Citrus Sinensis ID: 011962

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
ccccccHHHHHccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHcccccccccccccccEEEccccHHHHHHHHHHHHcccccEEEcccccccccccccccccEEEEcccccccEEEcccccEEEEcccccHHHHHHHHccccccccccccccccHHHHHHccccccccccccccccEEEEEEEEcccccEEEcccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccc
ccHHHHHHHHHHHccHHHHHHccccHHccccccccccccEcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEcccccccccccccHHccccHHHHHHHHHHHcccccccHHHHHHccccccHcccccccccEEEEcccHHHHHHHHHHHHHccccEEEccccccccccEEcccccEEEEHHHHHHEEEEcccccEEEEcccHHHHHHHHHHHHccccccccccccccEcccHccccccccEEEEccccccEEEEEEEEccccEEEccccEEEccccccHHHEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEccccccHccHHHHHHHccHHHHHHHHHHHHHcccccccccccEccccccc
MAYYSFWLARLRSSSKSILSSLrtskfstqntrtRTLITlssdnssrngtpfqlfSASLLPLALAASagslamqsqthpslcdssaldsrdvniggkgsteyvvkgshkeiPQELVDELKAICQddmtmdyeeryihgkpqnsfhkavnipdiivfprsedevsKIVKccdkhkvpiipyggatsieghtlspnggvcidLSLMKSVKALHIEDMDVVVEPGIGWMELNEylepyglffpldpgpgatiggmcatrcsgSLAVRYGTMRDNVINLKVVLANGDVVKTASRARksaagydltrliigsegtlgIITEVTLRLqkipqhsvMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSkkeldaspliCTVIahagdgnfhtvilfdpskeedRQEAERLNRFMVHTALSmegtctgehgigtgkMKYLEKELGTGALETMKRIKValdpnnimnpgklipphicf
MAYYSFWLARLRSSSKSILSslrtskfstqntrtrtlitlssdnssrnGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHgkpqnsfhkavNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVlangdvvktasrarksaagydltrliigsegtlgiITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKValdpnnimnpgklipphicf
MAYYSFWLArlrsssksilsslrtsKFSTQNTRTRTLITLSSDNSSRNGTPFQlfsasllplalaasagslaMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
**YYSFWLARL*****************************************QLFSASLLPLALA************************************YVVKG***EIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFD*************NRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIM************
********************************************************ASLLPLALAASAGSLAMQSQT*********************************IPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASA***************SSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
********ARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPP*ICF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPHICF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q94AX4567 D-lactate dehydrogenase [ yes no 0.668 0.559 0.708 1e-129
Q12627 576 D-lactate dehydrogenase [ yes no 0.510 0.420 0.422 1e-50
Q7TNG8484 Probable D-lactate dehydr yes no 0.476 0.466 0.469 9e-48
P32891 587 D-lactate dehydrogenase [ yes no 0.371 0.299 0.491 4e-46
Q86WU2507 Probable D-lactate dehydr yes no 0.476 0.445 0.407 1e-45
P94535 470 Glycolate oxidase subunit yes no 0.421 0.425 0.378 4e-36
Q9V778 631 Alkyldihydroxyacetonephos yes no 0.443 0.332 0.352 2e-27
Q50685459 Uncharacterized FAD-linke yes no 0.436 0.450 0.313 3e-25
P39976 496 D-lactate dehydrogenase [ no no 0.542 0.518 0.282 7e-25
O23240559 D-2-hydroxyglutarate dehy no no 0.434 0.368 0.311 2e-23
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1 Back     alignment and function desciption
 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/319 (70%), Positives = 267/319 (83%), Gaps = 2/319 (0%)

Query: 13  SSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLA 72
           + SK+ILS LR  +      ++   +T+ S    R   P   +S+SL PLA+AASA S A
Sbjct: 8   ARSKTILSFLRPCRQLHSTPKSTGDVTVLSPVKGRRRLP-TCWSSSLFPLAIAASATSFA 66

Query: 73  -MQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDY 131
            +          SSALDSRD+ +GGK STE VVKG +K++P+EL+ +LK I +D++T DY
Sbjct: 67  YLNLSNPSISESSSALDSRDITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDY 126

Query: 132 EERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
           +ERY HGKPQNSFHKAVNIPD++VFPRSE+EVSKI+K C+++KVPI+PYGGATSIEGHTL
Sbjct: 127 DERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTL 186

Query: 192 SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGG 251
           +P GGVCID+SLMK VKALH+EDMDV+VEPGIGW+ELNEYLE YGLFFPLDPGPGA+IGG
Sbjct: 187 APKGGVCIDMSLMKRVKALHVEDMDVIVEPGIGWLELNEYLEEYGLFFPLDPGPGASIGG 246

Query: 252 MCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTL 311
           MCATRCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRLIIGSEGTL
Sbjct: 247 MCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTL 306

Query: 312 GIITEVTLRLQKIPQHSVM 330
           G+ITE+TLRLQKIPQHSV+
Sbjct: 307 GVITEITLRLQKIPQHSVV 325
Catalyzes the stereospecific oxidation of D-lactate to pyruvate. Involved in the detoxification of methylglyoxal and D-lactate, but probably not involved in the metabolization of glycolate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 2EC: .EC: 4
>sp|Q12627|DLD1_KLULA D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DLD1 PE=3 SV=2 Back     alignment and function description
>sp|Q7TNG8|LDHD_MOUSE Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1 Back     alignment and function description
>sp|P32891|DLD1_YEAST D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DLD1 PE=1 SV=2 Back     alignment and function description
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1 Back     alignment and function description
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 Back     alignment and function description
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1 Back     alignment and function description
>sp|Q50685|Y2280_MYCTU Uncharacterized FAD-linked oxidoreductase Rv2280 OS=Mycobacterium tuberculosis GN=Rv2280 PE=1 SV=1 Back     alignment and function description
>sp|P39976|DLD3_YEAST D-lactate dehydrogenase [cytochrome] 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DLD3 PE=1 SV=1 Back     alignment and function description
>sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=D2HGDH PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2144093567 AT5G06580 [Arabidopsis thalian 0.535 0.447 0.803 7.1e-180
DICTYBASE|DDB_G0270806 554 ldhd "D-lactate dehydrogenase 0.466 0.398 0.470 7.1e-90
TIGR_CMR|SPO_0634465 SPO_0634 "oxidoreductase, FAD- 0.371 0.378 0.579 1.5e-83
ZFIN|ZDB-GENE-030131-6140 497 ldhd "lactate dehydrogenase D" 0.453 0.432 0.484 6.5e-83
ASPGD|ASPL0000035818 601 AN9066 [Emericella nidulans (t 0.443 0.349 0.509 1.1e-82
ASPGD|ASPL0000030870 560 AN8317 [Emericella nidulans (t 0.481 0.407 0.484 4.5e-82
UNIPROTKB|F1LVD7483 Ldhd "Protein Ldhd" [Rattus no 0.476 0.467 0.474 5.1e-81
MGI|MGI:106428484 Ldhd "lactate dehydrogenase D" 0.470 0.460 0.475 5.1e-81
TIGR_CMR|BA_3575463 BA_3575 "glycolate oxidase, su 0.533 0.546 0.403 2.5e-79
UNIPROTKB|E2RSL6482 LDHD "Uncharacterized protein" 0.459 0.452 0.459 4.1e-79
TAIR|locus:2144093 AT5G06580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 7.1e-180, Sum P(2) = 7.1e-180
 Identities = 205/255 (80%), Positives = 239/255 (93%)

Query:    77 THPSLCDSS-ALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERY 135
             ++PS+ +SS ALDSRD+ +GGK STE VVKG +K++P+EL+ +LK I +D++T DY+ERY
Sbjct:    71 SNPSISESSSALDSRDITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERY 130

Query:   136 IHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG 195
              HGKPQNSFHKAVNIPD++VFPRSE+EVSKI+K C+++KVPI+PYGGATSIEGHTL+P G
Sbjct:   131 FHGKPQNSFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKG 190

Query:   196 GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCAT 255
             GVCID+SLMK VKALH+EDMDV+VEPGIGW+ELNEYLE YGLFFPLDPGPGA+IGGMCAT
Sbjct:   191 GVCIDMSLMKRVKALHVEDMDVIVEPGIGWLELNEYLEEYGLFFPLDPGPGASIGGMCAT 250

Query:   256 RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIIT 315
             RCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRLIIGSEGTLG+IT
Sbjct:   251 RCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTLGVIT 310

Query:   316 EVTLRLQKIPQHSVM 330
             E+TLRLQKIPQHSV+
Sbjct:   311 EITLRLQKIPQHSVV 325
GO:0003824 "catalytic activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008891 "glycolate oxidase activity" evidence=IGI
GO:0019154 "glycolate dehydrogenase activity" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0004458 "D-lactate dehydrogenase (cytochrome) activity" evidence=IDA
GO:0042802 "identical protein binding" evidence=IPI
GO:0051596 "methylglyoxal catabolic process" evidence=IMP
DICTYBASE|DDB_G0270806 ldhd "D-lactate dehydrogenase (cytochrome)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0634 SPO_0634 "oxidoreductase, FAD-binding" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6140 ldhd "lactate dehydrogenase D" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035818 AN9066 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030870 AN8317 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVD7 Ldhd "Protein Ldhd" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:106428 Ldhd "lactate dehydrogenase D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3575 BA_3575 "glycolate oxidase, subunit GlcD, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSL6 LDHD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AX4DLD_ARATH1, ., 1, ., 2, ., 40.70840.66870.5590yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.26LOW CONFIDENCE prediction!
3rd Layer1.1.20.976
3rd Layer2.5.1LOW CONFIDENCE prediction!
4th Layer1.1.2.40.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027124001
SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (568 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019865001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (961 aa)
     •• 0.917
GSVIVG00029246001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (258 aa)
     •  0.916
GSVIVG00009618001
RecName- Full=L-lactate dehydrogenase; EC=1.1.1.27; (350 aa)
     •• 0.915
GSVIVG00026376001
hypothetical protein LOC100248878 (320 aa)
     •• 0.913
GSVIVG00006511001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (622 aa)
     •  0.903
GSVIVG00025495001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (475 aa)
     •  0.903
26N20_30
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa)
     •  0.902
GSVIVG00024850001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (491 aa)
     •  0.902
GSVIVG00002610001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (510 aa)
     •  0.901
GSVIVG00025274001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_33, whole genome shotg [...] (398 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.0
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 3e-94
COG0277 459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 6e-70
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-48
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-43
pfam02913247 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t 2e-42
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 6e-27
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 1e-23
PRK11230 499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 7e-20
PRK11282352 PRK11282, glcE, glycolate oxidase FAD binding subu 3e-13
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 4e-13
TIGR01678 438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 1e-09
PLN02465 573 PLN02465, PLN02465, L-galactono-1,4-lactone dehydr 4e-09
TIGR01677 557 TIGR01677, pln_FAD_oxido, plant-specific FAD-depen 2e-08
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 6e-06
TIGR01676 541 TIGR01676, GLDHase, galactonolactone dehydrogenase 0.002
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information 
 Score =  546 bits (1409), Expect = 0.0
 Identities = 244/321 (76%), Positives = 278/321 (86%), Gaps = 8/321 (2%)

Query: 10  RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAG 69
           RLRS  ++   +     F           T+++    R   P   +S+SLLPLA+AASAG
Sbjct: 1   RLRSLLRTSRPNRALPSFPKSTLDV----TVTTPVKGRRRLPTS-WSSSLLPLAIAASAG 55

Query: 70  SLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTM 129
           SLA  +Q++PSLCDSS LDSR   +GGKGSTE+VVKG HK +PQEL+DELKAI QD+MT+
Sbjct: 56  SLAYLNQSNPSLCDSSDLDSR---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTL 112

Query: 130 DYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGH 189
           DY+ERY HGKPQNSFHKAVNIPD++VFPRSE+EVSKIVK C+K+KVPI+PYGGATSIEGH
Sbjct: 113 DYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGH 172

Query: 190 TLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI 249
           TL+P+GGVCID+SLMKSVKALH+EDMDVVVEPGIGW+ELNEYLEPYGLFFPLDPGPGATI
Sbjct: 173 TLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI 232

Query: 250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEG 309
           GGMCATRCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRL+IGSEG
Sbjct: 233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEG 292

Query: 310 TLGIITEVTLRLQKIPQHSVM 330
           TLG+ITEVTLRLQKIPQHSV+
Sbjct: 293 TLGVITEVTLRLQKIPQHSVV 313

Length = 555
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>gnl|CDD|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
KOG1232511 consensus Proteins containing the FAD binding doma 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 100.0
PLN02441525 cytokinin dehydrogenase 100.0
PRK11183564 D-lactate dehydrogenase; Provisional 100.0
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 100.0
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 100.0
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 100.0
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 100.0
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.97
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.97
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.97
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.97
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.96
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.96
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.96
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.95
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.94
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.94
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.94
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.91
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 99.87
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.6
PF09330291 Lact-deh-memb: D-lactate dehydrogenase, membrane b 97.81
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 97.57
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 97.22
PLN00107257 FAD-dependent oxidoreductase; Provisional 97.07
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 97.03
PRK09799258 putative oxidoreductase; Provisional 96.91
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.37
PF02873105 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reduct 96.28
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 96.11
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.41
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.78
PLN02906 1319 xanthine dehydrogenase 93.24
PLN00192 1344 aldehyde oxidase 93.06
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 92.06
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 90.63
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 90.07
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 88.91
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-77  Score=639.75  Aligned_cols=457  Identities=79%  Similarity=1.241  Sum_probs=392.2

Q ss_pred             HhhhchhhhhccccCCCCCCCcccccccccccCCCCCCCCCCccccccchhhHHHHHhhccccccccCCCCcccCccccc
Q 011962           10 RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDS   89 (474)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (474)
                      |+|+.+++.|.+.+++.+...|.+   ++++.+++.++. ++++| |..-++++++.++.+.+.....+.++|+.+....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (555)
T PLN02805          1 RLRSLLRTSRPNRALPSFPKSTLD---VTVTTPVKGRRR-LPTSW-SSSLLPLAIAASAGSLAYLNQSNPSLCDSSDLDS   75 (555)
T ss_pred             CcchhhhhccccccCCCCcccccC---ccccccccCCCC-CCCcc-ccccchHHHHHHHHHHHHhcCcceeecccccccc
Confidence            678899999999998866654421   222333333333 44444 2223445556666555555556668887766666


Q ss_pred             CCcccCCCCccceeecCCCCCCCHHHHHHHHhhcCCCcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHH
Q 011962           90 RDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKC  169 (474)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~  169 (474)
                      +   +|++.+++++.++..+.++++++++|++++++++.++.++++.|+++...+++....|.+|++|+|++||+++|++
T Consensus        76 ~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~  152 (555)
T PLN02805         76 R---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKS  152 (555)
T ss_pred             c---ccCccccchhhccccccchHHHHHHHHHhcCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHH
Confidence            6   8999999988888888888999999999999889999999998888765555544579999999999999999999


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCCCcee
Q 011962          170 CDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI  249 (474)
Q Consensus       170 a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~~~tv  249 (474)
                      |+++++||+|+|||||+.|++++.++||+|||++||+|.++|+++.+|+||||+++.+|+++|.++|+.+|.++++.+||
T Consensus       153 a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~~TI  232 (555)
T PLN02805        153 CNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI  232 (555)
T ss_pred             HHHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccccCh
Confidence            99999999999999999999988778999999999999999999999999999999999999999999999999988999


Q ss_pred             cccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH
Q 011962          250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV  329 (474)
Q Consensus       250 GG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~  329 (474)
                      ||++++|++|..+.+||.++|+|++++||++||++++++....+++.||||+|+++|++|+|||||+++||++|.|+...
T Consensus       233 GG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~  312 (555)
T PLN02805        233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSV  312 (555)
T ss_pred             hhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceE
Confidence            99999999999999999999999999999999999998776677778999999999999999999999999999998654


Q ss_pred             --------------------------------------------------------------------------------
Q 011962          330 --------------------------------------------------------------------------------  329 (474)
Q Consensus       330 --------------------------------------------------------------------------------  329 (474)
                                                                                                      
T Consensus       313 ~~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~~~~~p~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g  392 (555)
T PLN02805        313 VAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEAPTLMFEFIGTEAYAREQTLIVQKIASKHN  392 (555)
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhcCCCCCcceEEEEEEecCcHHHHHHHHHHHHHHHhCC
Confidence                                                                                            


Q ss_pred             ----------HHHHHHHHHHhc--------CCCcccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEE
Q 011962          330 ----------MRKEALWACFAM--------EPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTV  391 (474)
Q Consensus       330 ----------~~~~~~w~~~~~--------~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~  391 (474)
                                .+...+|..+..        .+....+.+|++||+++++++++.++++++++++....+||+||||+|++
T Consensus       393 ~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~  472 (555)
T PLN02805        393 GSDFVFAEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTI  472 (555)
T ss_pred             CceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEE
Confidence                      011345665421        12222367899999999999999999999999999999999999999999


Q ss_pred             EEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCeeCCC
Q 011962          392 ILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPH  471 (474)
Q Consensus       392 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~~~~  471 (474)
                      ++++..++++.++++++.+++.+.++++||++++|||+|+.|.+|++++++++.++.|++||+.|||+|||||||+||+|
T Consensus       473 i~~~~~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~~  552 (555)
T PLN02805        473 ILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPPH  552 (555)
T ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCcc
Confidence            99887766666778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 011962          472 ICF  474 (474)
Q Consensus       472 ~~~  474 (474)
                      +||
T Consensus       553 ~~~  555 (555)
T PLN02805        553 VCF  555 (555)
T ss_pred             ccC
Confidence            998

>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1 Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 4e-23
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 3e-10
2uuu_A 584 Alkyldihydroxyacetonephosphate Synthase In P212121 7e-22
2uuu_A584 Alkyldihydroxyacetonephosphate Synthase In P212121 4e-04
4bby_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 1e-21
4bca_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 1e-21
4bc7_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 1e-21
1wve_A 520 P-Cresol Methylhydroxylase: Alteration Of The Struc 2e-08
1dii_A 521 Crystal Structure Of P-Cresol Methylhydroxylase At 2e-08
2bvf_A 459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 7e-06
1w1j_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 1e-05
1w1k_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 2e-05
1w1l_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 2e-05
2vao_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 2e-05
1w1m_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-alc 2e-05
1e8f_A 560 Structure Of The H61t Mutant Of The Flavoenzyme Van 2e-05
1qlt_A 560 Structure Of The H422a Mutant Of The Flavoenzyme Va 2e-05
2exr_A 524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 2e-05
1e0y_A 560 Structure Of The D170sT457E DOUBLE MUTANT OF VANILL 2e-05
1dzn_A 560 Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length 2e-05
2yvs_A219 Crystal Structure Of Glycolate Oxidase Subunit Glce 3e-05
4g3t_A 403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 2e-04
4aut_A 468 Crystal Structure Of The Tuberculosis Drug Target D 2e-04
4fdn_A 481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 4e-04
3vte_A 518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 5e-04
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHI 212
           +++ P S +EV  I K  ++ +V ++P GG T + G     NG V I L     ++ +  
Sbjct: 54  LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDT 113
Query: 213 EDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGA--TIGGMCATRCSGSLAVRYGTMRD 270
               + VE G     + E        FPL  G     TIGG  +T   G+ A+ YG  RD
Sbjct: 114 SSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD 173
Query: 271 NVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQ 326
             + ++VVLA+G V    S+ +K   GYDL  L IG+EGTLGIIT  TL+L   P+
Sbjct: 174 XALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPR 229
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584 Back     alignment and structure
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of The Flavoprotein Subunit Upon Its Binding To The Cytochrome Subunit Length = 520 Back     alignment and structure
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: The505ser Mutant Length = 560 Back     alignment and structure
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Ile238thr Mutant Length = 560 Back     alignment and structure
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Phe454tyr Mutant Length = 560 Back     alignment and structure
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase In Complex With Isoeugenol Length = 560 Back     alignment and structure
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol Oxidase: Glu502gly Mutant Length = 560 Back     alignment and structure
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase In The Apo Form Length = 560 Back     alignment and structure
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL- Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From Thermus Thermophilus Hb8 Length = 219 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 1e-98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-48
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-94
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 4e-43
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-71
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-40
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 7e-67
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 8e-31
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 8e-53
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 6e-41
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-37
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 9e-37
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-36
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 9e-08
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-34
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 6e-32
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 4e-28
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 5e-27
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 5e-27
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 5e-26
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 5e-26
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 6e-26
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 2e-25
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 8e-25
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 2e-24
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 2e-23
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 9e-07
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 2e-06
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
 Score =  307 bits (787), Expect = 1e-98
 Identities = 75/251 (29%), Positives = 115/251 (45%), Gaps = 22/251 (8%)

Query: 110 EIPQELVDELKAICQDD-MTMDYEERYIHGK-------PQNSFHKAVNIPDIIVFPRSED 161
           +   E V ELKA    D +  D   R  H          +    +  N PD+IV P S +
Sbjct: 89  KQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHE 148

Query: 162 EVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVV 218
           EV ++V+   K+ V IIP GG ++I G     +     V ID+  M  V  +   +M   
Sbjct: 149 EVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTAC 208

Query: 219 VEPGIGWMELNEYLEPYGLFFPLDPGPG--ATIGGMCATRCSGSLAVRYGTMRDNVINLK 276
           ++ GI   EL + L   G+    DP     +T+GG  AT  SG  + +YG + D  ++ +
Sbjct: 209 IQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFR 268

Query: 277 VVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALW 336
            V   G +        +S AG +   +I+GSEGTLGIITE  +++  +PQ     +   +
Sbjct: 269 TVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQA---VEYYGF 323

Query: 337 ACFAMEPSFEA 347
             F   P+F  
Sbjct: 324 L-F---PTFAH 330
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 100.0
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 100.0
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 100.0
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 100.0
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.98
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.98
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.96
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.85
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.42
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.89
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.49
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.42
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.69
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 93.85
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.58
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 90.41
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
Probab=100.00  E-value=1.8e-65  Score=541.71  Aligned_cols=362  Identities=30%  Similarity=0.457  Sum_probs=316.3

Q ss_pred             cCCCCCCCHHHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCC
Q 011962          105 KGSHKEIPQELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGA  183 (474)
Q Consensus       105 ~~~~~~~~~~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG  183 (474)
                      ..+...++++++++|+++++. +|.+++.....|..+++.  +.++.|.+||+|+|++||+++|++|+++++|++++|||
T Consensus         7 ~~~~~~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~--~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgG   84 (476)
T 3pm9_A            7 QLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERN--LYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGN   84 (476)
T ss_dssp             -----CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTC--CCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSS
T ss_pred             ccCcccCCHHHHHHHHHhcCCCcEecCHHHHHHHhccccc--ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            334556888999999999985 688887777777655432  34568999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC--CceecccccccccCCC
Q 011962          184 TSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSL  261 (474)
Q Consensus       184 ~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~--~~tvGG~i~~~~~G~~  261 (474)
                      ||+.|++++.++||+|||++||+|+++|+++.+|+||||++|.+|+++|.++|+.++.+++.  ++||||++++|++|..
T Consensus        85 t~~~g~~~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~  164 (476)
T 3pm9_A           85 TGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTA  164 (476)
T ss_dssp             CCSSSTTCCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTT
T ss_pred             CCCCCCccCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCc
Confidence            99999988866799999999999988999999999999999999999999999998887654  7999999999999999


Q ss_pred             ccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH------------
Q 011962          262 AVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV------------  329 (474)
Q Consensus       262 s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~------------  329 (474)
                      +.+||.++|+|++++||++||++++++....+++.||||+++++|++|+|||||+++||++|.|+...            
T Consensus       165 ~~~yG~~~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a  244 (476)
T 3pm9_A          165 ALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDA  244 (476)
T ss_dssp             HHHHCCHHHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHH
T ss_pred             ccccCcHHHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHH
Confidence            99999999999999999999999998766667789999999999999999999999999999987543            


Q ss_pred             --------------------------------------------------------------------------------
Q 011962          330 --------------------------------------------------------------------------------  329 (474)
Q Consensus       330 --------------------------------------------------------------------------------  329 (474)
                                                                                                      
T Consensus       245 ~~~~~~~~~~~g~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~  324 (476)
T 3pm9_A          245 LKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAI  324 (476)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEEEHHHHHHHHHHTTCCCCSSSCCSEEEEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHHhcCCCceEEEecCHHHHHHHHhccCCCCCCCccCCeEEEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEE
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHHHhcC-----CCcccccccccccchhHHHHHHHHHHHhhcC--CCeEEEEeecCCCCeeEEEEeCCC-
Q 011962          330 ----MRKEALWACFAME-----PSFEAMISDVCVPLSCLAELISRSKKELDAS--PLICTVIAHAGDGNFHTVILFDPS-  397 (474)
Q Consensus       330 ----~~~~~~w~~~~~~-----~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~--~l~~~~~gh~~~g~~h~~~~~~~~-  397 (474)
                          .+.+.+|..+...     .....+.+|++||++++++++++++++++++  ++....|||+||||+|+++.++.+ 
T Consensus       325 a~~~~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~~~gH~gdGnlH~~i~~~~~~  404 (476)
T 3pm9_A          325 ANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGA  404 (476)
T ss_dssp             CCSHHHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTEEEEEEECCTTC
T ss_pred             eCCHHHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCceEEEEecCCcC
Confidence                1224567654321     1112467899999999999999999999998  899999999999999999998653 


Q ss_pred             ChH-HHHHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCee
Q 011962          398 KEE-DRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI  468 (474)
Q Consensus       398 ~~~-~~~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~  468 (474)
                      +++ ..+.++++.+++.+.+.++||++++|||+|..|++|+.+++|++.++.|++||+.|||+|||||||+|
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~gGsis~EHGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNPGki~  476 (476)
T 3pm9_A          405 DKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV  476 (476)
T ss_dssp             CHHHHHTTHHHHHHHHHHHHHHTTCBSCSSSCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBSTTSCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCEEEEcccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCcC
Confidence            232 24567789999999999999999999999999999999999999999999999999999999999986
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d1e8ga1287 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fu 1e-34
d1e8ga1 287 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fu 4e-09
d1wvfa1279 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cr 2e-34
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 8e-33
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 1e-32
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-29
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 2e-28
d1f0xa1294 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Esc 2e-25
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 6e-22
d1uxya1198 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenol 2e-10
d1hska1194 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetyleno 1e-08
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

 Score =  129 bits (324), Expect = 1e-34
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 4/146 (2%)

Query: 329 VMRKEALWACFAMEPSFEAMISDVCVPLS-CLAELISRSKKELDASPLICTVIAHAGDGN 387
           +   + L     +        S +            + +KK    + L        G   
Sbjct: 132 IPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMRE 191

Query: 388 FHTVIL--FDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGA 445
            H ++   F+      +++ + L R ++    +        H     ++        +  
Sbjct: 192 MHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSF 251

Query: 446 LETMKRIKVALDPNNIMNPGKL-IPP 470
           L   + +K A+DPN I+ PGK  + P
Sbjct: 252 LRFNEVLKNAVDPNGIIAPGKSGVWP 277
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 279 Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 294 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 100.0
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.96
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.94
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.92
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.91
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.89
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 99.79
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 97.75
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.31
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.06
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 94.04
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.89
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.59
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 91.97
d1hska2109 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 91.06
d1uxya2142 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 88.57
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.8e-40  Score=318.22  Aligned_cols=213  Identities=23%  Similarity=0.343  Sum_probs=186.5

Q ss_pred             HHHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc
Q 011962          113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL  191 (474)
Q Consensus       113 ~~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~  191 (474)
                      ++++++|++++|+ +|.+++++...|..++.+.......|++||+|+|+|||+++|++|+++++|++++|+||++.+++.
T Consensus        13 ~~~v~~l~~ivG~~~V~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~i~~~g~G~s~~~g~~   92 (236)
T d1wvfa2          13 NKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSA   92 (236)
T ss_dssp             HHHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTT
T ss_pred             HHHHHHHHHHcCCccEEECHHHHHHHhCccccccccCcCCCEEEecCCHHHHHHHHHHHHcCCcceeccccccccccccc
Confidence            3578999999986 688888888888777665555556899999999999999999999999999999999999865443


Q ss_pred             C--CCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCCCceeccccc-ccccCCCccccccc
Q 011962          192 S--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCA-TRCSGSLAVRYGTM  268 (474)
Q Consensus       192 ~--~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~~~tvGG~i~-~~~~G~~s~~yG~~  268 (474)
                      .  .+++|+|||++||+|+++|+++.+|+||||++|.||+++|.++|+.++++++..+++||.++ ++++|..+.+||.+
T Consensus        93 ~~~~~~~ividl~~mn~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~gG~i~~~~~~G~~~~~yG~~  172 (236)
T d1wvfa2          93 APVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEH  172 (236)
T ss_dssp             SCSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSSTTCBG
T ss_pred             ccccceEEEeecccccchhhhcccccceehhhhhhhhhhHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence            2  35789999999999999999999999999999999999999999999988887777777665 78899999999999


Q ss_pred             cceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhc-------cCCCeeEEEEEEEEeEecC
Q 011962          269 RDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG-------SEGTLGIITEVTLRLQKIP  325 (474)
Q Consensus       269 ~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~G-------s~G~lGIIt~~tlkl~p~p  325 (474)
                      +|+|+++|+|++||++++++....++..++++++...|       ++|+|||||++|||++|.|
T Consensus       173 ~d~v~~levVl~~G~iv~~~~~~~~~~~~~~~~~~~~G~~~~~l~SeGtlGIIt~~tlkl~P~P  236 (236)
T d1wvfa2         173 FMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP  236 (236)
T ss_dssp             GGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEECC
T ss_pred             ccceeeeEEEcCCCcEEEeCCccCCCccHHHHHhcCcCccccccccccceEEEEEEEEEEEcCC
Confidence            99999999999999999987766666666776666555       8899999999999999987
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure