Citrus Sinensis ID: 011977

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MEEPLLGESREEETKWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLFL
cccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccc
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccc
meepllgesreeeTKWVVTRGAFVEELKKLSFlaapmvgvtvSQYLLPAVSLMMAGHLGELTLASVAIATsftnvtgiiPLFGFACALETLCGqaygakqyqqigtyTYSAMFFCIAICFPISVLWIFMDKVLILlgqdpeiateACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSgllpnskleTSVLSICLTissthyfipygigaaastrvsnelgagnpqAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLFL
meepllgesreeetkwvVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSfhsffnkclfl
MeepllgesreeeTKWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLFL
**************KWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLF*
*****************VTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLFL
**************KWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLFL
****************VVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNK****
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MEEPLLGESREEETKWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCLFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q8GXM8476 MATE efflux family protei no no 0.972 0.968 0.545 1e-141
Q9SIA4476 MATE efflux family protei no no 0.976 0.972 0.558 1e-138
Q8RWF5483 MATE efflux family protei no no 0.970 0.952 0.544 1e-138
Q9SIA5476 MATE efflux family protei no no 0.968 0.964 0.527 1e-136
Q9SIA1477 MATE efflux family protei no no 0.987 0.981 0.520 1e-134
Q9SIA3476 MATE efflux family protei no no 0.976 0.972 0.525 1e-134
Q9LUH2477 MATE efflux family protei no no 0.966 0.960 0.344 7e-73
Q9LUH3469 MATE efflux family protei no no 0.940 0.950 0.361 3e-72
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.928 0.867 0.363 5e-72
Q5RFD2570 Multidrug and toxin extru yes no 0.917 0.763 0.311 1e-56
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  502 bits (1292), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/466 (54%), Positives = 334/466 (71%), Gaps = 5/466 (1%)

Query: 1   MEEPLLGESREEE---TKWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH 57
           MEEP L   R+E+    K     G    ELKK+S LAAPM  VT++QYLLP +S+M+AGH
Sbjct: 1   MEEPFL--PRDEQLVSCKSTWQSGQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGH 58

Query: 58  LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIA 117
           +GEL LA VA+ATSFTNV+G   +FG   ALETLCGQAYGA+QY++IGTYTYSAM   I 
Sbjct: 59  IGELELAGVALATSFTNVSGFSIMFGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIP 118

Query: 118 ICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLIL 177
           ICF IS+LWI+++K+LI LGQ+P+I+  A ++S+ L+PAL A A+  PL   L +Q L++
Sbjct: 119 ICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVI 178

Query: 178 PLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTR 237
            L  SA  TL FHI +CW LVF       GAA+AI LS+   AVIL+ ++R+ SSCEKTR
Sbjct: 179 SLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTR 238

Query: 238 VFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISS 297
            F+ +D  S IK++F + +P+  + CLEWW FE+LIL SGLLPN KLETSVLSICLTI +
Sbjct: 239 GFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGT 298

Query: 298 THYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAY 357
            HY IP G+ AA STRVSN+LGAGNPQ A+++    + L + E+    T+LF CR ++ Y
Sbjct: 299 LHYVIPSGVAAAVSTRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGY 358

Query: 358 AFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPL 417
            F++ K+VV+YV+++ PLL  S I+D L +VL+GVARG GWQHIGA +N+ AYY+VG P+
Sbjct: 359 TFSNSKEVVDYVADISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPV 418

Query: 418 ASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSS 463
              L F     GKGLW G+M GSAVQA +LAI+T + NW++Q   +
Sbjct: 419 GVYLAFSREWNGKGLWCGVMVGSAVQATLLAIVTASMNWKEQAEKA 464

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
255574300472 TRANSPARENT TESTA 12 protein, putative [ 0.959 0.963 0.594 1e-162
224065228479 predicted protein [Populus trichocarpa] 0.995 0.985 0.580 1e-155
224108371482 predicted protein [Populus trichocarpa] 0.989 0.973 0.555 1e-153
224079377478 predicted protein [Populus trichocarpa] 0.962 0.953 0.614 1e-153
225424132481 PREDICTED: MATE efflux family protein 5 0.981 0.966 0.578 1e-150
147787625481 hypothetical protein VITISV_022104 [Viti 0.981 0.966 0.576 1e-150
224077218475 predicted protein [Populus trichocarpa] 0.978 0.976 0.581 1e-150
147782271489 hypothetical protein VITISV_044050 [Viti 0.972 0.942 0.596 1e-147
255574294470 TRANSPARENT TESTA 12 protein, putative [ 0.972 0.980 0.579 1e-147
359488145494 PREDICTED: MATE efflux family protein 5- 0.987 0.947 0.592 1e-147
>gi|255574300|ref|XP_002528064.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532525|gb|EEF34314.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/461 (59%), Positives = 356/461 (77%), Gaps = 6/461 (1%)

Query: 12  EETKWVVTRGAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATS 71
           EE  W        +EL+KLSF+AAPMV V+VSQYLLP VSLMMAGHLG L L+ V++A+S
Sbjct: 9   EEKAWPA------QELRKLSFMAAPMVVVSVSQYLLPTVSLMMAGHLGSLPLSGVSVASS 62

Query: 72  FTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDK 131
           FTN TG   L G + ALETLCGQAYGA QY++ G+Y Y A+   + IC P S+LWIFMD+
Sbjct: 63  FTNATGFALLIGLSGALETLCGQAYGAGQYKKFGSYLYCAIISLLPICLPASILWIFMDR 122

Query: 132 VLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHI 191
           +LI +G DP+I+ EAC +SI LIPAL  FA+L+ L+   Q+QSLILP+ +S+CATL  HI
Sbjct: 123 ILISIGLDPKISMEACRYSIGLIPALFGFAILQSLVRYFQTQSLILPMLISSCATLSAHI 182

Query: 192 LLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEF 251
            LCW LVFK  F  +G A++IGLSY LN + LA YMR+SSSCEKTRV  + D+FS I EF
Sbjct: 183 PLCWALVFKWEFGAIGGAMSIGLSYWLNVIFLACYMRWSSSCEKTRVLCWKDVFSSISEF 242

Query: 252 FSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAAS 311
           + FALP+ VM CLEWW+FE+L LL+G LPNSKLETSVLSIC+T ++ +Y++ YG+GAAAS
Sbjct: 243 WRFALPSAVMVCLEWWTFELLTLLAGFLPNSKLETSVLSICITTTTVNYYVQYGLGAAAS 302

Query: 312 TRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSE 371
           TRVSNELG+GNPQ A+    V++ +++TEAVIV T LFCCR +  YA+++DK+VVNYV+E
Sbjct: 303 TRVSNELGSGNPQKARSVVRVILAVSITEAVIVSTALFCCRRIFGYAYSNDKEVVNYVTE 362

Query: 372 LVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKG 431
           + PLL  S+IMDSLQ+VLSG+ARG GWQ  GA +N  AY  VG+P++ VLCFV++L+GKG
Sbjct: 363 IAPLLCLSVIMDSLQAVLSGIARGCGWQRTGAVINFSAYNFVGVPVSVVLCFVVHLKGKG 422

Query: 432 LWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKCL 472
           LWIG++TGS VQ  +LA++T +T+W+KQ + +    F + L
Sbjct: 423 LWIGVLTGSVVQVALLALMTASTDWQKQATMAKERMFKRQL 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065228|ref|XP_002301727.1| predicted protein [Populus trichocarpa] gi|222843453|gb|EEE81000.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224079377|ref|XP_002305842.1| predicted protein [Populus trichocarpa] gi|222848806|gb|EEE86353.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147782271|emb|CAN69572.1| hypothetical protein VITISV_044050 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574294|ref|XP_002528061.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532522|gb|EEF34311.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.934 0.930 0.568 2.1e-132
TAIR|locus:2033309485 AT1G66780 "AT1G66780" [Arabido 0.926 0.905 0.574 3.4e-132
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.934 0.930 0.555 7.1e-132
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.928 0.907 0.543 9.3e-130
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.930 0.913 0.562 2.2e-128
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.924 0.920 0.545 3.6e-128
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.943 0.929 0.524 2e-127
TAIR|locus:2010926502 AT1G64820 [Arabidopsis thalian 0.928 0.876 0.531 3.7e-126
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.917 0.902 0.528 1.3e-125
TAIR|locus:2050225476 AT2G04070 "AT2G04070" [Arabido 0.924 0.920 0.541 3.4e-125
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 252/443 (56%), Positives = 320/443 (72%)

Query:    21 GAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIP 80
             G    ELKK+S LAAPM  VT++QYLLP +S+M+AGH GEL L+ VA+ATSFTNV+G   
Sbjct:    22 GQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSI 81

Query:    81 LFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDP 140
             LFG A ALETLCGQAYGAKQY++IGTYTYSA    I IC  ISVLWI+++K+LI LGQDP
Sbjct:    82 LFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDP 141

Query:   141 EIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK 200
             +I+  A ++++ LIPAL A A   PL   L +Q L+LPL      TL FHI +CW  V+ 
Sbjct:   142 DISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYA 201

Query:   201 ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVV 260
                   GAA+AI +S+    VIL+ Y+RYSSSC+KTRVF+ SD  SCIK+FF F +P+  
Sbjct:   202 FGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAA 261

Query:   261 MFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGA 320
             M CLEWW FE+LIL SGLLPN KLETSVLSICLT +S HY IP G+ AA STRVSN+LGA
Sbjct:   262 MVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLHYVIPGGVAAAVSTRVSNKLGA 321

Query:   321 GNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSI 380
             G PQ A+++    + L + E+    T+LF CR ++ YAF++ K+VV+YV+ L PLL  S 
Sbjct:   322 GIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKEVVDYVANLTPLLCLSF 381

Query:   381 IMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGS 440
             I+D   +VL+GVARG+GWQHIGA  N+ AYY+VG P+   L F   L GKGLW G++ GS
Sbjct:   382 ILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFNRELNGKGLWCGVVVGS 441

Query:   441 AVQAIVLAIITVTTNWRKQVSSS 463
             AVQAI+LA +T + NW++Q   +
Sbjct:   442 AVQAIILAFVTASINWKEQAEKA 464
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0042991 "transcription factor import into nucleus" evidence=RCA
TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050225 AT2G04070 "AT2G04070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9USK3YJ2D_SCHPONo assigned EC number0.32070.92610.8144yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002364
hypothetical protein (479 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-161
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-56
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-53
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-53
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-42
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-36
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-29
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-28
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-25
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-25
pfam01554161 pfam01554, MatE, MatE 2e-23
pfam01554161 pfam01554, MatE, MatE 2e-18
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-18
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-17
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-16
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-15
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 6e-15
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 6e-14
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-10
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 7e-10
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 8e-10
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-08
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-07
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 5e-05
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-04
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 5e-04
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 0.001
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  462 bits (1191), Expect = e-161
 Identities = 206/436 (47%), Positives = 284/436 (65%), Gaps = 1/436 (0%)

Query: 26  ELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFA 85
           E KKL  LAAP+V  ++ QY L  VS++  GHLG+L LA+ ++A+SF NVTG   L G A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 86  CALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATE 145
            AL+TLCGQA+GAK Y+ +G Y   A+   +  C PIS+LW+  + +L+LLGQDPEIA  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 146 ACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRI 205
           A  +   LIP L A+A+  PL   LQ+Q ++LPL   +   L  +ILL + LVF      
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 206 VGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLE 265
           +GAALA  +SY L  V+L LY+ +S   + T      + F     F   A+P+ +M CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 266 WWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQA 325
           WW+FEIL+LL+GLLP   +  +  SICLT +S  Y IP GI  AAS RV NELGAGNP+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 326 AQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSL 385
           A+LAA V ++L++   V+V  +L   R V AY F SD++V+  V++L+P+L+   I D L
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 386 QSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAI 445
           Q+VLSGV RG G Q +GAYVNL AYY++G+P+  +L FVL L  KGLWIG++ G  +QA+
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 446 VLAIITVTTNWRKQVS 461
           +L +I + T+W K+  
Sbjct: 420 ILLLIILRTDWDKEAE 435

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.9
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.89
PRK01766 456 multidrug efflux protein; Reviewed 99.88
TIGR01695502 mviN integral membrane protein MviN. This model re 99.83
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.82
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.79
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.76
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.75
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.72
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.72
PRK10459492 colanic acid exporter; Provisional 99.69
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.67
PRK15099416 O-antigen translocase; Provisional 99.67
COG2244480 RfbX Membrane protein involved in the export of O- 99.61
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.33
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.27
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.11
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.02
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.51
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.46
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.21
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.18
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.92
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.91
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.71
COG4267467 Predicted membrane protein [Function unknown] 97.46
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-58  Score=448.10  Aligned_cols=439  Identities=25%  Similarity=0.347  Sum_probs=417.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977           23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ  102 (474)
Q Consensus        23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  102 (474)
                      .++..|+++++++|.+++++.+.+++.+|+.++||+|++++++.++++++..+. ..+..|++.|.++.+||++|++|++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            456999999999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 011977          103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL  181 (474)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (474)
                      ++++..++++.++++.+++..++ ..+.++++.+++.++++.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999888776 99999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHhHHHHHHHHhhH
Q 011977          182 SACATLCFHILLCWYLVFK-AN-FRIVGAALAIGLSYCLNAVILALYMRYSSS-CEKTRVFIFSDIFSCIKEFFSFALPT  258 (474)
Q Consensus       182 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~l~~~~p~  258 (474)
                      .++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++.+++++++++ ......+..+++++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999987765 23332344456789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 011977          259 VVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAV  338 (474)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (474)
                      .+++......+...+.+++++|  ++.+|+|+++.++.++..+++.|++++..|.+++++|+||+|++++..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHH
Q 011977          339 TEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLA  418 (474)
Q Consensus       339 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~  418 (474)
                      .++...++.++++++++..+|++|+|+.+.+..++++..+..++++.+....+.+||.||++.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhh
Q 011977          419 SVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFH  465 (474)
Q Consensus       419 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (474)
                      +++.+.. +|..|+|++...++.++.+...+++++++|++...++++
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAAS  454 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence            9998765 899999999999999999999999999999887765543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-17
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 9e-12
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 189/445 (42%), Gaps = 30/445 (6%)
Query: 23  FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLF 82
           + +E   L  LA P++  +V+Q  +  V  +MAG +  + +A+V+IA S   +  I+   
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW-LPSILFGV 65
Query: 83  GFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEI 142
           G   AL  +  Q  GA +  +I    +  +   + +  PI  +      ++  +  +  +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 143 ATEACNFSISLI---PALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVF 199
           AT+   +  ++I   PA L F  LR     +   SL  P  +     L  +I L W  V+
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGM---SLTKPAMVIGFIGLLLNIPLNWIFVY 182
Query: 200 KA----NFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIK-----E 250
                     VG  +A  + Y +  ++L  Y+  S      +VF   + F   +      
Sbjct: 183 GKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF---ETFHKPQPKELIR 239
Query: 251 FFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAA 310
            F    P       E   F ++ LL  + P      +   + L  SS  +  P  IGAA 
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALL--VAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAV 297
Query: 311 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVS 370
           S RV ++LG  + + A +AA V ++  +  A I   +    R  +A  +  ++ VV    
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357
Query: 371 ELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA--YVNLGAYYIVGIPLASVLCFV---- 424
           +L+   +    MD++Q V +G  R  G++ + A  +    +Y+++G+P   +L       
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT 415
Query: 425 -LNLRGKGLWIGIMTGSAVQAIVLA 448
              L  KG W+G + G +  A++L 
Sbjct: 416 EQPLGAKGFWLGFIIGLSAAALMLG 440
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-91
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  285 bits (731), Expect = 1e-91
 Identities = 99/438 (22%), Positives = 184/438 (42%), Gaps = 14/438 (3%)

Query: 23  FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLF 82
           + +E   L  LA P++  +V+Q  +  V  +MAG +  + +A+V+IA S      I+   
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGV 65

Query: 83  GFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEI 142
           G   AL  +  Q  GA +  +I    +  +   + +  PI  +      ++  +  +  +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 143 ATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKA- 201
           AT+   +  ++I A+ A+ + + L       SL  P  +     L  +I L W  V+   
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185

Query: 202 ---NFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVF--IFSDIFSCIKEFFSFAL 256
                  VG  +A  + Y +  ++L  Y+  S      +VF          +   F    
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245

Query: 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSN 316
           P       E   F ++ LL   L ++ +  +   + L  SS  +  P  IGAA S RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303

Query: 317 ELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLL 376
           +LG  + + A +AA V ++  +  A I   +    R  +A  +  ++ VV    +L+   
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363

Query: 377 SFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFV-----LNLRGKG 431
           +    MD++Q V +G  RG        +    +Y+++G+P   +L          L  KG
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423

Query: 432 LWIGIMTGSAVQAIVLAI 449
            W+G + G +  A++L  
Sbjct: 424 FWLGFIIGLSAAALMLGQ 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 87.56
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.5e-50  Score=401.19  Aligned_cols=431  Identities=23%  Similarity=0.329  Sum_probs=399.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977           23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ  102 (474)
Q Consensus        23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  102 (474)
                      .++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++..+. ..+..|++.+..+.++|+.|++|++
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~   85 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence            457899999999999999999999999999999999999999999999998887 8888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977          103 QIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS  182 (474)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  182 (474)
                      +.++.+++++.+..+.+++.+++..+.++++.+++.|++..+.+..|+++..++.++........+.+|+.||++.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999987777778889988888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChhhHHhHHHHHHHHh
Q 011977          183 ACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKT--RVFIFSDIFSCIKEFFSFAL  256 (474)
Q Consensus       183 ~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~  256 (474)
                      ++++.++|+++++++++.    |++|+.|+++++.+++.+..++..++++++++.+..  +.++.+.+++..|+++++|+
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            999999999999999975    379999999999999999999988888766543221  12333456788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011977          257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL  336 (474)
Q Consensus       257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  336 (474)
                      |.++++....+...+++.+++++|  ++++|+|++++++.++..++..+++++..|.+++++|++|.|+.++..+++.++
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~  323 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT  323 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999997  889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHH
Q 011977          337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP  416 (474)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~  416 (474)
                      ...+++++++++.++++++..+|++|+|+++.+..++++++++.++++++....+.+++.||++.+++.++.+.+++++|
T Consensus       324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  403 (460)
T 3mkt_A          324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP  403 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999898999999999999999999999999999999999999999999997799999


Q ss_pred             HHHHHHHH----cC-CchhHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011977          417 LASVLCFV----LN-LRGKGLWIGIMTGSAVQAIVLAIITVTTNW  456 (474)
Q Consensus       417 ~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~  456 (474)
                      +++++...    ++ +|..|+|+++.+++.+..++..++++|...
T Consensus       404 l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~  448 (460)
T 3mkt_A          404 TGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK  448 (460)
T ss_dssp             HHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred             HHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999876    56 899999999999999998887777666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00