------------CC---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEccCCCHH
Confidence 367777 4 6789999999999999999999999998887765432110 00 222222234455
Q ss_pred hHHHHHHHHHhcccCCCEEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+++.+++++.....+=+++|+...
T Consensus 73 ~v~~~~~~~~~~~g~iDilvnnag 96 (251)
T d2c07a1 73 EISEVINKILTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHHHHHHHHHHCSCCCEEEECCC
T ss_pred HHHHHHHHHHHhcCCceeeeeccc
Confidence 677777777766666677777544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.27 E-value=0.023 Score=48.37 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=63.1
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-------cEEEEeCChH--HHHHHHHhhhhcCCC---CccccCCHHHHHhhcCCC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKKEGDL---PLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~~~~~~~~~~---~~~~~~s~~e~~~~l~~~ 74 (474)
.||.|+|+ |.+|.+++..|+.... .+.++|.+.. .++.+.-........ .+..+++..+..+. +
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---a 101 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 101 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---C
Confidence 37999996 9999999999987532 5667777653 333332211110000 23456677777776 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHHhcccCCCEEEecCCCCchhHHH
Q 011931 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEWYENTER 117 (474)
Q Consensus 75 dvIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~ 117 (474)
|+||++-..+ .. ++++...+..+.+++.+|+-.|| |-++..
T Consensus 102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t 157 (175)
T d7mdha1 102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNA 157 (175)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHH
Confidence 9999987332 11 23333455555555677777777 445443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0087 Score=54.22 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=56.8
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++... +..+..=+.+.++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------------~~~~~~Dvs~~~~ 65 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------------AVFILCDVTQEDD 65 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT---------------------EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC---------------------CeEEEccCCCHHH
Confidence 45555 5 68999999999999999999999999988877654321 1122222445567
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+=+++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 66 VKTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEeccc
Confidence 77777777766666678887664
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0063 Score=51.67 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=58.2
Q ss_pred CcEEEEcccH-hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
++|.|||-+. +|.++|..|++.|..|++++.... ++.+...+ +|+||.++..+.-
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~---------------------~l~~~~~~---aDivi~a~G~~~~ 95 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------HLDEEVNK---GDILVVATGQPEM 95 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHHHHTT---CSEEEECCCCTTC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccc---------------------cHHHHHhh---ccchhhccccccc
Confidence 4699999765 999999999999999999986432 34444555 9999999987643
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++ ...+++|.+|||.+...
T Consensus 96 i~------~~~vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 96 VK------GEWIKPGAIVIDCGINY 114 (170)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred cc------cccccCCCeEeccCccc
Confidence 32 34688999999998764
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0023 Score=54.22 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCcCcEEEEcc-cHhHHHHHHHHHHC-CCcEE-EEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 5 KQLTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 5 ~~~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
.+.+||+|+|+ |+||+.+++.+.+. ++++. ++++..... ..-.......+..++....+++++.+. +|+||=-
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~---~DViIDF 78 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFIDF 78 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc---cceEEEe
Confidence 35679999995 99999999988765 56665 667653211 000000000001134556677776666 9999887
Q ss_pred cCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHH
Q 011931 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA 121 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~ 121 (474)
..+. .+.+.++.. .+.+.-+|-.||+......+..+.
T Consensus 79 s~p~-~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~~i~~ 115 (162)
T d1diha1 79 TRPE-GTLNHLAFC---RQHGKGMVIGTTGFDEAGKQAIRD 115 (162)
T ss_dssp SCHH-HHHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHH
T ss_pred ccHH-HHHHHHHHH---HhccceeEEecCCCcHHHHHHHHH
Confidence 6653 555555433 445778888888875543333333
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=96.17 E-value=0.011 Score=53.68 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=56.1
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+++| | .+-+|.++|+.|++.|++|.+.+|++++++++.++.... . .++..+ =+.+.
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 69 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----------------G---FKVEASVCDLSSR 69 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CCceEEEeeCCCH
Confidence 45555 5 667999999999999999999999999888776543211 0 222222 23444
Q ss_pred hhHHHHHHHHHhccc-CCCEEEecCCC
Q 011931 85 APVDETIKTLSAYME-KGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~-~g~iiId~st~ 110 (474)
.+++.+++++...+. +=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 70 SERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCce
Confidence 566777777766554 45778876543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.14 E-value=0.012 Score=52.82 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.+... +..+.+=+.+.++
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~----------------------~~~~~~Dv~~~~~ 63 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG----------------------AHPVVMDVADPAS 63 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT----------------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CeEEEEecCCHHH
Confidence 45555 5 6779999999999999999999999988877665321 1122222345556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|+....
T Consensus 64 v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 64 VERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCceEEEECCcc
Confidence 777777777666556778876544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0081 Score=54.55 Aligned_cols=83 Identities=11% Similarity=0.199 Sum_probs=57.5
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.++.... . .+++.+. +.+.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 72 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----------------G---GQAFACRCDITSE 72 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEccCCCH
Confidence 67777 5788999999999999999999999999888776543211 0 2222222 3344
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++++.+++.+...+.+=+++|+....
T Consensus 73 ~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 73 QELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 56667777776666566777776543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.09 E-value=0.0091 Score=54.30 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=57.2
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
++-|.| .+.+|.++|..|++.|++|.+.+|++++++++.+.....+ .. +..+.+=+.+.+++
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~---~~~~~~D~s~~~~~ 70 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LN---VEGSVCDLLSRTER 70 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEeecCCHHHH
Confidence 355566 8889999999999999999999999988887765432210 00 22233334455567
Q ss_pred HHHHHHHHhcc-cCCCEEEecCCC
Q 011931 88 DETIKTLSAYM-EKGDCIIDGGNE 110 (474)
Q Consensus 88 ~~vl~~l~~~l-~~g~iiId~st~ 110 (474)
+++++++.... .+-+++|++...
T Consensus 71 ~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 71 DKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEeccccc
Confidence 77777776665 355677775544
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.09 E-value=0.014 Score=53.81 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=56.1
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIi--l~vp~~ 84 (474)
|+.|| |.|.+|.++|+.|++.|++|++.+|+.++.++..++... + .. .++.. .-+.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~-------------~-~g----~~~~~~~~D~~~~ 87 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS-------------Q-TG----NKVHAIQCDVRDP 87 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------------H-HS----SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-------------h-cC----CceEEEEecccCh
Confidence 77777 699999999999999999999999999887776553211 0 00 12222 223344
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.++..+......=+++|++...
T Consensus 88 ~~v~~~~~~~~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 88 DMVQNTVSELIKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHhhhhhhhccccchhhhhhhh
Confidence 45556666666555555777776544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.07 E-value=0.013 Score=53.26 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=57.4
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.+..... . .++..+ =+.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 66 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 66 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 45555 5 677999999999999999999999999888776543211 0 223222 23455
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.+++.+++.+.....+=+++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeehhhhc
Confidence 6777888777776666678887654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.07 E-value=0.013 Score=53.69 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++.. .. +..+..=+.+.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----------------DN---VLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----------------CC---eeEEecccccHHH
Confidence 34555 5 7899999999999999999999999988877655321 11 2233333444556
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++.+.....+=+++|+...
T Consensus 66 ~~~~~~~~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 66 QKQAASRCVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHhCCccccccccc
Confidence 67777777666666677777654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.05 E-value=0.0021 Score=58.31 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=31.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|+|+|||.|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 689999999999999999999999999999874
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=96.05 E-value=0.014 Score=52.99 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=54.9
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 88 (474)
+-|.| .+-+|.++|+.|++.|++|.+.||++++++++.++.. .. +..+.+=+.+.++++
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v~ 67 (254)
T d1hdca_ 8 VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----------------DA---ARYQHLDVTIEEDWQ 67 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----------------GG---EEEEECCTTCHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------Cc---eEEEEcccCCHHHHH
Confidence 44445 6679999999999999999999999988877665321 11 222222234455677
Q ss_pred HHHHHHHhcccCCCEEEecCCC
Q 011931 89 ETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+++.+.....+=+++|+....
T Consensus 68 ~~~~~~~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 68 RVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHcCCccEEEecCcc
Confidence 7777776665555677776543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.014 Score=52.85 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=56.3
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++.++..++... -. . .+++.+ =+.+.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------------~~-g---~~~~~~~~Dv~~~ 67 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE--------------KY-G---VETMAFRCDVSNY 67 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HH-C---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------Hh-C---CcEEEEEccCCCH
Confidence 45555 4 67799999999999999999999999887766543211 00 0 233222 23444
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.+++.+++++.....+=+++|+....
T Consensus 68 ~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 68 EEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56777777777666566788876543
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.018 Score=45.45 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=82.5
Q ss_pred cCcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 7 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
..||-|-|. |..|+--+..+.+.|-+|..-- +|.+- +.. ..++..+++.+|++++ ..+|.-++.||+..
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVaGV-tPgkg------G~~--~~giPVf~tV~eAv~~-~~~d~SvIfVPp~~ 76 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGV-TPGKG------GME--VLGVPVYDTVKEAVAH-HEVDASIIFVPAPA 76 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEE-CTTCT------TCE--ETTEEEESSHHHHHHH-SCCSEEEECCCHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEeee-ecCCC------CcE--EECCchHhhHHHHHHh-cCCeEEEEeeCHHH
Confidence 458999995 9999999999999998876332 33321 100 1147889999999988 46999999999987
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+.+++++.+...+ ..+++-+-..++.+..++.+.++.++..+++
T Consensus 77 a~dAi~EAi~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 77 AADAALEAAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp HHHHHHHHHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 7777777776544 2355555566667778888888888877664
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.97 E-value=0.012 Score=53.37 Aligned_cols=82 Identities=7% Similarity=0.113 Sum_probs=56.7
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++... . +-.+-.=+.+...
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 66 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE-----------------R---SMFVRHDVSSEAD 66 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT-----------------T---EEEECCCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------C---eEEEEeecCCHHH
Confidence 56666 4 77899999999999999999999999988877654311 0 1111111234456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++.+.....+=+++|+....
T Consensus 67 ~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 67 WTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCeEEecccc
Confidence 777777777666666788876654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0034 Score=54.08 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=32.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
..||+|||.|..|..-|..|+++||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 46899999999999999999999999999999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.95 E-value=0.013 Score=53.06 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=55.5
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.|| | .+-+|.++|+.|++.|++|.+.||++++++++.++... + +..+..=+.+.++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----~----------------~~~~~~Dvt~~~~ 65 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP----A----------------ACAIALDVTDQAS 65 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT----T----------------EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----c----------------eEEEEeeCCCHHH
Confidence 45555 4 68899999999999999999999999988877654311 0 1112222344456
Q ss_pred HHHHHHHHHhcccCCCEEEecCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++.+++++.....+=+++|+....
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 66 IDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCccEEEeeccc
Confidence 677777766665555677776543
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.94 E-value=0.037 Score=42.21 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011931 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 185 ~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
.++++|++.|.+.+..++.++|.+.+|++.| ++..++.+.+
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g-~d~~~v~~~~ 43 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRK-LNSHMIIQGI 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 5789999999999999999999999999999 9999888775
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.92 E-value=0.0026 Score=57.33 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=32.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+||.|||+|.-|..+|..|+++|++|++++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.88 E-value=0.0051 Score=52.42 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=59.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcE-EEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcC--CCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQ--KPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~--~~dvIil~vp~ 83 (474)
.+|.|+|+|.+|...+..+...|..+ .+.|+++++.+.+.+.+... -+. ...+..+.+.++. ..|+||.|+..
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~i~~~t~gg~D~vid~~G~ 106 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH---VINSKTQDPVAAIKEITDGGVNFALESTGS 106 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE---EEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE---EEeCCCcCHHHHHHHHcCCCCcEEEEcCCc
Confidence 46999999999999999888888754 57799999988877665321 010 1123444433332 36888888876
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.... +.....++++-.++-.+
T Consensus 107 ~~~~----~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 107 PEIL----KQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHHH----HHHHHTEEEEEEEEECC
T ss_pred HHHH----HHHHhcccCceEEEEEe
Confidence 5333 33344455555555443
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.018 Score=45.26 Aligned_cols=111 Identities=15% Similarity=0.068 Sum_probs=82.7
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.||-|-|. |.-|+--+..+.+.|-+|. +.... +. +.. ..++..+.+.+|+++. ..+|.-++-||++.
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPg--kg------G~~--~~giPVf~sV~eAv~~-~~~~~SvIfVPp~~ 75 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPG--KG------GTT--HLGLPVFNTVREAVAA-TGATASVIYVPAPF 75 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT--CT------TEE--ETTEEEESSHHHHHHH-HCCCEEEECCCGGG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccC--CC------Ccc--cCCCchhhHHHHHHHH-hCCCeEEEeccHHH
Confidence 58999996 9999999999999998876 44432 21 110 1147889999999887 35899999999988
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+.+++++.+...+ ..+++-+-..++.+..++.+.++.++..+++
T Consensus 76 a~dA~~EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 76 CKDSILEAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp HHHHHHHHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence 7888877776544 3455566666777888888888888877663
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.85 E-value=0.022 Score=51.32 Aligned_cols=85 Identities=8% Similarity=0.148 Sum_probs=59.2
Q ss_pred CcEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-|+.+| |.+-+|.++|+.|++.|++|.+.+|++++.+++.+.... . .. +..+-.=+.+.+
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------~----~~---~~~~~~Dv~~~~ 67 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----------P----DQ---IQFFQHDSSDED 67 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------T----TT---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------C----Cc---EEEEEccCCCHH
Confidence 357777 578899999999999999999999999988776654310 0 01 222222244556
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+++.+++.+.....+=+++|+....
T Consensus 68 ~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 68 GWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCceEEEecccc
Confidence 7777777777766666788886644
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0048 Score=48.65 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
..||||||.|..|+.|+....+.|++|.++|++++
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 45899999999999999999999999999999865
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.02 Score=51.79 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=59.0
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+.+| |.+.+|.++|+.|++.|++|.+++|++++++++.++....+ .. .+++.+ =+.+.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~~---~~~~~~~~Dls~~ 73 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--------------YP---GTLIPYRCDLSNE 73 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CS---SEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEEEccCCCH
Confidence 56666 58899999999999999999999999999888776543210 00 233322 23455
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.++.+++.+.....+=+++|++...
T Consensus 74 ~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 74 EDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEecccc
Confidence 66777777777666555777776544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.82 E-value=0.019 Score=52.19 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=59.8
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+++| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . + . .++..+ =+.+.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvt~~ 69 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG------V-S------E---QNVNSVVADVTTD 69 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------C-C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------c---CceEEEEccCCCH
Confidence 67777 68899999999999999999999999998888776542210 0 0 0 122222 24455
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++.+.....+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 70 AGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHHHHhCCCCEeeccccc
Confidence 56777777777766666788887654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.80 E-value=0.023 Score=51.45 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=57.3
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
|+.|| | .+-+|.++|+.|++.|++|.+.||+++++++..+..... ... .+++.+. +.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--------------~~~---~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET--------------APD---AEVLTTVADVSDE 67 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------CTT---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------CCC---CeEEEEeccCCCH
Confidence 45565 4 667999999999999999999999999887765533210 011 2333332 3445
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.+++.+++++...+.+=+++|+...
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 5677777777776666678887654
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.028 Score=52.02 Aligned_cols=88 Identities=15% Similarity=0.311 Sum_probs=60.3
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~ 84 (474)
|+++| |.+-+|.++|+.|++.|++|.+.+|+++++++..++.... . . +. . ..+++.+.+ .+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~----~--~----~~-~---~~~~~~~~~Dvs~~ 78 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN----L--P----PT-K---QARVIPIQCNIRNE 78 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----S--C----TT-C---CCCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----h--c----cc-c---CceEEEEeccCCCH
Confidence 56666 4778999999999999999999999999888776543210 0 0 00 0 134444433 445
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
++++.+++.+.....+=+++|+....
T Consensus 79 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 79 EEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 66777777777766667888886554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0024 Score=46.91 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=31.9
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|++|||||.|..|+-|+..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 46899999999999999999999999999998754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.019 Score=52.00 Aligned_cols=118 Identities=13% Similarity=0.003 Sum_probs=77.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|-=+|+|. | .++..+++.|.+|+++|.+++.++...+..... +.+.. ...+..+.... ...|+|+..+.. ..
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~~~~-~~fD~V~ani~~-~~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAALPF-GPFDLLVANLYA-EL 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHHGGG-CCEEEEEEECCH-HH
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHc-CCceeEEeccccccccc-cccchhhhcccc-cc
Confidence 4688899997 4 355667888999999999999887776543322 11121 23455554332 347998877654 36
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
...++..+...|+||..++- |.........+.+.++..|+..+.
T Consensus 197 l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 67777888888988876653 222334556677778888887654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.74 E-value=0.0042 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (474)
.||+|||.|..|...|..|+++|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 589999999999999999999999 5999998864
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.73 E-value=0.0073 Score=52.90 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEE--EeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEec
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISV--YNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~v 81 (474)
+|++|-|.| .|.+|+.++..|+++|++|.+ ..|++++...+...... +. -..+.+++.+.++.+|.|+.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADV-----FIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTE-----EECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEE-----EEeeeccccccccccccceeeEEEE
Confidence 578999998 799999999999999987554 56888766544321100 11 1234444444455589888776
Q ss_pred CC
Q 011931 82 KA 83 (474)
Q Consensus 82 p~ 83 (474)
..
T Consensus 77 ~~ 78 (252)
T d2q46a1 77 SA 78 (252)
T ss_dssp CC
T ss_pred ee
Confidence 43
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.68 E-value=0.067 Score=43.29 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=60.4
Q ss_pred cEEEEc-ccHhHHHHHHHHHH-CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
||+|+| .|+||+.++..+.+ .++++. .+|+... +..... ..+|+||=...+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~----------------------~~~~~~--~~~DvvIDFS~p~- 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP----------------------LSLLTD--GNTEVVIDFTHPD- 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC----------------------THHHHT--TTCSEEEECCCTT-
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc----------------------hhhhcc--ccCCEEEEcccHH-
Confidence 799999 69999999988765 456765 5564321 111111 1289998877664
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCCchhHHH-HHHHH-HHcCCeEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTER-REKAM-AELGLLYLGMGV 134 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l-~~~g~~~v~~pv 134 (474)
.+.+.++... +.|.-+|-.||+......+ +.+.+ +.+++..+-+|-
T Consensus 56 ~~~~~~~~~~---~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apN 103 (135)
T d1yl7a1 56 VVMGNLEFLI---DNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN 103 (135)
T ss_dssp THHHHHHHHH---HTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSC
T ss_pred HHHHHHHHHH---hcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCC
Confidence 5666665444 4577788888887544333 33322 244565555553
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.67 E-value=0.02 Score=52.63 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=70.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEe-----------CChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYN-----------RTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d-----------r~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~d 75 (474)
-++|.|=|.|++|...|+.|.+.|..|+.++ .+.+.+.+..........+.- ...+..++... .||
T Consensus 36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~D 112 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPK-AKIYEGSILEV--DCD 112 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTT-SCBCCSCGGGC--CCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccc-cccCCcccccC--Ccc
Confidence 3579999999999999999999999887553 344555555443211000000 01122333331 499
Q ss_pred EEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 76 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
+++-|--... +. .+.++.+ .-++|+..+|.+. +.+..+.|.++|+.|++
T Consensus 113 IliPaA~~~~-I~---~~~a~~l-~ak~I~EgAN~P~--t~eA~~~L~~~gI~viP 161 (293)
T d1hwxa1 113 ILIPAASEKQ-LT---KSNAPRV-KAKIIAEGANGPT--TPQADKIFLERNIMVIP 161 (293)
T ss_dssp EEEECSSSSC-BC---TTTGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred EEeecccccc-cc---HHHHHHH-hhCEEeccCCCCC--CcchHHHHHHCCCEEeC
Confidence 9988765542 11 2233444 3468888888763 34556778899998875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.65 E-value=0.027 Score=51.34 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=58.7
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.+.....+ . + . .++..+. +.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG------V-S------E---KQVNSVVADVTTE 69 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------C-C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------C---CceEEEEccCCCH
Confidence 45666 57889999999999999999999999999888776543210 0 0 0 1232222 3455
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..++.+++.+.....+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 56777777777666666788876543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.65 E-value=0.035 Score=47.08 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=39.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (474)
..|.|+|+|.+|...++.+...|. +|++.|+++++++...+.+.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 359999999999999999999995 79999999999988777664
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.60 E-value=0.025 Score=51.44 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=57.6
Q ss_pred CcEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
-|+.+| |.+-+|.++|+.|++.|++|.+.||++++++++.++.... .. ...+-+=+.+.+
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~~~~ 67 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---------------DV---ISFVHCDVTKDE 67 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---------------TT---EEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---------------Cc---eEEEEccCCCHH
Confidence 356666 5778999999999999999999999999888877653210 00 111212234445
Q ss_pred hHHHHHHHHHhcccCCCEEEecCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+++.+++.+.....+=+++|+...
T Consensus 68 ~v~~~~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 68 DVRNLVDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCcceeccccc
Confidence 677777777766666677877654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.58 E-value=0.03 Score=51.16 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=56.8
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.|| |.+-+|.++|+.|++.|++|.+.||++++++++.++....+ .. . .. +..+..=+.+..+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~~----~----~~---~~~~~~Dv~~~~~ 70 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---VP----A----EK---INAVVADVTEASG 70 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CC----G----GG---EEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CC----C----cc---eEEEEeeCCCHHH
Confidence 45566 57789999999999999999999999998887776543210 00 0 00 1222222344456
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
++.+++++.....+=+++|+...
T Consensus 71 v~~~~~~~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 71 QDDIINTTLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCceEEEeecc
Confidence 77777777666655577777643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.0099 Score=50.42 Aligned_cols=92 Identities=8% Similarity=0.099 Sum_probs=62.1
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.+|.|.|. |.+|....+.+...|.+|++.++++++.+.+.+.+... +.-+.+..+.....+.+|+||-++.+ .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~~G~--~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEVRGK--E 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEECSCT--T
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce----eeehhhhhhhhhccccccccccccch--h
Confidence 46889895 99999998888888999999999999888877765421 22122333333444568999988753 3
Q ss_pred HHHHHHHHHhcccCCCEEEecCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (474)
+ +.....+.++-.++..+.
T Consensus 103 ~----~~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 103 V----EESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp H----HHHHTTEEEEEEEEEC--
T ss_pred H----HHHHHHHhcCCcEEEEeC
Confidence 3 334556667666766654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.011 Score=49.45 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=38.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (474)
.+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+.+.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 47999999999999988888899999999999999887766543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.45 E-value=0.02 Score=52.21 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=32.2
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
+++||.|+| .|.+|+.++..|+++||+|++.+|++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 457899999 699999999999999999999998753
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=95.44 E-value=0.032 Score=50.46 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=53.4
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKA 83 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~ 83 (474)
|+.+| |.+-+|.++|+.|++.|++|.+.+|+ ++..+++.+.... .. . .+++.+. +.+
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--------------~~-g---~~~~~~~~Dv~~ 66 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA--------------QH-G---VKVLYDGADLSK 66 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH--------------HH-T---SCEEEECCCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHH--------------hc-C---CcEEEEECCCCC
Confidence 36666 57779999999999999999999997 4555554432210 00 1 2333322 334
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++++.+++++.....+=+++|+....
T Consensus 67 ~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 67 GEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 456667777766666556777776543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.43 E-value=0.0051 Score=56.42 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=32.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+|.|||+|..|..+|..|+++|++|++++++++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999999874
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.43 E-value=0.021 Score=49.03 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVK 82 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp 82 (474)
++.|||||| .|..|+-|.+.|.++- +++.....+...-+.+.+........... .....++.... +|++|+|+|
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Dvvf~alp 80 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSN---VDAVFCCLP 80 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGG---CSEEEECCS
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcc---cceeeeccc
Confidence 356899998 8999999999998763 36554432222111121111100000011 11122233344 999999999
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
.+.. .. +.+.+.....+||.+....
T Consensus 81 ~~~s-~~----~~~~l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 81 HGTT-QE----IIKGLPQELKIVDLSADFR 105 (183)
T ss_dssp SSHH-HH----HHHTSCSSCEEEECSSTTT
T ss_pred cchH-HH----HHHHHHhcCcccccchhhh
Confidence 9733 32 3344445556666665543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.018 Score=51.65 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=35.2
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (474)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 344556 567999999999999999999999999888877654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.026 Score=50.63 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=35.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (474)
++-|.| .+.+|.++|+.|++.|++|.+.||++++++++.++.
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc
Confidence 354555 778999999999999999999999999988877654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.37 E-value=0.019 Score=51.56 Aligned_cols=115 Identities=10% Similarity=0.146 Sum_probs=69.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEe-CC----------hHHHHHHHH--------hhhhcCCCCccccCCHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYN-RT----------TSKVDETVE--------RAKKEGDLPLFGFRDPESF 67 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d-r~----------~~~~~~l~~--------~~~~~~~~~~~~~~s~~e~ 67 (474)
-.+|.|=|.|++|+.+|+.|.+.|.+|+.++ .+ .+.+.+..+ ..... .+.....+.+++
T Consensus 31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i 108 (242)
T d1v9la1 31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK--DNAEFVKNPDAI 108 (242)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT--SCCCCCSSTTGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc--cCceEeeCcchh
Confidence 3579999999999999999999999987554 22 222221110 00000 012223344555
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
... +||+++-|-..+. +. .+..+.+ .-++|+..+|.+. +.+..+.|.++|+.|++-
T Consensus 109 ~~~--~~DIliPcA~~~~-I~---~~~a~~i-~ak~IvegAN~p~--t~~a~~~L~~rgI~~~PD 164 (242)
T d1v9la1 109 FKL--DVDIFVPAAIENV-IR---GDNAGLV-KARLVVEGANGPT--TPEAERILYERGVVVVPD 164 (242)
T ss_dssp GGC--CCSEEEECSCSSC-BC---TTTTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEECH
T ss_pred ccc--cccEEeecchhcc-cc---HHHHHhc-ccCEEEecCCCCC--ChhHHHHHHhCCeEEeCc
Confidence 442 4999998876542 11 2223444 3478888888763 344467788999988753
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=95.30 E-value=0.03 Score=50.75 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=51.6
Q ss_pred cEEEEcc-c--HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 9 RIGLAGL-A--VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 9 ~IgiIGl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
++-|.|. | -+|.++|+.|++.|++|.+.+|+++..+.+.+. .+....+.++..-+....
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l------------------~~~~~~~~~~~~d~~~~~ 68 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPI------------------AQELNSPYVYELDVSKEE 68 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHH------------------HHHTTCCCEEECCTTCHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH------------------HhhCCceeEeeecccchh
Confidence 3666675 5 499999999999999999999986432222211 111111444444445555
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.++++++.+...+.+-+++|......
T Consensus 69 ~~~~~~~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 69 HFKSLYNSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCCC
T ss_pred hHHHHHHHHHHHcCCCCeEEeecccc
Confidence 56666666666555555666555443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.031 Score=50.38 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=59.8
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++.++..+..... ... .. +..+.+=+.+.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------~~~----~~---~~~~~~Dv~~~~~ 68 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ--------FEP----QK---TLFIQCDVADQQQ 68 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--------SCG----GG---EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--------cCC----Cc---EEEEEeecCCHHH
Confidence 45666 4 677999999999999999999999999888776543210 000 00 1222223445566
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCc
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (474)
++++++.+.....+=+++|+......
T Consensus 69 v~~~~~~~~~~~G~iDilVnnAg~~~ 94 (254)
T d2gdza1 69 LRDTFRKVVDHFGRLDILVNNAGVNN 94 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCcCeecccccccc
Confidence 77788777776666678888766544
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.23 E-value=0.024 Score=51.44 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=54.1
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+.+| |.+-+|.++|+.|++.|++|.+.+|+++++++..++.... . .++..+ =+.+.
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 69 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----------------G---FQVTGSVCDASLR 69 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEeccCCCH
Confidence 56666 5777999999999999999999999999888776543211 0 122222 23344
Q ss_pred hhHHHHHHHHHhcc-cCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYM-EKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l-~~g~iiId~st~ 110 (474)
.+++.+++.+.... .+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 70 PEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcccccccccc
Confidence 45666666665544 234667766543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.028 Score=51.23 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=60.6
Q ss_pred CcEEEE--cccHhHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 8 TRIGLA--GLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiI--GlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
++|++| |.+-+|..+|+.|++. |+.|.+++|++++.++..++....+ .. +.++.+=+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~~---~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------LS---PRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------CC---CEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEEecCCH
Confidence 579999 7889999999999975 8999999999999887776542110 11 34444445555
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+.++.+.+.+.....+=+++|+....
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAGi 91 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAGI 91 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 66777777776655444677776543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.23 E-value=0.037 Score=49.43 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=58.1
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCc-------EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFP-------ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~-------V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
+|.+| | .+-+|.++|+.|++.|++ |.+++|++++++++.++....+ .. +..+-.
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--------------~~---~~~~~~ 64 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--------------AL---TDTITA 64 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--------------CE---EEEEEC
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--------------Cc---EEEEEe
Confidence 56555 5 577999999999999997 8999999998887765432110 00 222222
Q ss_pred ecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
=+.+.++++.+++.+.....+=+++|+....
T Consensus 65 Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 65 DISDMADVRRLTTHIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp CTTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence 3455567777777777766666788876654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.21 E-value=0.0073 Score=56.63 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=31.8
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
++||.|||+|.-|...|..|+++|++|++++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4689999999999999999999999999999875
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.19 E-value=0.0041 Score=52.10 Aligned_cols=91 Identities=9% Similarity=0.130 Sum_probs=52.1
Q ss_pred cEEEEcc-cHhHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 9 RIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 9 ~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
||||||+ |..|.-|.+.|.++.+ ++.....+...-+.+..... ........++.... .|++++++|..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~-----~~~~~~~~~~~~~~---~d~~f~~~~~~ 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETAFEG---VDIALFSAGSS 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTE-----EEEEEECCTTTTTT---CSEEEECSCHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCC-----cccccccchhhhhh---hhhhhhccCcc
Confidence 7999995 9999999999988865 33334322211110000000 01111222222333 89999999875
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
.. ..... .....|..|||.|+-.
T Consensus 75 ~s-~~~~~---~~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 TS-AKYAP---YAVKAGVVVVDNTSYF 97 (154)
T ss_dssp HH-HHHHH---HHHHTTCEEEECSSTT
T ss_pred ch-hhHHh---hhccccceehhcChhh
Confidence 32 22222 2345799999999876
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.19 E-value=0.022 Score=51.65 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=54.1
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~--vp~~ 84 (474)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.++..++... + .. .+++.+. +.+.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------------~-~g----~~~~~~~~Dv~~~ 71 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK-------------E-FG----VKTKAYQCDVSNT 71 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH-------------H-HT----CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-------------H-hC----CceEEEEccCCCH
Confidence 55565 4 66799999999999999999999998877665543211 0 00 2222222 3444
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
+.++.+++++.....+=+++|+...
T Consensus 72 ~~v~~~~~~~~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 72 DIVTKTIQQIDADLGPISGLIANAG 96 (260)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcEeccccc
Confidence 5666677776665555567777554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.18 E-value=0.047 Score=46.16 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=50.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccC-C--HHHHHhhc--CCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFR-D--PESFVNSI--QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~-s--~~e~~~~l--~~~dvIil~v 81 (474)
.+|.|+|+|.+|...++.+...|. +|.+.|+++++.+...+.+... -+.... + .++..... ...|++|.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~---~i~~~~~d~~~~~~~~~~~~~G~d~vid~~ 105 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE---CLNPKDYDKPIYEVICEKTNGGVDYAVECA 105 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE---EEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence 469999999999999999988886 6889999999998877765421 011111 1 22332221 2368888887
Q ss_pred CCC
Q 011931 82 KAG 84 (474)
Q Consensus 82 p~~ 84 (474)
...
T Consensus 106 g~~ 108 (174)
T d1p0fa2 106 GRI 108 (174)
T ss_dssp CCH
T ss_pred CCc
Confidence 664
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.18 E-value=0.0078 Score=54.50 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=30.2
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.|.|||.|.+|.+.|..|+++|++|+++|++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 39999999999999999999999999999874
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.09 E-value=0.049 Score=48.89 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=50.9
Q ss_pred EEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 10 IGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 10 IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
+.+| | .+-+|.++|+.|++.|++|.+.||+++..+. .+... ...+-+=+.+..++
T Consensus 7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~~~----------------------~~~~~~Dv~~~~~v 63 (248)
T d2d1ya1 7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEAIG----------------------GAFFQVDLEDERER 63 (248)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHHHT----------------------CEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcC----------------------CeEEEEeCCCHHHH
Confidence 4455 4 8899999999999999999999999875432 22210 12222223444567
Q ss_pred HHHHHHHHhcccCCCEEEecCC
Q 011931 88 DETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st 109 (474)
+.+++++.....+=+++|+...
T Consensus 64 ~~~~~~~~~~~G~iDiLVnnAG 85 (248)
T d2d1ya1 64 VRFVEEAAYALGRVDVLVNNAA 85 (248)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHhcCCCCeEEEeCc
Confidence 7777777666655577777543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.08 E-value=0.0077 Score=54.40 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=31.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
+||.|||.|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999874
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.06 E-value=0.009 Score=52.50 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=30.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (474)
+||.|||.|.-|.+.|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 479999999999999999999996 799999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.05 E-value=0.0096 Score=50.22 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHH-HHHhhc--CCCcEEEEec
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPE-SFVNSI--QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~-e~~~~l--~~~dvIil~v 81 (474)
.+|.|+|+ |.+|...+..+...|. +|++.++++++.+.+.+.+... -+. ...++. +..+.. ...|+||-|+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~~d~vid~~ 105 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY---VINASMQDPLAEIRRITESKGVDAVIDLN 105 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE---EEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce---eeccCCcCHHHHHHHHhhcccchhhhccc
Confidence 46999995 9999998888887884 8999999999988877665321 011 111222 222211 2368888888
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.... .++.....++++-.++..+
T Consensus 106 g~~~----~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 106 NSEK----TLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CCHH----HHTTGGGGEEEEEEEEECC
T ss_pred ccch----HHHhhhhhcccCCEEEEec
Confidence 6543 3344455666666666554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.029 Score=51.01 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=34.0
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
+-|.| .+-+|.++|+.|++.|++|.+.+|+.++++++.++
T Consensus 17 alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 44445 56699999999999999999999999998877654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.99 E-value=0.039 Score=49.31 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=54.3
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKAG 84 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~~ 84 (474)
|+.+| | .+.+|.++|+.|++.|++|.+.+|+.+++++..++.. .+++.+ =+.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dls~~ 63 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----------------------AEAIAVVADVSDP 63 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CceEEEEecCCCH
Confidence 44555 5 6669999999999999999999999988776655321 122221 23444
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
..++..++.+.....+=+++|+...
T Consensus 64 ~~i~~~~~~i~~~~g~iDiLinnAg 88 (241)
T d2a4ka1 64 KAVEAVFAEALEEFGRLHGVAHFAG 88 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEGGG
T ss_pred HHHHHHHHHHHHHhCCccEeccccc
Confidence 5677777777766666677777543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.97 E-value=0.0075 Score=55.54 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=31.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.||.|||.|..|...|..|+++|++|+++++++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.96 E-value=0.0017 Score=57.65 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEE
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPIS 34 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~ 34 (474)
|||.|||+|.+|.+.|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 689999999999999999999998643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.046 Score=48.81 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=35.2
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (474)
|++|| |.+.+|.++|+.|++.|++|.+.+|+.++.++..++
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 57766 578899999999999999999999999887766553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.78 E-value=0.037 Score=46.61 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=60.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCC-HHHHHhhc--CCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRD-PESFVNSI--QKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s-~~e~~~~l--~~~dvIil~vp~ 83 (474)
..|.|+|+|.+|...+..+...|. .|.+.|+++++.+.+.+.+... -+....+ .++..+.. ...|+||.++..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~---~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH---VVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE---EEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce---eecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 469999999999998888877775 7788899999988877665321 0111122 22222221 236888888876
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (474)
.. .++.....++++-.++-.+
T Consensus 111 ~~----~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QA----TVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HH----HHHHGGGGEEEEEEEEECC
T ss_pred ch----HHHHHHHHHhCCCEEEEEe
Confidence 43 2444455666666555554
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.71 E-value=0.015 Score=45.80 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=31.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 5799999999999999999999999999987754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.65 E-value=0.0029 Score=51.19 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=47.0
Q ss_pred cEEEEcccHhHHHHHHHHH-HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 9 RIGLAGLAVMGQNLALNIA-EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+|.|+|+|.+|..++..+. +.||++. .+|-++++...... +.++...+.++++... ..++.++++|.. .
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~------Gi~V~~~~~l~~~~~~--~i~iai~~i~~~-~ 75 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR------GGVIEHVDLLPQRVPG--RIEIALLTVPRE-A 75 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET------TEEEEEGGGHHHHSTT--TCCEEEECSCHH-H
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC------CEEEecHHHHHHHHhh--cccEEEEeCCHH-H
Confidence 7999999999999998764 4577776 55888765432211 1112222334444332 357777777753 4
Q ss_pred HHHHHHHHHh
Q 011931 87 VDETIKTLSA 96 (474)
Q Consensus 87 v~~vl~~l~~ 96 (474)
.+++++.+.+
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.65 E-value=0.098 Score=46.45 Aligned_cols=176 Identities=12% Similarity=0.140 Sum_probs=100.2
Q ss_pred cCcEEEEcccHhHHHHHHHHH-HCCCcEEEEe-----------CChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIA-EKGFPISVYN-----------RTTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~d-----------r~~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l~~ 73 (474)
..+|.|=|+|++|..+|+.|. +.|..|+..+ .+.+.+..+.+.....-.+ +.+ .-+.+++... +
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 107 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--D 107 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHTS--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eecccccccc--c
Confidence 457999999999999999997 5698877543 2334444444332110000 111 1245566552 4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC--CCCCcccccCCCccccCC
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG--VSGGEEGARHGPSLMPGG 151 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~p--vsgg~~~a~~G~~i~~gg 151 (474)
||+++-|--... +. .+..+.+. -++|+..+|... +.+..+.|.++|+.|++-- -+||..
T Consensus 108 ~DI~~PcA~~~~-I~---~~~a~~l~-~~~I~e~AN~p~--t~~a~~~L~~rgI~~~PD~~aNaGGVi------------ 168 (234)
T d1b26a1 108 VDILVPAALEGA-IH---AGNAERIK-AKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVT------------ 168 (234)
T ss_dssp CSEEEECSCTTC-BC---HHHHTTCC-CSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHH------------
T ss_pred cceeecchhccc-cc---HHHHHHhh-hceEeecCCCCC--CHHHHHHHHHCCeEEechHHhcCCCee------------
Confidence 999887765542 21 33445554 368888888753 3345677889999888642 222210
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011931 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (474)
Q Consensus 152 ~~~~~~~v~~ll~~lg~~~~~~~~~~~~~g~~g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~ 226 (474)
-..+ +........ .+ -..-+.+.+...+...+.+.+..+++.+ +++.+...++
T Consensus 169 -~s~~----E~~qn~~~~--------~w--------~~e~V~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 221 (234)
T d1b26a1 169 -VSYF----EWVQDLQSF--------FW--------DLDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 221 (234)
T ss_dssp -HHHH----HHHHHHTTC--------CC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred -eeeh----hcccccchh--------cc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 0111 222222211 11 0123445555566677778888889998 8877765543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.61 E-value=0.15 Score=42.82 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=49.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhh--cCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNS--IQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~-s~~e~~~~--l~~~dvIil~vp~ 83 (474)
.+|.|+|+|.+|...++.+...|. .|++.|+++++.+...+.+... ..+....+ ..+..... -..+|++|.|+..
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~-~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~ 108 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD-CLNPRELDKPVQDVITELTAGGVDYSLDCAGT 108 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHHTSCBSEEEESSCC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc-ccCCccchhhhhhhHhhhhcCCCcEEEEeccc
Confidence 469999999999999999999997 6788999999987766655321 00001111 12222211 1246888888876
Q ss_pred Ch
Q 011931 84 GA 85 (474)
Q Consensus 84 ~~ 85 (474)
+.
T Consensus 109 ~~ 110 (174)
T d1e3ia2 109 AQ 110 (174)
T ss_dssp HH
T ss_pred ch
Confidence 53
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.59 E-value=0.069 Score=47.77 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=52.8
Q ss_pred cEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011931 9 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (474)
Q Consensus 9 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~ 83 (474)
|+++| | .+-+|.++|+.|++.|++|.+.||+++.. +...+.. . .+++.+ =+.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~------------------g----~~~~~~~~Dvs~ 63 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL------------------G----RRVLTVKCDVSQ 63 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT------------------T----CCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc------------------C----CcEEEEEeeCCC
Confidence 56666 4 67899999999999999999999986432 2221111 0 122222 2345
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
..+++.+++++.....+=+++|+.....
T Consensus 64 ~~~v~~~~~~~~~~~G~iDilVnnAG~~ 91 (247)
T d2ew8a1 64 PGDVEAFGKQVISTFGRCDILVNNAGIY 91 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5667777777777666667888766543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.03 Score=47.26 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhc---CCCcEEEEec
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSI---QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l---~~~dvIil~v 81 (474)
.+|.|+|+ |.+|....+.....|.+|++.++++++.+.+.+.+... +.- ..+..+.+..+ +..|+|+-++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHE----VFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCccc----ccccccccHHHHhhhhhccCCceEEeecc
Confidence 46999995 99999998888889999999999998887777655321 111 11233322211 2368888776
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.. . .++.....++++-.++..+..
T Consensus 106 g~-~----~~~~~~~~l~~~G~iv~~G~~ 129 (174)
T d1yb5a2 106 AN-V----NLSKDLSLLSHGGRVIVVGSR 129 (174)
T ss_dssp HH-H----HHHHHHHHEEEEEEEEECCCC
T ss_pred cH-H----HHHHHHhccCCCCEEEEEecC
Confidence 53 2 344445556666666666543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.56 E-value=0.013 Score=52.67 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=31.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (474)
++|.|||.|.-|..+|..|+++|. +|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999999999999999995 9999998764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.53 E-value=0.063 Score=48.13 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=52.6
Q ss_pred EEEEccc---HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 10 IGLAGLA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 10 IgiIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
+-|.|++ -+|.++|+.|++.|++|.+.+|+++..+...+... ....+..+-.-+.+..+
T Consensus 11 alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~------------------~~~~~~~~~~D~~~~~~ 72 (256)
T d1ulua_ 11 ALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAE------------------ALGGALLFRADVTQDEE 72 (256)
T ss_dssp EEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH------------------HTTCCEEEECCTTCHHH
T ss_pred EEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhh------------------ccCcccccccccCCHHH
Confidence 4555764 49999999999999999999998654443322111 00012233333444556
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCC
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (474)
++.+++.+.....+=+++|+.....
T Consensus 73 v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 73 LDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp HHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHHhcCCceEEEeccccc
Confidence 7777777766655556788776554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.018 Score=45.44 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=31.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 479999999999999999999999999999875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.018 Score=45.91 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=31.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.++.|||.|.+|.-+|..|++.|.+|+++++++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 579999999999999999999999999999865
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.45 E-value=0.014 Score=54.85 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.5
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC--CcEEEEeCChH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~ 41 (474)
.|+||+|||+|.-|...|..|++.| ++|++++++..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3568999999999999999998876 69999999854
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.36 E-value=0.014 Score=51.57 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~ 41 (474)
+||+|||.|.-|..-|..|+++ |++|++||+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999765 789999998864
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.30 E-value=0.065 Score=45.08 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=50.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCcccc---CCHHHHHhhc--CCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGF---RDPESFVNSI--QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~---~s~~e~~~~l--~~~dvIil~v 81 (474)
.+|.|+|+|.+|...+..++..|. .|.+.|+++++.+...+.+... -+... ....+..... ...|++|.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE---CVNPQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee---EEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 369999999999999999999885 8889999999988777665321 01111 1222222221 2468888888
Q ss_pred CCCh
Q 011931 82 KAGA 85 (474)
Q Consensus 82 p~~~ 85 (474)
....
T Consensus 107 G~~~ 110 (176)
T d2jhfa2 107 GRLD 110 (176)
T ss_dssp CCHH
T ss_pred Cchh
Confidence 7653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=94.30 E-value=0.083 Score=47.14 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=54.8
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~ 83 (474)
+|.+| |.+.+|.++|+.|++.|++|.+. .|+++..+++.+..... . .+++.+ =+.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~Dv~~ 62 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----------------G---GQAITFGGDVSK 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----------------C---CcEEEEeCCCCC
Confidence 36666 58889999999999999999875 56777776665533210 0 222222 2344
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+++.+++++.....+=+++|+....
T Consensus 63 ~~~v~~~~~~~~~~~g~iDiLVnnAg~ 89 (244)
T d1edoa_ 63 EADVEAMMKTAIDAWGTIDVVVNNAGI 89 (244)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCcccccccc
Confidence 456777777777766566788876544
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.30 E-value=0.025 Score=44.70 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
..+|.|||.|.+|.-+|..|++.|.+|++++|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 3579999999999999999999999999999854
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.30 E-value=0.022 Score=45.31 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5799999999999999999999999999998764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.24 E-value=0.039 Score=49.00 Aligned_cols=68 Identities=9% Similarity=0.149 Sum_probs=45.6
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
++-|.| .+-+|.++|+.|++.|++|.+.+|+++.+++...... ........+.+++.+.+-|++|.+.
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~-----~~Dv~~~~~~~~~~~g~iD~lVnnA 74 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----VCDLRKDLDLLFEKVKEVDILVLNA 74 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE-----ECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE-----EcchHHHHHHHHHHhCCCcEEEecc
Confidence 455556 6779999999999999999999999877654321110 0112234555666666677777654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.02 Score=52.27 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=31.9
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
+..||.|||.|.-|..-|..|+++|++|++++.+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34689999999999999999999999999999764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.20 E-value=0.024 Score=45.13 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=30.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
.++.|||.|.+|.-+|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 47999999999999999999999999999876
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.20 E-value=0.02 Score=45.50 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+|.|||.|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998753
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.13 E-value=0.031 Score=44.49 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=31.2
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
..+|.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 3579999999999999999999999999998764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.041 Score=49.23 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=68.7
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|+.++..|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+..++..
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~ 108 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNAL 108 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhh
Confidence 3589999999999999999999998 78899976422222221100 00000000111122222221 256666666654
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
..-... ...+..-++++|++... .....+.+.....++.++.+.+.+
T Consensus 109 ~~~~~~----~~~~~~~divid~~d~~-~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 109 LDDAEL----AALIAEHDLVLDCTDNV-AVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CCHHHH----HHHHHTSSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhhccc----cccccccceeeeccchh-hhhhhHHHHHHHhCCCcccccccc
Confidence 222222 22344678999987653 333344455556788888765544
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.014 Score=54.03 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=31.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|-+|.|||+|..|...|..|+++|++|++++++.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4579999999999999999999999999999875
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.04 E-value=0.02 Score=52.56 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=30.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (474)
.+|.|||.|.+|.+.|..|++.|. +|+++|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999996 799999874
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.00 E-value=0.13 Score=45.79 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=70.1
Q ss_pred cCcEEEEcccHhHHHHHHHHHH-CCCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAE-KGFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQK 73 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~-~G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~-~~~~~~s~~e~~~~l~~ 73 (474)
-++|.|-|.|++|..+|+.|.+ .|..|+ +.|.+ .+.+.+..........+ +.. .-+.+++... +
T Consensus 32 g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~--~ 108 (239)
T d1gtma1 32 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGAT-NITNEELLEL--E 108 (239)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSE-EECHHHHHHS--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCe-eecccccccc--c
Confidence 3679999999999999999975 588766 44543 23333333322110000 111 1245666543 4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 74 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
||+++-|-....-. .+..+.+ .-++|+..+|... + .+..+.|.++|+.|++.
T Consensus 109 ~DIl~PcA~~~~I~----~~~a~~i-~ak~I~e~AN~p~-t-~ea~~~L~~rgI~~iPD 160 (239)
T d1gtma1 109 VDVLAPAAIEEVIT----KKNADNI-KAKIVAEVANGPV-T-PEADEILFEKGILQIPD 160 (239)
T ss_dssp CSEEEECSCSCCBC----TTGGGGC-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEECH
T ss_pred ccEEeecccccccc----HHHHHhc-cccEEEecCCCCC-C-HHHHHHHHHCCCEEecc
Confidence 99998887654211 2233444 3468888888764 3 34567788999988863
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.035 Score=49.81 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=34.9
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 57777 79999999999999999999999999988766543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.036 Score=46.86 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=57.6
Q ss_pred CcEEEEccc-HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC--CC---Ccc--ccCCHHHHHhhcCCCcEEEE
Q 011931 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG--DL---PLF--GFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 8 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--~~---~~~--~~~s~~e~~~~l~~~dvIil 79 (474)
+++.|||-+ .+|.+||..|+++|..|+.++.+.... +. ...... .. .+. ..+.+.+.... +|++|.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FT-RGESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EE-SCCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cc-cccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 579999966 469999999999999999998653210 00 000000 00 000 01124555556 999999
Q ss_pred ecCCChh-HHHHHHHHHhcccCCCEEEecCCC
Q 011931 80 LVKAGAP-VDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 80 ~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
+++.+.. +. .+.+++|.++||.+..
T Consensus 104 avG~p~~~i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYKFP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ccCCCccccC------hhhcccCceEeecccc
Confidence 9987631 11 2457899999999865
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.92 E-value=0.087 Score=47.71 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=53.6
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~ 83 (474)
|+.+| |.+.+|.++|+.|+++|++|.+.+++ .+.++++.+..... . .++..+ =+.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN----------------G---SDAACVKANVGV 79 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh----------------C---CceeeEeCCCCC
Confidence 56666 58999999999999999999998877 44555544332111 0 223322 2334
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++++..++++......=+++|+....
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag~ 106 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSGV 106 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccc
Confidence 456677777776666566777776543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.87 E-value=0.069 Score=46.01 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=35.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 50 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 50 (474)
.+|.|+|+|.+|...+..+...|. .|.+.|+++++++...+.+
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G 70 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence 369999999999877777766676 7889999999988777655
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.029 Score=44.72 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+|.|||.|.+|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 479999999999999999999999999999864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.70 E-value=0.025 Score=51.11 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
+++||-|+| .|.+|+.++..|+++||+|++.+|++..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 457899998 5999999999999999999999997543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.70 E-value=0.089 Score=47.47 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=52.9
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~ 83 (474)
|+.|| |.+-+|.++|+.|++.|++|.+.+|+.+ ..+.+.+..... . .+++.+ =+.+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~----------------g---~~~~~~~~Dvt~ 68 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV----------------G---GEAIAVKGDVTV 68 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc----------------C---CcEEEEEccCCC
Confidence 56666 5788999999999999999999999854 444444332110 0 222222 2334
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...++.+++.+.....+=+++|+....
T Consensus 69 ~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 69 ESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCEeecccee
Confidence 456666666666655555777776543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=0.065 Score=49.96 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=29.2
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
|||-|+| .|-+|+.++..|++.||+|++.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 6899996 899999999999999999999986
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.57 E-value=0.064 Score=45.29 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc--ccCCHHHHHhhc---CCCcEEEEec
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF--GFRDPESFVNSI---QKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~--~~~s~~e~~~~l---~~~dvIil~v 81 (474)
.+|.|.| .|.+|...++.+...|.+|.+..+++++.+.+.+.+... +. ...+..+.+.++ +..|+|+-++
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~----vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY----VGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE----EEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccccc----cccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 4688888 599999999988888999999999988877666543211 11 111222222221 2357777776
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
.. +.+ +.....++++..+|..+.
T Consensus 103 g~-~~~----~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 103 AG-EAI----QRGVQILAPGGRFIELGK 125 (183)
T ss_dssp CT-HHH----HHHHHTEEEEEEEEECSC
T ss_pred cc-hHH----HHHHHHhcCCCEEEEEcc
Confidence 53 222 233344555555665543
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.56 E-value=0.036 Score=43.77 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+|.|||.|.+|.-+|..|++.|.+|+++.++.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 479999999999999999999999999998664
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.46 E-value=0.036 Score=44.73 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=31.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5799999999999999999999999999998653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.34 E-value=0.032 Score=48.33 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=30.3
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.|.|||.|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 48999999999999999999999999999885
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.34 E-value=0.041 Score=48.60 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=32.8
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
...+|.|||.|.-|...|..|++.|++|++++++++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 346899999999999999999999999999998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.33 E-value=0.23 Score=41.98 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=72.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCcc-ccCCHHHHHhhcCCCcEEEEecCCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLF-GFRDPESFVNSIQKPRVIIMLVKAGA 85 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-~~~~-~~~s~~e~~~~l~~~dvIil~vp~~~ 85 (474)
.+|-=||+|.=..++ .|++.+.+|+.+|++++.++.+.+.....+- .+++ ...+..+.....+..|.|++..+..
T Consensus 35 ~~VLDiGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~- 111 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG- 111 (186)
T ss_dssp CEEEEESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT-
T ss_pred CEEEEEECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc-
Confidence 356667777644443 3456677999999999988877665433210 1332 2345666666666789998876654
Q ss_pred hHHHHHHHHHhcccCCCEE-EecCCCCchhHHHHHHHHHHcCC
Q 011931 86 PVDETIKTLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGL 127 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~ 127 (474)
..+.+++.+...|++|..+ +... .........+.+...+.
T Consensus 112 ~~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 112 ELQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGF 152 (186)
T ss_dssp CHHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCC
Confidence 6788888888888887654 4332 22344445555665553
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.28 E-value=0.12 Score=46.40 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=51.0
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE--ecCC
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM--LVKA 83 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil--~vp~ 83 (474)
|+.+| |.+-+|.++|+.|++.|++|.+ ++++.+..+++.+.....+ .+++.+ -+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~~D~~~ 67 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------------AQGVAIQADISK 67 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------------CCceEecCCCCC
Confidence 45555 5788999999999999999987 5667666666555432110 223322 2333
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
...++..++.+......=+++|+....
T Consensus 68 ~~~v~~~~~~~~~~~g~idilinnag~ 94 (259)
T d1ja9a_ 68 PSEVVALFDKAVSHFGGLDFVMSNSGM 94 (259)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 445666666666555444566665543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.25 E-value=0.32 Score=40.34 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=37.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (474)
.+|.|+|+|.+|...+..++..|- .|++.|+++++.+...+.+.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 469999999999999988888776 68899999999988777654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=93.10 E-value=0.032 Score=51.62 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
.+|.|||+|.-|..+|..|.+.|++|++++++++-
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i 42 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence 46999999999999999999999999999998753
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=93.09 E-value=0.2 Score=44.72 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=30.2
Q ss_pred cEEEEcc-cH--hHHHHHHHHHHCCCcEEEEeCChHHHH
Q 011931 9 RIGLAGL-AV--MGQNLALNIAEKGFPISVYNRTTSKVD 44 (474)
Q Consensus 9 ~IgiIGl-G~--mG~~lA~~L~~~G~~V~v~dr~~~~~~ 44 (474)
++-|.|+ |. +|.++|+.|++.|++|.+.+|+.++..
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 4666685 65 999999999999999999999987653
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.083 Score=52.82 Aligned_cols=126 Identities=8% Similarity=0.082 Sum_probs=71.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~ 84 (474)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+...-- .....+-.-+....+.+..|. +++-+..+..
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lN-p~v~i~~~~~- 102 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEE- 102 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTC-TTSBCCEESS-
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhC-CCCcEEEEcC-
Confidence 3589999999999999999999997 79999976543333332110 000000011112222233332 4443333433
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~pvsg 136 (474)
.....++.-...+..-++||++.. .+.....+...+.++++.|+.+.+.|
T Consensus 103 -~~~~~~~~~~~~~~~~dvVv~~~~-~~~~~~~l~~~c~~~~ip~i~~~~~G 152 (529)
T d1yova1 103 -SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 152 (529)
T ss_dssp -CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred -CchhhhhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 234444333344555678887644 44455556677777788888775544
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.02 E-value=0.052 Score=42.41 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.++.|||.|..|.-+|..|++.|++|+++++.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence 579999999999999999999999999998864
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.99 E-value=0.037 Score=50.01 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
.|.|||.|.+|.+.|..|+++|++|+++|+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4899999999999999999999999999975
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.92 E-value=0.16 Score=40.32 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=76.3
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
.||-|-|. |.-|+--+..+.+.|-+|..-- +|.+-- .. ..++..+++.+|+++.. .+|.-++-||+..+
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~YGT~iVaGV-tPgKgG------~~--~~giPVf~tV~eA~~~~-~~daSvIfVPp~~a 85 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEYGTNLVGGT-TPGKGG------KT--HLGLPVFNTVKEAKEQT-GATASVIYVPPPFA 85 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEE-CTTCTT------CE--ETTEEEESSHHHHHHHH-CCCEEEECCCHHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHhcCCeEEee-ccCCCC------cc--ccCccchhhHHHHHHhc-CCcEEEEecCHHHH
Confidence 57999996 9999999999999998876432 232211 00 11477899999999864 48999999999877
Q ss_pred HHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEe
Q 011931 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLG 131 (474)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~v~ 131 (474)
.+++++.+...++ .+|+-+=..+..+..++...+.+. +.++++
T Consensus 86 ~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~liG 129 (130)
T d1euca1 86 AAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 129 (130)
T ss_dssp HHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEeC
Confidence 7777777766552 344444455555666665555333 355553
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.78 E-value=0.049 Score=48.19 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=31.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
-.|.|||.|..|...|..|+++|++|+++++++.-
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 35999999999999999999999999999988653
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.75 E-value=0.025 Score=49.67 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=30.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-------cEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-------PISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-------~V~v~dr~~~ 41 (474)
.||+|||.|.-|.+-|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 389999999999999999999984 7999998864
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.19 Score=44.62 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=28.7
Q ss_pred EEEEccc---HhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 10 IGLAGLA---VMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 10 IgiIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
|-|.|.+ -+|.++|+.|++.|++|.+.+|+++..+.+
T Consensus 8 ~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 8 ILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5555654 378999999999999999999996544433
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.50 E-value=0.056 Score=50.60 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=33.6
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHH
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV 43 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (474)
++++|.|+| .|.+|+.++..|+++||+|++..|++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 356899998 79999999999999999999999987654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.46 E-value=0.04 Score=43.78 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=31.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 4799999999999999999999999999988653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.40 E-value=0.057 Score=50.80 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=31.5
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
+.|||-|.| .|-+|+.++..|.++||+|+++|+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 357999997 99999999999999999999998754
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.052 Score=49.92 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.|.|||+|.-|.+-|..|+++|++|++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 38999999999999999999999999999764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.33 E-value=0.54 Score=42.98 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=52.3
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHH---------HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSK---------VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~---------~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
|+.+| |.+-+|.++|+.|++.|++|.+.|++.+. ++++.+. .-.. ...+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~~~~ 67 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE-----------------IRRR---GGKA 67 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHH-----------------HHHT---TCEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHH-----------------Hhhc---cccc
Confidence 56677 47789999999999999999999887542 2222221 1111 2333
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..-+.+...++.+++.+.....+=+++|+....
T Consensus 68 ~~d~~~~~~~~~~v~~~~~~~G~iDiLVnNAGi 100 (302)
T d1gz6a_ 68 VANYDSVEAGEKLVKTALDTFGRIDVVVNNAGI 100 (302)
T ss_dssp EEECCCGGGHHHHHHHHHHHTSCCCEEEECCCC
T ss_pred ccccchHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 444444456677777766666555777776543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.21 E-value=0.081 Score=46.87 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=61.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEe------
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIML------ 80 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~------ 80 (474)
.+|-=||+|. ..++..|++.|.+|+++|.+++-++.+.+..... +.++. ...+..++-- -+..|+|+++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~-~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhcccccccc-Cccceeeccchhhhcc-cccccccceeeeeeec
Confidence 4688898884 2466678889999999999998877665543221 11222 2334444321 1235988864
Q ss_pred cCCChhHHHHHHHHHhcccCCC-EEEecC
Q 011931 81 VKAGAPVDETIKTLSAYMEKGD-CIIDGG 108 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~-iiId~s 108 (474)
+++......++..+...|++|. +|+|..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 3444567778899999998865 455553
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=92.15 E-value=0.15 Score=47.49 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=35.8
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
.+|.|.| .|.+|+.++..|+++||+|.+..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH
Confidence 4799997 8999999999999999999999999887766543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.09 Score=41.39 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred CcCcEEEEccc-----------HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCC
Q 011931 6 QLTRIGLAGLA-----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKP 74 (474)
Q Consensus 6 ~~~~IgiIGlG-----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~ 74 (474)
+..||-|||.| ..+...++.|.+.|+++.+.|.||+.+ .+++. + +
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------------std~d-~------a 58 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------------STDYD-T------S 58 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------------TTSTT-S------S
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------------hcChh-h------c
Confidence 35689999998 567888999999999999999998742 22222 2 4
Q ss_pred cE-EEEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 75 RV-IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 75 dv-Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
|. .|..+.. +.+.++++ .=+|..+++-.+. .+...++..|.+.|+..++
T Consensus 59 D~lYfeplt~-e~v~~Ii~----~E~p~~ii~~~GG---Qtalnla~~L~~~gv~iLG 108 (121)
T d1a9xa4 59 DRLYFEPVTL-EDVLEIVR----IEKPKGVIVQYGG---QTPLKLARALEAAGVPVIG 108 (121)
T ss_dssp SEEECCCCSH-HHHHHHHH----HHCCSEEECSSST---HHHHTTHHHHHHTTCCBCS
T ss_pred CceEEccCCH-HHHHHHHH----HhCCCEEEeehhh---hhHHHHHHHHHHcCCcEEC
Confidence 44 4445543 23444432 2346667766655 4666777778887765443
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.09 E-value=0.25 Score=44.28 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=63.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEE-EeC----------ChHHHHHHHHhhhhcCCC---------CccccCCHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISV-YNR----------TTSKVDETVERAKKEGDL---------PLFGFRDPESF 67 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~dr----------~~~~~~~l~~~~~~~~~~---------~~~~~~s~~e~ 67 (474)
.+|.|=|.|++|..+|+.|.+.|..|+. .|. +.+.+.++.......... ..... +.+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 115 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PGEKP 115 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ETCCG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-chhhc
Confidence 5799999999999999999999998863 342 223332222111000000 00011 12222
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHHhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011931 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 68 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v~ 131 (474)
... +||+++-|-....-..+..+.+.. ++ ++|+...|.+. +.+.....++++|+.+++
T Consensus 116 ~~~--~~DiliPcA~~~~I~~~~a~~l~a---~~ck~I~EgAN~p~-t~ea~~~ll~~~gI~vvP 174 (255)
T d1bgva1 116 WGQ--KVDIIMPCATQNDVDLEQAKKIVA---NNVKYYIEVANMPT-TNEALRFLMQQPNMVVAP 174 (255)
T ss_dssp GGS--CCSEEECCSCTTCBCHHHHHHHHH---TTCCEEECCSSSCB-CHHHHHHHHHCTTCEEEC
T ss_pred ccc--cccEEeeccccccccHHHHHhhhh---cCceEEecCCCCCc-chHHHHHHHHhcCCEEeh
Confidence 221 489987665544222233333322 22 57888888753 333434456668888775
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.08 E-value=0.093 Score=41.07 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=31.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5799999999999999999999999999998753
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.00 E-value=0.037 Score=49.74 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=30.5
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
|||-|.|. |-+|+.++..|.++||+|++.||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 78999995 9999999999999999999999864
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.03 Score=49.56 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=47.8
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEec
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~--~~s~~e~~~~l~~~dvIil~v 81 (474)
+++|-|.| +|.+|+.++..|.++|. +|++.+|++.+......... .... ..+++++.+.++.+|+++.++
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i-----~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV-----NQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC-----EEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccccee-----eeeeecccccccccccccccccccccc
Confidence 35799997 99999999999999994 89999997654221111000 0111 223445555566689998887
Q ss_pred CCC
Q 011931 82 KAG 84 (474)
Q Consensus 82 p~~ 84 (474)
...
T Consensus 89 ~~~ 91 (232)
T d2bkaa1 89 GTT 91 (232)
T ss_dssp CCC
T ss_pred ccc
Confidence 553
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.88 E-value=0.15 Score=42.41 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 51 (474)
.+|.|+|+|.+|...++.+...|. .|.+.++++++.+...+.+.
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 369999999999998888888886 57788999998877666553
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=91.85 E-value=0.36 Score=43.27 Aligned_cols=42 Identities=12% Similarity=0.349 Sum_probs=32.5
Q ss_pred CcEEEE--cccHhHHHHHHHHHHCCCcEEEEe-CChHHHHHHHHh
Q 011931 8 TRIGLA--GLAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVER 49 (474)
Q Consensus 8 ~~IgiI--GlG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~ 49 (474)
+-|+|| |.+-+|.++|+.|++.|++|.+.+ ++.+..+++.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~ 46 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT 46 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence 458888 567899999999999999998765 556666655543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.84 E-value=0.065 Score=47.74 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=29.3
Q ss_pred CcEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
|||.|| | .+-+|.++|+.|++.|++|.+.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 577666 4 678999999999999999999998754
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=91.62 E-value=1.4 Score=35.27 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=64.2
Q ss_pred CcEEEE-c--c---cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLA-G--L---AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiI-G--l---G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.||.|| + . -.|...++..|.+.|++|.++|.+....+.. ..++ .. +|.||+..
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~-----------------~~~l-~~---~d~vi~Gs 61 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQI-----------------MSEI-SD---AGAVIVGS 61 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHH-----------------HHHH-HT---CSEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhh-----------------ccch-hh---CCEEEEec
Confidence 466666 2 3 3467778888888999999998764322111 1122 22 89999999
Q ss_pred CCC-----hhHHHHHHHHHhcccCCCEEEecCC--CCchhHHHHHHHHHHcCCeEEecC
Q 011931 82 KAG-----APVDETIKTLSAYMEKGDCIIDGGN--EWYENTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 82 p~~-----~~v~~vl~~l~~~l~~g~iiId~st--~~~~~~~~~~~~l~~~g~~~v~~p 133 (474)
|.. ..+...++.+...-.++..+.-.++ ........+.+.+...|+..+..|
T Consensus 62 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~ 120 (152)
T d1e5da1 62 PTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATP 120 (152)
T ss_dssp CCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCC
T ss_pred cccCCccCchhHHHHHHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCc
Confidence 873 4566777665543334554433222 233456677788888888766543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.60 E-value=0.19 Score=44.26 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=61.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEec-----
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLV----- 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~v----- 81 (474)
.+|-=||+|. | .++..|+++|++|+++|.+++-++.+.+..... +.++. ...+.+++--. +..|+|+++-
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~-~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKER-NLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccc-cccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 4688899997 4 446678899999999999998877666553321 11121 22334333211 2358887753
Q ss_pred CCChhHHHHHHHHHhcccCCC-EEEecCC
Q 011931 82 KAGAPVDETIKTLSAYMEKGD-CIIDGGN 109 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~-iiId~st 109 (474)
.+......++..+...|+||. +|++..+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 222346678888888888765 5555443
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.44 E-value=0.076 Score=42.27 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=30.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.++.|||.|.+|.-+|..|.+.|.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 479999999999999999999999999998765
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.22 Score=41.60 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=21.6
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCC
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKG 30 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G 30 (474)
++.+|+++|+|.+|+.+++.|.++.
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 3568999999999999999998754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.079 Score=49.21 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=32.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCC-cEEEEeCChHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDET 46 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l 46 (474)
|||-|.| .|.+|+.++..|++.|+ +|.+.|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh
Confidence 6899997 89999999999999995 899999876544433
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.18 Score=41.13 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=29.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
++|-|||.|.+|..-+..|++.|-+|+++.+.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.25 E-value=0.23 Score=41.49 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=36.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (474)
.+|.|+| .|.+|....+.....|.+|++.++++++.+.+.+.+.
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 3688885 5558888888777889999999999999988777654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.01 E-value=0.15 Score=45.61 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=36.4
Q ss_pred CcEEEE-c-ccHhHHHHHHHHHH---CCCcEEEEeCChHHHHHHHHhh
Q 011931 8 TRIGLA-G-LAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERA 50 (474)
Q Consensus 8 ~~IgiI-G-lG~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~~ 50 (474)
-||+|| | .+-+|.++|+.|++ +|++|.+.+|++++++++.++.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l 53 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL 53 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence 478888 5 56899999999986 7999999999999988776543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.98 E-value=0.069 Score=49.43 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=29.7
Q ss_pred cEEEEcccHhHHHHHHHHH-----HCCCcEEEEeCChH
Q 011931 9 RIGLAGLAVMGQNLALNIA-----EKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~-----~~G~~V~v~dr~~~ 41 (474)
.|.|||.|..|..+|..|+ ++|++|+++++++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 5999999999999999996 57999999998754
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.96 E-value=0.73 Score=43.19 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=29.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
|||-|.| .|-+|+.++..|++.||+|+++|.-
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl 34 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL 34 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEecC
Confidence 6898987 8999999999999999999999843
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.89 E-value=0.092 Score=46.72 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (474)
.+|-|||.|..|...|..|+++|++|+++++++.....+..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~ 45 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEe
Confidence 35999999999999999999999999999998765444443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.67 E-value=0.093 Score=44.77 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=29.1
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~ 40 (474)
|||.|||.|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7999999999999999999886 45799998764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.54 E-value=0.21 Score=44.22 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.0
Q ss_pred CcEEEE-c-ccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 8 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 8 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
-|+.+| | .+-+|.++|+.|++.|++|.+.+|+.+.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 355555 4 6679999999999999999999998654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.51 E-value=0.3 Score=43.29 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=51.7
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~ 86 (474)
|-|.| .+-+|..+|+.|++.|+ .|.+..|+.++++++.+... .. ..++.+=+.+...
T Consensus 6 ilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~-----------------~~---~~~~~~Dvs~~~~ 65 (250)
T d1yo6a1 6 VVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD-----------------SR---VHVLPLTVTCDKS 65 (250)
T ss_dssp EEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCC-----------------TT---EEEEECCTTCHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhC-----------------Cc---eEEEEEecCCHHH
Confidence 44445 78899999999999996 57788999988776543210 01 2333333555556
Q ss_pred HHHHHHHHHhcccC--CCEEEecCCC
Q 011931 87 VDETIKTLSAYMEK--GDCIIDGGNE 110 (474)
Q Consensus 87 v~~vl~~l~~~l~~--g~iiId~st~ 110 (474)
++++++.+...+.. =+++|+....
T Consensus 66 v~~~~~~i~~~~~~~~idilinnAG~ 91 (250)
T d1yo6a1 66 LDTFVSKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcCcc
Confidence 77777766654332 3677776543
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=90.45 E-value=0.14 Score=45.93 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=65.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v 87 (474)
.||++||. + ++...+.+.|.++.++||+|.. + ..+....++++.. ||+||++-.+ -+
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------g-------d~p~~~~~~lLp~---aD~viiTGsT--lv 179 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------G-------DYPLPASEFILPE---CDYVYITCAS--VV 179 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------T-------CEEGGGHHHHGGG---CSEEEEETHH--HH
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------C-------CCCchHHHHhhhc---CCEEEEEech--hh
Confidence 58999975 4 6777788899999999999741 1 2233445667666 9999988643 56
Q ss_pred HHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011931 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
...++.|+.+.++...|+-.+-+.|-... +-++|+.++..
T Consensus 180 N~Tl~~LL~~~~~a~~vvl~GPS~p~~P~-----lf~~Gv~~lag 219 (251)
T d2h1qa1 180 DKTLPRLLELSRNARRITLVGPGTPLAPV-----LFEHGLQELSG 219 (251)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCGG-----GGGTTCSEEEE
T ss_pred cCCHHHHHHhCCcCCEEEEECCCcccCHH-----HHhcCCceEeE
Confidence 66778888887777666655554443221 22467777654
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.34 E-value=1.1 Score=39.33 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=28.9
Q ss_pred EEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHHH
Q 011931 10 IGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKV 43 (474)
Q Consensus 10 IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (474)
+++| |.+-+|.++|+.|+++|++|.+.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5666 567799999999999999999999986653
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=90.03 E-value=0.73 Score=40.84 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=50.8
Q ss_pred EEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCC-h
Q 011931 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAG-A 85 (474)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v--p~~-~ 85 (474)
|-|.| .+-+|..+|+.|++.|.+|.+..|+.++.+.+.+.... ... ..+.+.++ ..+ .
T Consensus 8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~---------------~~~---~~~~~~~~d~~~~~~ 69 (254)
T d1sbya1 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAI---------------NPK---VNITFHTYDVTVPVA 69 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHH---------------CTT---SEEEEEECCTTSCHH
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhh---------------CCC---CCEEEEEeecCCCHH
Confidence 44555 66799999999999999998887766554444321110 011 23333332 212 3
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.++++++.+.....+=+++|+....
T Consensus 70 ~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 70 ESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 5667777777766555788876654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.90 E-value=0.1 Score=46.63 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred EEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHH
Q 011931 12 LAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDET 90 (474)
Q Consensus 12 iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~v 90 (474)
|-| .+-+|.++|+.|++.|++|.+.||+.++.+++.+.... .-. +|+ .+..+++.+
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------~~~---~dv-----~~~~~~~~~ 61 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET---------------YPQ---LKP-----MSEQEPAEL 61 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH---------------CTT---SEE-----CCCCSHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc---------------EEE---ecc-----CCHHHHHHH
Confidence 335 55599999999999999999999998887776543211 011 443 123456667
Q ss_pred HHHHHhcccCCCEEEecC
Q 011931 91 IKTLSAYMEKGDCIIDGG 108 (474)
Q Consensus 91 l~~l~~~l~~g~iiId~s 108 (474)
++++.....+=+++|+..
T Consensus 62 ~~~~~~~~G~iDiLVnNA 79 (252)
T d1zmta1 62 IEAVTSAYGQVDVLVSND 79 (252)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 766666655556777643
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=89.81 E-value=2.2 Score=33.88 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=78.3
Q ss_pred CcEEEE---ccc---HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLA---GLA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiI---GlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
+||.|| ..| .|...++..+.+.|++|.++|.+....+++. .++ .. +|.||+..
T Consensus 3 ~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~-----------------~~~-~~---~d~ii~Gs 61 (149)
T d1ycga1 3 AKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVI-----------------KEI-LD---ARAVLVGS 61 (149)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHH-----------------HHH-HH---CSEEEEEC
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHh-----------------hhh-hh---CCeEEEEe
Confidence 355555 233 4777788888899999999986543222211 112 23 89999999
Q ss_pred CCC-----hhHHHHHHHHHhcccCCCEEEecCC--CCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHH
Q 011931 82 KAG-----APVDETIKTLSAYMEKGDCIIDGGN--EWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFE 154 (474)
Q Consensus 82 p~~-----~~v~~vl~~l~~~l~~g~iiId~st--~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~ 154 (474)
|.. ..++..++.+...-.++..+.-.++ ........+.+.+...|...+..|..- +-..-+++
T Consensus 62 pt~~g~~~~~~~~~l~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~----------~~~~P~~~ 131 (149)
T d1ycga1 62 PTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPT----------VQWVPRGE 131 (149)
T ss_dssp CCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCE----------EESSCCHH
T ss_pred ecccCCCCHHHHHHHHHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEE----------EcccCCHH
Confidence 853 3577777777654334544333222 123456667788888898877644210 00011456
Q ss_pred HHHHHHHHHHHHhcc
Q 011931 155 AYKYIEDILLKVAAQ 169 (474)
Q Consensus 155 ~~~~v~~ll~~lg~~ 169 (474)
.++.++++-+.++.+
T Consensus 132 dl~~~~e~g~~ia~k 146 (149)
T d1ycga1 132 DLQRCYELGRKIAAR 146 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777777654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.79 E-value=0.33 Score=41.55 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=59.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC---
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA--- 83 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~-~~~s~~e~~~~l~~~dvIil~vp~--- 83 (474)
.+|-=||+|. ..++..|++.|.+|++.|.+++.++.+.+.....+ ..+. ...+..++...-..-|+|++.---
T Consensus 39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhhC
Confidence 4688899987 33566788899999999999988877655432211 0111 222333321111225877764321
Q ss_pred -ChhHHHHHHHHHhcccCCC-EEEecCC
Q 011931 84 -GAPVDETIKTLSAYMEKGD-CIIDGGN 109 (474)
Q Consensus 84 -~~~v~~vl~~l~~~l~~g~-iiId~st 109 (474)
+.....++.++...|+||. ++++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 1245667888888888875 4555443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.72 E-value=1.1 Score=39.04 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=71.6
Q ss_pred CcEEEEcccH--hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~----~~s~~e~~~~l~~~dvIil~v 81 (474)
++|.=+|+|. .-..+|...- .+-.|+++|.++..++.+.+.....+ ++.. ...++.........|+|+..+
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~d~ 151 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEEEc
Confidence 4677777654 4444454332 23489999999999888876543211 1111 112222211223378899888
Q ss_pred CCChhHHHHHHHHHhcccCCCEEEec-------CCCCchhHHHHHHHHHHcCCeEEec
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCIIDG-------GNEWYENTERREKAMAELGLLYLGM 132 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~-------st~~~~~~~~~~~~l~~~g~~~v~~ 132 (474)
+...+.+.++..+...|++|-.++-+ ++..+....+..+.+.+.|+..++.
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 152 AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER 209 (227)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 87777788888888888887755432 2333344433344455667776653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=89.42 E-value=0.084 Score=49.27 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.8
Q ss_pred CcCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 6 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
+||||-|.| .|-+|+.|+..|.++|++|.++++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 588999998 999999999999999998665543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.32 E-value=0.14 Score=42.13 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=29.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC--cEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~ 40 (474)
+||-|||.|..|..+|..|.+.+. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 479999999999999999999885 789998876
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.91 E-value=0.3 Score=41.12 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=60.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhc--CCCcEEEEecCCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSI--QKPRVIIMLVKAG 84 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l--~~~dvIil~vp~~ 84 (474)
.+|-|.| .|.+|....+-....|.+|+...+++++.+.+.+.+... -+.......+.+..+ +..|+||-++...
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~ 109 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR 109 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---EEECC---------CCSCCEEEEEECSTTT
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---eeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence 3588888 699999888888889999999999999988887765431 111122223333322 2468888888754
Q ss_pred hhHHHHHHHHHhcccCCCEEEecCCC
Q 011931 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
.. ...+..+.++-.++.++..
T Consensus 110 -~~----~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 110 -TL----ATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp -TH----HHHHHTEEEEEEEEECSCC
T ss_pred -hH----HHHHHHhCCCceEEEeecc
Confidence 33 3444556666666666654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.90 E-value=0.14 Score=47.55 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.0
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
+||-|.| .|-+|+.++..|+++|++|.+++|+..+...+
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~ 48 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL 48 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH
Confidence 6899998 89999999999999999999999987654433
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.53 E-value=3.1 Score=32.36 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC-------hhHHHH
Q 011931 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG-------APVDET 90 (474)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~-------~~v~~v 90 (474)
+...+|..|.+.|++|.+++.+. .++.++.+ +|.+|+.+|+- ..++..
T Consensus 15 vA~~ia~~l~~~g~~v~~~~~~~---------------------~~~~~l~~----~~~~i~g~pt~~~g~~p~~~~~~~ 69 (138)
T d5nula_ 15 MAELIAKGIIESGKDVNTINVSD---------------------VNIDELLN----EDILILGCSAMTDEVLEESEFEPF 69 (138)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGGG---------------------CCHHHHTT----CSEEEEEECCBTTTBCCTTTHHHH
T ss_pred HHHHHHHHHHhcCCcceeccccc---------------------cccccccc----CCeEEEEEeccCCCCCChHHHHHH
Confidence 55667777777788887777542 13344433 89999988752 235666
Q ss_pred HHHHHhcccCCCEEE---ecCCCCchhHHHHHHHHHHcCCeEEecCCCCCcccccCCCccccCCCHHHHHHHHHHHHHHh
Q 011931 91 IKTLSAYMEKGDCII---DGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (474)
Q Consensus 91 l~~l~~~l~~g~iiI---d~st~~~~~~~~~~~~l~~~g~~~v~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~lg 167 (474)
++.+.+.+ ++..+. ..+.........+.+.+...|...+..++ .+-+.+.+..+.++++-+.++
T Consensus 70 ~~~~~~~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~------------~~~~~p~e~~~~~~~~g~~lA 136 (138)
T d5nula_ 70 IEEISTKI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPL------------IVQNEPDEAEQDCIEFGKKIA 136 (138)
T ss_dssp HHHHGGGC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCE------------EEESSCGGGHHHHHHHHHHHH
T ss_pred HHHhCccC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcE------------EECCCCcHHHHHHHHHHHHHh
Confidence 66665544 343332 22333334456677788888877665432 111224455666666666654
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=88.46 E-value=0.18 Score=45.48 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=30.0
Q ss_pred cEEEEcccHhHHHHHHHHHH-CCCcEEEEeCChH
Q 011931 9 RIGLAGLAVMGQNLALNIAE-KGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~-~G~~V~v~dr~~~ 41 (474)
.|.|||.|.-|...|..|++ .|++|+++|+.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 49999999999999999987 5999999998864
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.25 E-value=3.2 Score=33.78 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=46.9
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCC-----hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~v 81 (474)
.+|++||= .++..+++..+...|.+|+++.+. ++-.+.+.+..... ...+..+.++.+++.. +|+|..-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ea~~~---adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAES-GGSFELLHDPVKAVKD---ADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEEESCHHHHTTT---CSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcc-cceEEEecCHHHHhhh---ccEEeecc
Confidence 47999994 557788888888899999988643 33333333222111 1135678899999888 99888643
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.22 E-value=0.22 Score=46.15 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=28.3
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
.||-|.| .|-+|+.|+..|+++|++|++.|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 4798886 999999999999999999999975
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=88.09 E-value=0.56 Score=39.62 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=57.4
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEec-----C
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLV-----K 82 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s~~e~~~~l~~~dvIil~v-----p 82 (474)
+|-=||+| .|. .+..|++.|++|+++|.+++.++.+.+.....+..++.. ..+..+..-. ...|+|+... |
T Consensus 33 rvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 33 RTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD-GEYDFILSTVVMMFLE 109 (198)
T ss_dssp EEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC-CCEEEEEEESCGGGSC
T ss_pred cEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc-ccccEEEEeeeeecCC
Confidence 68889998 444 566788999999999999988876654432221001111 1222221110 1258887643 3
Q ss_pred CChhHHHHHHHHHhcccCCCEEEe
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIID 106 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId 106 (474)
+ .....++..+...|++|.+++-
T Consensus 110 ~-~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 110 A-QTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp T-THHHHHHHHHHHTEEEEEEEEE
T ss_pred H-HHHHHHHHHHHHHcCCCcEEEE
Confidence 3 3567788888888888765543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.08 E-value=0.47 Score=39.66 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=60.5
Q ss_pred CcEEEEcc-cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCC-HHHHHhh--cCCCcEEEEecC
Q 011931 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRD-PESFVNS--IQKPRVIIMLVK 82 (474)
Q Consensus 8 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~-~~s-~~e~~~~--l~~~dvIil~vp 82 (474)
.+|-|.|+ |.+|...++.....|.+|++..+++++.+.+.+.+... -+.. ..+ .+.+.+. -...|+||-++.
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~---vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA---AFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE---EEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh---hcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 35778787 66888888777788999999999999988877765421 0111 112 2222221 134788888885
Q ss_pred CChhHHHHHHHHHhcccCCCEEEecCC
Q 011931 83 AGAPVDETIKTLSAYMEKGDCIIDGGN 109 (474)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st 109 (474)
. + .+++..+.+.++-.++..+.
T Consensus 108 ~-~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 G-E----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H-H----HHHHHGGGEEEEEEEEECCC
T ss_pred c-h----hhhhhhhhccCCCeEEeecc
Confidence 2 2 34556667777777776654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=87.77 E-value=0.28 Score=43.76 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=67.1
Q ss_pred CcEEEEcccHh--HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC-CCccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAVM--GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~m--G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-~~~~~-~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|.=+|+|.= ...||+.+.. +-.|+.+|++++.++.+.+.....+. .++.. ..+..+.... ...|.|++-+|+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~-~~fD~V~ld~p~ 164 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD-QMYDAVIADIPD 164 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS-CCEEEEEECCSC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc-ceeeeeeecCCc
Confidence 57777876654 4445554433 34899999999988877664332110 02221 1233332211 236999998887
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+. .+++.+...|++|-.++..+.. .....+..+.+++.|+.
T Consensus 165 p~---~~l~~~~~~LKpGG~lv~~~P~-i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 165 PW---NHVQKIASMMKPGSVATFYLPN-FDQSEKTVLSLSASGMH 205 (250)
T ss_dssp GG---GSHHHHHHTEEEEEEEEEEESS-HHHHHHHHHHSGGGTEE
T ss_pred hH---HHHHHHHHhcCCCceEEEEeCC-cChHHHHHHHHHHCCCc
Confidence 64 3567777888888877653322 23445556666666643
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=87.77 E-value=0.46 Score=43.17 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=27.2
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
||-|.| .|-+|+.++..|+++||+|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 687775 999999999999999999999984
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.37 E-value=0.26 Score=45.10 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=29.1
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
+||-|.| .|-+|+.++..|+++||+|+++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 5799997 8999999999999999999999863
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.31 E-value=1.1 Score=37.71 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=50.5
Q ss_pred cCcEEEEc-c-cHhHHHHHHHHHHCCCcEEEEeCC-----hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLAG-L-AVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiIG-l-G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
..||++|| + -++..+++..+...|.+|.++.+. ++-++.+.+..... +..+..+.+++++++. +|+|..
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~eai~~---aDvVyt 80 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTLTEDPKEAVKG---VDFVHT 80 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEEESCHHHHTTT---CSEEEE
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEEEeChhhcccc---ccEEEe
Confidence 45899999 4 589999999999999999999763 33333332211111 1146778899999988 998876
Q ss_pred ec
Q 011931 80 LV 81 (474)
Q Consensus 80 ~v 81 (474)
-+
T Consensus 81 ~~ 82 (185)
T d1dxha2 81 DV 82 (185)
T ss_dssp CC
T ss_pred eh
Confidence 55
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.22 Score=48.16 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=30.4
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 40 (474)
.||.|||+|.+|..++.+|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 899999764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=86.99 E-value=0.33 Score=42.17 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=56.9
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC---C
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA---G 84 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~---~ 84 (474)
.+|-=||+|. +.++..|++.|++|+++|.+++.++.+.+.+.. .....+.+++--.-..-|+|+.+-.. -
T Consensus 44 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-----~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 44 CRVLDLGGGT--GKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CEEEEETCTT--CHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CEEEEECCCC--chhcccccccceEEEEeeccccccccccccccc-----ccccccccccccccccccceeeecchhhhh
Confidence 4688889883 455567788999999999999988877765432 12223333321100225887764221 1
Q ss_pred hhHHHHHHHHHhcccCCCEEE
Q 011931 85 APVDETIKTLSAYMEKGDCII 105 (474)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiI 105 (474)
...+.++.++...|++|.+++
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEE
T ss_pred hhHHHHHHHHHhhcCcCcEEE
Confidence 134567788888888876554
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.92 E-value=0.26 Score=42.24 Aligned_cols=31 Identities=13% Similarity=-0.084 Sum_probs=29.3
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
.|.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 4889999999999999999999999999986
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=86.88 E-value=0.34 Score=43.62 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=65.8
Q ss_pred CcEEEEcccH--hHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCC-Cccc-cCCHHHHHhhcCCCcEEEEecCC
Q 011931 8 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDL-PLFG-FRDPESFVNSIQKPRVIIMLVKA 83 (474)
Q Consensus 8 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~-~~~~-~~s~~e~~~~l~~~dvIil~vp~ 83 (474)
++|-=+|+|. +...||+.+. .+-+|+.+|.+++.++.+.+.....+.. ++.. ..+..+... ...+|.|++-+|+
T Consensus 105 ~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~D~V~~d~p~ 182 (266)
T d1o54a_ 105 DRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-EKDVDALFLDVPD 182 (266)
T ss_dssp CEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-CCSEEEEEECCSC
T ss_pred CEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc-ccceeeeEecCCC
Confidence 4677777665 3344443332 2358999999999887776544322100 1111 112222111 1237999999988
Q ss_pred ChhHHHHHHHHHhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011931 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (474)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (474)
+. .+++.+...|+||..++-.+.. .....+..+.+++.|+.
T Consensus 183 p~---~~l~~~~~~LKpGG~lv~~~P~-~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 183 PW---NYIDKCWEALKGGGRFATVCPT-TNQVQETLKKLQELPFI 223 (266)
T ss_dssp GG---GTHHHHHHHEEEEEEEEEEESS-HHHHHHHHHHHHHSSEE
T ss_pred HH---HHHHHHHhhcCCCCEEEEEeCc-ccHHHHHHHHHHHCCce
Confidence 64 3567777778887766543332 24555666777777753
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.80 E-value=0.21 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=29.5
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
|+++| |.+-+|.++|+.|++.|++|.+.||+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 56666 57899999999999999999999998653
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.68 E-value=0.23 Score=40.63 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=27.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.||.|||.|..|..+|..|.+ +++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 379999999999999999864 78999998753
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.58 E-value=1.1 Score=39.28 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=52.8
Q ss_pred cCcEEEEc-ccHhHHHHHHHHH---HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--
Q 011931 7 LTRIGLAG-LAVMGQNLALNIA---EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML-- 80 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~---~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~-- 80 (474)
|++|-|.| .+-+|.++|+.|+ +.|+.|.+.+|++++++++.+... .. .++.++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~~~D 61 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-----------------NH---SNIHILEID 61 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHH-----------------HC---TTEEEEECC
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh-----------------cC---CcEEEEEEE
Confidence 44587777 5789999999986 579999999999987766543211 01 2333333
Q ss_pred cCCChhHHHHHHHHHhc--ccCCCEEEecCCC
Q 011931 81 VKAGAPVDETIKTLSAY--MEKGDCIIDGGNE 110 (474)
Q Consensus 81 vp~~~~v~~vl~~l~~~--l~~g~iiId~st~ 110 (474)
+.+.+.++.+++.+... ..+=+++|+....
T Consensus 62 vs~~~~v~~~~~~i~~~~~~~~iDiLvnNAg~ 93 (248)
T d1snya_ 62 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGI 93 (248)
T ss_dssp TTCGGGHHHHHHHHHHHHGGGCCSEEEECCCC
T ss_pred eccHHHHHHHHhhhHHHhhcCCcceEEeeccc
Confidence 34556677777766432 2233677776543
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.48 E-value=0.28 Score=42.26 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=29.8
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999999764
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.34 E-value=0.34 Score=43.92 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=30.7
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
-.|.|||.|.-|...|..|+++|.+|+++++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999875
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.09 E-value=0.39 Score=41.56 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=29.9
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.|.|||.|.-|...|..+++.|++|+++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999765
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=84.97 E-value=2.4 Score=36.55 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=61.6
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCC-cEEEEeCC--------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--------~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
..||-|+|+|.-|..+|..|.+.|. +++.+|+. ....++........ ........++.+++.. ++++
T Consensus 26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~g---~~~~ 101 (222)
T d1vl6a1 26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI-TNPERLSGDLETALEG---ADFF 101 (222)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCTTCCCSCHHHHHTT---CSEE
T ss_pred hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhh-hcchhhhcchHhhccC---ccee
Confidence 4689999999999999999998876 78899976 11122221111110 0011234466777766 8877
Q ss_pred EEecCCChhHHHHHHHHHhcccCCCEEEecCCCCchh
Q 011931 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (474)
Q Consensus 78 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (474)
+..-..+...+ +....+.+..||.-+||-.+..
T Consensus 102 ~g~~~~~~~~~----e~m~~~~~rPIIFpLSNPt~~~ 134 (222)
T d1vl6a1 102 IGVSRGNILKP----EWIKKMSRKPVIFALANPVPEI 134 (222)
T ss_dssp EECSCSSCSCH----HHHTTSCSSCEEEECCSSSCSS
T ss_pred ccccccccccH----HHHhhcCCCCEEEecCCCccch
Confidence 66665442222 2334456778999999877644
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.67 E-value=0.81 Score=35.24 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011931 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (474)
Q Consensus 184 g~g~~~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~ 224 (474)
|.+..+||+...+..+..+++.|++..+++.| +..+.+.+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~G-v~~~l~~~ 40 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEEDVLEM 40 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 67889999999999999999999999999999 77554433
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.57 E-value=3.3 Score=32.76 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=66.3
Q ss_pred cCcEEEE-c--cc---HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 7 LTRIGLA-G--LA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 7 ~~~IgiI-G--lG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
+.||.|| | .| .|...++..|.+.|++|.+++.+.. ..+++.+....+..+|.|++.
T Consensus 3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~------------------~~~~~~~~~~~l~~~d~iiig 64 (148)
T d1vmea1 3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDE------------------ERPAISEILKDIPDSEALIFG 64 (148)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSS------------------CCCCHHHHHHHSTTCSEEEEE
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccc------------------cccchhHhhhhHHHCCEeEEE
Confidence 3567776 2 33 4677888888899999999876531 123445555556669999999
Q ss_pred cCCC-----hhHHHHHHHHHhcccCCCEEEecCC-C-CchhHHHHHHHHHHcCCeEEe
Q 011931 81 VKAG-----APVDETIKTLSAYMEKGDCIIDGGN-E-WYENTERREKAMAELGLLYLG 131 (474)
Q Consensus 81 vp~~-----~~v~~vl~~l~~~l~~g~iiId~st-~-~~~~~~~~~~~l~~~g~~~v~ 131 (474)
.|.. ..+...+..+.+.-..|..+.-.+| . .......+.+.+...|..+++
T Consensus 65 spt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~ 122 (148)
T d1vmea1 65 VSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILS 122 (148)
T ss_dssp ECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEE
T ss_pred ecccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEe
Confidence 9853 2466666666554334554433222 2 223445667778888887664
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=84.56 E-value=0.36 Score=41.25 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.3
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
-.|.|||.|.-|...|..+++.|.+|+++++++
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 358999999999999999999999999999764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.54 E-value=0.34 Score=37.53 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.0
Q ss_pred CcEEEEcccHhHHHHHHHHH---HCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIA---EKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~---~~G~~V~v~dr~~ 40 (474)
.+|.|||.|.+|.-+|..|. .+|.+|+++++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 47999999999999996655 4456899998764
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.44 E-value=0.36 Score=40.67 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=30.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 479999999999999999999999999998653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.37 E-value=0.46 Score=43.12 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=28.7
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
+|-|.| +|.+|+.++..|+++||+|.+.||..
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 577776 89999999999999999999999864
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.36 E-value=0.4 Score=44.09 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=29.2
Q ss_pred CcEE-EEc-ccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 8 TRIG-LAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 8 ~~Ig-iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
+||+ |.| .|-+|+.++..|.++||+|.+.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4785 555 899999999999999999999998643
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=84.30 E-value=0.18 Score=42.19 Aligned_cols=31 Identities=6% Similarity=0.153 Sum_probs=26.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEe
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYN 37 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d 37 (474)
+.+|.|||.|..|..+|..|.+.|++|.+..
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 4579999999999999999999998765543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.26 E-value=0.3 Score=40.42 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=29.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+|.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 479999999999999999999999988775544
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.13 E-value=0.8 Score=41.98 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=27.7
Q ss_pred CcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 8 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
++|-|.| .|-+|+.++..|.+.||+|.+.|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4577776 999999999999999999999986
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.11 E-value=0.43 Score=41.51 Aligned_cols=43 Identities=9% Similarity=-0.020 Sum_probs=36.1
Q ss_pred CcCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011931 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (474)
Q Consensus 6 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (474)
...+|-.+|+|. | ..+..|++.|++|+++|.+++.++.+.+..
T Consensus 45 ~~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 45 SGLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CSCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CCCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 345899999998 3 568888999999999999999998877654
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=83.87 E-value=1.4 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.5
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCC---cEEEEeCChHHHH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGF---PISVYNRTTSKVD 44 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~ 44 (474)
+||-|||.|--|.+++.+|.+.|. +....|.+.+.+.
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 40 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE 40 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence 589999999999999999998775 4567788776554
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=83.71 E-value=0.49 Score=36.51 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.9
Q ss_pred CcEEEEcccHhHHHHHHHHHH---CCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~---~G~~V~v~dr~~ 40 (474)
.+|.|||.|..|.-+|..|.+ .|.+|+++.+.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 479999999999999976654 488999998864
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=83.48 E-value=0.47 Score=39.52 Aligned_cols=30 Identities=17% Similarity=0.527 Sum_probs=27.6
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEe
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYN 37 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d 37 (474)
|||||=|+|++|+.+.+.|.+.+++|...|
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 689999999999999999999999998776
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.43 E-value=0.42 Score=41.02 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=30.4
Q ss_pred cCcEEEEcccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
...|-|||.|..|...|..+++.|.+|++++++
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 346999999999999999999999999999976
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.41 E-value=0.46 Score=36.42 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=47.3
Q ss_pred CcEEEEcc----------cHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011931 8 TRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (474)
Q Consensus 8 ~~IgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvI 77 (474)
.+|||+|+ ..-...+...|.+.|.+|.+||+.-...+ .. .+.....++.++.+. +|+|
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-----~~----~~~~~~~~l~~~~~~---sDiI 83 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-----SE----DQSVLVNDLENFKKQ---ANII 83 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-----TT----CCSEECCCHHHHHHH---CSEE
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-----hc----cCCEEEeCHHHHHhh---CCEE
Confidence 47999998 35677889999999999999998754211 00 034567899999998 9987
Q ss_pred EEecCC
Q 011931 78 IMLVKA 83 (474)
Q Consensus 78 il~vp~ 83 (474)
|+....
T Consensus 84 I~~~~~ 89 (108)
T d1dlja3 84 VTNRYD 89 (108)
T ss_dssp ECSSCC
T ss_pred EEcCCc
Confidence 766554
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.24 E-value=0.6 Score=36.86 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=35.4
Q ss_pred CCCCCCcCcEEEEccc-----------HhHHHHHHHHHHCCCcEEEEeCChHH
Q 011931 1 MVEGKQLTRIGLAGLA-----------VMGQNLALNIAEKGFPISVYNRTTSK 42 (474)
Q Consensus 1 m~~~~~~~~IgiIGlG-----------~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (474)
|-+..+..||-|||.| ..+...++.|.+.|+++.+.|.||+.
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T 53 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT 53 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence 5556667899999997 46778889999999999999999874
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=83.23 E-value=2.1 Score=34.78 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=49.1
Q ss_pred CcEEEEc-c-cHhHHHHHHHHHHCCCcEEEEeCCh-----HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011931 8 TRIGLAG-L-AVMGQNLALNIAEKGFPISVYNRTT-----SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (474)
Q Consensus 8 ~~IgiIG-l-G~mG~~lA~~L~~~G~~V~v~dr~~-----~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~ 80 (474)
.||++|| + .++-.++...+...|++++++.+.. +..+...+..... +..+..+++++++++. +|+|..-
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~-~~~i~~~~d~~~ai~~---aDviyt~ 79 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKET-DGSVSFTSNLEEALAG---ADVVYTD 79 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHH-CCEEEEESCHHHHHTT---CSEEEEC
T ss_pred CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhc-CCceEEEecHHHhhhh---hhheecc
Confidence 4799999 3 5899999999999999999887542 2222211111000 1146778899999998 9999876
Q ss_pred cC
Q 011931 81 VK 82 (474)
Q Consensus 81 vp 82 (474)
.-
T Consensus 80 ~~ 81 (161)
T d1vlva2 80 VW 81 (161)
T ss_dssp CC
T ss_pred ce
Confidence 53
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=83.17 E-value=0.77 Score=35.81 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhHhhhcccccccccCCCcchHHHHhhhcCCCccHHHHHHH
Q 011931 200 DMQLIAEAYDVLKSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQ 277 (474)
Q Consensus 200 ~~~~i~Ea~~l~~~~G~l~--~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~k~tg~~~~~~ 277 (474)
..+++.|+..++++.| ++ .+...+.+........ ....++..++.+.+. ..+|.+.. +.++.
T Consensus 37 ~~~l~~E~~~va~a~g-~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~ 100 (124)
T d1ks9a1 37 IMQICEEVAAVIEREG-HHTSAEDLRDYVMQVIDATA-ENISSMLQDIRALRH-----TEIDYING---------FLLRR 100 (124)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHTT-TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccC-CCCChHHHHHHcCCc-----chHHHHHH---------HHHHH
Confidence 4578899999999998 76 3444444433222111 122344555554432 35666654 58999
Q ss_pred HHHcCCCcccHHH
Q 011931 278 AADLSVAAPTIEE 290 (474)
Q Consensus 278 a~~~gv~~p~~~~ 290 (474)
|+++|+|+|+.+.
T Consensus 101 a~~~gi~tP~~~~ 113 (124)
T d1ks9a1 101 ARAHGIAVPENTR 113 (124)
T ss_dssp HHHHTCCCHHHHH
T ss_pred HHHhCCCCcHHHH
Confidence 9999999998743
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=82.93 E-value=0.51 Score=43.91 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.2
Q ss_pred cEE-EEc-ccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIG-LAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~Ig-iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
||. |.| +|-+|+.++..|+++||+|++.||.+.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 566 556 999999999999999999999998643
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.79 E-value=0.49 Score=43.67 Aligned_cols=30 Identities=13% Similarity=0.417 Sum_probs=28.4
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
.+-|||.|.-|..+|.+|+++|++|++.++
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 488999999999999999999999999985
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.64 E-value=0.54 Score=38.09 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.5
Q ss_pred cEEEE--cccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
.+-|+ |.|.+|..+|..|++.|++|++..+.+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 34444 9999999999999999999999998764
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=82.62 E-value=6.8 Score=30.24 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC------h-hHHH
Q 011931 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG------A-PVDE 89 (474)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil~vp~~------~-~v~~ 89 (474)
.|...++..|.+.|++|.++|.+. .+++++.+ +|.||+..|+- . .++.
T Consensus 15 ~~A~~ia~~l~~~g~~v~~~~~~~---------------------~~~~~l~~----~d~ii~g~pT~~~g~~p~~~~~~ 69 (137)
T d2fz5a1 15 AMANEIEAAVKAAGADVESVRFED---------------------TNVDDVAS----KDVILLGCPAMGSEELEDSVVEP 69 (137)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTS---------------------CCHHHHHT----CSEEEEECCCBTTTBCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEeehhh---------------------HHHhhhhc----cceEEEEEecccCCcCChhHHHH
Confidence 356677777888888888887542 13445544 89999998852 1 2344
Q ss_pred HHHHHHhcccCCCE---EEecCCCCchhHHHHHHHHHHcCCeEEecCC
Q 011931 90 TIKTLSAYMEKGDC---IIDGGNEWYENTERREKAMAELGLLYLGMGV 134 (474)
Q Consensus 90 vl~~l~~~l~~g~i---iId~st~~~~~~~~~~~~l~~~g~~~v~~pv 134 (474)
.++.+.+.++ |.. +...+.........+.+.++..|...+..++
T Consensus 70 ~~~~~~~~~~-gk~~~~fgs~g~~~~~a~~~l~~~l~~~G~~~v~~~~ 116 (137)
T d2fz5a1 70 FFTDLAPKLK-GKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIGTAI 116 (137)
T ss_dssp HHHHHGGGCS-SCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhccccC-CCeEEEEEecCCCcCHHHHHHHHHHHHCCCEEeecee
Confidence 5555555443 432 2233333445566677888889998887654
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.61 E-value=0.45 Score=41.13 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=29.3
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 47899999999999999999999999999653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.49 E-value=0.59 Score=42.64 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.5
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
++-|.| .|-+|+.++..|+++||+|+++||..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 344555 99999999999999999999999854
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=82.49 E-value=0.15 Score=42.33 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhh--HhhhcccccccccCCCcchHHHHhhhcC
Q 011931 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFL--IEITADIFGIKDDKGDGYLVDKVLDKTG 266 (474)
Q Consensus 189 ~K~v~N~~~~~~~~~i~Ea~~l~~~~G~l~~~~~~~~~~~~~~~~~~s~~--~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 266 (474)
.+.-.|...+.+...+.|+..+++..| -+++.+... .|.++-.+ ....++..+....+..+..++.+.+..+
T Consensus 26 l~~g~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~l-----aGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~ 99 (160)
T d1n1ea1 26 LGMGLNARAALIMRGLLEIRDLTAALG-GDGSAVFGL-----AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSK 99 (160)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSTTTTST-----TTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCC
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhC-CCccceecc-----ccchhheeeeecchhHHHHHHHHHhccccHHHHHHhcc
Confidence 344568888889999999999999999 666655332 12222111 1111111111111222345677777778
Q ss_pred CCccHHHHHH----HHHHcCCCcccH
Q 011931 267 MKGTGKWTVQ----QAADLSVAAPTI 288 (474)
Q Consensus 267 ~k~tg~~~~~----~a~~~gv~~p~~ 288 (474)
++-+|..+++ .++++++.+|++
T Consensus 100 ~~vEG~~t~~~v~~l~~~~~i~~Pi~ 125 (160)
T d1n1ea1 100 AVAEGVATADPLMRLAKQLKVKMPLC 125 (160)
T ss_dssp SCCHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 8899988774 467889999999
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.35 E-value=0.49 Score=43.20 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=30.8
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
..|.|||.|.-|...|..|+++|++|++.++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999865
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=82.25 E-value=0.59 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.7
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
.|.|||.|..|...|..+++.|.+|+++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4889999999999999999999999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.18 E-value=2.7 Score=35.76 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=55.7
Q ss_pred CcEEEEcccHhHHH--HHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc----CCHHHHHhhcCCCcEEEEec
Q 011931 8 TRIGLAGLAVMGQN--LALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF----RDPESFVNSIQKPRVIIMLV 81 (474)
Q Consensus 8 ~~IgiIGlG~mG~~--lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~----~s~~e~~~~l~~~dvIil~v 81 (474)
++|.=||+|.=+.. ++. +...| .|+++|.+++.++.+.+.....+ ++... .++..........|+|+..+
T Consensus 58 ~~VLDlGcG~G~~~~~la~-~v~~g-~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLAD-IVDEG-IIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CEEEEETCTTSHHHHHHHH-HTTTS-EEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CEEEEeCCcCCHHHHHHHH-hccCC-eEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEEEEecc
Confidence 57888887765433 332 22344 89999999998887766543221 22211 12221111122356666666
Q ss_pred CCChhHHHHHHHHHhcccCCCEEE
Q 011931 82 KAGAPVDETIKTLSAYMEKGDCII 105 (474)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiI 105 (474)
+...+.+.++.++...|++|..++
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~ 157 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVV 157 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cChhhHHHHHHHHHHHhccCCeEE
Confidence 666677778888888888877553
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.13 E-value=1.4 Score=40.46 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=31.2
Q ss_pred cEEEE-ccc---HhHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011931 9 RIGLA-GLA---VMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (474)
Q Consensus 9 ~IgiI-GlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (474)
||++| |.| -+|.++|+.|++.|.+|.+.+++.......
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~ 44 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFM 44 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHH
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhh
Confidence 67777 765 699999999999999999998887654443
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=0.36 Score=43.81 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCC
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT 39 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 39 (474)
++||-|.| .|.+|+.++..|+++|+.|.+.+..
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 35899997 9999999999999999999888654
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.98 E-value=0.96 Score=40.97 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=63.5
Q ss_pred cCcEEEEcccHhHHHHHHHHHHC----CC-------cEEEEeCCh----HH---HHHHHHhhhhcCCCCccccCCHHHHH
Q 011931 7 LTRIGLAGLAVMGQNLALNIAEK----GF-------PISVYNRTT----SK---VDETVERAKKEGDLPLFGFRDPESFV 68 (474)
Q Consensus 7 ~~~IgiIGlG~mG~~lA~~L~~~----G~-------~V~v~dr~~----~~---~~~l~~~~~~~~~~~~~~~~s~~e~~ 68 (474)
..||-|.|+|.-|.++|..|... |. +++++|+.- ++ .+.......... .-....+++|++
T Consensus 25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~--~~~~~~~L~e~i 102 (294)
T d1pj3a1 25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSA--PESIPDTFEDAV 102 (294)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCC--CSSCCSSHHHHH
T ss_pred HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccc--cccchhHHHHHH
Confidence 45899999999999999886544 43 599999742 11 111111100000 011235788888
Q ss_pred hhcCCCcEEEEec-CCChhHHHHHHHHHhcccCCCEEEecCCCCch
Q 011931 69 NSIQKPRVIIMLV-KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (474)
Q Consensus 69 ~~l~~~dvIil~v-p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (474)
+.++ ++++|-+. +.+...+++++.+.. +.+..||.-+||-.|.
T Consensus 103 ~~~k-ptvliG~S~~~g~ft~evi~~Ma~-~~~~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 103 NILK-PSTIIGVAGAGRLFTPDVIRAMAS-INERPVIFALSNPTAQ 146 (294)
T ss_dssp HHHC-CSEEEECCCSSCCSCHHHHHHHHH-HCSSCEEEECCSSGGG
T ss_pred HhcC-CceEEEecCCCCcCCHHHHHHHHh-cCCCcEEEEccCCCCc
Confidence 7443 66665555 444456778777664 4578899999997665
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=81.93 E-value=0.49 Score=39.60 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=30.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+|.|||.|..|..-|..+++.|.+|+++++.+
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 469999999999999999999999999998754
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=81.88 E-value=1.4 Score=31.40 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=36.3
Q ss_pred cCcEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh
Q 011931 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 50 (474)
Q Consensus 7 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 50 (474)
..+|-|.| .|.+|....+-+...|++|++..+++++.+.+.+.+
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 34687876 599999988888889999999999999988776543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=81.79 E-value=0.98 Score=37.68 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=59.6
Q ss_pred cEEEE-cccHhHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcC--CCcEEEEecCCCh
Q 011931 9 RIGLA-GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQ--KPRVIIMLVKAGA 85 (474)
Q Consensus 9 ~IgiI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~--~~dvIil~vp~~~ 85 (474)
.|-|. |.|.+|....+-....|.+|++..+++++.+.+.+.+... + ...+..+..+.+. ..|.++=+|..
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~----v-i~~~~~~~~~~l~~~~~~~vvD~Vgg-- 106 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASR----V-LPRDEFAESRPLEKQVWAGAIDTVGD-- 106 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEE----E-EEGGGSSSCCSSCCCCEEEEEESSCH--
T ss_pred cEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccc----c-cccccHHHHHHHHhhcCCeeEEEcch--
Confidence 46555 4789998888888888999999999999988777666431 1 1111111222222 25788777643
Q ss_pred hHHHHHHHHHhcccCCCEEEecCCC
Q 011931 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (474)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (474)
..+....+.+.++-.++.++..
T Consensus 107 ---~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 107 ---KVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp ---HHHHHHHHTEEEEEEEEECCCT
T ss_pred ---HHHHHHHHHhccccceEeeccc
Confidence 2455666677777777776654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.67 E-value=0.49 Score=41.34 Aligned_cols=33 Identities=9% Similarity=0.269 Sum_probs=29.5
Q ss_pred cEEEEc-ccHhHHHHHHHHHHCCCcEEEEeCChH
Q 011931 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 41 (474)
Q Consensus 9 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (474)
||-|.| .+-+|.++|+.|+++|++|.+.||+++
T Consensus 4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 676776 789999999999999999999999865
|
| >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Flavodoxin FldA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.11 E-value=5.6 Score=32.95 Aligned_cols=102 Identities=9% Similarity=0.060 Sum_probs=59.8
Q ss_pred cCcEEEE---c---ccHhHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011931 7 LTRIGLA---G---LAVMGQNLALNIAE-KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (474)
Q Consensus 7 ~~~IgiI---G---lG~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~~s~~e~~~~l~~~dvIil 79 (474)
|.||.|| . +-.|...++..+.+ .|.+|.+++... .+++++.+ +|.|++
T Consensus 1 M~kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~---------------------~~~~dl~~----~d~iii 55 (184)
T d2arka1 1 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE---------------------ATKEDVLW----ADGLAV 55 (184)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT---------------------CCHHHHHH----CSEEEE
T ss_pred CCeEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeeccc---------------------ccccchhh----CcEEEE
Confidence 3456666 2 33466666666665 578888877542 13555554 899999
Q ss_pred ecCCC-----hhHHHHHHHHHhcc---cCCCEE---EecCCCCch---hHHHHHHHHHHcCCeEEecC
Q 011931 80 LVKAG-----APVDETIKTLSAYM---EKGDCI---IDGGNEWYE---NTERREKAMAELGLLYLGMG 133 (474)
Q Consensus 80 ~vp~~-----~~v~~vl~~l~~~l---~~g~ii---Id~st~~~~---~~~~~~~~l~~~g~~~v~~p 133 (474)
.+|.- ..++..++.+...+ -.|++. ...++..-. ....+...+..+|+.+++.+
T Consensus 56 GsPty~g~~~~~~~~fld~~~~~~~~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vvg~~ 123 (184)
T d2arka1 56 GSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVT 123 (184)
T ss_dssp EEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEE
T ss_pred ecCccccccCHHHHHHHHHHHHHHHHHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEeccc
Confidence 99873 35677777654321 134433 333322211 34456677778898877543
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.02 E-value=0.71 Score=39.17 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.0
Q ss_pred CcEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
-.|-|||.|..|...|..+++.|.+|+++++..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 358899999999999999999999999998763
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.01 E-value=0.52 Score=42.93 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=30.2
Q ss_pred CcEEEEcccHhHHHHHHHHHHC--CCcEEEEeCChH
Q 011931 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTS 41 (474)
Q Consensus 8 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~ 41 (474)
.+|.|||.|.-|..-|..|+++ |++|+++++++.
T Consensus 51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 4699999999999999999964 999999998753
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.74 E-value=0.73 Score=39.20 Aligned_cols=32 Identities=22% Similarity=0.070 Sum_probs=29.3
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeCCh
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (474)
.+.|||.|..|...|..+++.|.+|.+.++.+
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 47899999999999999999999999998753
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.41 E-value=0.7 Score=42.80 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=28.1
Q ss_pred cEEEEcccHhHHHHHHHHHHCCCcEEEEeC
Q 011931 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNR 38 (474)
Q Consensus 9 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr 38 (474)
.|-|||.|.-|..+|.+|+++|++|++.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 367999999999999999999999999987
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