Citrus Sinensis ID: 011982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MEDEKKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEHHccccccccccccccccEcccccccccccEEEcccccHHHHHHHHcccccccccHccccccccccccccHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MEDEKKKKRnkkkknnkqtktttddvavgadpnhlingqkddvrsqasepadiqnvqvdadrhqsngaesaNLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSaigsdavtaltsdtepmsessdnMSSLNNRLETQGVvavkedrngingvhadppplvlssseaeysgeivqiplddkevqDLELQVVESYTDKvaavpltdapligapfRLVSFVAKYVSGadlvnknasn
Flexible Loop (DISEMBL)
medekkkkrnkkkknnkqtktttddvavgadpnHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEadkdswtqmesvsketiaglsvdiTQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAglssaigsdavTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSgadlvnknasn
Low Complexity Region (SEG)
MEDEkkkkrnkkkknnkqtktttDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVsslrsqlssdesKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Disordered region (IsUnstruct)
********************************************************************************************************************QNECDLYKEKVATL*********************************************IA******EFWL**************************************************TIAGLSVDITQLRMQVV************************************************IEAAGALIDKLITENIELVEKVNDLSVKLDR***************************************************************************GEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADL*******
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TDAPLIGAPFRLVSFVAKYVSGAD*VN*****
Disordered Region (DISEMBL)
*********************TTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK****************************STQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTAL***************SLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Disordered Region (DISPRO)
MEDEKKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQ********************************GEIVQIPLDDKEVQDLELQ*********AAVPLTDAPLIGAPFRLVSFVAKYVSG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGGLEMNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESVSKETIAGLSVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
224087896	477	predicted protein [Populus trichocarpa]	0.902	0.895	0.5	1e-107
255575616	492	conserved hypothetical protein [Ricinus	0.906	0.871	0.492	1e-103
224139390	456	predicted protein [Populus trichocarpa]	0.801	0.831	0.495	8e-95
297741755	466	unnamed protein product [Vitis vinifera]	0.923	0.937	0.456	4e-86
356566804	651	PREDICTED: uncharacterized protein LOC10	0.847	0.615	0.439	3e-76
359481328	511	PREDICTED: uncharacterized protein LOC10	0.883	0.818	0.392	3e-62
79570413	482	ATP synthase D chain-related protein [Ar	0.778	0.763	0.376	6e-54
297823743	509	hypothetical protein ARALYDRAFT_345641 [	0.756	0.703	0.372	4e-51
356530165	639	PREDICTED: uncharacterized protein LOC10	0.761	0.563	0.344	2e-48
449439795	392	PREDICTED: uncharacterized protein LOC10	0.680	0.821	0.390	5e-43

>gi|224087896|ref|XP_002308260.1| predicted protein [Populus trichocarpa] gi|222854236|gb|EEE91783.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/476 (50%), Positives = 322/476 (67%), Gaps = 49/476 (10%)

Query: 20  KTTTDDVAVGADPNHLINGQK-----DDVRSQASEPADIQNVQVDADRH--QSNGA--ES 70
           K + DDV+V A  N+  NGQ      D+   + S   D+ + + D + H  + NGA   S
Sbjct: 25  KASEDDVSVAAATNNNSNGQNHGNVNDNQVIEVSSNGDVVDAE-DFNGHYDKPNGAAPHS 83

Query: 71  ANLAEA------ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK 124
           A L E       E   L + +   EET+K LR+E +SHIQKEATLE TV+QLQNE   + 
Sbjct: 84  AALQETIKHLQNETDSLTRTKDTFEETIKRLRDENDSHIQKEATLEETVKQLQNESASHT 143

Query: 125 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 184
           +K A+LE+TI QL+  N+L +QKEAT E+TIKQL+ +ND H+Q+E  LE  I  LQSEK+
Sbjct: 144 QKEASLEDTINQLRSVNNLCIQKEATFEDTIKQLKTENDSHLQKEADLEKRIVQLQSEKD 203

Query: 185 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 244
           FWLQKEA   +K++ L+DE AAL    AS+ E+++LLE+DKDSWT  E+ +KETIA +++
Sbjct: 204 FWLQKEAGFGEKLNHLQDEKAAL----ASIGEKIRLLESDKDSWTISENTTKETIARMNI 259

Query: 245 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL-------SSDESKKLQHATSEQK 297
           D+T+LRMQVVELE+SRN+L++EN+QLKE++S+L+ QL       S   + +L    +E++
Sbjct: 260 DVTRLRMQVVELEDSRNSLVKENQQLKESISNLKLQLQNIDTSVSFANTSELGKLGAEKE 319

Query: 298 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAV---TALTS 354
           + ++QIEAA AL+DKLITEN +LVEKVN+L +KLD Q  AA  SSA G   +   + L +
Sbjct: 320 ELNSQIEAACALVDKLITENADLVEKVNELYIKLDHQGTAASFSSATGRGVIVRNSELAN 379

Query: 355 DTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQI 414
            T PM++S+ N+++L ++LE+               +  +P  +V  SSEA  SGEIVQI
Sbjct: 380 GTHPMADSNANLTALGHKLES---------------LEVEPAVVVQYSSEA-GSGEIVQI 423

Query: 415 PLDDKEVQDLELQVVESYTD-KVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 469
           PLDD EV DLE+Q  E  TD K  AVPLTDAPLIGAPFRL+SFVAKYVSG DLVN+
Sbjct: 424 PLDDNEVPDLEMQAAE--TDYKSGAVPLTDAPLIGAPFRLISFVAKYVSGGDLVNR 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575616|ref|XP_002528708.1| conserved hypothetical protein [Ricinus communis] gi|223531880|gb|EEF33697.1| conserved hypothetical protein [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/489 (49%), Positives = 320/489 (65%), Gaps = 60/489 (12%)

Query: 18  QTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQN------VQVDA-DRHQSNGAES 70
           Q+KTT DD       +H  NG   +  +Q ++ A+IQN        VD  DRHQ+ G E 
Sbjct: 22  QSKTTEDDAVFVGGVDHQ-NGASSNGNNQVTDLAEIQNGDVQNAANVDGFDRHQNTGTEI 80

Query: 71  ANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 130
           +   EAE+Q   QREAI EET+K L+NE + HIQKEA L  ++++LQ E D+ + K   L
Sbjct: 81  SISVEAEKQQWFQREAIFEETIKRLQNENDLHIQKEAILRKSIKELQEENDIQRRKQVML 140

Query: 131 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE--------------------- 169
           EET+++LQ  ND  +QKEATLEETIK+LRN ND  +Q+E                     
Sbjct: 141 EETVKELQNANDSALQKEATLEETIKELRNTNDSALQKEVKLEKTIKELRSAKDSALQKE 200

Query: 170 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229
            GL+  IA LQSE E +LQ +A LE+K+    +E+A+L +K ASLEE++K LE++KDSWT
Sbjct: 201 AGLKKKIAQLQSENELFLQTKAGLEEKLQLSLNENASLGLKEASLEEKIKQLESEKDSWT 260

Query: 230 QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289
             E+ +KETIA ++VD+T+LRMQVVELEESRN+LL+EN+QL EN+S L+ Q+ + E+   
Sbjct: 261 LAENTTKETIARMNVDVTRLRMQVVELEESRNSLLKENQQLMENISDLQLQVQNLETNIS 320

Query: 290 QHATS-EQK-------DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLS 341
             +TS EQK       D  +QIEAA AL+DKLITEN ELVEKVN+L +KLD+QS  A  S
Sbjct: 321 SASTSCEQKKHALEGEDLESQIEAACALVDKLITENAELVEKVNELYIKLDQQSTTATAS 380

Query: 342 SAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLS 401
           S  G+  +T + +D+ P  +S +NMS + ++LE+   + V+          AD       
Sbjct: 381 S--GNAEITYI-ADSIP--QSDENMSVVVHKLES---LEVEHAAALPYAAEAD------- 425

Query: 402 SSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYV 461
                 SGEIVQIPLDD E++DLELQ VES  DK  AVP++DAPLIGAPFRL+SFVAKYV
Sbjct: 426 ------SGEIVQIPLDDNELRDLELQAVES--DKTEAVPISDAPLIGAPFRLISFVAKYV 477

Query: 462 SGADLVNKN 470
           SGADLV+K+
Sbjct: 478 SGADLVDKD 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139390|ref|XP_002323089.1| predicted protein [Populus trichocarpa] gi|222867719|gb|EEF04850.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 55/434 (12%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEG 111
           D+++     D+      +S+ LAEAE+Q  LQREA  EE                     
Sbjct: 66  DVEDFNTHNDKPNGVAPQSSILAEAEKQWWLQREATFEE--------------------- 104

Query: 112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG 171
           T++QL++E D + +K  T EETI+QLQ +ND  +QKEAT E+TIKQL+ +NDLH+Q+E G
Sbjct: 105 TIKQLEDENDSHIQKEVTFEETIKQLQDENDSHIQKEATFEDTIKQLKTENDLHMQKEAG 164

Query: 172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM 231
           LEM I  LQ EK+FW  KEA LE+K++ L DE AAL +K ASLEE++  L+++KDSW   
Sbjct: 165 LEMKIMQLQREKDFWFLKEAGLEEKLNLLLDEKAALGLKLASLEEKIGQLDSEKDSWAVS 224

Query: 232 ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL---------S 282
           E+ +KE +  +++DIT LRMQVVELE SRN+L++EN+QLKE+VS L+ QL         S
Sbjct: 225 ENTTKEIVGRMNIDITSLRMQVVELEYSRNSLVKENQQLKESVSDLKLQLQNVETQQSIS 284

Query: 283 SDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSS 342
           S  + +L    +E++D ++QIEAA AL+DKLITEN ELVEKVN+L +KLD+Q  AA LSS
Sbjct: 285 SANTSELGKNDAEKEDLNSQIEAACALVDKLITENAELVEKVNELYIKLDQQKAAASLSS 344

Query: 343 AIGSDAV---TALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLV 399
           + GSD +   + L + T PMSESS++   L +                   + ADPP  V
Sbjct: 345 SAGSDVILRNSELANGTPPMSESSESALGLKSE-----------------SLDADPPAAV 387

Query: 400 LSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAK 459
           L  S    + EIVQIPLDD EV D+E+Q      DK + VPLTDAPLIGAPFRL+SFVAK
Sbjct: 388 LPQSSEPDAEEIVQIPLDDNEVPDVEMQA----EDK-SGVPLTDAPLIGAPFRLISFVAK 442

Query: 460 YVSGADLVNKNASN 473
           YVSGADLV+K+ SN
Sbjct: 443 YVSGADLVSKDDSN 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741755|emb|CBI32887.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 227/497 (45%), Positives = 317/497 (63%), Gaps = 60/497 (12%)

Query: 1   MEDEKKKKRNKKKKNNKQTKTTTDDVAVG-----ADPNHL---INGQKDDVRSQASEPAD 52
           MEDEKKKK+NKKKKN +   +    V VG      D NHL    +G ++ +       AD
Sbjct: 1   MEDEKKKKKNKKKKNKQHKASEGPAVGVGEEIASLDENHLSTQTHGNQESI-------AD 53

Query: 53  IQN--VQ---VDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEA 107
           +QN  VQ   VD + H +NG +S+ L EAE+Q  LQREA L+E +K L N++E H QKE+
Sbjct: 54  VQNRDVQKENVDLNGHCANGTDSSILVEAEKQKWLQREASLQERIKQLENDKELHTQKES 113

Query: 108 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167
            L         E D                ++Q    +++EATLEE IKQL+++NDLH+Q
Sbjct: 114 ILA--------EAD----------------KKQ---WLKREATLEERIKQLQDENDLHMQ 146

Query: 168 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227
           +E GLEM I  LQ+EK  W+QKEA LE KI QL DE++ L++K ASLEE+++  E +++S
Sbjct: 147 KEAGLEMRIVQLQTEKHSWIQKEATLEGKIQQLLDENSTLSVKWASLEEKVEHQERERNS 206

Query: 228 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-DES 286
           W   E+ S+E I+ L+ +  +L+ QV+ELEE R N+LQEN+ LKE VSSL+ Q+   +ES
Sbjct: 207 WVLKENSSREIISSLNDENRKLQGQVMELEEFRINILQENQLLKEKVSSLQLQIKELEES 266

Query: 287 KKLQHATSE-------QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG 339
               HA++E         D + Q EAA  LI+KL +EN +LVEKVN+L ++LD+  VAAG
Sbjct: 267 VSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRVAAG 326

Query: 340 LSSAIGSD-AVTALTSD--TEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPP 396
           LSSAIG D  + AL +    + MSE +DN S+ + R++    V + ++R   +    +  
Sbjct: 327 LSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMDPLEAVPMNDERISADIEDVEQT 386

Query: 397 PLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSF 456
            ++ +SSE + SGEIVQIPLD+ E ++LELQ  E+  D+   VP+TDAPLIGAPFR +SF
Sbjct: 387 AVIPNSSETDDSGEIVQIPLDENEARELELQAAEN--DRNTTVPITDAPLIGAPFRFISF 444

Query: 457 VAKYVSGADLVNKNASN 473
           VAKYVSGADLV K+++N
Sbjct: 445 VAKYVSGADLVGKSSTN 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566804|ref|XP_003551617.1| PREDICTED: uncharacterized protein LOC100796148 [Glycine max]

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 182/414 (43%), Positives = 260/414 (62%), Gaps = 13/414 (3%)

Query: 72  NLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLE 131
           NL E    H+ Q+E + +ET+K L+ E E HIQ+EA  + T++ L+ E D   +KV +LE
Sbjct: 236 NLKEKNDVHV-QKETLSQETIKKLKEENEVHIQEEAISKETIKNLKEENDKLLQKVVSLE 294

Query: 132 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 191
           E I  LQ  N+L+ QK  +LE  I  L N+     ++E GLE  IA LQSE    LQKEA
Sbjct: 295 EVINNLQTDNELQTQKHESLERKINLLENELSSFSEKEVGLETRIAQLQSENNSLLQKEA 354

Query: 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 251
            L ++ +QL +E A L++K  SLE+++ LLE+D +S  + E+ +KETI+ L+ +I  L+ 
Sbjct: 355 TLVERTNQLLNEKAVLSLKGESLEQKIYLLESDLNSLVKKENSTKETISNLNGNIAVLQA 414

Query: 252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT---------SEQKDFSTQ 302
           QV ELEESRNNL  EN+QL+E VSSL+S + + E+      +         SE +D  ++
Sbjct: 415 QVEELEESRNNLFLENQQLREKVSSLQSTVQNHENSNTSSCSWDASVKDLASENEDLKSE 474

Query: 303 IEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTE---PM 359
           IEAA  L++KL+ EN ELVEKV +L V+LD +S   G S    S+ +T     T    P+
Sbjct: 475 IEAAFTLVEKLMAENAELVEKVTELCVELDHRSAEVGHSGVTESNGMTEFVKPTGVAIPL 534

Query: 360 SESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDK 419
            ES++  S  + +L +    +VK++ N  +  H        S   A+ +GEIVQIPLDD 
Sbjct: 535 PESAEYASVSSPKLNSLEETSVKDNGNSNDAKHVVGVTSNSSLVSADDAGEIVQIPLDDN 594

Query: 420 EVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN 473
           E+QD+ELQ  ++  +   AVP+TDAPLIGAPFRL+SFVA +VSGADLVN+++SN
Sbjct: 595 EIQDIELQDAKNVENDADAVPITDAPLIGAPFRLISFVANFVSGADLVNQSSSN 648

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481328|ref|XP_002279159.2| PREDICTED: uncharacterized protein LOC100249907 [Vitis vinifera]

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 300/561 (53%), Gaps = 143/561 (25%)

Query: 1   MEDEKKKKRNKKKKNNKQTKTTTDDVAVGA-----DPNHL---INGQKDDVRSQASEPAD 52
           MEDEKKKK+NKKKKN +   +    V VG      D NHL    +G ++ +       AD
Sbjct: 1   MEDEKKKKKNKKKKNKQHKASEGPAVGVGEEIASLDENHLSTQTHGNQESI-------AD 53

Query: 53  IQN--VQ---VDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEA 107
           +QN  VQ   VD + H +NG +S+ L EAE+Q  LQREA L+E +K L N++E H QKE+
Sbjct: 54  VQNRDVQKENVDLNGHCANGTDSSILVEAEKQKWLQREASLQERIKQLENDKELHTQKES 113

Query: 108 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167
            L         E D                ++Q    +++EATLEE IKQL+++NDLH+Q
Sbjct: 114 ILA--------EAD----------------KKQ---WLKREATLEERIKQLQDENDLHMQ 146

Query: 168 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227
           +E GLEM I  LQ+EK  W+QKEA LE KI QL DE++ L++K                 
Sbjct: 147 KEAGLEMRIVQLQTEKHSWIQKEATLEGKIQQLLDENSTLSVK----------------- 189

Query: 228 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-DES 286
           W      S+E I+ L+ +  +L+ QV+ELEE R N+LQEN+ LKE VSSL+ Q+   +ES
Sbjct: 190 WNS----SREIISSLNDENRKLQGQVMELEEFRINILQENQLLKEKVSSLQLQIKELEES 245

Query: 287 KKLQHATSE-------QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG 339
               HA++E         D + Q EAA  LI+KL +EN +LVEKVN+L ++LD+  VAAG
Sbjct: 246 VSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRVAAG 305

Query: 340 LSSAIGSD-AVTALTSD--TEPMSESSDNMSSLNNRLETQGVVAVK----------EDRN 386
           LSSAIG D  + AL +    + MSE +DN S+ + R+E+   V +            D N
Sbjct: 306 LSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMESVEAVPIHGQSSQEAVPMHDEN 365

Query: 387 GINGVHADP-------PPLVLSSSEA-----EYSGEIVQI---------PLDDK----EV 421
               V           P L  SS EA     + S E V I         P++D+    ++
Sbjct: 366 SQEAVPIHDQRSLEAVPMLDESSQEAVPIHDQRSIEAVPINDKSPLEAVPMNDERISADI 425

Query: 422 QDLELQVV---ESYTD---KVAAVPL-----------------------TDAPLIGAPFR 452
           +D+E   V    S TD   ++  +PL                       TDAPLIGAPFR
Sbjct: 426 EDVEQTAVIPNSSETDDSGEIVQIPLDENEARELELQAAENDRNTTVPITDAPLIGAPFR 485

Query: 453 LVSFVAKYVSGADLVNKNASN 473
            +SFVAKYVSGADLV K+++N
Sbjct: 486 FISFVAKYVSGADLVGKSSTN 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79570413|ref|NP_181392.2| ATP synthase D chain-related protein [Arabidopsis thaliana] gi|51968994|dbj|BAD43189.1| hypothetical protein [Arabidopsis thaliana] gi|330254458|gb|AEC09552.1| ATP synthase D chain-related protein [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 149/396 (37%), Positives = 239/396 (60%), Gaps = 28/396 (7%)

Query: 75  EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 134
           E E +  +Q+EA+LEE + HL+ E E+H+  EA LEG +  L+ E + + +  A LEE +
Sbjct: 113 ETENEAHIQKEALLEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQNEALLEEKL 172

Query: 135 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 194
             L+ +N+  +Q EA LEE +   R +N+ H Q E  LE  +   +++ +  L++ ++ E
Sbjct: 173 LHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDMLLREMSSTE 232

Query: 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV 254
            ++ QL DE +    K ASLE++++ L+ D++S    E  S+E I+ L+ +I +LR QV 
Sbjct: 233 AQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNEIARLRAQVT 292

Query: 255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 314
           ELE+S++NLL++N+ LKE +S+L+ Q  + +S       + +++ ++QIEAA  L++KLI
Sbjct: 293 ELEKSKSNLLEQNQSLKETISNLQVQHENHDSNA---KGASEEELNSQIEAACTLVEKLI 349

Query: 315 TENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLE 374
           TEN +LVEKVN+L +KL++   A+  S AI  +   +L  +  P+    D +  ++N  +
Sbjct: 350 TENADLVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPI---HDELIRIDNSRD 404

Query: 375 TQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTD 434
                ++K  RN   G   +  PL L++     +GE+           D+E QV  +  D
Sbjct: 405 MD-TASIK--RNFSEGEIEETVPLSLNA-----NGEV-----------DVESQVAVAGED 445

Query: 435 KV-AAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 469
           ++ A VPL DAPLIGAPFRLVSFVA+YVSGADL  K
Sbjct: 446 EINAGVPLADAPLIGAPFRLVSFVARYVSGADLAAK 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823743|ref|XP_002879754.1| hypothetical protein ARALYDRAFT_345641 [Arabidopsis lyrata subsp. lyrata] gi|297325593|gb|EFH56013.1| hypothetical protein ARALYDRAFT_345641 [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 235/422 (55%), Gaps = 64/422 (15%)

Query: 85  EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 144
           E +LEET+K LR E  S++QKEA LE  +  L+ E + + +  A LEE +  L+ +N+  
Sbjct: 114 EVLLEETIKQLREENGSYLQKEAFLEERLVHLKTENEAHIQNEALLEEKLLHLRTENEAH 173

Query: 145 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE-------------------- 184
            Q EA LEE +  LR +N+ HIQ E  LE  + +L+SE E                    
Sbjct: 174 TQNEALLEEKLLHLRTENEDHIQNEARLEERLLHLRSENEAHKQNEDHLEVGGQNNIVFM 233

Query: 185 ----------------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 228
                             L++ ++ E ++ QL DE +    K  SLE++++ L+ D++S 
Sbjct: 234 QEKLEERLVQYKNKNDMLLREMSSTEAQMRQLLDERSTFTQKEVSLEKKVQQLQHDEESL 293

Query: 229 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288
              E  S+E I+ L+ +I +LR QV ELEES++NLL++N+ LKE VSSL+ Q  + +S  
Sbjct: 294 VAEEKSSREMISSLNNEIARLRAQVTELEESKSNLLEQNQSLKETVSSLQVQHENHDSNA 353

Query: 289 LQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDA 348
                + +++ ++QIEAA  L++KLITEN ELVEKVN+L +KL++   A+  S AI  + 
Sbjct: 354 ---KGASEEELNSQIEAACTLVEKLITENAELVEKVNELCIKLNQSQHASPESLAIEVEK 410

Query: 349 VTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYS 408
             +L  +  P+    D +  ++N  +    +     RN   G   +  PL L++     +
Sbjct: 411 SESL--EEIPI---HDELIRIDNSKDMDTALI---KRNLSEGEIEETVPLSLNA-----N 457

Query: 409 GEIVQIPLDDKEVQDLELQVVESYTDKVAA-VPLTDAPLIGAPFRLVSFVAKYVSGADLV 467
           GE+           D+E QVV +  D+V+A VPL DAPLIGAPFRLVSFVA+YVSGADL 
Sbjct: 458 GEV-----------DVESQVVVAGEDEVSAGVPLADAPLIGAPFRLVSFVARYVSGADLA 506

Query: 468 NK 469
            K
Sbjct: 507 AK 508

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530165|ref|XP_003533654.1| PREDICTED: uncharacterized protein LOC100811378 [Glycine max]

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 226/438 (51%), Gaps = 78/438 (17%)

Query: 72  NLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLE 131
           NL E    H+ Q+E + +ET++ L+ E E HIQKEA  + T+++ + E D   +K  +LE
Sbjct: 241 NLKEKNDMHM-QKETLSQETIRKLKEENEGHIQKEAISKETIKKFEEENDKLVQKETSLE 299

Query: 132 ETIQQLQRQNDLRMQKEATLE----------------------------ETIKQLRNQND 163
             I QLQ +N+  +QKE  ++                            E+++ L  +  
Sbjct: 300 MRIAQLQSENNSLLQKEYIIDGILDLGPNPDHWAEQNKDQLLDPSPKEMESLEGLYQKAA 359

Query: 164 L------HIQR--EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLE 215
           L      +I R    GLE   A L SE    LQKEA L ++ +QL +E   L++K  SLE
Sbjct: 360 LWRVMFSYIGRRLHVGLETRFAQLHSENNSLLQKEATLVERTNQLLNEKEVLSLKGESLE 419

Query: 216 ERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 275
           +++ LLE+D  S  + E+ +K+TI+ L+ +I  L++Q +                     
Sbjct: 420 QKIYLLESDLSSLVEKENSTKDTISKLNGNIAVLQVQDL--------------------- 458

Query: 276 SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 335
                             SE KD  ++IEAA  L++KL+ EN ELVEKV +L V+LD QS
Sbjct: 459 -----------------ASENKDLKSEIEAAFTLVEKLMAENAELVEKVTELCVELDHQS 501

Query: 336 VAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADP 395
                +        T +     P  ES++  S    +L +    +VK++ N  N      
Sbjct: 502 AVTEPNEMTEFAKPTGVAI---PPPESAEYASVSAPKLNSLEETSVKDNGNSFNDAKHVV 558

Query: 396 PPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVS 455
             +  SS  ++ +GEIVQIPLDD E+QD+ELQ  ++  +   AVP+TDAPLIGAPFRL+S
Sbjct: 559 GVMSNSSLLSDDAGEIVQIPLDDNEIQDIELQDAKNVENDADAVPITDAPLIGAPFRLIS 618

Query: 456 FVAKYVSGADLVNKNASN 473
           FVA +VSGADLV+ ++SN
Sbjct: 619 FVANFVSGADLVDPSSSN 636

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439795|ref|XP_004137671.1| PREDICTED: uncharacterized protein LOC101221440 [Cucumis sativus] gi|449497171|ref|XP_004160333.1| PREDICTED: uncharacterized LOC101221440 [Cucumis sativus]

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 197/333 (59%), Gaps = 11/333 (3%)

Query: 147 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 206
           K+A L++TIK L  +N++HI+R   L++ +   + EK  WLQKE AL  KI  L+++  A
Sbjct: 62  KDAKLDDTIKHLHEENNIHIKRMADLDLKLVECEGEKYSWLQKEEALMDKIRNLQEDKTA 121

Query: 207 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 266
           L+++ A L   +KLLE DK S    E  S+ETI   + DI++L+ QVVELEE + +LL E
Sbjct: 122 LDLEGARLLNIIKLLERDKASLILDEKSSRETIVDKNKDISRLQAQVVELEEQKRDLLHE 181

Query: 267 NRQLKENVSSLRSQLSSDESK---KLQHATSE--QKDFSTQIEAAGALIDKLITENIELV 321
           N+QL   V+  +S+L + E K      H++    ++  ++Q++AA  L+DKLITEN EL+
Sbjct: 182 NKQLTGKVADYQSKLLNLERKISSTYIHSSDRVTKEILNSQVDAARILVDKLITENAELI 241

Query: 322 EKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDN--MSSLNNRLETQGVV 379
            KVN+L V+L R +    L S +  D +    +DT   +ES     ++S+ +      + 
Sbjct: 242 GKVNELFVELQRVT-KTELPSGVVPDQMATEATDTTTFNESEPPVILNSVTSGKSLDALK 300

Query: 380 AVKEDRNGINGVHADPPPLVLSS--SEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVA 437
           +V    + I G   D     ++S  S    +GEI QI L   E Q+   ++  +  D+  
Sbjct: 301 SVSIHSHSIGGDFVDLGSDFMASEASMPMAAGEIEQIQLHQFEDQNGTRELPATEIDE-K 359

Query: 438 AVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKN 470
            V L+DAPLIGAP+RL+SF+AKYVSGADLV K+
Sbjct: 360 DVLLSDAPLIGAPYRLISFMAKYVSGADLVGKS 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
TAIR|locus:2064168	482	AT2G38580 "AT2G38580" [Arabido	0.701	0.688	0.331	2.4e-44
MGI|MGI:3041210	718	Ccdc157 "coiled-coil domain co	0.784	0.516	0.217	1.4e-12
UNIPROTKB|K7GMY0	626	LOC100515063 "Uncharacterized	0.778	0.587	0.217	2.3e-10
UNIPROTKB|I3LED2	703	LOC100515063 "Uncharacterized	0.778	0.523	0.217	2.8e-10
UNIPROTKB|K7GSC4	713	LOC100515063 "Uncharacterized	0.778	0.516	0.217	2.9e-10
UNIPROTKB|F1PWZ2	1941	MYH7B "Uncharacterized protein	0.832	0.202	0.215	6.3e-10
SGD|S000004300	911	IMH1 "Protein involved in vesi	0.756	0.392	0.204	1.8e-09
MGI|MGI:1924298	692	Ccdc41 "coiled-coil domain con	0.668	0.456	0.230	2.7e-09
RGD|1305732	1679	Gcc2 "GRIP and coiled-coil dom	0.657	0.185	0.214	3.9e-09
RGD|1310167	1411	Eea1 "early endosome antigen 1	0.668	0.223	0.224	5.3e-09

TAIR|locus:2064168 AT2G38580 "AT2G38580" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 114/344 (33%), Positives = 196/344 (56%)

Query:    69 ESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA 128
             E+    E E +  +Q+EA+LEE + HL+ E E+H+  EA LEG +  L+ E + + +  A
Sbjct:   107 ENVRRLETENEAHIQKEALLEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQNEA 166

Query:   129 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188
              LEE +  L+ +N+  +Q EA LEE +   R +N+ H Q E  LE  +   +++ +  L+
Sbjct:   167 LLEEKLLHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDMLLR 226

Query:   189 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 248
             + ++ E ++ QL DE +    K ASLE++++ L+ D++S    E  S+E I+ L+ +I +
Sbjct:   227 EMSSTEAQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNEIAR 286

Query:   249 LRMQVVELEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGA 308
             LR QV ELE+S++NLL++N+ LKE +                   SE+ + ++QIEAA  
Sbjct:   287 LRAQVTELEKSKSNLLEQNQSLKETISNLQVQHENHDSNA--KGASEE-ELNSQIEAACT 343

Query:   309 LIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSS 368
             L++KLITEN +LVEKVN+L +KL++   A+  S AI  +   +L  +  P+    D +  
Sbjct:   344 LVEKLITENADLVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPIH---DELIR 398

Query:   369 LNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSS-EAEYSGEI 411
             ++N  +     ++K  RN   G   +  PL L+++ E +   ++
Sbjct:   399 IDNSRDMD-TASIK--RNFSEGEIEETVPLSLNANGEVDVESQV 439

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:3041210 Ccdc157 "coiled-coil domain containing 157" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 85/391 (21%), Positives = 157/391 (40%)

Query:    38 GQKDDVRSQASEPAD-IQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLR 96
             GQKD +R Q S+    +Q  Q    R       +    E +R  LL     L+  V  L 
Sbjct:   309 GQKDGLRKQVSKLEQALQQEQGQRQRQTEEAERTLAKCEHDRHQLLTETCDLKTKVAVLE 368

Query:    97 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 156
              + +   +    +E   QQL+ E     E+ A  E  +QQL+ Q  L   +     + I+
Sbjct:   369 GDLKQQQKSIQAMEAKAQQLEEE----GERRAAAERQVQQLEEQVQLLAGRLDGASQQIR 424

Query:   157 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 216
                 + D    R   +  +  +LQ+++   LQ+   L+Q+  +LR        +R+ LEE
Sbjct:   425 WASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDCLDQEREELRGSLDEAEAQRSELEE 484

Query:   217 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN--V 274
             +L+ L++D++         +E +  L  +   L     +L+ + + L Q+  +LKE   +
Sbjct:   485 QLQSLQSDREQEQCQLQAQQELLQSLQQEKQDLEQVTTDLQLTISELRQQLEELKERERL 544

Query:   275 XXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIEL---VEKVNDLSVKL 331
                          ++Q +++  +D   Q++A    I  L  EN  L   + K+ +++ + 
Sbjct:   545 LVAFPDLHQPEEAQIQSSSNVTQDMERQVQANAIRIQVLQEENKRLQSMLTKIREVAQQG 604

Query:   332 DRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGV 391
               + V  G    + S     +   T P +++    S L  R ++ G       R    G+
Sbjct:   605 GLKMVPQG---QLWSPPYKGIQGATPP-AQAQSAFSGLTGRRQSPGSRTSSTGRTHPGGL 660

Query:   392 HADP---P---PLVLSSSEAEYSGEIVQIPL 416
                P   P   P   S  +  +S    Q P+
Sbjct:   661 RTSPSRQPGGLPSKFSLGDGSHSASCTQNPI 691

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|K7GMY0 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 86/396 (21%), Positives = 174/396 (43%)

Query:    39 QKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAE---AERQHLLQREAILEETVKHL 95
             ++ ++  Q  E    + +Q+++   Q     S+NL +   + ++ +++   + EE +K  
Sbjct:   237 ERSNLERQEHEELQQKVLQIESLLQQEKEL-SSNLQQKLCSFQEEMIKERNLFEEELKQA 295

Query:    96 RNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ----QLQRQNDLRMQKEATL 151
              +E ++  QKE   E  V+QL+ E +   E++  LEE ++    +L++ +    Q    L
Sbjct:   296 LDELDNLQQKEEQAETLVKQLEKEAESRAEELKLLEEKLKGKEAELEKSDAAHTQATLLL 355

Query:   152 EETIKQ-LRNQNDLHIQREGGLEMNIANLQSEK--EFWLQKEAALEQKISQLRD-ESAAL 207
             +E     ++N  D+  Q E    +  + ++  K     LQ++ A  +K ++  D +   L
Sbjct:   356 QERYNSTVQNLGDVTAQFESYKTLTASEIEDLKLENASLQEKVAKAEKSTE--DVQHQIL 413

Query:   208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQE 266
               + A+ E    LL+    S  +   + + T++ L   IT L+ Q+ +  E+ +  L +E
Sbjct:   414 ETENANQEYARMLLDLQTKSALKEAEIKEITVSSLK-KITDLQNQLKQQGEDFKKQLEEE 472

Query:   267 NRQL-KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 325
              R++ KEN                +   ++ K F  Q++A  A    L+ E+ E  E++N
Sbjct:   473 TRKIEKENSMAELTEEMNKWRLLYEELYNKTKPFQLQLDAFEAEKQALLNEHGEAQEQLN 532

Query:   326 DLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRL--ETQGVVAVKE 383
              L     R S A  L        +  +    +  S+    +S L  +L    Q    ++E
Sbjct:   533 KL-----RDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRTQLAKRKQSEAKLQE 587

Query:   384 DRNGINGV-HADPPPLVLSSSEAEYSGEIVQIPLDD 418
             + N + G+ H DP    L  S+      +++ PL +
Sbjct:   588 ELNKVLGIKHFDPSKAFLHESKENL---VLKTPLKE 620

GO:0005540 "hyaluronic acid binding" evidence=IEA

UNIPROTKB|I3LED2 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 86/396 (21%), Positives = 174/396 (43%)

Query:    39 QKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAE---AERQHLLQREAILEETVKHL 95
             ++ ++  Q  E    + +Q+++   Q     S+NL +   + ++ +++   + EE +K  
Sbjct:   303 ERSNLERQEHEELQQKVLQIESLLQQEKEL-SSNLQQKLCSFQEEMIKERNLFEEELKQA 361

Query:    96 RNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ----QLQRQNDLRMQKEATL 151
              +E ++  QKE   E  V+QL+ E +   E++  LEE ++    +L++ +    Q    L
Sbjct:   362 LDELDNLQQKEEQAETLVKQLEKEAESRAEELKLLEEKLKGKEAELEKSDAAHTQATLLL 421

Query:   152 EETIKQ-LRNQNDLHIQREGGLEMNIANLQSEK--EFWLQKEAALEQKISQLRD-ESAAL 207
             +E     ++N  D+  Q E    +  + ++  K     LQ++ A  +K ++  D +   L
Sbjct:   422 QERYNSTVQNLGDVTAQFESYKTLTASEIEDLKLENASLQEKVAKAEKSTE--DVQHQIL 479

Query:   208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQE 266
               + A+ E    LL+    S  +   + + T++ L   IT L+ Q+ +  E+ +  L +E
Sbjct:   480 ETENANQEYARMLLDLQTKSALKEAEIKEITVSSLK-KITDLQNQLKQQGEDFKKQLEEE 538

Query:   267 NRQL-KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 325
              R++ KEN                +   ++ K F  Q++A  A    L+ E+ E  E++N
Sbjct:   539 TRKIEKENSMAELTEEMNKWRLLYEELYNKTKPFQLQLDAFEAEKQALLNEHGEAQEQLN 598

Query:   326 DLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRL--ETQGVVAVKE 383
              L     R S A  L        +  +    +  S+    +S L  +L    Q    ++E
Sbjct:   599 KL-----RDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRTQLAKRKQSEAKLQE 653

Query:   384 DRNGINGV-HADPPPLVLSSSEAEYSGEIVQIPLDD 418
             + N + G+ H DP    L  S+      +++ PL +
Sbjct:   654 ELNKVLGIKHFDPSKAFLHESKENL---VLKTPLKE 686

GO:0005540 "hyaluronic acid binding" evidence=IEA

UNIPROTKB|K7GSC4 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 86/396 (21%), Positives = 174/396 (43%)

Query:    39 QKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAE---AERQHLLQREAILEETVKHL 95
             ++ ++  Q  E    + +Q+++   Q     S+NL +   + ++ +++   + EE +K  
Sbjct:   324 ERSNLERQEHEELQQKVLQIESLLQQEKEL-SSNLQQKLCSFQEEMIKERNLFEEELKQA 382

Query:    96 RNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ----QLQRQNDLRMQKEATL 151
              +E ++  QKE   E  V+QL+ E +   E++  LEE ++    +L++ +    Q    L
Sbjct:   383 LDELDNLQQKEEQAETLVKQLEKEAESRAEELKLLEEKLKGKEAELEKSDAAHTQATLLL 442

Query:   152 EETIKQ-LRNQNDLHIQREGGLEMNIANLQSEK--EFWLQKEAALEQKISQLRD-ESAAL 207
             +E     ++N  D+  Q E    +  + ++  K     LQ++ A  +K ++  D +   L
Sbjct:   443 QERYNSTVQNLGDVTAQFESYKTLTASEIEDLKLENASLQEKVAKAEKSTE--DVQHQIL 500

Query:   208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQE 266
               + A+ E    LL+    S  +   + + T++ L   IT L+ Q+ +  E+ +  L +E
Sbjct:   501 ETENANQEYARMLLDLQTKSALKEAEIKEITVSSLK-KITDLQNQLKQQGEDFKKQLEEE 559

Query:   267 NRQL-KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 325
              R++ KEN                +   ++ K F  Q++A  A    L+ E+ E  E++N
Sbjct:   560 TRKIEKENSMAELTEEMNKWRLLYEELYNKTKPFQLQLDAFEAEKQALLNEHGEAQEQLN 619

Query:   326 DLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRL--ETQGVVAVKE 383
              L     R S A  L        +  +    +  S+    +S L  +L    Q    ++E
Sbjct:   620 KL-----RDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRTQLAKRKQSEAKLQE 674

Query:   384 DRNGINGV-HADPPPLVLSSSEAEYSGEIVQIPLDD 418
             + N + G+ H DP    L  S+      +++ PL +
Sbjct:   675 ELNKVLGIKHFDPSKAFLHESKENL---VLKTPLKE 707

GO:0005540 "hyaluronic acid binding" evidence=IEA

UNIPROTKB|F1PWZ2 MYH7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 92/427 (21%), Positives = 189/427 (44%)

Query:    41 DDVRSQAS-EPADIQNVQVDAD----RHQSNGAESANLAEAERQHLLQR----EAILEET 91
             +D  S+A  +  ++Q   VDA     R Q+   E + L E E++ L+ +    +A   ++
Sbjct:  1260 EDQLSEAKVKVEELQRQLVDASTQRGRLQTESGELSRLLE-EKESLISQLSRGKASATQS 1318

Query:    92 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR----QN----DL 143
             ++ LR + E   + ++ L   VQ L+++CDL +E+     E   +LQR     N      
Sbjct:  1319 LEELRRQLEEESKAKSALAHAVQALRHDCDLLREQHEEEAEAQAELQRLLSKANAEVAQW 1378

Query:   144 RMQKEA-TLEET--IKQLRNQNDLHIQR-EGGLEMNIANLQS-EK-EFWLQKEAA-LEQK 196
             R + EA  ++ T  +++ + +  L +Q  E G+E   A   S EK +  LQ E+  +  +
Sbjct:  1379 RSKYEADAIQRTEELEEAKKKLALRLQEAEEGVEAAHAKCSSLEKAKLRLQTESEDVTLE 1438

Query:   197 ISQLRDESAALNMKRASLEERLK-LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 255
             + +    +AAL+ K+  LE  L+     ++++  ++E+  +E   GL  ++ +LR    E
Sbjct:  1439 LERATSAAAALDKKQRHLERALEERRRQEEETQRELEAAQREA-RGLGTELFRLRHSHEE 1497

Query:   256 LEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLIT 315
               E+   L +EN+ L+E +            K +Q     +K    +     A +++   
Sbjct:  1498 ALEALETLKRENKNLQEEISDLTDQVSLSG-KSIQELEKAKKALEGEKSELQAALEE--A 1554

Query:   316 ENIELVEKVNDLSVKLDRQSVAAGLSSAIGS--DAVTALTSDTEPMSESSDNMSSLNNRL 373
             E    +E+   L ++L+   V A +   +    +  T L  + +   ES         R 
Sbjct:  1555 EGALELEETKTLRIQLELSQVKAEVDRKLAEKDEECTNLRRNHQRAVESLQASLDAETRA 1614

Query:   374 ETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEV-QDLELQVVESY 432
               + +   K+    +N +          + EA+ +  ++Q  L +++  +D E ++V   
Sbjct:  1615 RNEALRLKKKMEGDLNDLELQLGHATRQAMEAQAATRLLQAQLKEEQAGRDEEQRLVAEL 1674

Query:   433 TDKVAAV 439
              ++  A+
Sbjct:  1675 REQAQAL 1681

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

SGD|S000004300 IMH1 "Protein involved in vesicular transport" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 172 (65.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 78/382 (20%), Positives = 160/382 (41%)

Query:    33 NHLINGQKDDVRSQASEP-ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEET 91
             N L++  KD+++  +S+   +++ V+++ D  +   A      EA+   L  +  +L + 
Sbjct:   404 NELVDA-KDEIKESSSKQNEEVKTVKLELDDLRHKNATMIEAYEAKNTELRSKIELLSKK 462

Query:    92 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATL 151
             V+HL+N      +++ T +  V +L  E      + + + + +  L+     + +  + L
Sbjct:   463 VEHLKNLCTEKEKEQTTSQNKVAKLNEEISQLTYEKSNITKELTSLRTSYKQKEKTVSYL 522

Query:   152 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 211
             EE +KQ   Q D+  +    L  + A + +  +   ++   L   I++  +       + 
Sbjct:   523 EEQVKQFSEQKDVAEKSTEQLRKDHAKISNRLDLLKKENETLHNDIAKNSNSYEEYLKEN 582

Query:   212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271
               L ERL +L+   ++   ++S S E I  +     +L    V+L+ES   +L    +L 
Sbjct:   583 GKLSERLNILQEKYNTLQNVKSNSNEHIDSIKRQCEELN---VKLKESTKKILSLEDELN 639

Query:   272 ENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331
             E               +   + S+  D S Q E    L +KL      L ++ N L  +L
Sbjct:   640 EYANIVQDKTREANTLRRLVSDSQTDDSSKQKE----LENKLAY----LTDEKNKLEAEL 691

Query:   332 DRQSVAAGLSSAIGSDAVTALTSDT-------EPMSESSDNMSSLNNRLETQGVVAVKED 384
             D Q+             VT L S+        E +    D +  +NN ++ +   A  +D
Sbjct:   692 DLQTSRKATELQEWKHTVTELKSEIHALKLREEGLKSEVDALKHVNNDIKRK-TQATSDD 750

Query:   385 RNGINGVHADPPPLVLSSSEAE 406
              + +  + ++   L LS S+A+
Sbjct:   751 SDQLEQITSN---LKLSLSKAD 769

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:1924298 Ccdc41 "coiled-coil domain containing 41" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 81/352 (23%), Positives = 155/352 (44%)

Query:    51 ADIQNVQVDADRHQSN--GAESANLAEAERQHLLQRE-AILEETVKHLR--NERE-SHIQ 104
             A+ Q+ ++ A+R +     +   N     + H   RE + L   VK L+  N+ E + I+
Sbjct:   259 AEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIK 318

Query:   105 KEAT-----LEGTVQQLQNECDLYKEKVATLEETIQQ-----LQRQNDLRMQKEATLEET 154
              EA      LE    ++Q+E D  +     L+ T++      +++  +L  + +A  EE 
Sbjct:   319 LEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEG 378

Query:   155 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA-LEQKI--SQLRDESAALNMKR 211
              ++L    D  ++ E  L  ++  ++ E++ W Q E    E+K+  SQ+ +E+A   ++ 
Sbjct:   379 YQKLMVLQDEKLELENRLS-DLEKMKVERDVWRQSEKEQCEEKLRASQMAEEAARRELQS 437

Query:   212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271
               L+ + +++  +K    ++E+      + L   I+ L++QV  L +S N+LL  N  LK
Sbjct:   438 TRLKLQQQIVNTEKAEKEKLEN------SELKQQISHLQIQVTSLTQSENDLLNSNHMLK 491

Query:   272 ENVXXXXXX--XXXXXXKKLQ---HATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 326
             + V              +K Q     T E+K     +E    L ++ IT+     EK N 
Sbjct:   492 DMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQW-LEEKHKLHER-ITDR---EEKYNQ 546

Query:   327 LSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGV 378
                KL R + A     ++  + +  L    E +    + + + N  L  Q V
Sbjct:   547 AKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNV 598

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1305732 Gcc2 "GRIP and coiled-coil domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 70/326 (21%), Positives = 141/326 (43%)

Query:    44 RSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAI--LEETVKHLRNERES 101
             + QAS+  ++Q     A   +    E+ N  + E + LL +E +  LE T+K+L+ +   
Sbjct:   505 QQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSM 564

Query:   102 HI----QKEATL---EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET 154
             ++    QK+  L   E  +  L  E D +  K+ T  E I  L ++ +   +    L E 
Sbjct:   565 YLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREA 624

Query:   155 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 214
              +Q    N    QR   L   +  +  EK    Q +  +  ++  + ++  AL+ K  SL
Sbjct:   625 AEQAAQHNSELRQRVSELTGKLDEILREKS---QNDQNIMVQMKTMTEDQEALSSKIKSL 681

Query:   215 EERLKLLEADKDSWTQ-MESVSKETIAGLSVDITQLRMQVVELEESRNNL--LQENRQLK 271
              E    L ++K   ++ +E++  +        + +   ++  + E R++L  L EN QL+
Sbjct:   682 YEENNRLHSEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQ 741

Query:   272 ENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331
             ++             +      +E++D  T ++A G  +  +  E   LV + +   ++L
Sbjct:   742 KSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLEL 801

Query:   332 DRQSVAAGLSSAIGSDAVTALTSDTE 357
             +R+       S +  + + AL  D+E
Sbjct:   802 ERRIKCLQEESVVQCEELRALVRDSE 827

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=ISO;ISS

GO:0006622 "protein targeting to lysosome" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0031023 "microtubule organizing center organization" evidence=ISO;ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO;ISS

GO:0034453 "microtubule anchoring" evidence=ISO;ISS

GO:0034499 "late endosome to Golgi transport" evidence=ISO;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0070861 "regulation of protein exit from endoplasmic reticulum" evidence=ISO;ISS

GO:0071955 "recycling endosome to Golgi transport" evidence=ISO;ISS

GO:0090161 "Golgi ribbon formation" evidence=ISO;ISS

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

RGD|1310167 Eea1 "early endosome antigen 1" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 76/338 (22%), Positives = 148/338 (43%)

Query:    64 QSNGAESANLAEA-ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDL 122
             Q+   E+A L +  E+ H LQ++  L + ++ L+N+ ESH Q E  L   VQ+ +     
Sbjct:   554 QAGEGETAVLNQLQEKNHALQQQ--LTQLMEKLKNQSESHKQAEENLHDQVQEQKAHLRA 611

Query:   123 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 182
              +++V +LE ++ +L  Q  L   KE   +  I Q++ + +L +  E       A+LQ+ 
Sbjct:   612 AQDRVLSLETSVSELSSQ--LNESKEKVSQLDI-QIKAKTELLLSAEAAKTAQRADLQNH 668

Query:   183 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK---LLEADKDSWTQMESVSKETI 239
              +     + AL+ K  +L   SA L+   A  +E+ +    LE+    + +     ++  
Sbjct:   669 LD---TAQNALQDKQQELNKVSAQLDQVTAKFQEKQEHCTQLESHLKDYKEKHLSLEQKA 725

Query:   240 AGLSVDITQLRMQVVELEESRNNL---LQENRQLKENVXXXXXXXXXXXXKK---LQHAT 293
               L   I +L    +E++ SR      LQ+ RQL  ++            ++   + H  
Sbjct:   726 EDLEGQIKKLEANNLEVKASREQAVQSLQQQRQLSTDLELRNAELRKQLQEQKEVVSHTK 785

Query:   294 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ--SVAAGLSSAIGSDAVTA 351
              + ++ S  +E     + K   E + L ++   LS   + Q   ++  + +AI    V  
Sbjct:   786 LDLQNKSEALENIKQTLTKKEEEKVVLKQEFEKLSQDSEAQHKELSDRMQAAITELMVMT 845

Query:   352 LTSDT--EPMSESSDNMSSLNNRLETQGVVAVKEDRNG 387
                D     +S +   +S +++ L+T      KE + G
Sbjct:   846 AQKDALLAELSTTKGKLSKVSDSLQTSRSEFEKESQKG 883

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA;ISO

GO:0006897 "endocytosis" evidence=IEA;ISO

GO:0006906 "vesicle fusion" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA;ISO

GO:0030742 "GTP-dependent protein binding" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0055037 "recycling endosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-05
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	6e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
pfam05622	713	pfam05622, HOOK, HOOK protein	4e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
pfam00429	560	pfam00429, TLV_coat, ENV polyprotein (coat polypro	0.003
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 67/262 (25%), Positives = 124/262 (47%), Gaps = 8/262 (3%)

Query: 75  EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 134
           E E   L  +   LEE +K L+NE  S       L   +++L+ + +  K ++A LEE +
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 135 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 194
           +QLQ +          LEE +++L  + +   +R   LE  + +L+       ++   LE
Sbjct: 733 EQLQSR-------LEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV 254
           +K   L++E   L  +    E RL  LE + +S  Q     ++ I  L  +I +L  ++ 
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Query: 255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 314
           ELEE    L +E  +LKE +  L ++       +L+    E+++   ++    + + +L 
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEEELRELESELAELK 904

Query: 315 TENIELVEKVNDLSVKLDRQSV 336
            E  +L E++ +L  KL+R  V
Sbjct: 905 EEIEKLRERLEELEAKLERLEV 926

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.4 bits (165), Expect = 8e-12
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 14/217 (6%)

Query: 74  AEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEET 133
            + E   L +    L+  ++ L  E E   ++   L+  +++L+ E +  +E +A L+E 
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780

Query: 134 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL 193
           I++L+ +     ++   LEE +++   +              +  L+ E E   Q+   L
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERR--------------LDALERELESLEQRRERL 826

Query: 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV 253
           EQ+I +L +E   L  K   LEE L+ LE + +   +     +     L  ++ +L  + 
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886

Query: 254 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQ 290
            ELEE    L  E  +LKE +  LR +L   E+K  +
Sbjct: 887 EELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 60/294 (20%), Positives = 129/294 (43%), Gaps = 14/294 (4%)

Query: 40  KDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNER 99
           + ++     E   ++    +  R  S   +     EAE + L +R A L + +  L  E 
Sbjct: 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763

Query: 100 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 159
           E   ++    E  + +        + ++  LE  I+QL+ +          L E + +LR
Sbjct: 764 EELEERLEEAEEELAEA-------EAEIEELEAQIEQLKEELK-------ALREALDELR 809

Query: 160 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 219
            +  L  +    L   + +L+       ++   LE++I +L ++  +L  +   LEE ++
Sbjct: 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

Query: 220 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 279
            LE++ ++     +  +E +A L  ++ +L  ++ ELE  R+ L +E  +L+E ++ L  
Sbjct: 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

Query: 280 QLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333
           +L   E +         +++S  +E A AL +K+  +  E   ++  L  K+  
Sbjct: 930 RLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 57/302 (18%), Positives = 124/302 (41%), Gaps = 25/302 (8%)

Query: 36  INGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHL 95
           +  Q + +  QA +    Q ++ +    +        L  A+ + L +    LEE +  L
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELE------LALLLAKLKELRKELEELEEELSRL 251

Query: 96  RNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI 155
             E E   ++    E  +++L       K ++  L E +++LQ +     ++   LE  I
Sbjct: 252 EEELEELQEELEEAEKEIEEL-------KSELEELREELEELQEELLELKEEIEELEGEI 304

Query: 156 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLE 215
             LR + +        LE  +  L+ + E   ++    E  + +L    A L   +  LE
Sbjct: 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364

Query: 216 ERLKLLEADKDS----WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271
           E+L  L  + +       +  +  +  +A +  ++ +L+ ++  LEE    L +    LK
Sbjct: 365 EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLK 424

Query: 272 ENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331
           E +  L ++L   +        +E ++ + ++E     +++L     EL  ++ +L  +L
Sbjct: 425 EELKELEAELEELQ--------TELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476

Query: 332 DR 333
            R
Sbjct: 477 QR 478

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 74/326 (22%), Positives = 154/326 (47%), Gaps = 25/326 (7%)

Query: 70  SANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 129
            A L E E   L+ R   L E ++ L+ E +   ++   L   +Q+L+ + +  + +V+ 
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278

Query: 130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 189
           LEE I++LQ++      + + LE+  + LR +     ++   LE  +  L+S+ +   ++
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 190 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW-TQMESVSKETIAGLSVDITQ 248
            A LE+K+ +L++E  +L  +   LE  L+ LE+  +    Q+E++  + +A L + I  
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK-VAQLELQIAS 397

Query: 249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGA 308
           L  ++  LE     L     +L++ +  L  +L   E K+LQ           ++E    
Sbjct: 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ----------AELEELEE 447

Query: 309 LIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSS 368
            +++L  E   L E + +L  +L+               A+ A   +   +    D++  
Sbjct: 448 ELEELQEELERLEEALEELREELEEA-----------EQALDAAERELAQLQARLDSLER 496

Query: 369 LNNRLE--TQGVVAVKEDRNGINGVH 392
           L   LE  ++GV A+ ++++G++G+ 
Sbjct: 497 LQENLEGFSEGVKALLKNQSGLSGIL 522

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 65/262 (24%), Positives = 107/262 (40%), Gaps = 29/262 (11%)

Query: 93  KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152
           + L  + E   +K A LE  + +L+ E +  +E++  L + +++L RQ     +  A LE
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 153 ETIKQLRNQNDLH-------IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ------ 199
             ++QL  +                 LE  +   + E      +   LE +I Q      
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 200 --------LRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 251
                   LR E   LN + A+L ERL+ LE    +  +     +E I  LS DI  L  
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859

Query: 252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALID 311
           ++ ELEE    L  E   L    +SL   L+           SE ++ S ++    +   
Sbjct: 860 EIEELEELIEELESELEALLNERASLEEALAL--------LRSELEELSEELRELESKRS 911

Query: 312 KLITENIELVEKVNDLSVKLDR 333
           +L  E  EL EK+  L ++L+ 
Sbjct: 912 ELRRELEELREKLAQLELRLEG 933

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 37/187 (19%), Positives = 83/187 (44%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLE 110
             ++ ++   +  +    E   L E   Q L + E   EE  + L    E   +    L 
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382

Query: 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170
             + +L+ E    + ++  L+  I+ L+ + +   ++   L+E +K+L  + +       
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE 442

Query: 171 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230
            L   +  L+ + E    +   LE+++++L++E   L  + +SLE RL  LEA++ +   
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502

Query: 231 MESVSKE 237
           + +V + 
Sbjct: 503 VRAVLEA 509

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 24/218 (11%)

Query: 69  ESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA 128
              +L     + L      LEE ++ L+ + E+  ++    E  +++L+      +E   
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361

Query: 129 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188
            LEE                  LEE  + LR +          +   +  L+ E E    
Sbjct: 362 ELEE----------KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES--- 408

Query: 189 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 248
               LE+++ +L +    L  +   LE  L+ L+ + +          E +  L   + +
Sbjct: 409 ----LEERLERLSERLEDLKEELKELEAELEELQTELE-------ELNEELEELEEQLEE 457

Query: 249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286
           LR ++ ELE     L +E ++L++ +SSL ++L   E+
Sbjct: 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 69  ESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA 128
           E     + E   L    + LE+  + LR    +  ++   LE  +++L+++ D   E++A
Sbjct: 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340

Query: 129 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188
            LEE +++L+ + +    +   LE  +++L ++ +        LE  +  L+S+      
Sbjct: 341 ELEEKLEELKEELESLEAELEELEAELEELESRLE-------ELEEQLETLRSKVAQLEL 393

Query: 189 KEAALEQKISQLRDESAALNMKRASLEERL-----KLLEADKDSWTQMESVSKETIAGLS 243
           + A+L  +I +L      L  +R  L++ +     KL EA+           +E +  L 
Sbjct: 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453

Query: 244 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291
            ++ +L   + EL E      Q     +  ++ L+++L S E  +   
Sbjct: 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 67/324 (20%), Positives = 134/324 (41%), Gaps = 29/324 (8%)

Query: 33  NHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETV 92
              + G K ++ S  SE   I+N   +  +  S+ +      E E + L Q E  L+E +
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 93  KHLR-------NERESHIQKEATLEGTVQQLQNECDLYKEKVATLE---------ETIQQ 136
           + L         E E+   +   LE  +++L+ +    +E +  LE         E   +
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 137 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK 196
           L +  +   + EA L E  ++L   N L +++E  LE  I  LQ ++    ++  ++E++
Sbjct: 800 LSKLEEEVSRIEARLREIEQKL---NRLTLEKE-YLEKEIQELQEQRIDLKEQIKSIEKE 855

Query: 197 ISQLRDESAALNMKRA-------SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 249
           I  L  +   L  +          LE RL  L+ ++D         +  I  L   I + 
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915

Query: 250 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGAL 309
           R ++ EL+     L +E  ++++           +E   L+   +E +    +I A   +
Sbjct: 916 RKRLSELKAKLEALEEELSEIEDPKGEDEE--IPEEELSLEDVQAELQRVEEEIRALEPV 973

Query: 310 IDKLITENIELVEKVNDLSVKLDR 333
               I E  E+++++++L  K  +
Sbjct: 974 NMLAIQEYEEVLKRLDELKEKRAK 997

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 52/270 (19%), Positives = 115/270 (42%), Gaps = 6/270 (2%)

Query: 67  GAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 126
           G+ +        +        L E ++ L+ E  S   +   +E  + +L  E      K
Sbjct: 658 GSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK 717

Query: 127 VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 186
           +  +E+ I+QL+++ +   ++   LEE +  L  + +        LE  I  L+ +    
Sbjct: 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777

Query: 187 LQKEAALEQKIS-----QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 241
            +    LE ++S     +++ E + L  + + +E RL+ +E   +  T  +   ++ I  
Sbjct: 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837

Query: 242 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFST 301
           L      L+ Q+  +E+   NL  +  +L+E +  L + L  D   +L     E+ +   
Sbjct: 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL-RDLESRLGDLKKERDELEA 896

Query: 302 QIEAAGALIDKLITENIELVEKVNDLSVKL 331
           Q+      I++L  +  +  +++++L  KL
Sbjct: 897 QLRELERKIEELEAQIEKKRKRLSELKAKL 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 42/218 (19%), Positives = 94/218 (43%), Gaps = 6/218 (2%)

Query: 123 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 182
            +E    LE T + L+R  DL  + E  LE+  +Q          +    E+ +A L ++
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233

Query: 183 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL 242
            +   ++   LE+++S+L +E   L  +    E+ ++ L+++ +   +     +E +  L
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 243 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATSEQ 296
             +I +L  ++  L E    L  E  +L+E +  L+ ++ + + +       L+      
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353

Query: 297 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 334
            +     E     +  L+ E  EL E + +   +L+ +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAE 391

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 56/250 (22%), Positives = 115/250 (46%), Gaps = 12/250 (4%)

Query: 81  LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEET---IQQL 137
            ++R   +EE +K    E E  +++   +   + +L+ E +  +++V  LEE    I++L
Sbjct: 184 FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243

Query: 138 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 197
           +++ +     +  LEE I++L  + +   +    LE  +  L+  KE   +    L +  
Sbjct: 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI-KLSEFY 302

Query: 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 257
            +  DE   +  + + LEE +  +E       + E   +E    L   + +L  ++ ELE
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELE 358

Query: 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN 317
           E R+ L +E +  KE +  L+ +L+    +KL+    E +    +IE     I K+    
Sbjct: 359 E-RHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEE---ISKITARI 414

Query: 318 IELVEKVNDL 327
            EL +++ +L
Sbjct: 415 GELKKEIKEL 424

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 39/225 (17%), Positives = 89/225 (39%), Gaps = 2/225 (0%)

Query: 58  VDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQ 117
           ++A+      + +    E E     +R A LE  +  L  E E   ++         +L 
Sbjct: 299 LEAEIASLERSIAEKERELED--AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356

Query: 118 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 177
            E    KE++  L   ++++ ++      +     E +++L+ + +   +    L+  + 
Sbjct: 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416

Query: 178 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKE 237
            L  E        A +E KI++L +E     ++    E +L+ L AD   + Q     KE
Sbjct: 417 RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

Query: 238 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 282
               +  ++++L+ ++ E E       +  R  +     L++ + 
Sbjct: 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 20/234 (8%)

Query: 104 QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 163
           ++   LE  ++ L+ E +  +E++   E+ ++   R   L  ++E  LEE I + R   +
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERRE-DLEELIAERRETIE 533

Query: 164 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 223
              +R   L    A L++E E   +  A  E++  + R+E A LN K A L+ER++ L  
Sbjct: 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-- 591

Query: 224 DKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 283
                        E I  L   I     ++  L E R  L + N + +E ++  R +   
Sbjct: 592 -------------ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638

Query: 284 DESK----KLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333
            E++    +++ A  +++     +E     +D+L  E  +L  ++  +  +L+ 
Sbjct: 639 LEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692

Length = 880

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 64/306 (20%), Positives = 119/306 (38%), Gaps = 30/306 (9%)

Query: 39  QKDDVRSQASEPADIQNVQVDADRHQSNG----AESANLAEAERQHLLQREAILEETVKH 94
           Q +     A E A ++N   +A R   +              ER+ L ++   +E   K 
Sbjct: 221 QSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKA 280

Query: 95  LRNERESHIQKEATL-------EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 147
            R +          L       + T  QLQ E +  ++   T EE  ++ +   +  + K
Sbjct: 281 NRAQLRELAADPLPLLLIPNLLDSTKAQLQKE-EQSQQNQLTQEELEERDKELLE-SLPK 338

Query: 148 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 207
            A   E +K++  +    I +    +  I +  S  E   Q E  ++Q   +L+D  + L
Sbjct: 339 LALPAEHVKEIAAEL-AEIDKPATTDSEIPHRLSGSEL-TQLEVLIQQVKRELQDAKSQL 396

Query: 208 NMKRASLEERLKLLEADKDSWTQMESV-SKETIAGLSVDITQLRMQVVELEESRNNLLQE 266
             +   LEE L  ++       ++ ++ S+E IA L  ++ + + ++   E     LL++
Sbjct: 397 LKELRELEEELAEVD------KKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQ 450

Query: 267 NRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE--LVEKV 324
              LKE + +LR  L     +K+     E+      I  A     K + E  E  L  K+
Sbjct: 451 LETLKEAIEALRKTLDEKTKQKINAFELER-----AITIA-DKAKKTLKEFREKLLERKL 504

Query: 325 NDLSVK 330
             L  +
Sbjct: 505 QQLEEE 510

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 69/299 (23%), Positives = 108/299 (36%), Gaps = 38/299 (12%)

Query: 67  GAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK-E 125
            +  A   +AE Q L+Q  A LEE     +                +Q+LQNE    K +
Sbjct: 617 QSAVAKQKQAEEQ-LVQANAELEE----QKRAEAEARTALKQARLDLQRLQNEQQSLKDK 671

Query: 126 KVATLEETIQQLQRQ-NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 184
               + E  QQ + Q   L  Q +  LE+    L    D    RE   E           
Sbjct: 672 LELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDF--RELRTER--------LA 721

Query: 185 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 244
            W   E  L+ +++QL   SAA+   R   + RLK L+   D       V   T+  L  
Sbjct: 722 KWQVVEGELDNQLAQL---SAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKR 778

Query: 245 DITQL----------RMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESK 287
            I +L          R +V E           R++L +E   L   +  L S    +  +
Sbjct: 779 QIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSA-EELQQ 837

Query: 288 KLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGS 346
           +L     + K    ++E     ++K + +  EL+  + D   +L      A  + A GS
Sbjct: 838 ELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQAEGS 896

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 23/248 (9%)

Query: 128 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 187
             ++E  QQL+R    R + E       ++   +    ++ +  LE     ++ +     
Sbjct: 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250

Query: 188 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS-KETIAGLSVDI 246
           ++   L ++IS+L      +      L +++K L  +       E +  KE I  L  +I
Sbjct: 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-------EQLRVKEKIGELEAEI 303

Query: 247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAA 306
             L   + E E    +  +   +L+  +  L +++               ++   +IE  
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI---------------EELEREIEEE 348

Query: 307 GALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNM 366
               DKL  E  EL E++ DL  +L+        +     D    L      ++E    +
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 367 SSLNNRLE 374
             L   L+
Sbjct: 409 DRLQEELQ 416

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 30/164 (18%)

Query: 73  LAEAERQ-HLLQREAILE--ETVKHLRNE-------RESHIQK-EATLEGTVQQLQNECD 121
           L EA+++   +++EA+LE  E +  LRNE       R + +QK E  L    + L  + +
Sbjct: 44  LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

Query: 122 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 181
           L +++   LE+  ++L+++     +KE  LEE I++   +          LE  I+ L +
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE----------LE-RISGLTA 152

Query: 182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 225
           E+     KE  LE+   + R E+A L +K    EE  K  EADK
Sbjct: 153 EE----AKEILLEKVEEEARHEAAVL-IKEI--EEEAK-EEADK 188

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 52/260 (20%), Positives = 121/260 (46%), Gaps = 5/260 (1%)

Query: 75  EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 134
             ER+   + +A+L+E  ++   E    ++++  LE   + ++ +    +E++  L E I
Sbjct: 204 RREREKAERYQALLKEKREY---EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260

Query: 135 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE-GGLEMNIANLQSEKEFWLQKEAAL 193
            +L+++ +   Q    L + IK L  +  L ++ + G LE  IA+L+       ++    
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV 253
           E+++++L  E   L  +   LE  ++     +D  T+  +  KE +  L  ++ ++  + 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380

Query: 254 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL 313
            E  +   +  ++  +LK  ++ L+ +L     ++LQ  + E  D +  I    A I++L
Sbjct: 381 AETRDELKDYREKLEKLKREINELKRELDR-LQEELQRLSEELADLNAAIAGIEAKINEL 439

Query: 314 ITENIELVEKVNDLSVKLDR 333
             E  +   ++     KL++
Sbjct: 440 EEEKEDKALEIKKQEWKLEQ 459

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 57/285 (20%), Positives = 117/285 (41%), Gaps = 29/285 (10%)

Query: 72  NLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLE 131
                ER+ +L     LE+  K     +E   + +A +E    QL    +  ++ +  LE
Sbjct: 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE 209

Query: 132 ETIQQLQRQNDLRMQKEA----------------------TLEETIKQLRNQNDLHIQRE 169
           E +++L++  +++ ++E                        LEE   +L     L ++  
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEAL 269

Query: 170 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229
              E  +  L+   E   +K   LE+   ++ +    L   RA LEE  +LLE  K S  
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLK-SLE 328

Query: 230 QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN-RQLKENVSSLRSQLSSDESKK 288
           +     +E +  L  ++ +L     E +     LL+E  ++L+E +  L  +L     + 
Sbjct: 329 ERLEKLEEKLEKLESELEELA----EEKNELAKLLEERLKELEERLEELEKELEKALERL 384

Query: 289 LQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333
            Q   + Q+    ++    A ++++  E  EL +++ +L  +L+ 
Sbjct: 385 KQLEEAIQEL-KEELAELSAALEEIQEELEELEKELEELERELEE 428

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 9/207 (4%)

Query: 75   EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 134
            E E +   +R   LE  ++ L   RE   Q+   LE  +++L+ + D  +E++  LE+ +
Sbjct: 799  EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKEL 858

Query: 135  Q----QLQRQNDLRMQKE---ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 187
            +    +L+     + + E     LEE  ++L  +          L+  I  L+   E   
Sbjct: 859  EELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918

Query: 188  QKEAALEQKIS--QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 245
             K   LE ++   +   E    +     LE  ++ LE + ++   +   + E    +   
Sbjct: 919  AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978

Query: 246  ITQLRMQVVELEESRNNLLQENRQLKE 272
              +L+ Q  +LEE++  LL+   +L +
Sbjct: 979  YEELKSQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 78/316 (24%), Positives = 124/316 (39%), Gaps = 49/316 (15%)

Query: 55  NVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQ 114
               + D+      E    A+ E+  L QR   L++ V  L+ E+ S  Q+   L+  + 
Sbjct: 165 ESAGNLDQQLKKALEDLKEAQEEKDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLA 224

Query: 115 QLQNECDLYKEKVATLEETIQQL-QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 173
           QL+           +     Q   ++ N L+ Q E   EE  +    ++D  I+ E  LE
Sbjct: 225 QLEG----------SSLGPNQLGSKKYNLLQSQLEQLQEENFRLEAARDDYRIKCE-ELE 273

Query: 174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233
             +A LQ        +  +L  +   L+DE   L   R S  ++ K LEA      Q+E+
Sbjct: 274 KELAELQHR----NDELTSLAAESQALKDEIDVL---RES-SDKAKKLEA------QVET 319

Query: 234 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV---SSLRSQLS-------- 282
             K+       D+  LR QV  LEE     +Q   QL+E +   ++ R QL         
Sbjct: 320 YKKKL-----EDLNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQE 374

Query: 283 -----SDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL--SVKLDRQS 335
                S+ESKK      E K    ++EA     ++L+ E   L E   +L        Q 
Sbjct: 375 LHAKLSEESKKADKLEFEYKRLEEKLEALQKEKERLLAERDSLRETNEELRCGQAQQDQL 434

Query: 336 VAAGLSSAIGSDAVTA 351
             A   ++   D + A
Sbjct: 435 TQADAGTSPSGDNLAA 450

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 30/273 (10%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLL-QREAILEETVKHLRNERESHIQKEATL 109
            ++  ++++    + +  +       E + L  +   + EE ++ L  E     + E  L
Sbjct: 476 LELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKL 535

Query: 110 EGTVQQLQNECDLY--------KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 161
           E     L+   +L         KE++  LE+ +Q+L+   +         EE +++LR +
Sbjct: 536 EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEE-LEELRER 594

Query: 162 NDLHIQREGGLEMNIANLQSEKEF--WLQKEAALEQKISQLRDESAALNM---------- 209
                ++   LE  ++ L+   +     + E  LE+   +L  E   LN+          
Sbjct: 595 LKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQA 654

Query: 210 -------KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN 262
                  K   LE  ++      ++  Q+E   +E +  L  ++ QLR ++ EL +    
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEE-LEQLEEELEQLREELEELLKKLGE 713

Query: 263 LLQENRQLKENVSSLRSQLSSDESKKLQHATSE 295
           + Q   +L+   + L       E  +      E
Sbjct: 714 IEQLIEELESRKAELEELKKELEKLEKALELLE 746

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 44/245 (17%), Positives = 98/245 (40%), Gaps = 9/245 (3%)

Query: 71  ANLAEAERQHLLQREAILEETVKHL--RNERESHIQKEATLEGTVQQLQNECDLYKEKVA 128
             LA  E   L +    + E  K L    +    + K+    G  +QL+      KEK+ 
Sbjct: 244 RQLASLEE-ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR-----VKEKIG 297

Query: 129 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188
            LE  I  L+R    + ++    EE + +L  + D  +     LE  I   +  ++   +
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 189 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 248
           + A L++++  LR E   ++ + A   + LK      +   +  +  K  +  L  ++ +
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417

Query: 249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGA 308
           L  ++ +L  +   +  +  +L+E       ++   E  KL+   ++   +  ++     
Sbjct: 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE-WKLEQLAADLSKYEQELYDLKE 476

Query: 309 LIDKL 313
             D++
Sbjct: 477 EYDRV 481

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 40/275 (14%)

Query: 75  EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 134
           EAE +   ++   L + + HLRNE E   +   +LE   +      DL++E+        
Sbjct: 215 EAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG--DLFEER-------- 264

Query: 135 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 194
           +QL+RQ     + EA  +    QLR            L +    L S K    ++E + +
Sbjct: 265 EQLERQ---LKEIEAARKANRAQLREL----AADPLPLLLIPNLLDSTKAQLQKEEQSQQ 317

Query: 195 QKISQ-------------LRDESA---ALNMKRASLEERLKLLEADKDSWTQMESVSKET 238
            +++Q             L   +     +    A L E  K    D +       +S   
Sbjct: 318 NQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEI---PHRLSGSE 374

Query: 239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-DESKKLQHATSEQK 297
           +  L V I Q++    EL+++++ LL+E R+L+E ++ +  ++S+    +++     E  
Sbjct: 375 LTQLEVLIQQVKR---ELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELG 431

Query: 298 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 332
           +   ++  + A I++L+ +   L E +  L   LD
Sbjct: 432 EAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 5/201 (2%)

Query: 62  RHQSNGAESANLAEAERQHLLQREAILEETVKHLRN--ERESHIQKEATLEGTVQQLQNE 119
           R     +      +   + L + E +LEE  + +    E E  I++       ++ L  E
Sbjct: 257 RLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEE 316

Query: 120 CDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 179
            +   EK+ +LEE +++L+ + +    +   L E   +L     L  +R   LE  +  L
Sbjct: 317 LEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELA---KLLEERLKELEERLEEL 373

Query: 180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETI 239
           + E E  L++   LE+ I +L++E A L+     ++E L+ LE + +   +     +E I
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433

Query: 240 AGLSVDITQLRMQVVELEESR 260
             L   I QL  + + + E  
Sbjct: 434 KKLEEQINQLESKELMIAELA 454

Length = 908

>gnl|CDD|215915 pfam00429, TLV_coat, ENV polyprotein (coat polyprotein)

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 23/116 (19%)

Query: 114 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 173
             LQ+        +  LE +I  L+           +L E + Q R   DL    +GGL 
Sbjct: 426 TSLQHALI---SDIQALESSINDLEDSLT-------SLAEVVLQNRRGLDLLFLEQGGL- 474

Query: 174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229
              A LQ E  F+      +   I++L++           L +R +LL  ++  + 
Sbjct: 475 --CAALQEECCFYADHSGIVRDSIAKLQER----------LPQRQRLLTDNQLWFE 518

Length = 560

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 129 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188
           +  E + +LQ++     ++ A L+E + +L+ +N    Q    LE  +  LQ E    L 
Sbjct: 63  SARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE----LA 118

Query: 189 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227
           +   L     +L +E+  L  + A L++  + LEA+ + 
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENER 157

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 29/213 (13%)

Query: 125 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 184
             V+ +   I+QL+       +K   LEE  K+ ++ ++         E N    Q    
Sbjct: 164 GDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSA-----ERNALLAQ---- 214

Query: 185 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 244
                 A  +Q+I +L  +   L  K+   +  L+  +  +    +M+   K+ +  +++
Sbjct: 215 -----RAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTI 269

Query: 245 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIE 304
                  Q  + E  R +L  EN QL E++ +L+ +L S +    Q A    ++ ++   
Sbjct: 270 -------QRRDEETERIDLQLENEQLHEDLRTLQERLESSQ----QKAGLLGEELAS--- 315

Query: 305 AAGALIDKLITENIELVEKVNDLSVKLDRQSVA 337
             G+L D  I E  +   +   +S++L + ++A
Sbjct: 316 -LGSLRDHTIAELHQSRLESAQMSLQLSQLNLA 347

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG0964	1200	consensus Structural maintenance of chromosome pro	100.0
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.88
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.87
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.76
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.62
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.47
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.29
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.25
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.2
PF00038	312	Filament: Intermediate filament protein; InterPro:	99.17
KOG0018	1141	consensus Structural maintenance of chromosome pro	99.16
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.87
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.87
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.84
PF06470	120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	98.78
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.76
PRK04863	1486	mukB cell division protein MukB; Provisional	98.73
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.69
PRK04778	569	septation ring formation regulator EzrA; Provision	98.64
PRK02224	880	chromosome segregation protein; Provisional	98.6
PRK02224	880	chromosome segregation protein; Provisional	98.6
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.53
PRK11637	428	AmiB activator; Provisional	98.5
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.48
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.48
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	98.47
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.45
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.44
PRK11637	428	AmiB activator; Provisional	98.42
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.41
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.4
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.34
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.33
PHA02562	562	46 endonuclease subunit; Provisional	98.27
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.25
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.25
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.22
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.22
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.16
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.14
PRK03918	880	chromosome segregation protein; Provisional	98.12
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.12
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.11
PRK03918	880	chromosome segregation protein; Provisional	98.1
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.09
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.06
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.06
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.02
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.0
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.99
PRK04863	1486	mukB cell division protein MukB; Provisional	97.99
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.99
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.98
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.98
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.94
PRK01156	895	chromosome segregation protein; Provisional	97.93
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.92
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.9
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.9
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.88
KOG0979	1072	consensus Structural maintenance of chromosome pro	97.88
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.87
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.87
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.84
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.83
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.79
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.75
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.7
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.68
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.67
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.67
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.63
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.62
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.6
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.6
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.59
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.57
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.52
PRK04778	569	septation ring formation regulator EzrA; Provision	97.49
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.48
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.48
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.47
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.46
PRK09039	343	hypothetical protein; Validated	97.46
PRK09039	343	hypothetical protein; Validated	97.44
COG4372	499	Uncharacterized protein conserved in bacteria with	97.44
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.43
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.38
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	97.38
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.33
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.33
COG4372	499	Uncharacterized protein conserved in bacteria with	97.27
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	97.22
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.21
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.18
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.15
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.14
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.14
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.13
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.12
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.11
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.11
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.09
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.08
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.08
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	97.08
PRK11281	1113	hypothetical protein; Provisional	97.04
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.02
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.99
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.98
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.98
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.94
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.93
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.85
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.78
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.74
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	96.74
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.71
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.7
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.7
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.69
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.64
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.6
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.58
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.52
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.43
PRK10698	222	phage shock protein PspA; Provisional	96.4
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.39
PF13514	1111	AAA_27: AAA domain	96.35
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.32
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.3
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.3
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.27
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	96.25
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	96.21
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.19
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.19
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.18
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	96.11
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.11
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	96.1
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	96.06
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.03
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	95.98
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.98
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.97
PRK11281	1113	hypothetical protein; Provisional	95.95
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.93
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.9
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.87
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.87
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.86
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	95.79
COG3096	1480	MukB Uncharacterized protein involved in chromosom	95.76
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.68
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.66
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.64
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	95.54
PLN02939	977	transferase, transferring glycosyl groups	95.52
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	95.45
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.43
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	95.34
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.29
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.19
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.15
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.15
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.06
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.01
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.87
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.84
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	94.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.83
PLN02939	977	transferase, transferring glycosyl groups	94.79
PF13514	1111	AAA_27: AAA domain	94.73
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.62
KOG1937	521	consensus Uncharacterized conserved protein [Funct	94.61
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.55
KOG0249	916	consensus LAR-interacting protein and related prot	94.54
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.5
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.47
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.39
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.3
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.23
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	94.16
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.0
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	93.92
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.86
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.82
KOG2991	330	consensus Splicing regulator [RNA processing and m	93.81
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	93.79
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.77
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.72
COG4477	570	EzrA Negative regulator of septation ring formatio	93.64
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.59
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	93.44
PRK10884	206	SH3 domain-containing protein; Provisional	93.28
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.22
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.22
KOG0249	916	consensus LAR-interacting protein and related prot	93.19
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	92.88
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	92.84
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.78
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	92.75
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	92.75
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.71
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	92.69
KOG0288	459	consensus WD40 repeat protein TipD [General functi	92.6
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.52
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.51
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	92.44
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.43
COG2433	652	Uncharacterized conserved protein [Function unknow	92.39
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.16
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.0
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.63
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	91.55
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	91.53
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	91.49
PRK10246	1047	exonuclease subunit SbcC; Provisional	91.44
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	91.41
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	91.32
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	91.07
PRK10869	553	recombination and repair protein; Provisional	91.07
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	90.9
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	90.9
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.88
COG2433	652	Uncharacterized conserved protein [Function unknow	90.86
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	90.85
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	90.67
PLN03188	1320	kinesin-12 family protein; Provisional	90.66
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.58
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	90.56
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.48
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	90.23
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	90.12
COG3096	1480	MukB Uncharacterized protein involved in chromosom	90.01
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	90.0
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	89.96
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	89.87
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	89.75
PRK10246	1047	exonuclease subunit SbcC; Provisional	89.56
PF13166	712	AAA_13: AAA domain	89.5
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	89.49
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	89.43
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	89.37
KOG2196	254	consensus Nuclear porin [Nuclear structure]	89.37
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.23
PRK10884	206	SH3 domain-containing protein; Provisional	89.0
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.96
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	88.89
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.8
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	88.68
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	88.57
KOG1103	561	consensus Predicted coiled-coil protein [Function	88.55
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.51
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.5
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	88.48
PLN03188	1320	kinesin-12 family protein; Provisional	88.47
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	88.2
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	88.15
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	88.14
KOG0288	459	consensus WD40 repeat protein TipD [General functi	87.76
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.75
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	87.75
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	87.68
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.59
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	87.51
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.26
PRK11519	719	tyrosine kinase; Provisional	87.17
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	87.15
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.13
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	87.03
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	86.9
COG3206	458	GumC Uncharacterized protein involved in exopolysa	86.29
PRK10698	222	phage shock protein PspA; Provisional	86.27
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	85.98
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.73
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	85.64
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.09
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	84.95
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	84.84
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	84.78
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	84.76
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	84.73
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	84.58
PF03999	619	MAP65_ASE1: Microtubule associated protein (MAP65/	84.34
KOG1962	216	consensus B-cell receptor-associated protein and r	84.24
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	84.15
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	83.69
PRK11519	719	tyrosine kinase; Provisional	83.67
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	83.65
COG5283	1213	Phage-related tail protein [Function unknown]	83.22
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	83.0
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	82.7
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.7
PRK04406	75	hypothetical protein; Provisional	82.24
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	82.12
COG4717	984	Uncharacterized conserved protein [Function unknow	82.11
KOG4807	593	consensus F-actin binding protein, regulates actin	82.04
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.93
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	81.79
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	81.44
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	81.41
TIGR02231	525	conserved hypothetical protein. This family consis	81.39
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	81.39
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	81.33
PRK03947	140	prefoldin subunit alpha; Reviewed	81.14
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	81.11
PRK03947	140	prefoldin subunit alpha; Reviewed	81.05
PF15294	278	Leu_zip: Leucine zipper	81.03
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	80.29
PF13166	712	AAA_13: AAA domain	80.23

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.9e-46  Score=400.76  Aligned_cols=321  Identities=18%  Similarity=0.257  Sum_probs=298.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  160 (473)
Q Consensus        81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~  160 (473)
                      +.-.-..+..++.|++.+.....++...|++++++|+.++....+........+..+...|...+.++..+.+.+..+..
T Consensus       277 le~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~  356 (1200)
T KOG0964|consen  277 LENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD  356 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            33344446678888888888888999999999999999999999999999999999999999999998888888777666


Q ss_pred             HHHHHHHHhhchHHHHH----------HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          161 QNDLHIQREGGLEMNIA----------NL--QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  227 (473)
Q Consensus       161 ei~~L~~kl~~le~rl~----------~L--K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~  227 (473)
                      +...+...+..++.+..          +|  |.+||.|+++++ .+..-|.........++.++.+++.++.+..++|..
T Consensus       357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~  436 (1200)
T KOG0964|consen  357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKE  436 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666665555444          44  999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhh
Q 011982          228 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAG  307 (473)
Q Consensus       228 L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~  307 (473)
                      +...+++.+.+|..+.+.+..++..++++.+.|+.||||+++|+..+.++..+|..++..|..|       |.       
T Consensus       437 l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~-------~~-------  502 (1200)
T KOG0964|consen  437 LESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT-------MN-------  502 (1200)
T ss_pred             HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999       99       


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc
Q 011982          308 ALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG  387 (473)
Q Consensus       308 ~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns  387 (473)
                                                +++++||.+|+.|+..+++.||||||+|||.   | +++|+||||   |+||||
T Consensus       503 --------------------------r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~---v-~~~f~tavE---vtaGNs  549 (1200)
T KOG0964|consen  503 --------------------------RSVANGIDSVRKIKEELKPNGVFGTVYELIK---V-PNKFKTAVE---VTAGNS  549 (1200)
T ss_pred             --------------------------chhhhhhHHHHHHHHHhcccccceehhhhhc---C-CHHHHhHHh---hhcccc
Confidence                                      9999999999999999999999999999999   9 999999999   999999


Q ss_pred             --ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhccccccCCCCcccccCCc----cccCcchhHH
Q 011982          388 --INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA----PLIGAPFRLV  454 (473)
Q Consensus       388 --~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~~p~~~~~~~~~vPl~~~----~~~~~~f~~~  454 (473)
                        |+|| ||++||+||..++++++||||||||||+.++++  .||.    .+|++|||++    |.|.+||+-|
T Consensus       550 LF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v--~yp~----~sdaiPli~kl~y~p~fdka~k~V  617 (1200)
T KOG0964|consen  550 LFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDV--EYPK----DSDAIPLISKLRYEPQFDKALKHV  617 (1200)
T ss_pred             eEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhc--cCCC----CCCccchHHHhCcchhhHHHHHHH
Confidence              9999 999999999999999999999999999999999  9999    7999999999    9999998855

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.88  E-value=2.1e-19  Score=209.34  Aligned_cols=64  Identities=11%  Similarity=0.055  Sum_probs=59.3

Q ss_pred             CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCc
Q 011982          351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEV  421 (473)
Q Consensus       351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~  421 (473)
                      .++|+||+|++|+.   | +++|.+|++   ++.|+.  +||| ++++|..++.++...+.||+||||||.+.+
T Consensus       519 ~~~g~~g~l~dli~---v-~~~y~~Aie---~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~  585 (1164)
T TIGR02169       519 SIQGVHGTVAQLGS---V-GERYATAIE---VAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRD  585 (1164)
T ss_pred             CCCCceecHHHhcC---c-CHHHHHHHH---HHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCC
Confidence            36899999999999   8 899999999   999988  8888 999999999999988999999999998874

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.87  E-value=3.4e-19  Score=208.76  Aligned_cols=138  Identities=14%  Similarity=0.146  Sum_probs=99.0

Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCcccccccccccc
Q 011982          299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGV  378 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e  378 (473)
                      +...+..+...+..+..+.+.+..+.+.|......   .+|..++....... ++||||||++|+.   | +.+|.+|++
T Consensus       465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~-~~Gv~G~v~~li~---v-~~~y~~Aie  536 (1163)
T COG1196         465 LERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESG-LPGVYGPVAELIK---V-KEKYETALE  536 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhcc-CCCccchHHHhcC---c-ChHHHHHHH
Confidence            34444444444455555555555555555554444   55666665554444 9999999999999   8 789999999


Q ss_pred             ccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhccccccCCCCccccc----CCc-cccCcc
Q 011982          379 VAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPL----TDA-PLIGAP  450 (473)
Q Consensus       379 ~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~~p~~~~~~~~~vPl----~~~-~~~~~~  450 (473)
                         ++.|++  |||| ++.+|...+.+|...++||+||||||++.+...  .+|.+   .++.+|+    ++. |.|.++
T Consensus       537 ---~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~--~~~~~---~~g~~~~a~dli~~d~~~~~~  608 (1163)
T COG1196         537 ---AALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRS--LKSDA---APGFLGLASDLIDFDPKYEPA  608 (1163)
T ss_pred             ---HHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccc--ccccc---ccchhHHHHHHhcCCHHHHHH
Confidence               999999  9999 999999999999999999999999999997776  33331   3555653    333 556665


Q ss_pred             hh
Q 011982          451 FR  452 (473)
Q Consensus       451 f~  452 (473)
                      |.
T Consensus       609 ~~  610 (1163)
T COG1196         609 VR  610 (1163)
T ss_pred             HH
Confidence            54

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=6.6e-16  Score=172.54  Aligned_cols=107  Identities=12%  Similarity=0.072  Sum_probs=85.5

Q ss_pred             hhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCc
Q 011982          334 QSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGE  410 (473)
Q Consensus       334 ~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gr  410 (473)
                      ++-..=|.|+.+......|+|+||-|+||-.   + +.+|.+|.=    ||+..  ++|| |-++|..-+++|-+-+.||
T Consensus       597 ~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~---I-d~kYDvAIs----Tac~~LdyiVVdt~e~aq~cI~fl~~~nLgr  668 (1293)
T KOG0996|consen  597 RSRNKVLDALMRLKESGRIPGFYGRLGDLGA---I-DEKYDVAIS----TACARLDYIVVDTIETAQECINFLKKNNLGR  668 (1293)
T ss_pred             hhhhHHHHHHHHHHHcCCCCccccccccccc---c-chHHHHHHH----HhccccceEEeccHHHHHHHHHHHHHcCCCc
Confidence            4455567888887777779999999999998   7 999999887    47777  8888 9999999999999999999


Q ss_pred             eeeecCCCCCcchhhhccccccCCCCcccc-cCCc-----cccCcchh
Q 011982          411 IVQIPLDDKEVQDLELQVVESYTDKVAAVP-LTDA-----PLIGAPFR  452 (473)
Q Consensus       411 itf~PLn~~~~~~~~~~~p~~~~~~~~~vP-l~~~-----~~~~~~f~  452 (473)
                      -||||||+|..+.-.+.++.    ...-|| |+|.     |.|.+||=
T Consensus       669 aTFi~LDki~~~~~~l~~i~----tpenvPRLfDLv~~~d~~~r~aFY  712 (1293)
T KOG0996|consen  669 ATFIILDKIKDHQKKLAPIT----TPENVPRLFDLVKCKDEKFRPAFY  712 (1293)
T ss_pred             eeEEehHhhhhhhhccCCCC----CCCCcchHhhhhccCCHHHHHHHH
Confidence            99999999996655444444    344455 4444     77777774

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.62  E-value=1e-12  Score=153.11  Aligned_cols=66  Identities=14%  Similarity=0.093  Sum_probs=52.7

Q ss_pred             CccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchh
Q 011982          352 LTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDL  424 (473)
Q Consensus       352 l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~  424 (473)
                      +.|++|++.+++.   | +++|..+++   ...|+.  ++|| +..+|...+..+.....|+++|+||+.+..+.+
T Consensus       518 ~~~~~g~~~~li~---~-~~~~~~a~~---~~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~  586 (1179)
T TIGR02168       518 LSGILGVLSELIS---V-DEGYEAAIE---AALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI  586 (1179)
T ss_pred             cCCCccchhceee---e-ChhHHHHHH---HHHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccc
Confidence            4678999999998   6 789999998   555555  4777 777777767777777899999999999976544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=8.2e-12  Score=138.39  Aligned_cols=60  Identities=13%  Similarity=0.032  Sum_probs=53.2

Q ss_pred             ccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhc--ccccccCCceeeecCCCCCcchh
Q 011982          355 DTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLS--SSEAEYSGEIVQIPLDDKEVQDL  424 (473)
Q Consensus       355 v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~--~~~~~~~gritf~PLn~~~~~~~  424 (473)
                      |+|.++.||.   |-+..|-||++   ++||+.  .||| ++.|+..|++  .+.+    |||.||||.|....+
T Consensus       521 V~G~Va~Li~---vkd~~~~tAle---~~aGgrLynvVv~te~tgkqLLq~g~l~r----RvTiIPLnKI~s~~~  585 (1174)
T KOG0933|consen  521 VKGLVAKLIK---VKDRSYATALE---TTAGGRLYNVVVDTEDTGKQLLQRGNLRR----RVTIIPLNKIQSFVL  585 (1174)
T ss_pred             HHHHHHHHhe---eCcchHHHHHH---HHhcCcceeEEeechHHHHHHhhcccccc----eeEEEechhhhhccC
Confidence            7999999999   85677999999   999999  8889 8999999987  5655    799999999998777

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.29  E-value=1.5e-08  Score=119.70  Aligned_cols=167  Identities=28%  Similarity=0.302  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH
Q 011982          172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  251 (473)
Q Consensus       172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~  251 (473)
                      ++.++..+..++..|......+...|..+...+..+...+..+...+..++..+..+..++..+...+..+...+..++.
T Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~  884 (1163)
T COG1196         805 AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE  884 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555444444444444444444444444444444444444444444443333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------h---------------hchhchHHHHHHhhhh
Q 011982          252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA-------T---------------SEQKDFSTQIEAAGAL  309 (473)
Q Consensus       252 q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae-------~---------------~~~~dMe~ql~~~~~~  309 (473)
                      ++..+..+...+..+..++...++.+...+..++..+...+       .               ..+..|+.+|.++|++
T Consensus       885 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~V  964 (1163)
T COG1196         885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPV  964 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCC
Confidence            33333333333333333333333333333322222221111       0               1678899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 011982          310 IDKLITENIELVEKVNDLSVKLDRQSVAA  338 (473)
Q Consensus       310 ~~~l~~Ey~~L~~k~neL~~~~~~~~~~~  338 (473)
                      +..+++||.++.+||++|..+..|+..++
T Consensus       965 N~~Aiee~e~~~~r~~~l~~~~~dl~~a~  993 (1163)
T COG1196         965 NLRAIEEYEEVEERYEELKSQREDLEEAK  993 (1163)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987664

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.25  E-value=3.4e-08  Score=115.75  Aligned_cols=44  Identities=18%  Similarity=0.198  Sum_probs=39.1

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAA  338 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~  338 (473)
                      ++..+..+|..+|+++..++.+|.++.++|.+|..|++|...+.
T Consensus       959 ~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~ 1002 (1164)
T TIGR02169       959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002 (1164)
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999999999999999886553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.20  E-value=5.5e-08  Score=113.72  Aligned_cols=39  Identities=13%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHH----HhhhhhhhhhhhhhHH
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELV----EKVNDLSVKLDRQSVA  337 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~----~k~neL~~~~~~~~~~  337 (473)
                      .+..+..+|+.+|+    +++||.++.    ++|.||..|++|+..+
T Consensus       966 ~~~~l~~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~ 1008 (1179)
T TIGR02168       966 DEEEARRRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQ 1008 (1179)
T ss_pred             CHHHHHHHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888888    778888877    8999999999998766

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=99.17  E-value=4.9e-08  Score=99.10  Aligned_cols=209  Identities=23%  Similarity=0.320  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-------HHHHHhhchHHH
Q 011982          111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK--------EATLEETIKQLRNQND-------LHIQREGGLEMN  175 (473)
Q Consensus       111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk--------e~~le~eLeeLe~ei~-------~L~~kl~~le~r  175 (473)
                      ..+..|++++..+..++..|+.+...|..+|..+...        ...+..+|..++..++       .+..+.+.+...
T Consensus         4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e   83 (312)
T PF00038_consen    4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE   83 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence            4678899999999999999999999999999988776        2234455555555544       444456666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH---------
Q 011982          176 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI---------  246 (473)
Q Consensus       176 l~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~---------  246 (473)
                      +..|+..++.+......++..+..++..++........++..+..|..+|.++..   .|.+.+..+...+         
T Consensus        84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~---~heeEi~~L~~~~~~~~~~e~~  160 (312)
T PF00038_consen   84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ---NHEEEIEELREQIQSSVTVEVD  160 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTSTT----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceeec
Confidence            7777888888888888999999999999999999999999999999999998766   3333333333222         


Q ss_pred             -----------HHHHHHHH-------------------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011982          247 -----------TQLRMQVV-------------------ELE-------ESRNNLLQENRQLKENVSSLRSQLSSDESK--  287 (473)
Q Consensus       247 -----------~~Lk~q~~-------------------eL~-------deRK~LwrEe~kL~~~i~~L~~eL~~ae~~--  287 (473)
                                 .+++.++.                   .+.       .....+..|...++..+++|..++..+...  
T Consensus       161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~  240 (312)
T PF00038_consen  161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA  240 (312)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence                       11222221                   111       222234444445555555555555544444  


Q ss_pred             -----HHhhhh----------hchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          288 -----KLQHAT----------SEQKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       288 -----l~~ae~----------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                           +..++.          ..+..++.+|..++..+..+..||++|++
T Consensus       241 ~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~  290 (312)
T PF00038_consen  241 SLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD  290 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence                 333321          17999999999999999999999999997

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=1e-08  Score=115.20  Aligned_cols=89  Identities=10%  Similarity=0.027  Sum_probs=69.4

Q ss_pred             CccccccccccccCCcccc-ccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhc
Q 011982          352 LTSDTEPMSESSDNMSSLN-NRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQ  427 (473)
Q Consensus       352 l~~v~g~l~el~~~~~v~~-~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~  427 (473)
                      .+||||-|+||+.|    + .+|+.|+-   +.-|--  .|+| +..||.--+.++-.--.|--||+|||.|.+.++...
T Consensus       501 fPgv~GrviDLc~p----t~kkyeiAvt---~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~  573 (1141)
T KOG0018|consen  501 FPGVYGRVIDLCQP----TQKKYEIAVT---VVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEK  573 (1141)
T ss_pred             CCCccchhhhcccc----cHHHHHHHHH---HHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCccccc
Confidence            59999999999996    5 78999887   554444  8888 899999999998877789999999999998887656


Q ss_pred             cccccCCCCcccccCCc----cccCcch
Q 011982          428 VVESYTDKVAAVPLTDA----PLIGAPF  451 (473)
Q Consensus       428 ~p~~~~~~~~~vPl~~~----~~~~~~f  451 (473)
                      .|.    -.++.-.+|.    |.|.+|+
T Consensus       574 lr~----~~g~rlv~Dvi~ye~e~eka~  597 (1141)
T KOG0018|consen  574 LRE----LGGVRLVIDVINYEPEYEKAV  597 (1141)
T ss_pred             ccC----cCCeEEEEEecCCCHHHHHHH
Confidence            665    3445555666    5555544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.87  E-value=1.3e-05  Score=96.91  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=36.8

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAA  338 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~  338 (473)
                      .+.++..|++...-+-..+..++..|...+.+|+.++.++..++
T Consensus      1190 ~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k 1233 (1930)
T KOG0161|consen 1190 SLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEK 1233 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            68888889999999999999999999998888888887665443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.87  E-value=1.8e-05  Score=90.25  Aligned_cols=230  Identities=15%  Similarity=0.132  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          148 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  227 (473)
Q Consensus       148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~  227 (473)
                      ....+.++..+...++..+.++++++.++..+++.-......-..-..+|...+..++.+..+...++.++......|..
T Consensus       290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~  369 (1074)
T KOG0250|consen  290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK  369 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555556666666666666665555555555555444444566677778888888888888888888888888888


Q ss_pred             HHHHhHhHHHHHhchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hchhchH
Q 011982          228 WTQMESVSKETIAGLSVDI-TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT------SEQKDFS  300 (473)
Q Consensus       228 L~~ei~~~~e~L~~l~~e~-~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~------~~~~dMe  300 (473)
                      ++.....+...|..++.+. +.+..++.+..++++.|..+..+|...+.+|..+++.....+..-+.      +.+-++.
T Consensus       370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~  449 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR  449 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            8888888888888888775 88888899999999999999999999999998888888777754421      1333334


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhh---hhhhhhhhcccCC--ccccccccccccCCccccccccc
Q 011982          301 TQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG---LSSAIGSDAVTAL--TSDTEPMSESSDNMSSLNNRLET  375 (473)
Q Consensus       301 ~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~G---l~s~~~~~~~~~l--~~v~g~l~el~~~~~v~~~~~~t  375 (473)
                      .+|+.....+..+              ..=++|.-.+=|   .+.+..|.+.+.-  +..-|||+-.+.   +.+.+|-.
T Consensus       450 k~i~~~~~~l~~l--------------k~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vt---l~~~KWa~  512 (1074)
T KOG0250|consen  450 KKIENISEELKDL--------------KKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVT---LKEPKWAL  512 (1074)
T ss_pred             HHHHHHHHHHHHH--------------HhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeE---ecCcHHHH
Confidence            3333333322222              222222222333   2333444444432  566899999999   65889999


Q ss_pred             cccccccccCCc--ceee-cCCCch
Q 011982          376 QGVVAVKEDRNG--INGV-HADPPP  397 (473)
Q Consensus       376 ~~e~~~~~agns--~vvv-~d~~a~  397 (473)
                      ++|   -.-||.  ..+| +..-+.
T Consensus       513 aIE---~~L~n~lnaFiv~sh~D~~  534 (1074)
T KOG0250|consen  513 AIE---RCLGNLLNAFIVTSHKDAR  534 (1074)
T ss_pred             HHH---HHHHHhhhhheeCCHhhHH
Confidence            999   777888  5555 433333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.84  E-value=0.00013  Score=79.05  Aligned_cols=43  Identities=23%  Similarity=0.360  Sum_probs=36.5

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA  337 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~  337 (473)
                      ++.+|...+.-++-.-+.+..|.++|+.-+--|...++..+.+
T Consensus       418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~  460 (546)
T PF07888_consen  418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE  460 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            7888888888888899999999999999888888877776443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins

Probab=98.78  E-value=7.2e-10  Score=96.47  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             ccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhccc
Q 011982          353 TSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVV  429 (473)
Q Consensus       353 ~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~~p  429 (473)
                      .||||+|++++.   | +++|++|+|   +.-|+.  +||| +..+|..+++.+...+.||+|||||+.+.........+
T Consensus         2 ~gv~G~l~dli~---v-~~~~~~Ave---~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~   74 (120)
T PF06470_consen    2 PGVLGRLADLIE---V-DPKYEKAVE---AALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSAD   74 (120)
T ss_dssp             TTEEEEGGGSEE---E-SGGGHHHHH---HHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCG
T ss_pred             CCeeeeHHhcee---c-CHHHHHHHH---HHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchh
Confidence            588999999999   8 999999999   888888  8888 88999999999998899999999999999887631221


Q ss_pred             cccCCCCcccccCCc
Q 011982          430 ESYTDKVAAVPLTDA  444 (473)
Q Consensus       430 ~~~~~~~~~vPl~~~  444 (473)
                      .. .....+.||+|.
T Consensus        75 ~~-~~~~~~~~l~d~   88 (120)
T PF06470_consen   75 QI-RPPGGAGPLIDL   88 (120)
T ss_dssp             GH-HSTTSEEEGGGG
T ss_pred             hc-cCCcchHHHHHh
Confidence            10 012467888766

The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=1e-05  Score=90.73  Aligned_cols=211  Identities=17%  Similarity=0.184  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 011982           81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET------  154 (473)
Q Consensus        81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e------  154 (473)
                      +.+.-.....++..+..++..+...+..+.....++..+.....+++..++-.++.|+.+|....+........      
T Consensus       256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~  335 (1200)
T KOG0964|consen  256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD  335 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence            33334456777888888888888888888888899999999999999999999999999999887764433333      


Q ss_pred             --------HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 011982          155 --------IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-------------ALEQKISQLRDESAALNMKRAS  213 (473)
Q Consensus       155 --------LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-------------~Le~~I~~l~~el~~L~~ei~~  213 (473)
                              |..+.-....+..+...+..|+..++..+..++.++-             =+...|..+...+.+.......
T Consensus       336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~  415 (1200)
T KOG0964|consen  336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI  415 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence                    3344444444444455556666666555555554331             3567788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ++.++..++.++.....++..+...+.+...++.++-..+..+..++.++.+.++.||++...|++.+.+.+..|+++
T Consensus       416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~  493 (1200)
T KOG0964|consen  416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA  493 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999988888888889999999999999999999999999999999999999999999999999999999988

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.73  E-value=5.3e-05  Score=91.13  Aligned_cols=164  Identities=17%  Similarity=0.115  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhh-h-----chhchHHHHHHhhhhHHH
Q 011982          242 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS---QLSSDESKKLQHAT-S-----EQKDFSTQIEAAGALIDK  312 (473)
Q Consensus       242 l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~---eL~~ae~~l~~ae~-~-----~~~dMe~ql~~~~~~~~~  312 (473)
                      .+..+.++..+..++.+.|..+..+..+|...++.|..   .+..+...+..... +     --..+...++..+...-.
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~  642 (1486)
T PRK04863        563 LEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERE  642 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHH
Confidence            33444555555555556666666666666666555543   34444444433310 0     111122344455556666


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc--cee
Q 011982          313 LITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--ING  390 (473)
Q Consensus       313 l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vv  390 (473)
                      +..+...+..+...|..++..+....|=.-.+-......++||+  |+|+|+.  | ...|.-+++   +.-|.+  ++|
T Consensus       643 ~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~~~~~~Gvl--vsel~~~--v-~~~~~~~~~---A~lg~~~~~iV  714 (1486)
T PRK04863        643 LTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVL--LSEIYDD--V-SLEDAPYFS---ALYGPARHAIV  714 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHHHHhcCCee--hhHhhhc--c-CcchHHHHH---HHHHhhhCeEE
Confidence            77788888888888888888877755543221111124578888  9999984  3 555665555   444555  788


Q ss_pred             e-cCCCchhhhcccccccCCceeee
Q 011982          391 V-HADPPPLVLSSSEAEYSGEIVQI  414 (473)
Q Consensus       391 v-~d~~a~~~~~~~~~~~~gritf~  414 (473)
                      | +.+.|..-+++|+. -++-|.+|
T Consensus       715 v~d~~~A~~ai~~L~~-~p~d~~li  738 (1486)
T PRK04863        715 VPDLSDAAEQLAGLED-CPEDLYLI  738 (1486)
T ss_pred             eCCHHHHHHHHHhccC-Cccceeee
Confidence            8 78888888899987 56677777

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.69  E-value=0.00011  Score=89.18  Aligned_cols=97  Identities=19%  Similarity=0.255  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      .+..++...+..+..+...+..+...+...+.++..+...+++....++.+...+.+|..++.+|.++.......+.++.
T Consensus      1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555544444444444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          272 ENVSSLRSQLSSDESKK  288 (473)
Q Consensus       272 ~~i~~L~~eL~~ae~~l  288 (473)
                      +....|..++..+...+
T Consensus      1125 k~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1125 RQRRDLSEELEELKEEL 1141 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444444

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.64  E-value=5.8e-05  Score=83.28  Aligned_cols=149  Identities=15%  Similarity=0.201  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHhHHHH-------HhchHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEER----------LKLLEADKDSWTQMESVSKET-------IAGLSVDITQLRMQVV  254 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leee----------ie~Le~EI~~L~~ei~~~~e~-------L~~l~~e~~~Lk~q~~  254 (473)
                      .+...+...+.....+..++..+...          +..+..++..+..........       .+.+...+..+..+++
T Consensus       314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le  393 (569)
T PRK04778        314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE  393 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555          445555555555544444433       4444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------hchhchHHHHHHhhhhHHH
Q 011982          255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT----------------------SEQKDFSTQIEAAGALIDK  312 (473)
Q Consensus       255 eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~----------------------~~~~dMe~ql~~~~~~~~~  312 (473)
                      .+..++..++.....|+.....++..+......+.....                      ..+..+..+|.+ |+++-.
T Consensus       394 eie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~  472 (569)
T PRK04778        394 EIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINME  472 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHH
Confidence            555666666666666666655555555555555543321                      188999999999 999999


Q ss_pred             HHH-HHHHHHHhhhhhhhhhhhhhHHhhhh
Q 011982          313 LIT-ENIELVEKVNDLSVKLDRQSVAAGLS  341 (473)
Q Consensus       313 l~~-Ey~~L~~k~neL~~~~~~~~~~~Gl~  341 (473)
                      ++. +|.+...++++|..|.+|+-.+..+.
T Consensus       473 ai~~e~~e~~~~~~~L~~q~~dL~~~a~~l  502 (569)
T PRK04778        473 AVNRLLEEATEDVETLEEETEELVENATLT  502 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 99999999999999999998887663

>PRK02224 chromosome segregation protein; Provisional

Probab=98.60  E-value=0.00021  Score=82.45  Aligned_cols=97  Identities=20%  Similarity=0.284  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      .+...+..++.....+..++..+...+..++.++..+..++..+...+......+..+...+..+++++..++.+...++
T Consensus       353 ~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~  432 (880)
T PRK02224        353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE  432 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555566666666655555555555445556666777777788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          272 ENVSSLRSQLSSDESKK  288 (473)
Q Consensus       272 ~~i~~L~~eL~~ae~~l  288 (473)
                      ..+..+...+..++..+
T Consensus       433 ~~~~~~~~~l~~~~~~l  449 (880)
T PRK02224        433 ATLRTARERVEEAEALL  449 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888887777776544

>PRK02224 chromosome segregation protein; Provisional

Probab=98.60  E-value=0.00018  Score=83.08  Aligned_cols=46  Identities=26%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           94 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR  139 (473)
Q Consensus        94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~  139 (473)
                      .++.++..+..++..++..+..+..++.........++.++..|..
T Consensus       255 ~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~  300 (880)
T PRK02224        255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA  300 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444455554444444444444444433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.53  E-value=0.00012  Score=72.13  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK-------EATLEETIKQLRN  160 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk-------e~~le~eLeeLe~  160 (473)
                      ++.++..++.....+...+...+.....+..++.++.+++..++..+......+.....+       .......+..++.
T Consensus         6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~   85 (237)
T PF00261_consen    6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN   85 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333333333333333444444444444444433333333333333333       3333333333333


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982          161 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES  233 (473)
Q Consensus       161 ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~  233 (473)
                      .......++..++.++...+...+.--++...+...+..+...+.........++..+..|+.+|..+...+.
T Consensus        86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk  158 (237)
T PF00261_consen   86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK  158 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence            3333333344444444433333333333333444444444444444444444444444444444444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK11637 AmiB activator; Provisional

Probab=98.50  E-value=0.00032  Score=74.73  Aligned_cols=78  Identities=21%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS  282 (473)
Q Consensus       205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~  282 (473)
                      ..+......+......++.+...+...+.........|.....+.+..+..|..+++....+..+|......|...|.
T Consensus       173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~  250 (428)
T PRK11637        173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA  250 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444443333333333333333333333344444444333344444444444444333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.48  E-value=0.00044  Score=68.06  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  274 (473)
Q Consensus       195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i  274 (473)
                      ..+.........+...+..|+.++..+...+..|.............+...+..|..++..........-+....|.+.+
T Consensus       127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i  206 (237)
T PF00261_consen  127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI  206 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444444444444333333333333333333333333333333333333333344444444


Q ss_pred             HHHHHHHHHH
Q 011982          275 SSLRSQLSSD  284 (473)
Q Consensus       275 ~~L~~eL~~a  284 (473)
                      +.|..+|...
T Consensus       207 d~le~eL~~~  216 (237)
T PF00261_consen  207 DRLEDELEKE  216 (237)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR00606 rad50 rad50

Probab=98.48  E-value=0.00036  Score=83.99  Aligned_cols=43  Identities=19%  Similarity=0.110  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHH
Q 011982          212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV  254 (473)
Q Consensus       212 ~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~  254 (473)
                      ..++.++..+..++..+...+......+..+...+..++..+.
T Consensus       884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  926 (1311)
T TIGR00606       884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE  926 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444433333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=98.47  E-value=0.0023  Score=64.31  Aligned_cols=256  Identities=17%  Similarity=0.204  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           77 ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK  156 (473)
Q Consensus        77 ~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe  156 (473)
                      -+-....+|...-.+|.-+......+.+.+.   +.-..|...+..+.+++..|..+...|..++..-.+..+.++.+++
T Consensus        18 ik~q~qekE~ky~ediei~Kekn~~Lqk~lK---LneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiE   94 (305)
T PF14915_consen   18 IKNQNQEKEKKYLEDIEILKEKNDDLQKSLK---LNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIE   94 (305)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Confidence            3444455566666666666666655554433   3334456677778888888888888888888877777777777777


Q ss_pred             HHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          157 QLRNQNDLHIQREGG----LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       157 eLe~ei~~L~~kl~~----le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      .++..+.........    -+..--.|+.+||.|+.-.-.+.-+++.++.....|.+.+...+..+..|+.++-..+..+
T Consensus        95 S~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaL  174 (305)
T PF14915_consen   95 SYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDAL  174 (305)
T ss_pred             HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666555555333    2223335699999999999999999999999999999999999999999999998887766


Q ss_pred             HhHHHHHhchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------chhch
Q 011982          233 SVSKETIAGLSVDITQLRMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS------EQKDF  299 (473)
Q Consensus       233 ~~~~e~L~~l~~e~~~Lk~q~~eL~d-------eRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~------~~~dM  299 (473)
                      ..-.--+...+..+.+.+.++.++..       ....-......+...+..|+++---+..+|..|-..      .+-+.
T Consensus       175 rEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini  254 (305)
T PF14915_consen  175 REKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI  254 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            54444455555556555555555552       222222233333333333333333333333333110      11111


Q ss_pred             HHHH----HHhhhh----HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982          300 STQI----EAAGAL----IDKLITENIELVEKVNDLSVKLDRQS  335 (473)
Q Consensus       300 e~ql----~~~~~~----~~~l~~Ey~~L~~k~neL~~~~~~~~  335 (473)
                      ..+.    ..+.+.    ...+.+-|.+|++++|.|..++-+..
T Consensus       255 Q~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyE  298 (305)
T PF14915_consen  255 QDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYE  298 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            2112    111222    33367778888888888888766554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.45  E-value=0.0017  Score=66.03  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982          180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS  243 (473)
Q Consensus       180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~  243 (473)
                      +.+-+.|.+..+ .+..........+..+..++..+...+..++.++..+......++..|..++
T Consensus       186 ~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le  250 (312)
T PF00038_consen  186 REELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE  250 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence            677777777776 6666666666666666666666666666666666666555555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.44  E-value=0.0023  Score=69.59  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          256 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       256 L~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      |.+.+...|+|+..|.......+..+.++...+..+
T Consensus       348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~  383 (546)
T PF07888_consen  348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQML  383 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            334445566666666554444444555555444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=98.42  E-value=0.00038  Score=74.16  Aligned_cols=65  Identities=11%  Similarity=0.099  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  277 (473)
Q Consensus       213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L  277 (473)
                      .++.....+...+..+..+...+..........+..|..++.....+...|.++...|...+..+
T Consensus       188 ~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l  252 (428)
T PRK11637        188 ELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA  252 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333344444444444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.41  E-value=0.0029  Score=71.16  Aligned_cols=152  Identities=19%  Similarity=0.225  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Q 011982          105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDL---------------------RMQKEATLEETIKQLRNQND  163 (473)
Q Consensus       105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~---------------------~eqke~~le~eLeeLe~ei~  163 (473)
                      .+..+.....++.+-.....++.+.|+.+|..-+.+...                     ..-..+..+++-+.|+.++.
T Consensus       256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve  335 (1243)
T KOG0971|consen  256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE  335 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            333444455555555555555555555555544433333                     22223344555667888888


Q ss_pred             HHHHHhhchHHHHHHHHHHHHH------------HHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          164 LHIQREGGLEMNIANLQSEKEF------------WLQKE--A-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  228 (473)
Q Consensus       164 ~L~~kl~~le~rl~~LK~ERD~------------wLqkE--i-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L  228 (473)
                      .++.+..+++..+..||+|-..            +.+-|  . .|...+-.++.-...-+.....+..+.+.+..|+..|
T Consensus       336 ~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL  415 (1243)
T KOG0971|consen  336 ALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEEL  415 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8888888888888888666542            22222  2 7888888888888888888888888888888888888


Q ss_pred             HHHhHhHHHHHhchHHHHHHHHHHHHHH
Q 011982          229 TQMESVSKETIAGLSVDITQLRMQVVEL  256 (473)
Q Consensus       229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL  256 (473)
                      +...+.+..++..++..+.++++|++..
T Consensus       416 ~r~kE~Lsr~~d~aEs~iadlkEQVDAA  443 (1243)
T KOG0971|consen  416 RRQKERLSRELDQAESTIADLKEQVDAA  443 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888887777643

>TIGR00606 rad50 rad50

Probab=98.40  E-value=0.0012  Score=79.56  Aligned_cols=39  Identities=13%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  335 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~  335 (473)
                      ++..|+.||.++...+..  .+|....+||..-.+++....
T Consensus      1076 ~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~ 1114 (1311)
T TIGR00606      1076 RQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTE 1114 (1311)
T ss_pred             HHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHH
Confidence            777888888888888855  799999999988888776543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.34  E-value=0.00054  Score=74.27  Aligned_cols=244  Identities=19%  Similarity=0.225  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV--------ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  161 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~--------~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~e  161 (473)
                      .+|.+|.+.+...+.+..+||-+-..|..++..+....        ...+.++..++..++.......+++..|..|..+
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e  121 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE  121 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44555555555666666666666555555555554443        3446677777777777777777777788888888


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc
Q 011982          162 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG  241 (473)
Q Consensus       162 i~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~  241 (473)
                      +..+..++...+........+-+.|+..--.+++++..++..+..+..++..|..+...|..+|..++.+++.-----..
T Consensus       122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d  201 (546)
T KOG0977|consen  122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVD  201 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88888887777777777777888888777788888888888888888888888888888888887777655533322233


Q ss_pred             hHHHHHHHHHHHHHHH--------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH------------HHhhh
Q 011982          242 LSVDITQLRMQVVELE--------ESRNNLLQEN---------RQLKENVSSLRSQLSSDESK------------KLQHA  292 (473)
Q Consensus       242 l~~e~~~Lk~q~~eL~--------deRK~LwrEe---------~kL~~~i~~L~~eL~~ae~~------------l~~ae  292 (473)
                      ++..+..|...+.-+.        +.+....++-         .+|...+..++.+.+..-..            +..+.
T Consensus       202 ~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~  281 (546)
T KOG0977|consen  202 LQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR  281 (546)
T ss_pred             HHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3333333333333222        3333333332         23333333333333221111            01110


Q ss_pred             h------------h-chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982          293 T------------S-EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  333 (473)
Q Consensus       293 ~------------~-~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~  333 (473)
                      +            + ++..|...|-.+.+.+.-+..-|..|..++.+|.-|+++
T Consensus       282 ~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e  335 (546)
T KOG0977|consen  282 TSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE  335 (546)
T ss_pred             hhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence            0            1 566677777777777777888888888888888887654

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.33  E-value=0.002  Score=74.05  Aligned_cols=16  Identities=19%  Similarity=0.333  Sum_probs=8.4

Q ss_pred             HHHHhhhhHHHHHHHH
Q 011982          302 QIEAAGALIDKLITEN  317 (473)
Q Consensus       302 ql~~~~~~~~~l~~Ey  317 (473)
                      ++-++|+-+..+..+-
T Consensus       469 kvs~FG~~m~~lL~~I  484 (1074)
T KOG0250|consen  469 KVSAFGPNMPQLLRAI  484 (1074)
T ss_pred             hhhhcchhhHHHHHHH
Confidence            4555555555555443

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.27  E-value=0.0013  Score=71.85  Aligned_cols=26  Identities=8%  Similarity=0.245  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           89 EETVKHLRNERESHIQKEATLEGTVQ  114 (473)
Q Consensus        89 ~~ei~qlE~E~~~l~q~~a~LE~kik  114 (473)
                      ....+.++.++..+...+..++..+.
T Consensus       173 k~~~~e~~~~i~~l~~~i~~l~~~i~  198 (562)
T PHA02562        173 KDKIRELNQQIQTLDMKIDHIQQQIK  198 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444443333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=0.0047  Score=71.30  Aligned_cols=18  Identities=44%  Similarity=0.634  Sum_probs=13.1

Q ss_pred             cccCcc--hhHHHHHHhhcc
Q 011982          445 PLIGAP--FRLVSFVAKYVS  462 (473)
Q Consensus       445 ~~~~~~--f~~~~~~~~~~~  462 (473)
                      ..|.||  |+=||.||.||-
T Consensus      1224 DEIDAALDfkNVSIVanYIk 1243 (1293)
T KOG0996|consen 1224 DEIDAALDFKNVSIVANYIK 1243 (1293)
T ss_pred             hhHHHhhccccchhHHHHHH
Confidence            344555  677999999983

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=0.0096  Score=67.93  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      .+...+.........-..+...|..++++++.++...+.++..+...++.+..++..+...+......++.+..+.....
T Consensus       798 ~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k  877 (1174)
T KOG0933|consen  798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQK  877 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence            34444444444445555555666666666666666666666666666666666666666666666666665555555555


Q ss_pred             HHHHHHHHHHHHHH
Q 011982          272 ENVSSLRSQLSSDE  285 (473)
Q Consensus       272 ~~i~~L~~eL~~ae  285 (473)
                      ..+..+..++....
T Consensus       878 ~k~~~~dt~i~~~~  891 (1174)
T KOG0933|consen  878 AKQRDIDTEISGLL  891 (1174)
T ss_pred             HHHHhhhHHHhhhh
Confidence            55555544444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.22  E-value=0.003  Score=71.16  Aligned_cols=87  Identities=26%  Similarity=0.306  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  166 (473)
Q Consensus        87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~  166 (473)
                      .|+.+++.|..|+....+....|..++..|...-......+..+..+...|+.++.........-...+..+++++.+..
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777888888888888888877777666666555555556666666666666655555554444444444444444444


Q ss_pred             HHhhchH
Q 011982          167 QREGGLE  173 (473)
Q Consensus       167 ~kl~~le  173 (473)
                      .....++
T Consensus       502 ~~R~~lE  508 (697)
T PF09726_consen  502 RQRASLE  508 (697)
T ss_pred             HHHHHHH
Confidence            4444333

; GO: 0016021 integral to membrane

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.22  E-value=0.011  Score=64.70  Aligned_cols=96  Identities=16%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----h-chhchHHHHHHhhhhHHH
Q 011982          239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-----S-EQKDFSTQIEAAGALIDK  312 (473)
Q Consensus       239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----~-~~~dMe~ql~~~~~~~~~  312 (473)
                      +..+...+..|+..+.........+..........+.+|..++..+...+..+..     . .+.+|...|+++....+.
T Consensus       304 ~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~  383 (522)
T PF05701_consen  304 ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEE  383 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333334444444444444444444444444433211     1 577888888888888888


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh
Q 011982          313 LITENIELVEKVNDLSVKLDRQ  334 (473)
Q Consensus       313 l~~Ey~~L~~k~neL~~~~~~~  334 (473)
                      +..+.......+-.+.....+.
T Consensus       384 Ak~ea~~~~~E~~~~k~E~e~~  405 (522)
T PF05701_consen  384 AKKEAEEAKEEVEKAKEEAEQT  405 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777777776655544

Several sequences in this family are described as being myosin heavy chain-like.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.16  E-value=0.006  Score=73.07  Aligned_cols=65  Identities=14%  Similarity=0.243  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           82 LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ  146 (473)
Q Consensus        82 ~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq  146 (473)
                      .+..+.+...+..+......+.+.+......+..+...+..........+..+..++.....+..
T Consensus       606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  670 (1201)
T PF12128_consen  606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQ  670 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444444444444444444444444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.14  E-value=0.012  Score=65.68  Aligned_cols=181  Identities=19%  Similarity=0.237  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 011982           77 ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---------EKVATLEETIQQLQRQNDLRMQK  147 (473)
Q Consensus        77 ~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~---------qk~~~LE~eLkeLq~eI~~~eqk  147 (473)
                      |+..|-++-..+..++..+.+++.....+...|+..+.+|..++....         .....+..++..|+.++..+..+
T Consensus        23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q  102 (617)
T PF15070_consen   23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ  102 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777777777777777777777777777777666555211         22234445555555555555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          148 EATLEETIKQLRNQNDLHIQREGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD  224 (473)
Q Consensus       148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~L---K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~E  224 (473)
                      +......-..|..-......++..++.++..+   ..++...+..-.+=...+++.-.....|+.++..++...-.+..+
T Consensus       103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne  182 (617)
T PF15070_consen  103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE  182 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            33332222233222233333344444444444   233444333322333344444555555666666666666666655


Q ss_pred             HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982          225 KDSWTQMESVSKETIAGLSVDITQLRMQVVELE  257 (473)
Q Consensus       225 I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~  257 (473)
                      -..++..+..-.-....|...+.+++.++..+.
T Consensus       183 ~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~  215 (617)
T PF15070_consen  183 NMELTSALQSEQHVKKELQKKLGELQEKLHNLK  215 (617)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444333333333333333433333333

>PRK03918 chromosome segregation protein; Provisional

Probab=98.12  E-value=0.022  Score=65.79  Aligned_cols=25  Identities=8%  Similarity=0.286  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          261 NNLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       261 K~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      ..+..+...|......+...+..++
T Consensus       401 ~~l~~~i~~l~~~~~~~~~~i~eL~  425 (880)
T PRK03918        401 EEIEEEISKITARIGELKKEIKELK  425 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444443333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.12  E-value=0.0032  Score=68.46  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=72.5

Q ss_pred             ccccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 011982           68 AESANLAEAERQHLLQREAI---LEETVKHLRNERESHIQKEATLE---------------GTVQQLQNECDLYKEKVAT  129 (473)
Q Consensus        68 ~~~~~~~~~~~~~~~q~e~~---~~~ei~qlE~E~~~l~q~~a~LE---------------~kikeL~eei~~~~qk~~~  129 (473)
                      ...-.+-+.||+-+.++=.-   --+..+.||.+.+.|...+..++               ..+..+..-++.....++.
T Consensus        31 s~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~  110 (546)
T KOG0977|consen   31 SPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK  110 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH
Confidence            34455667777765554333   23344445555555544333333               4444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 011982          130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-------ALEQKISQLRD  202 (473)
Q Consensus       130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-------~Le~~I~~l~~  202 (473)
                      ++.++..|+.++.....++.+........+..+......++.+++.+..++..+..+.....       .+...|...+.
T Consensus       111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            55555555555555555544443333333333333333333333333333332222222222       33333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          203 ESAALNMKRASLEERLKLLEADKDSWT  229 (473)
Q Consensus       203 el~~L~~ei~~Leeeie~Le~EI~~L~  229 (473)
                      .++.-..-..+++..+..|-++|+++.
T Consensus       191 ~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  191 QLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333333334444455555555555544

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.11  E-value=0.025  Score=61.36  Aligned_cols=191  Identities=19%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Q 011982           98 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL----------HIQ  167 (473)
Q Consensus        98 E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~----------L~~  167 (473)
                      ....+.++.+.|+.++..++.-......+....+..+..++.+|...+.+.+.+..+...|+.+++.          +-.
T Consensus       260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~  339 (581)
T KOG0995|consen  260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL  339 (581)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            3344455555566666666666666666666666667777666666666666666665555554432          222


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HH---------HHHHHh
Q 011982          168 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EAD--KD---------SWTQME  232 (473)
Q Consensus       168 kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L----e~E--I~---------~L~~ei  232 (473)
                      +...+...+.....++|.|-+.--.++-.+...-.++..+-.....+-..|.-.    ..-  +.         .++...
T Consensus       340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V  419 (581)
T KOG0995|consen  340 ERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYV  419 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHh
Confidence            333344444445666666655544333333332222222222222222222111    000  00         001100


Q ss_pred             H-hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          233 S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       233 ~-~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      . .+.+-+.+...++.........|++-+.++-.-..++.+.+..+..++..++...
T Consensus       420 ~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~  476 (581)
T KOG0995|consen  420 KPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKY  476 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 1223344444555555555555555555555555555555555555555555444

>PRK03918 chromosome segregation protein; Provisional

Probab=98.10  E-value=0.022  Score=65.85  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=12.1

Q ss_pred             HHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982          304 EAAGALIDKLITENIELVEKVNDLSVK  330 (473)
Q Consensus       304 ~~~~~~~~~l~~Ey~~L~~k~neL~~~  330 (473)
                      ..+...+..+..+...+....++|...
T Consensus       401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~  427 (880)
T PRK03918        401 EEIEEEISKITARIGELKKEIKELKKA  427 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.09  E-value=0.029  Score=61.52  Aligned_cols=57  Identities=18%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR  144 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~  144 (473)
                      .+.++..+..++...............+...-......++..|..+|..++..+...
T Consensus       135 ~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~  191 (522)
T PF05701_consen  135 VKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA  191 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666777766665555555555555555666666666666666665555543

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.06  E-value=0.028  Score=68.26  Aligned_cols=235  Identities=22%  Similarity=0.229  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI-------KQLRN  160 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL-------eeLe~  160 (473)
                      +..++..+..++..+.....+...+++.|...+..+.+....|+.+...|+..|....+....+..+|       ..+..
T Consensus       666 l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~  745 (1822)
T KOG4674|consen  666 LQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEA  745 (1822)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444555555555555555666777777777777777777777777777777777776555444444       44455


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 011982          161 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL----NMKRASLEERLKLLEADKDSWTQMESVSK  236 (473)
Q Consensus       161 ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L----~~ei~~Leeeie~Le~EI~~L~~ei~~~~  236 (473)
                      ++..|+++..-+......|..+++.+....-.+...+..++.....+    .....+++..|..|..++..++..+..-.
T Consensus       746 ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~  825 (1822)
T KOG4674|consen  746 ELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKS  825 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555444444555557777777777666666666555544443    34455667777888888888777766555


Q ss_pred             HHHhchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------------
Q 011982          237 ETIAGLS----VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS------------------  294 (473)
Q Consensus       237 e~L~~l~----~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~------------------  294 (473)
                      ..+..+.    ..+..++..++++.-...++..+...+...+..|...+..++..|..+...                  
T Consensus       826 ~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~  905 (1822)
T KOG4674|consen  826 SDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILED  905 (1822)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhH
Confidence            5555444    445677888888888888888888888888888888888888888655310                  


Q ss_pred             -------chhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          295 -------EQKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       295 -------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                             ++.++..++..+..-|......|.....
T Consensus       906 ~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq  940 (1822)
T KOG4674|consen  906 TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ  940 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   5555566666666666555555555444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.06  E-value=0.021  Score=63.82  Aligned_cols=246  Identities=16%  Similarity=0.178  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA----TLEETIK-------  156 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~----~le~eLe-------  156 (473)
                      ++..+.+++..++.|..+...+|.....|++.+..+...+...+.+|..+..+....++.+.    .+....+       
T Consensus        97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~  176 (1265)
T KOG0976|consen   97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNE  176 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            55566666666666666666666666666666666666666666666666555555444422    1111112       


Q ss_pred             ---HHHHHHHHHHHHhh----chHHHHHHH------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 011982          157 ---QLRNQNDLHIQREG----GLEMNIANL------QSEKEFWLQKEAALEQKIS--------------QLRDESAALNM  209 (473)
Q Consensus       157 ---eLe~ei~~L~~kl~----~le~rl~~L------K~ERD~wLqkEi~Le~~I~--------------~l~~el~~L~~  209 (473)
                         +++.+...+.++.+    .+...+.+|      +.++--.+.+...+...|.              -++.....+.+
T Consensus       177 ~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E  256 (1265)
T KOG0976|consen  177 ELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEE  256 (1265)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHH
Confidence               22222222222211    123333333      1111111111112222222              22233333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 011982          210 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE-----------ESRNNLLQENRQLKENVSSLR  278 (473)
Q Consensus       210 ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~-----------deRK~LwrEe~kL~~~i~~L~  278 (473)
                      ....++..-..+.+...+|+..-.-+.+++++...-+..++..++.++           +.++-|.-+..+|.+..-.++
T Consensus       257 ~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadir  336 (1265)
T KOG0976|consen  257 QDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIR  336 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444555555555555555555555444           556677788888888888888


Q ss_pred             HHHHHHHHHHHhhhhhchhchHHHHH-------HhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982          279 SQLSSDESKKLQHATSEQKDFSTQIE-------AAGALIDKLITENIELVEKVNDLSVKLDRQ  334 (473)
Q Consensus       279 ~eL~~ae~~l~~ae~~~~~dMe~ql~-------~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~  334 (473)
                      -+|-.+.++++... .++.+++.+-.       .+....+.-..|.+.|..---++..|.|-+
T Consensus       337 c~LlEarrk~egfd-dk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel  398 (1265)
T KOG0976|consen  337 CALLEARRKAEGFD-DKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL  398 (1265)
T ss_pred             HHHHHHHHhhcchh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777765441 02333333322       333333344445555555455555555444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.02  E-value=0.023  Score=64.78  Aligned_cols=85  Identities=16%  Similarity=0.206  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 011982           95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM  174 (473)
Q Consensus        95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~  174 (473)
                      +..-+.....+++.+|..+..|.+++..+.............+.+++.........+..+++.+.-++....+++..+++
T Consensus       229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt  308 (775)
T PF10174_consen  229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT  308 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555555555554444433333333333333333333333333344444444444444433333


Q ss_pred             HHHHH
Q 011982          175 NIANL  179 (473)
Q Consensus       175 rl~~L  179 (473)
                      ++..+
T Consensus       309 ~l~~~  313 (775)
T PF10174_consen  309 RLETL  313 (775)
T ss_pred             HHHHH
Confidence            33333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.00  E-value=0.0029  Score=62.25  Aligned_cols=22  Identities=23%  Similarity=0.149  Sum_probs=15.0

Q ss_pred             ceeecCCCchhhhcccccccCCceeeec
Q 011982          388 INGVHADPPPLVLSSSEAEYSGEIVQIP  415 (473)
Q Consensus       388 ~vvv~d~~a~~~~~~~~~~~~gritf~P  415 (473)
                      |+++++.+.+.|..      .++|+|-|
T Consensus       204 ~m~l~~~~~~~V~~------~d~iv~CP  225 (239)
T COG1579         204 HMKLPSQTLSKVRK------KDEIVFCP  225 (239)
T ss_pred             eeeecHHHHHHHhc------CCCCccCC
Confidence            78777777664443      67777777

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.99  E-value=0.051  Score=61.58  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=19.2

Q ss_pred             CcccccCCc-----cccCcchhHHHHHHhhc
Q 011982          436 VAAVPLTDA-----PLIGAPFRLVSFVAKYV  461 (473)
Q Consensus       436 ~~~vPl~~~-----~~~~~~f~~~~~~~~~~  461 (473)
                      .+|+|+.+.     -.=|.+..=.+|+||.+
T Consensus       640 ~ekFp~v~~~~reavt~ghageqyaf~arll  670 (1243)
T KOG0971|consen  640 QEKFPLVENCSREAVTRGHAGEQYAFAARLL  670 (1243)
T ss_pred             HhhCCCccccchhhccccchhHHHHHHHHHH
Confidence            468888877     33477788889999854

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.99  E-value=0.035  Score=67.52  Aligned_cols=34  Identities=9%  Similarity=0.322  Sum_probs=15.0

Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011982          299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD  332 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~  332 (473)
                      .+.+++.+......+.+.+..+..+.++|..+..
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~  596 (1486)
T PRK04863        563 LEARLESLSESVSEARERRMALRQQLEQLQARIQ  596 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.99  E-value=0.0011  Score=60.40  Aligned_cols=135  Identities=21%  Similarity=0.254  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982          176 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE  255 (473)
Q Consensus       176 l~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e  255 (473)
                      +..++.+.|.|..+-..++..+..+......+..++.+|...+..++.+++.+...+......+........        
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~--------   73 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS--------   73 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------
Confidence            345678888888888777777777777777776666666666666666666666655444444333222111        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----h-chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982          256 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-----S-EQKDFSTQIEAAGALIDKLITENIELVEKVNDLS  328 (473)
Q Consensus       256 L~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----~-~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~  328 (473)
                                ....|++.++-|..+|..++..|..+..     . ..+.++.+++++..........|.+|..+|+++.
T Consensus        74 ----------~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k  142 (143)
T PF12718_consen   74 ----------NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK  142 (143)
T ss_pred             ----------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence                      1115666666666666666666665532     2 6778888999999988888888888888888753

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.98  E-value=0.031  Score=67.91  Aligned_cols=251  Identities=21%  Similarity=0.253  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHH
Q 011982           81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL----------------------EETIQQLQ  138 (473)
Q Consensus        81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L----------------------E~eLkeLq  138 (473)
                      .......++..+..+...+..+.......+..+..|..+++.+.......                      +..+..|+
T Consensus       563 ~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe  642 (1822)
T KOG4674|consen  563 DKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLE  642 (1822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHH
Confidence            44445556677777777777777777777777777777777774333322                      33344444


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhc--------------hHHHHHHHHH------HHHHHHHHHH-HH
Q 011982          139 RQNDLRMQK----EATLEETIKQLRNQNDLHIQREGG--------------LEMNIANLQS------EKEFWLQKEA-AL  193 (473)
Q Consensus       139 ~eI~~~eqk----e~~le~eLeeLe~ei~~L~~kl~~--------------le~rl~~LK~------ERD~wLqkEi-~L  193 (473)
                      ..+......    +..+...+..++.++..+...+..              ++.-+..||.      +|..|++..| .-
T Consensus       643 ~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~  722 (1822)
T KOG4674|consen  643 NELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQ  722 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433222    334444455555555555444332              2223333333      4555555555 55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 011982          194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ----ENRQ  269 (473)
Q Consensus       194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr----Ee~k  269 (473)
                      +..+..+..++......+..++.++..|..+-.-+......+...+..+..+...++.-++.++-.-+.+-+    .+.+
T Consensus       723 ~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~  802 (1822)
T KOG4674|consen  723 EQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDK  802 (1822)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555544444445555555554444443333333322221111    1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh-------h---h-------chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982          270 LKENVSSLRSQLSSDESKKLQHA-------T---S-------EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  331 (473)
Q Consensus       270 L~~~i~~L~~eL~~ae~~l~~ae-------~---~-------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~  331 (473)
                      +...+..|..+|+.+...+....       .   .       .+.+|..-+..+...+..+.++|+.|..++++|..++
T Consensus       803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l  881 (1822)
T KOG4674|consen  803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRL  881 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444443321       1   1       3444444444444445555555555555555555433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.98  E-value=0.042  Score=62.88  Aligned_cols=99  Identities=23%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh--h----chhchHHHHHHhhh
Q 011982          238 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK---LQHAT--S----EQKDFSTQIEAAGA  308 (473)
Q Consensus       238 ~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l---~~ae~--~----~~~dMe~ql~~~~~  308 (473)
                      ....|++.++++..+..++++.-|.|.-|..+|...+......+..-...-   .+.-.  +    +.+.+..+|+..+.
T Consensus       416 k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk  495 (1195)
T KOG4643|consen  416 KHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNK  495 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555556666666666666665555555544444331111   11100  0    56777778888888


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 011982          309 LIDKLITENIELVEKVNDLSVKLDRQSV  336 (473)
Q Consensus       309 ~~~~l~~Ey~~L~~k~neL~~~~~~~~~  336 (473)
                      .+.....|-..|..+++||..|.+..+.
T Consensus       496 ~L~~r~~elsrl~a~~~elkeQ~kt~~~  523 (1195)
T KOG4643|consen  496 SLNNRDLELSRLHALKNELKEQYKTCDI  523 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888887766554

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0057  Score=67.88  Aligned_cols=20  Identities=30%  Similarity=0.014  Sum_probs=10.8

Q ss_pred             cccccccCCceeeecCCCCC
Q 011982          401 SSSEAEYSGEIVQIPLDDKE  420 (473)
Q Consensus       401 ~~~~~~~~gritf~PLn~~~  420 (473)
                      ...+++...+|||.|=|=|-
T Consensus       700 y~FeaRs~dEisf~pGDII~  719 (1118)
T KOG1029|consen  700 YPFEARSHDEISFEPGDIII  719 (1118)
T ss_pred             cccccCCcccccccCCCEEE
Confidence            33455555666666655443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.93  E-value=0.061  Score=62.51  Aligned_cols=24  Identities=13%  Similarity=0.248  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          262 NLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      .+..+...+...+..+..++..+.
T Consensus       367 ~l~~~l~~~~~~~~~~~~~~~~l~  390 (895)
T PRK01156        367 SYLKSIESLKKKIEEYSKNIERMS  390 (895)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHH
Confidence            333333333333444444333333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.92  E-value=0.033  Score=56.33  Aligned_cols=74  Identities=11%  Similarity=0.129  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          216 ERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       216 eeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      +++..+......+...+..+..+.++...++..+-...+++.++...+..+.-++...++.+..++.++...+.
T Consensus       165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr  238 (294)
T COG1340         165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR  238 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444444444444444444444444444444444444444444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.90  E-value=0.035  Score=58.75  Aligned_cols=201  Identities=13%  Similarity=0.139  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 011982           83 QREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK----QL  158 (473)
Q Consensus        83 q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe----eL  158 (473)
                      +.-.....+|.+++..+....+..+.|+..+++++.++.+...++......++.++..|......+..+..+-.    -|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566667777777777777777777777777777777777777777777777777666666555444331    11


Q ss_pred             HHHHHHHHHH-hhc---hHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          159 RNQNDLHIQR-EGG---LEMNIA-NLQSEKEFWLQKEA--ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM  231 (473)
Q Consensus       159 e~ei~~L~~k-l~~---le~rl~-~LK~ERD~wLqkEi--~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~e  231 (473)
                      -..+..++.- ...   +..... -....|-.-+-..+  .....|..+...+..|......+..+..++..-......+
T Consensus       118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q  197 (420)
T COG4942         118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ  197 (420)
T ss_pred             HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111110 000   000000 01222222222222  3344455555555555555555555555554444444444


Q ss_pred             hHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          232 ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  283 (473)
Q Consensus       232 i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~  283 (473)
                      ...+..-+.+-+....++...+...+...++|......|...+.++..+...
T Consensus       198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~  249 (420)
T COG4942         198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAK  249 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444444444445556666666666666667777777777777777655553

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=0.042  Score=59.66  Aligned_cols=229  Identities=12%  Similarity=0.090  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 011982           90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQND-------LRMQKEATLEETIKQLRNQN  162 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~-------~~eqke~~le~eLeeLe~ei  162 (473)
                      .++..++...+.+...+.    .+......++++..+.+.+...+..++.-..       .+.+.++.+..+++..+.++
T Consensus       235 ~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~  310 (581)
T KOG0995|consen  235 NEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEI  310 (581)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444    2222233334444444444444444433333       33333444444444444444


Q ss_pred             HHHHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 011982          163 DLHIQREGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETI  239 (473)
Q Consensus       163 ~~L~~kl~~le~rl~~L---K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L  239 (473)
                      +.+..+...|+..+..-   -++....-.....+...+..+..+++.+.+.+-+++.+++..=.+|..+-...+.+-.+|
T Consensus       311 e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i  390 (581)
T KOG0995|consen  311 EKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI  390 (581)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444333322211   222222222233555556666666666666655555555444444444333333222222


Q ss_pred             hchHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          240 AGLSV------------------------------DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       240 ~~l~~------------------------------e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      .---.                              -+.....++.+...+.-.|..-...+...+..+...+...+-.+.
T Consensus       391 ~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~  470 (581)
T KOG0995|consen  391 KLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELK  470 (581)
T ss_pred             HHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11100                              002223334444444445666666666666666666666666666


Q ss_pred             hhhh-----------------hchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          290 QHAT-----------------SEQKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       290 ~ae~-----------------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                      .++.                 .+++-|+.++....-.+...+.+-.+++.
T Consensus       471 ~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~  520 (581)
T KOG0995|consen  471 KAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVK  520 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6632                 06677776666666666665555555544

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.88  E-value=0.025  Score=63.00  Aligned_cols=89  Identities=20%  Similarity=0.248  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q 011982           80 HLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK---------EAT  150 (473)
Q Consensus        80 ~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk---------e~~  150 (473)
                      ++-|.-+.-..--.++..+...|.++++.+-..+..|..+.......+..|+.+|..|+.++......         +..
T Consensus         5 ~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~   84 (617)
T PF15070_consen    5 SLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQ   84 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHH
Confidence            44455555555667788888889999999999999999999999999999999999988777654321         223


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011982          151 LEETIKQLRNQNDLHIQR  168 (473)
Q Consensus       151 le~eLeeLe~ei~~L~~k  168 (473)
                      +..++..|+++++.+..+
T Consensus        85 Lq~E~~~L~kElE~L~~q  102 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQ  102 (617)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444455555555554443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.88  E-value=0.01  Score=67.88  Aligned_cols=112  Identities=10%  Similarity=0.128  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982          180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  259 (473)
Q Consensus       180 K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de  259 (473)
                      ..++..+....-.+.+.+..+.....-+...+..|+.++..+.+++......+......+....+.+......+..+..+
T Consensus       247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~  326 (1072)
T KOG0979|consen  247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNK  326 (1072)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444344444444444444555555555555555555555555544444444444444444444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          260 RNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       260 RK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ...|.+........+.++...+..++..+..+
T Consensus       327 le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~  358 (1072)
T KOG0979|consen  327 LESLKKAAEKRQKRIEKAKKMILDAQAELQET  358 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            55555555555555555555555555555555

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.87  E-value=0.096  Score=60.10  Aligned_cols=137  Identities=16%  Similarity=0.098  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          152 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL---RDESAALNMKRASLEERLKLLEADKDSW  228 (473)
Q Consensus       152 e~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l---~~el~~L~~ei~~Leeeie~Le~EI~~L  228 (473)
                      .-+++.++..+..+....+.++.....+..|++.++...-.+.......   +..++.+.....++......+...|..+
T Consensus       414 s~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknl  493 (1195)
T KOG4643|consen  414 SKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNL  493 (1195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666666667677777777778877776555444444433   4555566666667777777777778888


Q ss_pred             HHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          229 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      .+.+++....++.+.+.++.++.|+..+.-.+..+-..-..|...+..++.+-.-+...+
T Consensus       494 nk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI  553 (1195)
T KOG4643|consen  494 NKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQI  553 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888887778888888777777777777776666655555555555555554444444444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.87  E-value=0.027  Score=64.18  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          258 ESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      ++...+..+...|...++.|+.++......+
T Consensus       465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l  495 (775)
T PF10174_consen  465 EELETYQKELKELKAKLESLQKELSEKELQL  495 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3334455555555555555555555555444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.84  E-value=0.0085  Score=67.65  Aligned_cols=81  Identities=22%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ  157 (473)
Q Consensus        78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee  157 (473)
                      -+..+|.|..|...+..+.+.-+.+...+..+..+..+|+.++..+.+.+......+..|+.++.........++.+|.+
T Consensus       434 Lq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e  513 (697)
T PF09726_consen  434 LQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE  513 (697)
T ss_pred             HHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555444444555555555555555555555555555555555555555544444444444444


Q ss_pred             H
Q 011982          158 L  158 (473)
Q Consensus       158 L  158 (473)
                      .
T Consensus       514 E  514 (697)
T PF09726_consen  514 E  514 (697)
T ss_pred             H
Confidence            3

; GO: 0016021 integral to membrane

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.83  E-value=0.046  Score=55.25  Aligned_cols=61  Identities=23%  Similarity=0.335  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           91 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATL  151 (473)
Q Consensus        91 ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~l  151 (473)
                      ....+..+...+...+..+..+++++.+...++..+...+-.++..|+..-...-.....+
T Consensus        28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL   88 (294)
T COG1340          28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL   88 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555555555555555555555555555444444444443333333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.79  E-value=0.057  Score=54.95  Aligned_cols=62  Identities=15%  Similarity=0.144  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhh---chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982          268 RQLKENVSSLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  329 (473)
Q Consensus       268 ~kL~~~i~~L~~eL~~ae~~l~~ae~~---~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~  329 (473)
                      ..+.+.+..|+.++.++...+..+...   ++..+-...+.++..+-.+..-.+..++|...||-
T Consensus       225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R  289 (310)
T PF09755_consen  225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCR  289 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777666555321   34444455566666677777777777777777774

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.053  Score=60.89  Aligned_cols=205  Identities=15%  Similarity=0.190  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 011982           74 AEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK------  147 (473)
Q Consensus        74 ~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk------  147 (473)
                      ++.+-+.+...-..++..|+.++-++..+.+....+....++|++++.........+.++...|+.++.-....      
T Consensus       648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q  727 (970)
T KOG0946|consen  648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ  727 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence            33344556666667888888888888888888888888888888888888888888888888887777622211      


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Q 011982          148 ----EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-------------ALEQKISQLRDESAALNMK  210 (473)
Q Consensus       148 ----e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-------------~Le~~I~~l~~el~~L~~e  210 (473)
                          .....+.+..+..+...+..++..+...+....+-+..|-....             ..+..+..+...+.....+
T Consensus       728 ~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~  807 (970)
T KOG0946|consen  728 GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTR  807 (970)
T ss_pred             HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhH
Confidence                11223334444444444444444333333322222222222221             1122333333334444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          211 RASLEERLKLLEADKDSWTQMESVSKETIAGLS-------VDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  278 (473)
Q Consensus       211 i~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~-------~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~  278 (473)
                      ..+++.++..++++++.+...+...-+.+..++       .+......+...+..+-+........+...+.+|.
T Consensus       808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~  882 (970)
T KOG0946|consen  808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE  882 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence            555555666666666665555555544444444       33344444555566666655555565655555555

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.70  E-value=0.044  Score=52.85  Aligned_cols=166  Identities=18%  Similarity=0.200  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 011982           90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK---EATLEETIKQLRNQNDLHI  166 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk---e~~le~eLeeLe~ei~~L~  166 (473)
                      .-|..+..++....+.....+..+.++..+...+..-+..+..++..|+..+......   +..+..++..+..++..+.
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk  106 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK  106 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777777777777777777777777777777777776654   4466778888899999999


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982          167 QREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD  245 (473)
Q Consensus       167 ~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e  245 (473)
                      -+...++.++..+..|||.|..+.. .+..-..       ...-.-.-|+..+..+...++....++.+.-....=--..
T Consensus       107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ-------k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~  179 (201)
T PF13851_consen  107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ-------KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAA  179 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999998885 3222222       2223333344444444444444444433332222211133


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          246 ITQLRMQVVELEESRNN  262 (473)
Q Consensus       246 ~~~Lk~q~~eL~deRK~  262 (473)
                      +..+...+..+-+....
T Consensus       180 ~~~v~~~l~~~l~~KN~  196 (201)
T PF13851_consen  180 LSQVSKKLEDVLDSKNQ  196 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444445444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.68  E-value=0.027  Score=55.53  Aligned_cols=64  Identities=16%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           94 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ  157 (473)
Q Consensus        94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee  157 (473)
                      .+..++..+.-+.......++.+..+++........++..+..|+.++...+..+..+..+++.
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~   77 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR   77 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444444333333333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.67  E-value=0.27  Score=59.24  Aligned_cols=173  Identities=14%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 011982          159 RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKI---SQLRDESAALNMKRASLEERLKLLEADKDSWTQME--  232 (473)
Q Consensus       159 e~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I---~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei--  232 (473)
                      ..+...+...++..+.+++.+...+..|...-| .+...+   ...+.++..+...+..|......++...+.+...+  
T Consensus       312 ~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~  391 (1201)
T PF12128_consen  312 NKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE  391 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333 222222   23333344444444444444444444433333332  


Q ss_pred             ------HhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Q 011982          233 ------SVSKETIAGLSVDITQLRMQVVELEESRNNLLQ-----ENRQLKENVSSLRSQLSSDESKKLQHATS-------  294 (473)
Q Consensus       233 ------~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr-----Ee~kL~~~i~~L~~eL~~ae~~l~~ae~~-------  294 (473)
                            .....++..+..+....+.+...-.+....-|+     ....+......+..++..++..+..+..+       
T Consensus       392 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~  471 (1201)
T PF12128_consen  392 AFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQL  471 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHH
Confidence                  233333444444433333333333333333333     23344444444444444444444333110       


Q ss_pred             -----chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982          295 -----EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  331 (473)
Q Consensus       295 -----~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~  331 (473)
                           .++..+.+...+...+..+..+...+..+.+....++
T Consensus       472 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l  513 (1201)
T PF12128_consen  472 EQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL  513 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3334444444444444444555555555444444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.13  Score=55.61  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982          181 SEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  259 (473)
Q Consensus       181 ~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de  259 (473)
                      +.+..+....| .++++++.++.++...+.+.+++...-..+-..-...+.+.-.+++.|......-..|...|.+|.++
T Consensus        99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen   99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE  178 (772)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555 88888888888888888888888777777777666677766677777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 011982          260 RNNLLQENRQLKEN---VSSLRSQLSSDESKK  288 (473)
Q Consensus       260 RK~LwrEe~kL~~~---i~~L~~eL~~ae~~l  288 (473)
                      --+|......|+..   ...|+.++.+++..+
T Consensus       179 NIsLQKqVs~LR~sQVEyEglkheikRleEe~  210 (772)
T KOG0999|consen  179 NISLQKQVSNLRQSQVEYEGLKHEIKRLEEET  210 (772)
T ss_pred             cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            77777766666653   445555555555544

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.63  E-value=0.17  Score=56.00  Aligned_cols=48  Identities=27%  Similarity=0.403  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh---hchhchHHHHHHhhhhHHHHHHHH
Q 011982          270 LKENVSSLRSQLSSDESKKLQHAT---SEQKDFSTQIEAAGALIDKLITEN  317 (473)
Q Consensus       270 L~~~i~~L~~eL~~ae~~l~~ae~---~~~~dMe~ql~~~~~~~~~l~~Ey  317 (473)
                      |-..+..|+..|+..++...+-+.   .+|.+|...++++--+.+.++++.
T Consensus       585 lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  585 LVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333344444444444444433221   277888888888777777666653

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.62  E-value=0.14  Score=58.13  Aligned_cols=177  Identities=15%  Similarity=0.197  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 011982           81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET---IKQ  157 (473)
Q Consensus        81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e---Lee  157 (473)
                      +.+.-.......-++++.+........+++..+..+.-+++.........-.+...|+.+...........+.-   +++
T Consensus       335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee  414 (980)
T KOG0980|consen  335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEE  414 (980)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555666677777777777777777777777777777776666665555555556655555544432222221   344


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 011982          158 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKE  237 (473)
Q Consensus       158 Le~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e  237 (473)
                      .+.+......+...+...+..|..+--.+|++.-.+..++...+..+.....+...|...++++..+...++...++..+
T Consensus       415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~  494 (980)
T KOG0980|consen  415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAK  494 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44554455555555555555555555555555555555555555555555555555555555555555555554444444


Q ss_pred             HHhchHHHHHHHHHHHHHHH
Q 011982          238 TIAGLSVDITQLRMQVVELE  257 (473)
Q Consensus       238 ~L~~l~~e~~~Lk~q~~eL~  257 (473)
                      .+..++.++.-+..++..|+
T Consensus       495 ~le~l~~El~~l~~e~~~lq  514 (980)
T KOG0980|consen  495 ALESLRQELALLLIELEELQ  514 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444443333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.60  E-value=0.14  Score=54.28  Aligned_cols=40  Identities=18%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          250 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       250 k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      +.-..+|......-.....+|....++|...+..++....
T Consensus       209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3333444444444444555555555555555555554443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.60  E-value=0.069  Score=61.65  Aligned_cols=255  Identities=15%  Similarity=0.195  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           73 LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE  152 (473)
Q Consensus        73 ~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le  152 (473)
                      -+|.+=+.+.++-..|..+|..+.. ++.   ....++.++.-|...+.........+...+..++.++...+.....+.
T Consensus       649 wdek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~  724 (1141)
T KOG0018|consen  649 WDEKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFG  724 (1141)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3566666666666777777777777 333   666677777777777777777776666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          153 ETIKQLRNQNDLHIQREGGLEMNIANL---------------------QSEKEFWLQKEAALEQKISQLRDESAALNMKR  211 (473)
Q Consensus       153 ~eLeeLe~ei~~L~~kl~~le~rl~~L---------------------K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei  211 (473)
                      ++|.++...++........|+.++...                     ...-..+-.+...++..+..+...++-.++  
T Consensus       725 p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--  802 (1141)
T KOG0018|consen  725 PEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--  802 (1141)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--
Confidence            666666555555555555555554443                     011112222222555555555555544333  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHH-------HHHhch---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          212 ASLEERLKLLEADKDSWTQMESVSK-------ETIAGL---S----VDITQLRMQVVELEESRNNLLQENRQLKENVSSL  277 (473)
Q Consensus       212 ~~Leeeie~Le~EI~~L~~ei~~~~-------e~L~~l---~----~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L  277 (473)
                      .++...++.++..++.+..++.++.       ..+...   +    .....+...+.+..+.-..+..+..+|.+.+..+
T Consensus       803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~  882 (1141)
T KOG0018|consen  803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI  882 (1141)
T ss_pred             ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3334444444444444444433333       222222   1    1112222333333333334444444455555555


Q ss_pred             HHHHHHHHHHHHhhhhh-chh---------chHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982          278 RSQLSSDESKKLQHATS-EQK---------DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ  334 (473)
Q Consensus       278 ~~eL~~ae~~l~~ae~~-~~~---------dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~  334 (473)
                      .+.+.+........-.. +++         .|+.-..-+...-.-|-.+|. |..++++....++..
T Consensus       883 es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~  948 (1141)
T KOG0018|consen  883 ESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLNRI  948 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHH-HHHHHHHHHHHHHHh
Confidence            54444444333222000 222         222222222222234567888 888999998888776

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.59  E-value=0.073  Score=50.64  Aligned_cols=180  Identities=20%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhchHHHHHHHHH
Q 011982          105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQS  181 (473)
Q Consensus       105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL---eeLe~ei~~L~~kl~~le~rl~~LK~  181 (473)
                      .+..|+..-+.|.++.....+.+...+.-...|..+|.........+..-+   +.+..++..++.-...+++....|-+
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a   88 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA   88 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444333333333322222111   22233444444444433333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982          182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN  261 (473)
Q Consensus       182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK  261 (473)
                      .....-+....|.+.|..++.+...+..+.+.+...+..|..+...|..++..++.-+....+-+.+.-.++++|.    
T Consensus        89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~----  164 (193)
T PF14662_consen   89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELK----  164 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----
Confidence            3222222222666667777777777777777777777777666666666665555555444444443333333333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          262 NLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                         .-....+.....|+.++.+++..+.++
T Consensus       165 ---~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  165 ---KTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               223344455556666666666666543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.57  E-value=0.018  Score=52.58  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG  170 (473)
Q Consensus       111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~  170 (473)
                      .....+.+....+..++..++.....+..+|.++..+...++.+++.+...+......+.
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le   66 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE   66 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444445555555444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.52  E-value=0.091  Score=49.97  Aligned_cols=54  Identities=17%  Similarity=0.245  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 011982          131 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  184 (473)
Q Consensus       131 E~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD  184 (473)
                      +.++..|+......+..-..+..+-..++++...|..++..++..-..+..++|
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~  119 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD  119 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            333344444433333333344444444444444444444433333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.49  E-value=0.16  Score=56.24  Aligned_cols=18  Identities=17%  Similarity=-0.036  Sum_probs=9.6

Q ss_pred             hhhhhhhhcccCCccccc
Q 011982          340 LSSAIGSDAVTALTSDTE  357 (473)
Q Consensus       340 l~s~~~~~~~~~l~~v~g  357 (473)
                      |+.+.+...+++|+|+=.
T Consensus       427 L~~ikr~l~k~~lpgip~  444 (569)
T PRK04778        427 LHEIKRYLEKSNLPGLPE  444 (569)
T ss_pred             HHHHHHHHHHcCCCCCcH
Confidence            334445555666766533

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.48  E-value=0.022  Score=59.65  Aligned_cols=15  Identities=20%  Similarity=0.246  Sum_probs=7.7

Q ss_pred             ccccccccccccccC
Q 011982          371 NRLETQGVVAVKEDR  385 (473)
Q Consensus       371 ~~~~t~~e~~~~~ag  385 (473)
                      +.+..-+.||+...|
T Consensus       308 ~~~~v~~~v~~~~~~  322 (423)
T TIGR01843       308 DPLEIEAKLSPKDIG  322 (423)
T ss_pred             CcEEEEEEEChhhhh
Confidence            345555555554444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.48  E-value=0.28  Score=54.63  Aligned_cols=80  Identities=13%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------chhchHHHHHHhhhhHHHHHHHHH
Q 011982          255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS----------------EQKDFSTQIEAAGALIDKLITENI  318 (473)
Q Consensus       255 eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~----------------~~~dMe~ql~~~~~~~~~l~~Ey~  318 (473)
                      ++..--+.-..++.+.......|+.++..+...|.++++-                +.=-+=.+|...|..+-..+.+--
T Consensus       495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG  574 (594)
T PF05667_consen  495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETG  574 (594)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333334445556666666666777777777777666530                111122344556666666666666


Q ss_pred             HHHHhhhhhhhhhhhh
Q 011982          319 ELVEKVNDLSVKLDRQ  334 (473)
Q Consensus       319 ~L~~k~neL~~~~~~~  334 (473)
                      .++...-+|..|++..
T Consensus       575 ~~~rEirdLe~qI~~e  590 (594)
T PF05667_consen  575 TISREIRDLEEQIDTE  590 (594)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666777777666543

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.47  E-value=0.26  Score=54.17  Aligned_cols=211  Identities=18%  Similarity=0.168  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 011982          112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET----IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL  187 (473)
Q Consensus       112 kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e----LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wL  187 (473)
                      ....|.++......++..++..+..++..|.....+...++..    ......++.-+..++...+.|+..+..+...+-
T Consensus       183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~  262 (629)
T KOG0963|consen  183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR  262 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555555555554444333    444555566666666666666665544443332


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982          188 QKEAALEQKISQLR--DESAALNMKRASLEERLKLLEADKDSWTQM----ESVSKETIAGLSVDITQLRMQVVELEESRN  261 (473)
Q Consensus       188 qkEi~Le~~I~~l~--~el~~L~~ei~~Leeeie~Le~EI~~L~~e----i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK  261 (473)
                      ..-...+ .-..+.  ..++.+...+.+.+..|..|..+|..++..    ++.|..+|+.+..++......++++..+.+
T Consensus       263 ~ql~~~N-~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  263 EQLAKAN-SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHhhh-hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222 222222  445555555666666666666666555442    223334444444443333333333333222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------h-------hh----chhchHHHHHHhhhhHHHHHHHHHHHHHh
Q 011982          262 NLLQENRQLKENVSSLRSQLSSDESKKLQH-------A-------TS----EQKDFSTQIEAAGALIDKLITENIELVEK  323 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a-------e-------~~----~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k  323 (473)
                      +-        +..+.++.+|.-+...- ..       +       .|    +..-|+++...++.-+.-+..+-.++..+
T Consensus       342 ~~--------sDYeeIK~ELsiLk~ie-f~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~  412 (629)
T KOG0963|consen  342 SR--------SDYEEIKKELSILKAIE-FGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKK  412 (629)
T ss_pred             hh--------ccHHHHHHHHHHHHHhh-cCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhh
Confidence            21        23333333333322211 10       0       01    45556666666666666666666777777


Q ss_pred             hhhhhhhhh
Q 011982          324 VNDLSVKLD  332 (473)
Q Consensus       324 ~neL~~~~~  332 (473)
                      +.+|..+-.
T Consensus       413 ~~el~~~~~  421 (629)
T KOG0963|consen  413 GEELEAKAT  421 (629)
T ss_pred             hhhhHHHHH
Confidence            777776544

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.46  E-value=0.11  Score=49.73  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011982          111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA  177 (473)
Q Consensus       111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~  177 (473)
                      .++++|.+++.........+..++..|+.-..-....+..++..=.++-.-+..+..+...++.++.
T Consensus        12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR   78 (194)
T PF15619_consen   12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLR   78 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555444443333333333333333333333333333333333333

>PRK09039 hypothetical protein; Validated

Probab=97.46  E-value=0.033  Score=57.90  Aligned_cols=32  Identities=13%  Similarity=0.244  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLR  144 (473)
Q Consensus       113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~  144 (473)
                      +.+|-+-+.........++..+..|+..+...
T Consensus        62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a   93 (343)
T PRK09039         62 IAELADLLSLERQGNQDLQDSVANLRASLSAA   93 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33344444444555555555555555444433

>PRK09039 hypothetical protein; Validated

Probab=97.44  E-value=0.044  Score=57.03  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN  261 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK  261 (473)
                      .++..+..+...+...+....+...++..|+.+|+.|+.++..++..|...+.+..+.+.++..|.....
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555555555555544554444444444444444443333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.44  E-value=0.21  Score=52.10  Aligned_cols=184  Identities=17%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  168 (473)
Q Consensus        89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k  168 (473)
                      ..++++.+.|+......+...-.+-+....+.....+........+..+.++-......+..+..+...+..+.+.++..
T Consensus        94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~  173 (499)
T COG4372          94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS  173 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666677777777777776666777777777777777777777777


Q ss_pred             hhchHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982          169 EGGLEMNIANLQSEKEFWLQKE--A-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD  245 (473)
Q Consensus       169 l~~le~rl~~LK~ERD~wLqkE--i-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e  245 (473)
                      ...|+....++|.++-.+-...  | .-...+....+.+.....++.+.+.....+...|+.+...+......++.-.+.
T Consensus       174 ~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~  253 (499)
T COG4372         174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ  253 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            7777766666655443332211  1 222233344444555555555555555555555555555555444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          246 ITQLRMQVVELEESRNNLLQENRQLKE  272 (473)
Q Consensus       246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~  272 (473)
                      +..-..++..|+-+-.-|.+|..+|..
T Consensus       254 I~~re~~lq~lEt~q~~leqeva~le~  280 (499)
T COG4372         254 IRERERQLQRLETAQARLEQEVAQLEA  280 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444434443344333334444433333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.34  Score=54.46  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=15.7

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                      +|.-.+.|+..++.....++---.+|.+
T Consensus       564 eidi~n~qlkelk~~~~~q~lake~~yk  591 (1118)
T KOG1029|consen  564 EIDIFNNQLKELKEDVNSQQLAKEELYK  591 (1118)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666777776666655544444333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.38  E-value=0.51  Score=55.47  Aligned_cols=59  Identities=22%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHI-QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ  146 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~-q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq  146 (473)
                      |.+.+.++......+. +.++.+....+...........++..++..+..++.+++..++
T Consensus       470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~  529 (1317)
T KOG0612|consen  470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK  529 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443 2333333444444444444444444444444444444444433

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=97.38  E-value=0.055  Score=55.51  Aligned_cols=182  Identities=17%  Similarity=0.182  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 011982          142 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ--------------KEAALEQKISQLRDESAAL  207 (473)
Q Consensus       142 ~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLq--------------kEi~Le~~I~~l~~el~~L  207 (473)
                      ++....+-.+..+|+..+.+.+.++..-..++.|...++..+..|..              ....+..-+...+.....|
T Consensus         5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L   84 (319)
T PF09789_consen    5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKL   84 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHH
Confidence            33444455556666666666666666666666677777666666662              2236667777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS-----VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS  282 (473)
Q Consensus       208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~-----~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~  282 (473)
                      ..++..|...+.+++.++.-|+..+....-...++.     .+..++-.+++.+..+...|.++...+-.+.+.+..+.+
T Consensus        85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD  164 (319)
T PF09789_consen   85 KEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERD  164 (319)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888887776553333333     223333333333333333333333333333333333333


Q ss_pred             HHHHHHHhhhhhchhchHHHHHHh-------hhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982          283 SDESKKLQHATSEQKDFSTQIEAA-------GALIDKLITENIELVEKVNDLSVKL  331 (473)
Q Consensus       283 ~ae~~l~~ae~~~~~dMe~ql~~~-------~~~~~~l~~Ey~~L~~k~neL~~~~  331 (473)
                      ....++.+.        .++|-++       -.+|+.++-||-=|-+|++.+...+
T Consensus       165 ~yk~K~~RL--------N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~  212 (319)
T PF09789_consen  165 AYKCKAHRL--------NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK  212 (319)
T ss_pred             HHHHHHHHH--------HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333322        1111111       0135567777777777777666543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.18  Score=56.88  Aligned_cols=66  Identities=15%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           98 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  163 (473)
Q Consensus        98 E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~  163 (473)
                      ....+..-...+..-+..+..+++...+....+..+.+.|+.++.........+..++.-|+.++.
T Consensus       651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444555555666666666666666666666666666665555555555555555555544

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.33  E-value=0.45  Score=53.69  Aligned_cols=265  Identities=13%  Similarity=0.126  Sum_probs=136.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           70 SANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA  149 (473)
Q Consensus        70 ~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~  149 (473)
                      .|.-.|..|.-..|.+-.+.....-+++++..+...+..|...+..+..+...+...++.++..+++-+.+|+....+..
T Consensus        72 eSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh  151 (1265)
T KOG0976|consen   72 ESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLH  151 (1265)
T ss_pred             chhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34444555666677777788888888888888888888888888888888888888888888887777777777777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 011982          150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA----LEQKISQLRDE------SAALNMKRASLEERLK  219 (473)
Q Consensus       150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~----Le~~I~~l~~e------l~~L~~ei~~Leeeie  219 (473)
                      .+...|..-...+......+...-+.+..|..++...+..-..    +...+..++..      +..+..+...+..++.
T Consensus       152 ~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl  231 (1265)
T KOG0976|consen  152 KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVL  231 (1265)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            6666655444444444333333333333333333322221111    11111111111      1111111122222222


Q ss_pred             HHHHHHHHHHHHhH-------hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011982          220 LLEADKDSWTQMES-------VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA  292 (473)
Q Consensus       220 ~Le~EI~~L~~ei~-------~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae  292 (473)
                      .-.-++.+..+.+.       -.++....++.-...+.+...++.-.+.-|-+|...-...+-.++.+|+.......++.
T Consensus       232 ~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~  311 (1265)
T KOG0976|consen  232 KEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD  311 (1265)
T ss_pred             HHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            21222222111111       22233333333333444455555555555666666555566666666666666665553


Q ss_pred             h-----h---chhchH--HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982          293 T-----S---EQKDFS--TQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ  334 (473)
Q Consensus       293 ~-----~---~~~dMe--~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~  334 (473)
                      +     +   .++.|.  .|+..++..+-.+-.--.-|-+|.|+|+.+-++.
T Consensus       312 gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~a  363 (1265)
T KOG0976|consen  312 GDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMA  363 (1265)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence            2     1   334443  3333443333334444455666888888765543

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.27  E-value=0.32  Score=50.73  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ  157 (473)
Q Consensus        78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee  157 (473)
                      +.-.+|.+.+ ...++.+..+..........++..-.....++....+.....+.++..++.......+.+..+..+...
T Consensus        70 r~gVfqlddi-~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~  148 (499)
T COG4372          70 RSGVFQLDDI-RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQD  148 (499)
T ss_pred             HhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555443 334566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhchH
Q 011982          158 LRNQNDLHIQREGGLE  173 (473)
Q Consensus       158 Le~ei~~L~~kl~~le  173 (473)
                      ++..+..+-.+...+.
T Consensus       149 lqtrl~~l~~qr~ql~  164 (499)
T COG4372         149 LQTRLKTLAEQRRQLE  164 (499)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666655555544333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.28  Score=49.09  Aligned_cols=66  Identities=15%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           92 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ  157 (473)
Q Consensus        92 i~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee  157 (473)
                      +...+.++..+.+....++.++..|..++.....+...+..++..++.+|...++++..+..+|.+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~   98 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE   98 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777888888888888888888888888888888888888887777777777777766666654

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.21  E-value=7.8e-05  Score=85.88  Aligned_cols=156  Identities=18%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ  157 (473)
Q Consensus        78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee  157 (473)
                      |..|...-+.+...+.++...+..+.+....++..+.+|...++.........+..++.+...+..+..+.......+..
T Consensus       126 rkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~e  205 (859)
T PF01576_consen  126 RKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNE  205 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666667777777777777777777777788888888877777777777777777777777776665555555555


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982          158 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES  233 (473)
Q Consensus       158 Le~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~  233 (473)
                      +......+..++..+...+..+......+-+....+...+..++..++.-......|...+..++.+++.|..++.
T Consensus       206 l~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqle  281 (859)
T PF01576_consen  206 LTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLE  281 (859)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444444333333333333444444444444444444444444444444444444433333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.18  E-value=0.69  Score=52.79  Aligned_cols=150  Identities=15%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI---QQLQRQNDLRMQKEATLEETIKQLRNQND  163 (473)
Q Consensus        87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eL---keLq~eI~~~eqke~~le~eLeeLe~ei~  163 (473)
                      .++.....++-+...-.......-.+..+|..+..........+++..   .+....+..++.+.+.+...+.++...-.
T Consensus       362 q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~  441 (980)
T KOG0980|consen  362 QYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHA  441 (980)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444433333333333334467777766666666666665   67777777777777777777777777777


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982          164 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS  243 (473)
Q Consensus       164 ~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~  243 (473)
                      .+..|.+.....+.--       .+...++++....+...+..+..+...++...+....-+++++.++..+..++..++
T Consensus       442 ~lL~K~~di~kQle~~-------~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq  514 (980)
T KOG0980|consen  442 DLLRKYDDIQKQLESA-------EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ  514 (980)
T ss_pred             HHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666433322221       122223344444444444444444444444444444444444444444444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.15  E-value=0.085  Score=48.03  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          188 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN  267 (473)
Q Consensus       188 qkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe  267 (473)
                      .+...+...+...+...+++...+..++.++...+.....+...-.+....+..+..++..+-..+..|.-+...+..|.
T Consensus         3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk   82 (140)
T PF10473_consen    3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK   82 (140)
T ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666667777777777777776666666666665555556666666555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 011982          268 RQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       268 ~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      ..|....+..+..++.++....
T Consensus        83 ~~L~k~lq~~q~kv~eLE~~~~  104 (140)
T PF10473_consen   83 ENLDKELQKKQEKVSELESLNS  104 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Confidence            5555555555555555444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.14  E-value=0.65  Score=51.68  Aligned_cols=51  Identities=20%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  230 (473)
Q Consensus       180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~  230 (473)
                      |.+-...++.-| .+++.+.+.+.....++..+..|+.....++...+.+..
T Consensus       514 Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  514 KEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            777777777777 788888888888887777777777777777777777665

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.14  E-value=0.13  Score=46.86  Aligned_cols=65  Identities=22%  Similarity=0.250  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982          195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  259 (473)
Q Consensus       195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de  259 (473)
                      +.|..+..++..+...+..++.++..+.++...|...+....+.++.|.....++..-+..+.++
T Consensus        52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.13  E-value=0.00011  Score=84.79  Aligned_cols=248  Identities=20%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           86 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH  165 (473)
Q Consensus        86 ~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L  165 (473)
                      ..+..++..+...+..+.+....++..++.+..++..+..+....+..+..+.............+...+......+..+
T Consensus       155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l  234 (859)
T PF01576_consen  155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQL  234 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555555555555555555555555555555555555555555555544444444444444444444444444444


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982          166 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL-------NMKRASLEERLKLLEADKDSWTQMESVSKET  238 (473)
Q Consensus       166 ~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L-------~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~  238 (473)
                      ......+...+..++...+...+....+...+..+..++..+       ......++..+..+..++..|+...+.-...
T Consensus       235 ~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~  314 (859)
T PF01576_consen  235 QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ  314 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            433333444444444444444444434444444444444444       4444455555556666666665554432211


Q ss_pred             -HhchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------
Q 011982          239 -IAGLS-------VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-----------------  293 (473)
Q Consensus       239 -L~~l~-------~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----------------  293 (473)
                       +..+.       ..+.++..++..+......|-+-..+|...+..+..+|.++.......+-                 
T Consensus       315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~  394 (859)
T PF01576_consen  315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVE  394 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             22233       33344444555555555555555555555555555555554443322210                 


Q ss_pred             -----------------hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982          294 -----------------SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  333 (473)
Q Consensus       294 -----------------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~  333 (473)
                                       +++-.|..++......++.+..++..|...+.+|..++++
T Consensus       395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~  451 (859)
T PF01576_consen  395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD  451 (859)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence                             0444455555555555555555555555555555554443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.12  E-value=0.73  Score=51.94  Aligned_cols=76  Identities=24%  Similarity=0.311  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          210 KRASLEERLKLLEADKDSWTQMESVS--KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       210 ei~~Leeeie~Le~EI~~L~~ei~~~--~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      .+..+..++..++.+|+.+..++...  .+.+..+...+..+..++..+..+...+.++...+...+..++.++.+..
T Consensus       392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  469 (650)
T TIGR03185       392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT  469 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444321  24444444555555555555555555555555555555555555554433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.11  E-value=0.28  Score=47.04  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982          260 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  333 (473)
Q Consensus       260 RK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~  333 (473)
                      |..|.++...+...++.....++.+++.+.-+    ......|+..-..-...+..+++.|..++..|.-+++.
T Consensus       120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~----~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE----NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444455555555544222    11144555555556666666777777777777665543

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.11  E-value=0.22  Score=55.49  Aligned_cols=84  Identities=24%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982          249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS-EQKDFSTQIEAAGALIDKLITENIELVEKVNDL  327 (473)
Q Consensus       249 Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~-~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL  327 (473)
                      ...++..+..+.+.+..|...-...+..|..++.++-..+.+...+ -|-++=..|..=..+|.+-..+--.|-+..|-|
T Consensus       445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l  524 (594)
T PF05667_consen  445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL  524 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444433221 334444455555556666666666666666666


Q ss_pred             hhhhh
Q 011982          328 SVKLD  332 (473)
Q Consensus       328 ~~~~~  332 (473)
                      ..+|+
T Consensus       525 ~gkL~  529 (594)
T PF05667_consen  525 TGKLD  529 (594)
T ss_pred             HHHHH
Confidence            66554

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.09  E-value=0.28  Score=46.75  Aligned_cols=185  Identities=13%  Similarity=0.145  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 011982           87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEE-------TIKQLR  159 (473)
Q Consensus        87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~-------eLeeLe  159 (473)
                      .+...|..++.+...+..+.+.+..++.++........+....++.....+...+...+.++.....       .+++.-
T Consensus         8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVa   87 (205)
T KOG1003|consen    8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVA   87 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666666555555555555555555555555444444332221       222222


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982          160 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET  238 (473)
Q Consensus       160 ~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~  238 (473)
                      ..+.-+...+..+        .+|-..-...+ .|..++..+.+.+.++...-..+....+..+.+|..+...+..-.-.
T Consensus        88 rkL~iiE~dLE~~--------eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~r  159 (205)
T KOG1003|consen   88 RKLVIIEGELERA--------EERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETR  159 (205)
T ss_pred             HHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Confidence            2222222222211        22222333344 56666666666666666666666666666666666666654433322


Q ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS  279 (473)
Q Consensus       239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~  279 (473)
                      -....-.+..|...++.|.+.......+-..+...++..-.
T Consensus       160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~  200 (205)
T KOG1003|consen  160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQ  200 (205)
T ss_pred             HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            22333345555555555555555555544444444444333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.08  E-value=0.93  Score=53.12  Aligned_cols=68  Identities=18%  Similarity=0.168  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982          112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL  179 (473)
Q Consensus       112 kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L  179 (473)
                      ++....+-++...+.....+.-|+....-|...++.+.++.++....+.......+.++++..+++.|
T Consensus      1564 ~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1564 QAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333444444444444444444444444444444444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.08  E-value=0.32  Score=47.15  Aligned_cols=131  Identities=21%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 011982          148 EATLEETIKQLRNQNDLHIQREGGLEMNIANL-------QSEKEFWLQKEAALEQKISQLRDESAALNMKRASL----EE  216 (473)
Q Consensus       148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-------K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~L----ee  216 (473)
                      .......+..+..+.+.+.+.+.+++..+.+|       |.-...|...+..|...+......+....+....|    +.
T Consensus        64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAee  143 (207)
T PF05010_consen   64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEE  143 (207)
T ss_pred             HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555544444444       55555555555555555555555444444444433    44


Q ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          217 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  281 (473)
Q Consensus       217 eie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL  281 (473)
                      .+..-..+|+.++.   .+...+..++..+...+.++..|.......-+|..+|...-+.|-..+
T Consensus       144 kL~~ANeei~~v~~---~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~  205 (207)
T PF05010_consen  144 KLEKANEEIAQVRS---KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM  205 (207)
T ss_pred             HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555556665555   566777778888888888888888888888888888877777765543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=97.08  E-value=0.12  Score=51.42  Aligned_cols=156  Identities=16%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          123 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD  202 (473)
Q Consensus       123 ~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~  202 (473)
                      ..+++..++.++..|+++-...+=+++.++..|...+.+.+.-+.+...++.....|-...+.+-+....+.-++.....
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~   95 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES   95 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence            44666677777777776666666666666776766666666666666666555555666666666666666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH------------------HHHHHHHHHHHHHHHHHH
Q 011982          203 ESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI------------------TQLRMQVVELEESRNNLL  264 (473)
Q Consensus       203 el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~------------------~~Lk~q~~eL~deRK~Lw  264 (473)
                      .+..+...+......|+.|+.+|.-++.+++............+                  ...-..+++|+++++.-.
T Consensus        96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkev  175 (307)
T PF10481_consen   96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEV  175 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHH
Confidence            77777777777777777777777777776664443333222111                  112356666776666666


Q ss_pred             HHHHHHHHHHHHHH
Q 011982          265 QENRQLKENVSSLR  278 (473)
Q Consensus       265 rEe~kL~~~i~~L~  278 (473)
                      .|+.+|..++-.|.
T Consensus       176 eerkrle~e~k~lq  189 (307)
T PF10481_consen  176 EERKRLEAEVKALQ  189 (307)
T ss_pred             HHHhhHHHHHHHHh
Confidence            66666665555554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK11281 hypothetical protein; Provisional

Probab=97.04  E-value=1.2  Score=53.10  Aligned_cols=46  Identities=20%  Similarity=0.150  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      +..|-..+..+.++.+.+.++.......++++.....+.+.+++..
T Consensus       287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l  332 (1113)
T PRK11281        287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL  332 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555666677778888888888888888888888888877777555

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.02  E-value=0.3  Score=50.45  Aligned_cols=14  Identities=21%  Similarity=0.325  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHH
Q 011982          274 VSSLRSQLSSDESK  287 (473)
Q Consensus       274 i~~L~~eL~~ae~~  287 (473)
                      +..|+..+..++..
T Consensus       278 v~~Lk~~~~~Le~~  291 (325)
T PF08317_consen  278 VKRLKAKVDALEKL  291 (325)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.77  Score=49.98  Aligned_cols=87  Identities=22%  Similarity=0.282  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          193 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE  272 (473)
Q Consensus       193 Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~  272 (473)
                      .-..|-.+.+++..+..++...+++.+.+......+...-...+...-.|..++.+.+---.-|-.++.+|-.|...|..
T Consensus       105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK  184 (772)
T KOG0999|consen  105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK  184 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            33445555555555555555555555555555555544444444455555555555555555555556666666666666


Q ss_pred             HHHHHHH
Q 011982          273 NVSSLRS  279 (473)
Q Consensus       273 ~i~~L~~  279 (473)
                      .++.|+.
T Consensus       185 qVs~LR~  191 (772)
T KOG0999|consen  185 QVSNLRQ  191 (772)
T ss_pred             HHHHHhh
Confidence            6665554

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.98  E-value=0.16  Score=45.52  Aligned_cols=85  Identities=21%  Similarity=0.225  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHH
Q 011982          179 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE  258 (473)
Q Consensus       179 LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~d  258 (473)
                      ....|..-+......-..|..++.++..+...+..+..........+.....   .|..+-..+..++..++..+.+|..
T Consensus        43 Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~  119 (132)
T PF07926_consen   43 AQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNE  119 (132)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555445556666666666666666666666655555554433   3444444444555555555555554


Q ss_pred             HHHHHHHH
Q 011982          259 SRNNLLQE  266 (473)
Q Consensus       259 eRK~LwrE  266 (473)
                      +-+-|...
T Consensus       120 QN~lLh~Q  127 (132)
T PF07926_consen  120 QNKLLHDQ  127 (132)
T ss_pred             HHHHHHHH
Confidence            44444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.98  E-value=0.39  Score=54.35  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           80 HLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR  139 (473)
Q Consensus        80 ~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~  139 (473)
                      .++.=..+|+.++.|++.|+..+...+......+..-+..+.....++..|...+..|..
T Consensus       262 l~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  262 LNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            566677889999999999999999999888888888888888888888888888888776

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.94  E-value=0.58  Score=47.82  Aligned_cols=135  Identities=15%  Similarity=0.177  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          154 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT  229 (473)
Q Consensus       154 eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~  229 (473)
                      .++.|+.++..|..+...++....+|+.+-+.+-.++.    ++-+.+......+..|..++..-.++....+.+|..|.
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll  240 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL  240 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555433333322222    44556666667777777777777777777777777777


Q ss_pred             HHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          230 QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       230 ~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      .++.++...+..+..+...|...+....+....|.-|...|.........-+..+...+
T Consensus       241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl  299 (306)
T PF04849_consen  241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL  299 (306)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777776666666666665555555554444444444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.93  E-value=0.98  Score=50.93  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 011982          267 NRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       267 e~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      ...+...+..++.++..+..++
T Consensus       393 ~~~~~~~~~~~e~el~~l~~~l  414 (650)
T TIGR03185       393 KSQLLKELRELEEELAEVDKKI  414 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.85  E-value=1.2  Score=49.81  Aligned_cols=228  Identities=18%  Similarity=0.206  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           93 KHLRNERESHIQKEATL----EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  168 (473)
Q Consensus        93 ~qlE~E~~~l~q~~a~L----E~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k  168 (473)
                      +.++.+.....+.+..+    +..+.++..-...+...++.+...+..|+.-+..-.++...++..|.-+..+++.....
T Consensus       313 ~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~e  392 (786)
T PF05483_consen  313 KALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSE  392 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Confidence            34444444443333333    45566666666666667777777777777777776776666666666555555444444


Q ss_pred             hhchH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982          169 EGGLE-------MNIANLQ---SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET  238 (473)
Q Consensus       169 l~~le-------~rl~~LK---~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~  238 (473)
                      +.++.       ..+..|+   .+...++...-.++.-...++..-..|..-+...+.++..|+..+.........+..+
T Consensus       393 leEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQ  472 (786)
T PF05483_consen  393 LEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQ  472 (786)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH
Confidence            43211       1111111   1111122222222222222222233333334444555555555555555555555566


Q ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHH
Q 011982          239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENI  318 (473)
Q Consensus       239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~  318 (473)
                      +..+..++..-+-+..+|......|..|...+....+....++..+..++...        ..|-....-.|+.|...++
T Consensus       473 VeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~--------k~qee~~~kqie~Lee~~~  544 (786)
T PF05483_consen  473 VEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNS--------KKQEEKMLKQIENLEETNT  544 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            66666666665666667777777777777777777777777777766666444        1122222334444555555


Q ss_pred             HHHHhhhhhh
Q 011982          319 ELVEKVNDLS  328 (473)
Q Consensus       319 ~L~~k~neL~  328 (473)
                      .|++.++-+.
T Consensus       545 ~Lrneles~~  554 (786)
T PF05483_consen  545 QLRNELESVK  554 (786)
T ss_pred             HHHHHHHHHH
Confidence            5554444333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.78  E-value=1.4  Score=49.98  Aligned_cols=91  Identities=19%  Similarity=0.198  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           83 QREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN  162 (473)
Q Consensus        83 q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei  162 (473)
                      .+|+.+...|..++.|.+.+...+.........|.............++.+...|+.+|.....++..+-..+.+|+.+.
T Consensus        27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN  106 (717)
T PF09730_consen   27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN  106 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            37788888888888888888888888888888888888888888888888888888888888887776666666666665


Q ss_pred             HHHHHHhhchH
Q 011982          163 DLHIQREGGLE  173 (473)
Q Consensus       163 ~~L~~kl~~le  173 (473)
                      -.|......++
T Consensus       107 islQKqvs~Lk  117 (717)
T PF09730_consen  107 ISLQKQVSVLK  117 (717)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.74  E-value=0.23  Score=53.76  Aligned_cols=27  Identities=4%  Similarity=0.012  Sum_probs=12.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982          302 QIEAAGALIDKLITENIELVEKVNDLS  328 (473)
Q Consensus       302 ql~~~~~~~~~l~~Ey~~L~~k~neL~  328 (473)
                      ++..+.-..+....-|..++.|+.+..
T Consensus       356 el~~L~Re~~~~~~~Y~~l~~r~eea~  382 (498)
T TIGR03007       356 ELTQLNRDYEVNKSNYEQLLTRRESAE  382 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=96.74  E-value=0.22  Score=56.89  Aligned_cols=32  Identities=3%  Similarity=-0.079  Sum_probs=21.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982          300 STQIEAAGALIDKLITENIELVEKVNDLSVKL  331 (473)
Q Consensus       300 e~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~  331 (473)
                      +.++..+.-..+...+=|..|+.|+.+..++.
T Consensus       375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       375 QVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455556666677777788888887777654

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.71  E-value=1.4  Score=48.76  Aligned_cols=41  Identities=17%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             cchhhhccccccCCCCcccccCCc---------cccCcchhHHHHHHhhccc
Q 011982          421 VQDLELQVVESYTDKVAAVPLTDA---------PLIGAPFRLVSFVAKYVSG  463 (473)
Q Consensus       421 ~~~~~~~~p~~~~~~~~~vPl~~~---------~~~~~~f~~~~~~~~~~~~  463 (473)
                      ..+++++||..|++.-+  ||+..         -..|+.+++.+-.+||++|
T Consensus       542 ~~d~e~~y~~~yee~l~--p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~  591 (629)
T KOG0963|consen  542 SSDVESQYSAAYEESIS--PFASFRKKERERKYKRLGSFERITLSLGRTLLF  591 (629)
T ss_pred             CcchhhhhhhHHHhhcC--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            44677788887665443  55443         5667778888878888776

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.70  E-value=1.2  Score=47.81  Aligned_cols=150  Identities=11%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           90 ETVKHLRNERESHIQKEAT---LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  166 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~---LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~  166 (473)
                      .++..+....+.+.+.+..   +-..++.|.+.-.....-...++.-...++...+.|-..+..+..+++..+.++..|.
T Consensus       271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~  350 (622)
T COG5185         271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ  350 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444433332   3345555555555555555555556666666666676677777777777777777777


Q ss_pred             HHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 011982          167 QREGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETI  239 (473)
Q Consensus       167 ~kl~~le~rl~~L---K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L  239 (473)
                      ++.+.+...+..-   -++....-+..+.|...+..+..+.+.|...+.+.+-++...=.++...-.+.+++..+|
T Consensus       351 ~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i  426 (622)
T COG5185         351 SNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI  426 (622)
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777665544433   233333333333555556666666666665555555444444444444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.70  E-value=1.4  Score=48.83  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------chhchHHHHHHhhhhHHHHHHHHHHHH
Q 011982          258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS----------------EQKDFSTQIEAAGALIDKLITENIELV  321 (473)
Q Consensus       258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~----------------~~~dMe~ql~~~~~~~~~l~~Ey~~L~  321 (473)
                      +.|+..+.....+...+..+......+...+.+...+                ++..+..+...+...+.....=|+.+.
T Consensus       299 ~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~  378 (560)
T PF06160_consen  299 EAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQ  378 (560)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            4444444444444444444444444444444333110                344444444444444444444555555


Q ss_pred             HhhhhhhhhhhhhhH--------------------------HhhhhhhhhhhcccCCcccc
Q 011982          322 EKVNDLSVKLDRQSV--------------------------AAGLSSAIGSDAVTALTSDT  356 (473)
Q Consensus       322 ~k~neL~~~~~~~~~--------------------------~~Gl~s~~~~~~~~~l~~v~  356 (473)
                      .++.++..++.....                          ..-|..+.+...+++|||+=
T Consensus       379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp  439 (560)
T PF06160_consen  379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP  439 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            555554444433221                          22344555556678888873

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.69  E-value=2.6  Score=51.67  Aligned_cols=228  Identities=15%  Similarity=0.133  Sum_probs=103.3

Q ss_pred             cccCCCCCCC---------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 011982           58 VDADRHQSNG---------AESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE---  125 (473)
Q Consensus        58 ~~~~~~~~~~---------~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~q---  125 (473)
                      |+.||+-..|         +-.-|-.++=...-..+.+.++.+|..++.++..+...++.++..+..|..+...+=.   
T Consensus       708 v~~dG~~r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~d  787 (1353)
T TIGR02680       708 IDVDGRFRLGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRS  787 (1353)
T ss_pred             ECCCCceeeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence            5666655555         2333445554444455667777777777777777777777777777777766544322   


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHHH
Q 011982          126 ------KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR---------EGGLEMNIANLQSEKEFWLQKE  190 (473)
Q Consensus       126 ------k~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k---------l~~le~rl~~LK~ERD~wLqkE  190 (473)
                            .+......+.....++.....+.......+...+.++...-.+         +..+...+..|...-..|....
T Consensus       788 L~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~  867 (1353)
T TIGR02680       788 LRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAV  867 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2222233333333333333444444444444444444433333         1112333333333333332211


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          191 A---ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN  267 (473)
Q Consensus       191 i---~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe  267 (473)
                      .   .....+......+..+...+...+.++..+..++..+..++..+.+.+..+   +.++..++.++...+..+..+.
T Consensus       868 ~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el  944 (1353)
T TIGR02680       868 RELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGREL  944 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            1   223333334444444444444444444444444444444444333332221   3333334444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011982          268 RQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       268 ~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      ..+.+....+...+..+...+
T Consensus       945 ~~~~~~~~~a~~~~~~a~~~~  965 (1353)
T TIGR02680       945 PRLAEALATAEEARGRAEEKR  965 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444433333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.64  E-value=0.036  Score=52.91  Aligned_cols=111  Identities=19%  Similarity=0.188  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  160 (473)
Q Consensus        81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~  160 (473)
                      +.+.-..+..++..+-..+..+.+++..+...+..+...+......+..+...+..|+.+|......+......++.+..
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D  151 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD  151 (194)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566678888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 011982          161 QNDLHIQREGGLEMNIANLQSEKEFWLQKEA  191 (473)
Q Consensus       161 ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi  191 (473)
                      ++..+...++.++.++..++.|+..++..-.
T Consensus       152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm  182 (194)
T PF08614_consen  152 ELQALQLQLNMLEEKLRKLEEENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988887773

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.60  E-value=1.1  Score=46.20  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM  209 (473)
Q Consensus       130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~  209 (473)
                      ...+++.|+.++....+++.++...+.-|+..+............  ..|-.+|..|+..-..+...+..+..++.++..
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~--~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD  154 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGA--RHFPHEREDLVEQLEKLREQIEQLERDLQSLLD  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444433333333222211  112377777777776777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Q 011982          210 KRASLEERLKLLEADKDSWTQMES  233 (473)
Q Consensus       210 ei~~Leeeie~Le~EI~~L~~ei~  233 (473)
                      ++.++..+.+.......-|..+++
T Consensus       155 EkeEl~~ERD~yk~K~~RLN~ELn  178 (319)
T PF09789_consen  155 EKEELVTERDAYKCKAHRLNHELN  178 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766666666666666666655443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.58  E-value=0.02  Score=54.71  Aligned_cols=87  Identities=25%  Similarity=0.367  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN  273 (473)
Q Consensus       194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~  273 (473)
                      ...+..++.++..+......+...+..+..++..++..+......|..+..++..|+..+..+.+..+.+.+-..-|..+
T Consensus        73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE  152 (194)
T PF08614_consen   73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE  152 (194)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344344444444444444444444444444444443333333333333333333333333333333333333333333


Q ss_pred             HHHHHHH
Q 011982          274 VSSLRSQ  280 (473)
Q Consensus       274 i~~L~~e  280 (473)
                      +..|+.+
T Consensus       153 ~~~L~l~  159 (194)
T PF08614_consen  153 LQALQLQ  159 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.52  E-value=1.2  Score=45.89  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             HHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          223 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  274 (473)
Q Consensus       223 ~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i  274 (473)
                      .++..+..++...+..+..++.++..+...+.++..++..+..+..++.+..
T Consensus       216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333334444444444444444443333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.43  E-value=1.4  Score=46.11  Aligned_cols=7  Identities=29%  Similarity=0.681  Sum_probs=3.8

Q ss_pred             CCceeee
Q 011982          408 SGEIVQI  414 (473)
Q Consensus       408 ~gritf~  414 (473)
                      .|+|++|
T Consensus       346 ~g~V~~i  352 (423)
T TIGR01843       346 NGKVKSI  352 (423)
T ss_pred             cEEEEEE
Confidence            4555555

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK10698 phage shock protein PspA; Provisional

Probab=96.40  E-value=1.1  Score=43.90  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK--------------------  147 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk--------------------  147 (473)
                      +..-+..+++=.+.+.+-+..++..+.++...+.........++.++..++..+..|+.+                    
T Consensus        15 in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K   94 (222)
T PRK10698         15 INALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK   94 (222)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            333444555555566666666666666666667777777777777777777777777664                    


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHH
Q 011982          148 ------EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK--ISQLRD--ESAALNMKRASLEER  217 (473)
Q Consensus       148 ------e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~--I~~l~~--el~~L~~ei~~Leee  217 (473)
                            ...+...+......+..|...+..|+.++..++..++.+.-+.......  +...-.  ...+.-..++.++..
T Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~k  174 (222)
T PRK10698         95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERR  174 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence                  2244444555555555555566666666666666666665555433222  221111  112233445555555


Q ss_pred             HHHHHHHHHHH
Q 011982          218 LKLLEADKDSW  228 (473)
Q Consensus       218 ie~Le~EI~~L  228 (473)
                      |..++.+.+..
T Consensus       175 i~~~Ea~aea~  185 (222)
T PRK10698        175 IDQMEAEAESH  185 (222)
T ss_pred             HHHHHHHHhHh
Confidence            55555555443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=2.5  Score=47.82  Aligned_cols=100  Identities=18%  Similarity=0.221  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH--------------HHHhchHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK--------------ETIAGLSVDITQLRMQVVELE  257 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~--------------e~L~~l~~e~~~Lk~q~~eL~  257 (473)
                      .+...+..+......+...+..++++...+......+.+++.-+.              ..+..++........++++++
T Consensus       507 ~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~  586 (698)
T KOG0978|consen  507 KLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ  586 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444433333333333332              333333333344444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      .....+..+...+.-....|+.++..+...+.++
T Consensus       587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~  620 (698)
T KOG0978|consen  587 EQYAELELELEIEKFKRKRLEEELERLKRKLERL  620 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555555555555555555555544

>PF13514 AAA_27: AAA domain

Probab=96.35  E-value=3.6  Score=49.38  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=9.5

Q ss_pred             hchHHHHHHhhhhHHHHHHHHH
Q 011982          297 KDFSTQIEAAGALIDKLITENI  318 (473)
Q Consensus       297 ~dMe~ql~~~~~~~~~l~~Ey~  318 (473)
                      ..+..+++.+...+..+..+|.
T Consensus       936 a~l~~e~e~~~a~l~~~~~~~~  957 (1111)
T PF13514_consen  936 AELEQEREEAEAELEELAEEWA  957 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.32  E-value=0.00097  Score=75.57  Aligned_cols=41  Identities=29%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982          295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  335 (473)
Q Consensus       295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~  335 (473)
                      .+..|..++..+......+..+|....+++-+|..++.+..
T Consensus       482 ~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq  522 (713)
T PF05622_consen  482 KLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQ  522 (713)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777777777777777777777766665443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.30  E-value=1.4  Score=47.77  Aligned_cols=8  Identities=13%  Similarity=0.576  Sum_probs=4.0

Q ss_pred             cccccCCc
Q 011982          437 AAVPLTDA  444 (473)
Q Consensus       437 ~~vPl~~~  444 (473)
                      ..+|.+..
T Consensus       458 g~iP~~~~  465 (498)
T TIGR03007       458 GVIPMIAT  465 (498)
T ss_pred             EecCCCCC
Confidence            34555544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.30  E-value=2.6  Score=47.17  Aligned_cols=253  Identities=14%  Similarity=0.153  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           84 REAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  163 (473)
Q Consensus        84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~  163 (473)
                      .+.....++...+.+...+.-....-+.++++|...+.........|+..-+....-+.........+..+|..+.....
T Consensus       227 leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq  306 (786)
T PF05483_consen  227 LEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQ  306 (786)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence            33445555556666666666666666666666666666666666666665555555555444444444444443333333


Q ss_pred             HHH-------HHhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          164 LHI-------QREGGLEMNIANLQSEKEFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       164 ~L~-------~kl~~le~rl~~LK~ERD~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      ...       ..+...-..+-++-.+.+.-+....    .....+..++..+..|..-+..-..+...++.++..+..++
T Consensus       307 ~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eL  386 (786)
T PF05483_consen  307 ESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMEL  386 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            222       2222222222222222222111111    11112222222222222222222222333333333333333


Q ss_pred             HhHHHHHhchH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hch
Q 011982          233 SVSKETIAGLS-------VDITQLRM---QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT------SEQ  296 (473)
Q Consensus       233 ~~~~e~L~~l~-------~e~~~Lk~---q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~------~~~  296 (473)
                      ......|..+.       -++..|+.   .-..|-++.+.+|+=...|....+.|..-|+..+..+...+.      ..-
T Consensus       387 qkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~e  466 (786)
T PF05483_consen  387 QKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESE  466 (786)
T ss_pred             HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            32222222222       11222222   112334555555655555555555555555555544443321      012


Q ss_pred             hchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 011982          297 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV  336 (473)
Q Consensus       297 ~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~  336 (473)
                      ..+-.|+..+...++.=.--|.+|...+|.|....+....
T Consensus       467 q~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ  506 (786)
T PF05483_consen  467 QHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ  506 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233344444444444444577777778887776655443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.27  E-value=0.079  Score=54.50  Aligned_cols=51  Identities=16%  Similarity=0.240  Sum_probs=24.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          241 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       241 ~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      .+..++..++.+...+.++-...|++...+......+..+.+.+...+..+
T Consensus        75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~  125 (314)
T PF04111_consen   75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA  125 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444555555555555555555555544444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=96.25  E-value=1.4  Score=43.67  Aligned_cols=84  Identities=20%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 011982          197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE---ESRNNLLQENRQLKEN  273 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~---deRK~LwrEe~kL~~~  273 (473)
                      +..++..+..+....+++..-|.+|+.--+.|+...-...-.+.+++..++.+-....-|.   +++..|....+.|+.+
T Consensus        93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE  172 (333)
T KOG1853|consen   93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE  172 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4444444455555555555555555555555554433444455666666666655555554   3334444444444433


Q ss_pred             HHHHHHH
Q 011982          274 VSSLRSQ  280 (473)
Q Consensus       274 i~~L~~e  280 (473)
                      ...|+.+
T Consensus       173 ardlrqe  179 (333)
T KOG1853|consen  173 ARDLRQE  179 (333)
T ss_pred             HHHHHHH
Confidence            3333333

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=96.21  E-value=1.3  Score=42.87  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 011982           85 EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK-----------------  147 (473)
Q Consensus        85 e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk-----------------  147 (473)
                      -+.+..-+..+++=...+.+.+..++..+.++...+.........++.++..+...+..|+.+                 
T Consensus        11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al   90 (221)
T PF04012_consen   11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL   90 (221)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            344555556666666777777777777777777777777777777777777777777777665                 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 011982          148 ---------EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  191 (473)
Q Consensus       148 ---------e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi  191 (473)
                               ...+...+..+...+..+...+..++.++..++.+++.+.-...
T Consensus        91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~  143 (221)
T PF04012_consen   91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN  143 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     22445555566666666666666667777777777776666554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.19  E-value=0.061  Score=61.23  Aligned_cols=58  Identities=26%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           85 EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQND  142 (473)
Q Consensus        85 e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~  142 (473)
                      .+.+..++..+..+...+...+..++..+.++...+..+......+...+..|+....
T Consensus       352 ~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~  409 (722)
T PF05557_consen  352 NASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKA  409 (722)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.19  E-value=1.3  Score=42.88  Aligned_cols=125  Identities=12%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      .+...+.++......+-.....+..-|..+...-+.|...+..+...+...+..+..|+..-.+.-      -.-...+.
T Consensus        80 q~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL------~~ANeei~  153 (207)
T PF05010_consen   80 QAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKL------EKANEEIA  153 (207)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            344445555555555656666666666666666666666666666666665555555544433222      12222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982          272 ENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK  330 (473)
Q Consensus       272 ~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~  330 (473)
                      ....+...++..+...|...        +-+++.+-..++.-..||.+|..=.++|..+
T Consensus       154 ~v~~~~~~e~~aLqa~lkk~--------e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k  204 (207)
T PF05010_consen  154 QVRSKHQAELLALQASLKKE--------EMKVQSLEESLEQKTKENEELTKICDELISK  204 (207)
T ss_pred             HHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444333        1123333334444556666666666666543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.18  E-value=0.012  Score=66.89  Aligned_cols=72  Identities=25%  Similarity=0.290  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhh--chhchHHHHH--HhhhhHHHHHHHHHHHHHhh
Q 011982          258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH---------ATS--EQKDFSTQIE--AAGALIDKLITENIELVEKV  324 (473)
Q Consensus       258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a---------e~~--~~~dMe~ql~--~~~~~~~~l~~Ey~~L~~k~  324 (473)
                      +....|..+...|.+....|+.++..++..|...         .++  .+.+=+....  .-...++.|..||..|+.++
T Consensus       503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l  582 (722)
T PF05557_consen  503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL  582 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444466666666666666666666666666541         111  1222121111  13567778888888888877


Q ss_pred             hhhhh
Q 011982          325 NDLSV  329 (473)
Q Consensus       325 neL~~  329 (473)
                      -.|..
T Consensus       583 ~~le~  587 (722)
T PF05557_consen  583 RSLEE  587 (722)
T ss_dssp             HHHTT
T ss_pred             Hhccc
Confidence            66653

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.11  E-value=2.4  Score=45.01  Aligned_cols=180  Identities=19%  Similarity=0.218  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhchH
Q 011982           95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI-KQLRNQNDLHIQREGGLE  173 (473)
Q Consensus        95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL-eeLe~ei~~L~~kl~~le  173 (473)
                      .+..+..+..+..+|+.++.+|.+...........+..+...|.......+....+.+-+- +.+..+...+..-+.   
T Consensus       213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~---  289 (502)
T KOG0982|consen  213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILI---  289 (502)
T ss_pred             hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---
Confidence            3445555666677777777777776655555555555555555444333332221111110 011111111111111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHH
Q 011982          174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV  253 (473)
Q Consensus       174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~  253 (473)
                            |.+|..-+..+ .++..+..+..+...+...+..|...++.|..+..-..+.++.+..++       ...+.-+
T Consensus       290 ------k~eReasle~E-nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql-------~~eq~l~  355 (502)
T KOG0982|consen  290 ------KKEREASLEKE-NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQL-------ICEQKLR  355 (502)
T ss_pred             ------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHH
Confidence                  56666666555 334444444444444444444444444444444433333333333333       2333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          254 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       254 ~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ..+.+......++...-...+..|..++..+....-.+
T Consensus       356 ~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~  393 (502)
T KOG0982|consen  356 VRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVL  393 (502)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444455555555555666666666665554333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=3.4  Score=46.75  Aligned_cols=125  Identities=18%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhhchHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          160 NQNDLHIQREGGLEMNIANL---Q----SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       160 ~ei~~L~~kl~~le~rl~~L---K----~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      .+....++-...++.+..+|   +    ..+..+....+.+......++...+.+...+..+......+       ...+
T Consensus       454 ~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~-------~~~i  526 (698)
T KOG0978|consen  454 SEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL-------ELKI  526 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            33333334444455555555   1    22223333344555555555544444444444444444444       4444


Q ss_pred             HhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          233 SVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       233 ~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ..+++++..+......+..+...+......+.+....+....+.|+..+......+.+.
T Consensus       527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i  585 (698)
T KOG0978|consen  527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI  585 (698)
T ss_pred             HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555556666666666666666667777777777776666666555

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=96.10  E-value=2.2  Score=45.89  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          263 LLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       263 LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ...+...+...+..++..+..++..+.++
T Consensus       289 ~~~~l~~~~~~l~~~~~~l~~a~~~l~~~  317 (457)
T TIGR01000       289 VKQEITDLNQKLLELESKIKSLKEDSQKG  317 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33344444444445555555555444444

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=96.06  E-value=2.6  Score=45.10  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          133 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  212 (473)
Q Consensus       133 eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~  212 (473)
                      .+..|+..+...+..+.+-+.+-+.|+-++..++.....|++|...--.+++..+..-+.+...+.....++..|+...-
T Consensus       391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkg  470 (527)
T PF15066_consen  391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKG  470 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33333333333333333333333334444444444444444444444555555555555555666655555555554444


Q ss_pred             HHH
Q 011982          213 SLE  215 (473)
Q Consensus       213 ~Le  215 (473)
                      .++
T Consensus       471 elE  473 (527)
T PF15066_consen  471 ELE  473 (527)
T ss_pred             HHH
Confidence            443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.03  E-value=0.0017  Score=73.68  Aligned_cols=71  Identities=25%  Similarity=0.443  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQ---LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL  158 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kike---L~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeL  158 (473)
                      ++.+++.|+++...+.+....+|..++.   +..++..+.+++..++..+......+..+.-....+..++..+
T Consensus       330 lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l  403 (713)
T PF05622_consen  330 LKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL  403 (713)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566666666666666666655444   3444444444444444444444444333333333333333333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=95.98  E-value=2.9  Score=45.26  Aligned_cols=132  Identities=12%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  228 (473)
Q Consensus       150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L  228 (473)
                      .+.++|..++.++..+..+-.-+...    -.-+..|-+.-. .+.+++......+.++.+++.....+.....+++..|
T Consensus       163 aL~ekLk~~~een~~lr~k~~llk~E----t~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL  238 (596)
T KOG4360|consen  163 ALQEKLKPLEEENTQLRSKAMLLKTE----TLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL  238 (596)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555553322111    112334444444 4444444445555555555555555555555555555


Q ss_pred             HHHhHhHHHHHhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          229 TQMESVSKETIAGLSVDITQL-------RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       229 ~~ei~~~~e~L~~l~~e~~~L-------k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      ..++.++...+.-+.-+.+.+       +..-.++.++.+++.+...++-..++..+.+|+.+.
T Consensus       239 lsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  239 LSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555555555555544444444       444455555555666666666666666666665554

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.98  E-value=3.9  Score=48.86  Aligned_cols=21  Identities=24%  Similarity=0.148  Sum_probs=9.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhh
Q 011982          309 LIDKLITENIELVEKVNDLSV  329 (473)
Q Consensus       309 ~~~~l~~Ey~~L~~k~neL~~  329 (473)
                      .+..+.+.|..|..+++..+.
T Consensus       259 ~i~~~~~~N~~Ls~~L~~~t~  279 (1109)
T PRK10929        259 SIVAQFKINRELSQALNQQAQ  279 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.97  E-value=6.1  Score=48.48  Aligned_cols=38  Identities=13%  Similarity=0.260  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          103 IQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ  140 (473)
Q Consensus       103 ~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~e  140 (473)
                      ..+++.++..+..|..++......+..+...+..|..+
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK11281 hypothetical protein; Provisional

Probab=95.95  E-value=4.3  Score=48.64  Aligned_cols=41  Identities=17%  Similarity=0.058  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG  170 (473)
Q Consensus       130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~  170 (473)
                      ++..+..+...+..++..++.+..++..++..-+.....+.
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls  166 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY  166 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            44444444444444444444444444443333333333333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.93  E-value=2.4  Score=43.56  Aligned_cols=66  Identities=27%  Similarity=0.262  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           79 QHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR  144 (473)
Q Consensus        79 ~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~  144 (473)
                      +.+..+-+.+..+.+.++.+...+.++...+......+..+.......+..|+.=..+|+......
T Consensus        25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~l   90 (309)
T PF09728_consen   25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKL   90 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666666666666666676667777777777777766666666666555555544433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.90  E-value=3.8  Score=45.52  Aligned_cols=58  Identities=14%  Similarity=0.287  Sum_probs=36.9

Q ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          234 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       234 ~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ...+.+..+...+.....+...+.+....|+.++..-+..+..+...+....+.+...
T Consensus       376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~  433 (560)
T PF06160_consen  376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS  433 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445555555555555666666666666667777777777777777777777776555

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.87  E-value=2.2  Score=48.85  Aligned_cols=11  Identities=18%  Similarity=0.060  Sum_probs=6.9

Q ss_pred             cCCceeeecCC
Q 011982          407 YSGEIVQIPLD  417 (473)
Q Consensus       407 ~~gritf~PLn  417 (473)
                      .+.||..|=+|
T Consensus       574 ~g~rvLlID~D  584 (754)
T TIGR01005       574 GGKRALLIDAD  584 (754)
T ss_pred             CCCeEEEEeCC
Confidence            45567777665

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.87  E-value=5.8  Score=47.45  Aligned_cols=46  Identities=11%  Similarity=0.103  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      +..+-..+....+....+.++.......++.+...+.+.+.+++-.
T Consensus       267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l  312 (1109)
T PRK10929        267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL  312 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555666666777777788888888888888888888777777554

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.86  E-value=1.8  Score=41.47  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           97 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL  158 (473)
Q Consensus        97 ~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeL  158 (473)
                      .++..+..++..++..+...+++...+.+++..++....+=...+............+++.+
T Consensus         4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~   65 (205)
T KOG1003|consen    4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQ   65 (205)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34444555555555555555555555555555555444444444433333333333333333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=95.79  E-value=2.1  Score=41.69  Aligned_cols=101  Identities=11%  Similarity=0.102  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 011982           90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK----------------------  147 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk----------------------  147 (473)
                      .-+..+++=...+.+-+..++..+.++...+.........++.++..++..+..|+.+                      
T Consensus        17 ~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~   96 (219)
T TIGR02977        17 ALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQK   96 (219)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344444445556666666666666666666666666666666666666666666654                      


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982          148 ----EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  190 (473)
Q Consensus       148 ----e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE  190 (473)
                          ...+..++..+...+..+..++..++.++..++..++.+.-..
T Consensus        97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~  143 (219)
T TIGR02977        97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH  143 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2233444444444455555555555555555555444444333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=95.76  E-value=4.8  Score=45.62  Aligned_cols=138  Identities=20%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh--------h--chhchHHHHHHhhhhHH
Q 011982          245 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ---LSSDESKKLQHAT--------S--EQKDFSTQIEAAGALID  311 (473)
Q Consensus       245 e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~e---L~~ae~~l~~ae~--------~--~~~dMe~ql~~~~~~~~  311 (473)
                      -+.++-..+....+.|-.|..+...|...++.+...   +-.|...++....        |  .++=|..+|..-+    
T Consensus       565 l~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~L~~Er----  640 (1480)
T COG3096         565 LIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLERER----  640 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH----
Confidence            344555555666677777777777777777766542   2233333333311        1  5555663333211    


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc-cee
Q 011982          312 KLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG-ING  390 (473)
Q Consensus       312 ~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns-~vv  390 (473)
                      .+.-+-.+|-.+-+-|..+...++..-|-.-.+-..=--.+.||.  |+|+.+.-.+.+-+|.+|.=      |.+ |-.
T Consensus       641 e~t~~rD~l~~~r~~ld~qI~RLsqP~GseD~RL~~LAerfGGVL--LSEiYDDvtIeDAPYFSAlY------GPsRHaI  712 (1480)
T COG3096         641 EATVERDELGARKNALDEEIERLSQPGGSEDQRLNALAERFGGVL--LSEIYDDVTIEDAPYFSALY------GPSRHAI  712 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhccee--HHHHhccCccccchhHHHhh------Cccccee
Confidence            122233344444444444444444333322111100001134552  45555544475677988876      566 544


Q ss_pred             -ecCC
Q 011982          391 -VHAD  394 (473)
Q Consensus       391 -v~d~  394 (473)
                       |.|=
T Consensus       713 VV~DL  717 (1480)
T COG3096         713 VVPDL  717 (1480)
T ss_pred             eeccH
Confidence             4553

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.68  E-value=1.5  Score=39.29  Aligned_cols=6  Identities=17%  Similarity=-0.069  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 011982          244 VDITQL  249 (473)
Q Consensus       244 ~e~~~L  249 (473)
                      .++.-|
T Consensus       119 ~QN~lL  124 (132)
T PF07926_consen  119 EQNKLL  124 (132)
T ss_pred             HHHHHH
Confidence            333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.66  E-value=1.2  Score=44.59  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982          111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  190 (473)
Q Consensus       111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE  190 (473)
                      .+|.+|..+++.+......-.-.+..|+..+....++.+.-..++..|+.+...|..-...++.+...+        ..+
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKl--------shd   89 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKL--------SHD   89 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHh--------hHH
Confidence            467777777777777777777777777777666666666666666677777666666666444433332        233


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH----------HHHh--------chHHHHHHHHH
Q 011982          191 A-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK----------ETIA--------GLSVDITQLRM  251 (473)
Q Consensus       191 i-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~----------e~L~--------~l~~e~~~Lk~  251 (473)
                      + .=+..+..+...+.+.+..+..|+.++..+..+++-.......-.          ..+.        -....+.+|+.
T Consensus        90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~e  169 (307)
T PF10481_consen   90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQE  169 (307)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHH
Confidence            3 444555666666666666666666666666666655433322111          1111        12377889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 011982          252 QVVELEESRNNLLQENRQLKEN  273 (473)
Q Consensus       252 q~~eL~deRK~LwrEe~kL~~~  273 (473)
                      +|+.-.++||.|--|..-|...
T Consensus       170 kynkeveerkrle~e~k~lq~k  191 (307)
T PF10481_consen  170 KYNKEVEERKRLEAEVKALQAK  191 (307)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcc
Confidence            9999999999998888877743

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.64  E-value=2.1  Score=49.19  Aligned_cols=75  Identities=20%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL  137 (473)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL  137 (473)
                      ++.++.+.+.+..-..    +........+..++..++.++..+.-.++....+++.+..++......+..+..++..+
T Consensus       569 ~f~~~ss~e~E~~~~d----ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~  643 (769)
T PF05911_consen  569 NFDGDSSSEAEINSED----EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA  643 (769)
T ss_pred             hhhhcccccccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556555555443333    22233333444555555555555544444444444444444444444444444444333

The function of this family is unknown.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=95.54  E-value=3.2  Score=44.13  Aligned_cols=30  Identities=10%  Similarity=0.054  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          123 YKEKVATLEETIQQLQRQNDLRMQKEATLE  152 (473)
Q Consensus       123 ~~qk~~~LE~eLkeLq~eI~~~eqke~~le  152 (473)
                      .......++.++..++.++...+.++..+.
T Consensus       169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr  198 (444)
T TIGR03017       169 AQKAALWFVQQIAALREDLARAQSKLSAYQ  198 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555554444444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PLN02939 transferase, transferring glycosyl groups

Probab=95.52  E-value=2.4  Score=49.77  Aligned_cols=62  Identities=13%  Similarity=0.130  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDL  143 (473)
Q Consensus        81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~  143 (473)
                      -+|.|... .=|+..+..+-.+.+.+...=..+..+-.+.+.+..++..|+..+.+-...+.-
T Consensus       127 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (977)
T PLN02939        127 DFQLEDLV-GMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKL  188 (977)
T ss_pred             cccHHHHH-HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Confidence            34554443 445666666666666666666666666666666666666666666665444443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=95.45  E-value=1.1  Score=38.90  Aligned_cols=70  Identities=14%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          158 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  227 (473)
Q Consensus       158 Le~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~  227 (473)
                      +.....++..++..++..+...|..++.|....-.|.+.+..++.+..+..+.+.+|+.+|..+...++.
T Consensus         7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen    7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555666666655554555555544444444444444444444444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.43  E-value=7.5  Score=45.66  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 011982          269 QLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       269 kL~~~i~~L~~eL~~ae~~l  288 (473)
                      +|+..+..+...+..+....
T Consensus       498 ~l~~e~~~l~~~l~~~~~~~  517 (908)
T COG0419         498 ELREEIEELEKELRELEEEL  517 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33355555555555554444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=95.34  E-value=1.5  Score=37.99  Aligned_cols=74  Identities=18%  Similarity=0.233  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982          182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE  255 (473)
Q Consensus       182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e  255 (473)
                      +|..+..+...+...+..+...+...+.....|..+.+.|..-+..|..+-.+....+.+++..+.++...++.
T Consensus         3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen    3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555556666666666666666666666666666666666666666666666666666666666555554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.29  E-value=8  Score=45.19  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           92 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEE  153 (473)
Q Consensus        92 i~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~  153 (473)
                      +..+..++......++.++.++......++....+...+..+...+...+..+++....++.
T Consensus       638 ~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~  699 (1072)
T KOG0979|consen  638 IQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN  699 (1072)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444444444444444444444433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.19  E-value=3.8  Score=44.15  Aligned_cols=29  Identities=14%  Similarity=0.288  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          114 QQLQNECDLYKEKVATLEETIQQLQRQND  142 (473)
Q Consensus       114 keL~eei~~~~qk~~~LE~eLkeLq~eI~  142 (473)
                      ..+..++.....++..+..++..|+..+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        93 GNEENQKQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555566555555555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.15  E-value=3.3  Score=39.95  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=46.8

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHH
Q 011982          235 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI  314 (473)
Q Consensus       235 ~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~  314 (473)
                      ....+..+..++..++-+...|......+.+|+..|.+.....-.+++.--.--.-.       |+.+++.+...++.-.
T Consensus        91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l-------LEkKl~~l~~~lE~ke  163 (201)
T PF13851_consen   91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL-------LEKKLQALSEQLEKKE  163 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            445555556666666666666666666666666666666666666655544444444       5555555555555555


Q ss_pred             HHHHHHHH
Q 011982          315 TENIELVE  322 (473)
Q Consensus       315 ~Ey~~L~~  322 (473)
                      .+-.+++.
T Consensus       164 aqL~evl~  171 (201)
T PF13851_consen  164 AQLNEVLA  171 (201)
T ss_pred             HHHHHHHH
Confidence            54444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.15  E-value=9  Score=44.99  Aligned_cols=12  Identities=17%  Similarity=0.290  Sum_probs=4.8

Q ss_pred             cchhHHHHHHhh
Q 011982          449 APFRLVSFVAKY  460 (473)
Q Consensus       449 ~~f~~~~~~~~~  460 (473)
                      +-+=+||-|=-+
T Consensus       874 ~qiiIISH~eel  885 (908)
T COG0419         874 RQIIIISHVEEL  885 (908)
T ss_pred             CeEEEEeChHHH
Confidence            333344444333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.06  E-value=0.47  Score=48.88  Aligned_cols=68  Identities=21%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  286 (473)
Q Consensus       219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~  286 (473)
                      ..+..++..+..+...+.+++..++.+...+..++..++.+...+.+++.+.|+....+..++.....
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~  113 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE  113 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333433444444444444444444444444444444444444444444444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.01  E-value=1.2  Score=39.64  Aligned_cols=41  Identities=22%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      .+...|..+..++..++.++..+......+..+|-.+....
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.87  E-value=7.6  Score=44.51  Aligned_cols=51  Identities=22%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNE-RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQ  138 (473)
Q Consensus        88 ~~~ei~qlE~E-~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq  138 (473)
                      |....+.+.++ +..+......++..+..|+.+.+.....+..+..+++.|+
T Consensus       541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~  592 (717)
T PF10168_consen  541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR  592 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444 2444445555555555555555555555555544444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.84  E-value=5.6  Score=41.01  Aligned_cols=46  Identities=24%  Similarity=0.252  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          243 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       243 ~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      ..++...+.++.++++++..+...........+.++.++..+++.+
T Consensus       217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=7.6  Score=42.52  Aligned_cols=120  Identities=11%  Similarity=0.064  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH
Q 011982          172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  251 (473)
Q Consensus       172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~  251 (473)
                      ..+.+..|+.++..+-.+...++..+......+-.++....+|.+.+..+++++.++.--++.-.+.+..+..++..+..
T Consensus       329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~  408 (654)
T KOG4809|consen  329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN  408 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777766666778888888888888899999999999999999999988888888888888888776665


Q ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          252 QVVELE------ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       252 q~~eL~------deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      -.....      |.++.|-++.............+++..-..+..+
T Consensus       409 ~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev  454 (654)
T KOG4809|consen  409 IEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV  454 (654)
T ss_pred             hhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555443      7777777777777777777666666666655555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.83  E-value=5.8  Score=45.42  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           78 RQHLLQREAILEET-VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK  156 (473)
Q Consensus        78 ~~~~~q~e~~~~~e-i~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe  156 (473)
                      .+.+.+.-..|.++ +..++.-+..+.++...+.....+-..++....+.+..+...-..|.++++....+.+.+..+++
T Consensus       538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~  617 (717)
T PF10168_consen  538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD  617 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444 45555555555566666666666666666666666666666666665555555555555555555


Q ss_pred             HHHHH
Q 011982          157 QLRNQ  161 (473)
Q Consensus       157 eLe~e  161 (473)
                      .+-..
T Consensus       618 ~vl~~  622 (717)
T PF10168_consen  618 RVLQL  622 (717)
T ss_pred             HHHHH
Confidence            44433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PLN02939 transferase, transferring glycosyl groups

Probab=94.79  E-value=11  Score=44.31  Aligned_cols=61  Identities=20%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hchhchHHHHHHhhhhHHHHHHHHHHHHHh
Q 011982          263 LLQENRQLKENVSSLRSQLSSDESKKLQHAT-----SEQKDFSTQIEAAGALIDKLITENIELVEK  323 (473)
Q Consensus       263 LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k  323 (473)
                      ...+.+.|+..+++|+..|..+.-..-+++.     .+++-++..+++-...|...++=|++..+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (977)
T PLN02939        322 VLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKE  387 (977)
T ss_pred             HhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555554433322211     044445556666666666666666665553

>PF13514 AAA_27: AAA domain

Probab=94.73  E-value=13  Score=44.71  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          114 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK  147 (473)
Q Consensus       114 keL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk  147 (473)
                      ..+..++..........+..+..++..+..|...
T Consensus       676 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1111)
T PF13514_consen  676 EQLEEELQQLEQELEEAEAELQEAQEALEEWQEE  709 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=94.62  E-value=14  Score=44.57  Aligned_cols=75  Identities=20%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN  162 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei  162 (473)
                      .-+..+....+.....+.+..+....+.....+....+....++..+..|+..+.....+...+.+.+..+....
T Consensus       841 e~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l  915 (1294)
T KOG0962|consen  841 EIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVEL  915 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhH
Confidence            334444444555556666666667777777777777777777788888888777777776665555554443333

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=7.7  Score=41.57  Aligned_cols=150  Identities=18%  Similarity=0.157  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM--ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE  272 (473)
Q Consensus       195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~e--i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~  272 (473)
                      ..|..+...+.++..++.+-++....|.++++.+-..  .-.+..+|.++-+-+......+..+.++++.|..+...+..
T Consensus       345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se  424 (521)
T KOG1937|consen  345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE  424 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566666666666666666666666665432  22455777777777888888888888888888888887766


Q ss_pred             HHHHHHHHHHHHHH---HHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhh
Q 011982          273 NVSSLRSQLSSDES---KKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIG  345 (473)
Q Consensus       273 ~i~~L~~eL~~ae~---~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~  345 (473)
                      .+++-=.-+..+--   ....+ .+..=.+=++|..+|..+-.-+.+.-.++..+-+|..|+.--..-+-+.++..
T Consensus       425 ~L~Rsfavtdellf~sakhddh-vR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEk  499 (521)
T KOG1937|consen  425 ALNRSFAVTDELLFMSAKHDDH-VRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEK  499 (521)
T ss_pred             HHhhhHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHH
Confidence            65544333332110   00000 00111133567777777777777777777777777776665444444444444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.55  E-value=6.5  Score=40.46  Aligned_cols=211  Identities=13%  Similarity=0.200  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 011982           79 QHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ-KEATLEETIKQ  157 (473)
Q Consensus        79 ~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq-ke~~le~eLee  157 (473)
                      .....+-..+..+..++..++.........||.=+.+|+................-..-+.++...-+ .+..+...+++
T Consensus        46 ~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee  125 (309)
T PF09728_consen   46 KKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEE  125 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555678888888888888888888888888888877777766555554444444444444322 23344444433


Q ss_pred             HHHHHHHHHHHhhchHHHHHHH-------HHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 011982          158 LRNQNDLHIQREGGLEMNIANL-------QSEKEFWLQK---EA-ALEQKISQLRDESAALNMKRASLEE-------RLK  219 (473)
Q Consensus       158 Le~ei~~L~~kl~~le~rl~~L-------K~ERD~wLqk---Ei-~Le~~I~~l~~el~~L~~ei~~Lee-------eie  219 (473)
                      .......+......+..++..|       ..-.+..++.   ++ -+.+.+................+..       .+.
T Consensus       126 ~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~  205 (309)
T PF09728_consen  126 QSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQ  205 (309)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333       1111111111   11 2334444444444444455555555       777


Q ss_pred             HHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          220 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       220 ~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      .+...-..|+.+++.+.+....+++.++....-+.....++..+-....+|...-..+..-..+....|-
T Consensus       206 ~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~  275 (309)
T PF09728_consen  206 TLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI  275 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            7777777777777777777777777766666666666666655555555555555555555555555553

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=94.54  E-value=6.8  Score=44.22  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhch
Q 011982          174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL  242 (473)
Q Consensus       174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l  242 (473)
                      +++..-..||-.-+.....|...+...++.+..+....+.+...++.|..+++.|..........+...
T Consensus       202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~  270 (916)
T KOG0249|consen  202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDH  270 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcch
Confidence            334333667777777766777777777777777777777777777777777777774333333444333

>TIGR00634 recN DNA repair protein RecN

Probab=94.50  E-value=9.7  Score=42.24  Aligned_cols=12  Identities=17%  Similarity=0.357  Sum_probs=7.4

Q ss_pred             HHHHhhcccccc
Q 011982          455 SFVAKYVSGADL  466 (473)
Q Consensus       455 ~~~~~~~~~~~~  466 (473)
                      -=+||-.||.+.
T Consensus       538 ~EiArml~G~~~  549 (563)
T TIGR00634       538 AELARMLAGLEK  549 (563)
T ss_pred             HHHHHHhCCCCc
Confidence            346777777653

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.47  E-value=1.5  Score=43.32  Aligned_cols=72  Identities=17%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          216 ERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  287 (473)
Q Consensus       216 eeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~  287 (473)
                      .-|..+..+++.|..+...|-++|..+...++.|..-+.++..+|.........+..++..|.++++.+...
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555666666666666666666666666666666666666666666666666666555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=94.39  E-value=16  Score=44.19  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          251 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       251 ~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      +.+.-|...+..+-.+...+-.....+.+.+..+++.|.
T Consensus      1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444444444444444444444

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.30  E-value=2.1  Score=42.25  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          250 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       250 k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      ...++.|...-+.+|.+..+....+..+..++..+.
T Consensus        59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk   94 (230)
T PF10146_consen   59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK   94 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.23  E-value=3  Score=37.09  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982          208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE  255 (473)
Q Consensus       208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e  255 (473)
                      ..++..|+.++..++...+.+-.-+..-.+.+..|+..+.+++.-+..
T Consensus        67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE  114 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555554444444444445555555555555444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=94.16  E-value=7  Score=39.22  Aligned_cols=194  Identities=18%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          123 YKEKVATLEETIQQLQRQNDLRMQK----EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS  198 (473)
Q Consensus       123 ~~qk~~~LE~eLkeLq~eI~~~eqk----e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~  198 (473)
                      +.+....|...+..|...|.+.+..    ...+-.+.+-+...++-+.....   .++.+.+++..+|-.+.        
T Consensus        11 l~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~---~~l~~ak~eLqe~eek~--------   79 (258)
T PF15397_consen   11 LKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNH---KQLQQAKAELQEWEEKE--------   79 (258)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccCh---HHHHHHHHHHHHHHHHH--------
Confidence            3344445555555555555555443    22344444445555554444433   24555577777776655        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH----HHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011982          199 QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK----ETIAGLSVDITQLRM-QVVELEESRNNLLQENRQLKEN  273 (473)
Q Consensus       199 ~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~----e~L~~l~~e~~~Lk~-q~~eL~deRK~LwrEe~kL~~~  273 (473)
                        ...+..|..++..+...|.....++..|....+--.    -.|..|...+..++. +-.++.+-......+..+|.+.
T Consensus        80 --e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~  157 (258)
T PF15397_consen   80 --ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRK  157 (258)
T ss_pred             --HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              334456666666666677777777777666443110    245555555544432 2222222222233333444443


Q ss_pred             HHHHHHHHHH-HHHHHHh-hhh------hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982          274 VSSLRSQLSS-DESKKLQ-HAT------SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  329 (473)
Q Consensus       274 i~~L~~eL~~-ae~~l~~-ae~------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~  329 (473)
                      ++.-...+-. +-...-. ...      ...-.|...|...+-.|..+..+...|...|..|..
T Consensus       158 ~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~  221 (258)
T PF15397_consen  158 IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA  221 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333322 1111111 101      144456666666666666666666666666555554

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.00  E-value=11  Score=40.79  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           85 EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR  144 (473)
Q Consensus        85 e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~  144 (473)
                      ...+.+..+.+..+...+......++.+....-..+..+.......|.+|+.|+..++..
T Consensus       297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L  356 (622)
T COG5185         297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL  356 (622)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            333444444444444444444444444444444444433333344444444444333333

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=93.92  E-value=4.7  Score=43.73  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011982          141 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-----QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASL  214 (473)
Q Consensus       141 I~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-----K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~L  214 (473)
                      .++...++..+..+...++.+..-++.+-......-.++     |..||.  +..+ .+.+.|..+..++....++...|
T Consensus       161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~Kelrdt--N~q~~s~~eel~~kt~el~~q~Ee~skL  238 (596)
T KOG4360|consen  161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDT--NTQARSGQEELQSKTKELSRQQEENSKL  238 (596)
T ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555556666666666666666644444333333     444443  3444 66677777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          215 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  278 (473)
Q Consensus       215 eeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~  278 (473)
                      .+.|..++.+|-.+..+.+.+..-|......-.++..+..+++|+.-+......+-...+..|+
T Consensus       239 lsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  239 LSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7777777777777777777777666666666666666666666666666555555555555443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.86  E-value=5  Score=36.52  Aligned_cols=9  Identities=33%  Similarity=0.287  Sum_probs=3.6

Q ss_pred             HHHHHHHHh
Q 011982          315 TENIELVEK  323 (473)
Q Consensus       315 ~Ey~~L~~k  323 (473)
                      .||..|.++
T Consensus       140 ~E~~kLk~r  148 (151)
T PF11559_consen  140 REIEKLKER  148 (151)
T ss_pred             HHHHHHHHH
Confidence            334444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.82  E-value=9  Score=39.32  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  278 (473)
Q Consensus       213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~  278 (473)
                      ++-.++..-..+|..|..++....+.....+.++..|..++..++...+.+--|..+|...+...+
T Consensus       203 dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk  268 (306)
T PF04849_consen  203 DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK  268 (306)
T ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344455555555555555555555555555566666666666666666655555555555544443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=93.81  E-value=7.9  Score=38.65  Aligned_cols=40  Identities=10%  Similarity=-0.108  Sum_probs=22.1

Q ss_pred             Ccccccccc-c-cCCCCCCCccccchHHHHHHH----------HHHHHHHHH
Q 011982           50 PADIQNVQV-D-ADRHQSNGAESANLAEAERQH----------LLQREAILE   89 (473)
Q Consensus        50 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~----------~~q~e~~~~   89 (473)
                      +|-+--++| + ..+|.|+-+..-.+.-.++.+          |.|+|+...
T Consensus        45 ~A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a~~elq~~ks~~Q~e~~v~   96 (330)
T KOG2991|consen   45 VAPGVRTGMILSMTNEEPLPKKVRLSEQDFKVMARDELQLRKSWKQYEAYVQ   96 (330)
T ss_pred             CCCCCccchhhhhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444 4 567778877666555554433          566666543

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=93.79  E-value=9.2  Score=39.33  Aligned_cols=104  Identities=14%  Similarity=0.292  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH-------HHHHHHHHH
Q 011982          180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS-------VDITQLRMQ  252 (473)
Q Consensus       180 K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~-------~e~~~Lk~q  252 (473)
                      |.+..-|..+...++..+..-.......+.++..+...|..++.+--.|+..-++-...+=.|.       ..+..++.+
T Consensus       221 K~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~k  300 (391)
T KOG1850|consen  221 KEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKK  300 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3343333333334444444444455555555555555555555555555443333222222222       223555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          253 VVELEESRNNLLQENRQLKENVSSLRSQLSS  283 (473)
Q Consensus       253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~  283 (473)
                      +..|+.-.+.|..++..|...+..+...+..
T Consensus       301 iq~LekLcRALq~ernel~~~~~~~e~~v~~  331 (391)
T KOG1850|consen  301 IQRLEKLCRALQTERNELNKKLEDLEAQVSA  331 (391)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence            6666666666666666666666665555544

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.77  E-value=7.6  Score=38.63  Aligned_cols=117  Identities=15%  Similarity=0.222  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH
Q 011982          172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  251 (473)
Q Consensus       172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~  251 (473)
                      ++.++.+|+.+-..+.......+..+..+......+..+...|+.....++..+..|..+.....++-..|..++..+..
T Consensus        10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~   89 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA   89 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555444444444444444555555555556666666666666666666666666665555666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       252 q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      .+..|...+...-.|-..|...+...+..+..+...+
T Consensus        90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L  126 (246)
T PF00769_consen   90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL  126 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777776666677767666666666666666665

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.72  E-value=4.4  Score=43.35  Aligned_cols=90  Identities=14%  Similarity=0.211  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 011982           94 HLRNERESHIQKEATLEG-TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL  172 (473)
Q Consensus        94 qlE~E~~~l~q~~a~LE~-kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~l  172 (473)
                      |++..+....+.+..++. +++..+............++.....++..-...+.+...+..+++.+.+++..++      
T Consensus       329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~------  402 (493)
T KOG0804|consen  329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER------  402 (493)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            344444444444444444 4444455555555555555555555555555555555555555555544444433      


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011982          173 EMNIANLQSEKEFWLQKE  190 (473)
Q Consensus       173 e~rl~~LK~ERD~wLqkE  190 (473)
                       +.-..+.+.-+.|..+-
T Consensus       403 -E~n~~l~knq~vw~~kl  419 (493)
T KOG0804|consen  403 -EENKKLIKNQDVWRGKL  419 (493)
T ss_pred             -HHHHHHHhhHHHHHHHH
Confidence             12223455555665554

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=93.64  E-value=13  Score=40.70  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          210 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       210 ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      ++.++.+.+..+-..++.-..--..+.+.+..+...+...........+....|..++.+-+.....+...+....+-+.
T Consensus       355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me  434 (570)
T COG4477         355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME  434 (570)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444555555555555555555555556666666666666666666666555554


Q ss_pred             hhh-------------h-h--------chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982          290 QHA-------------T-S--------EQKDFSTQIEAAGALIDKLITENIELVEKVNDL  327 (473)
Q Consensus       290 ~ae-------------~-~--------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL  327 (473)
                      .+.             + +        ++.+.+=-+++++.....++..-..|....+++
T Consensus       435 k~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~  494 (570)
T COG4477         435 KSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEV  494 (570)
T ss_pred             HcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            441             0 0        333333334555566655555555555544443

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.59  E-value=8.6  Score=38.33  Aligned_cols=69  Identities=23%  Similarity=0.294  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           84 REAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE  152 (473)
Q Consensus        84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le  152 (473)
                      .-..++..+..+..+...+..+....-.+...+.............+...+..+...|.....+...+.
T Consensus        46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~  114 (264)
T PF06008_consen   46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN  114 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344456667777777777777777777777777777777777777777777777777777766654443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=93.44  E-value=6.8  Score=36.68  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          253 VVELEESRNNLLQENRQLKENVSSL  277 (473)
Q Consensus       253 ~~eL~deRK~LwrEe~kL~~~i~~L  277 (473)
                      +....+....|+.....|.+.+..|
T Consensus       147 y~~~~~~~~~l~~~i~~l~rk~~~l  171 (177)
T PF13870_consen  147 YDKTKEEVEELRKEIKELERKVEIL  171 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.28  E-value=1.4  Score=42.72  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       212 ~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      ..++.++..++.+++.+..+   +.....+++..+..+..++.+|..+...|..+...+....+.|+.+++...+.+
T Consensus        96 p~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884         96 PDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444332   234444455555556666666666666666666666666666666666655544

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.22  E-value=2.4  Score=34.26  Aligned_cols=66  Identities=17%  Similarity=0.256  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           91 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK  156 (473)
Q Consensus        91 ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe  156 (473)
                      -..+|+..+..++..++.|+..+..|+.+...+......+..++..|+.+...|...+..+-.+|+
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456777778888888888888888888888888888888888888887777777777666655554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.22  E-value=20  Score=41.43  Aligned_cols=128  Identities=16%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH----HHHHHHHHHHHHHHhhchHHHHHHHH
Q 011982          113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA--------TLEET----IKQLRNQNDLHIQREGGLEMNIANLQ  180 (473)
Q Consensus       113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~--------~le~e----LeeLe~ei~~L~~kl~~le~rl~~LK  180 (473)
                      +-.|+.+++...++...++.++..|...+.....++-        .+...    -.+..+....|..++.++..++....
T Consensus        26 ~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~  105 (769)
T PF05911_consen   26 AASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESA  105 (769)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555554444444433211        11111    12233333344455555555555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
Q 011982          181 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA  240 (473)
Q Consensus       181 ~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~  240 (473)
                      .|...+-+.-..-.+-|..+.........++..|...++..+.+..+|+-++.-+..+|.
T Consensus       106 ~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele  165 (769)
T PF05911_consen  106 AENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE  165 (769)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555554444445555555555555555555555555555555555555554444443

The function of this family is unknown.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=93.19  E-value=11  Score=42.58  Aligned_cols=37  Identities=19%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          242 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  278 (473)
Q Consensus       242 l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~  278 (473)
                      |..+...++.++.++.-.++.|...+..|+..+..|+
T Consensus       221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3344455566666666666666666666666665555

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=92.88  E-value=10  Score=37.27  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           82 LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK  147 (473)
Q Consensus        82 ~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk  147 (473)
                      ...-+.+..-+..+++=.+.+.+.+..++..+.++...+.........++.++..++.....|+.+
T Consensus         9 ~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~   74 (225)
T COG1842           9 DLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK   74 (225)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677777888888899999999999999999999999999999999999999999988876

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=92.84  E-value=8.1  Score=39.68  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=27.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhh
Q 011982          308 ALIDKLITENIELVEKVNDLSVKLDRQSVAAGL  340 (473)
Q Consensus       308 ~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl  340 (473)
                      .++.++..|...|...|-.|..||++.-.....
T Consensus       219 vRLkKl~~eke~L~~qv~klk~qLee~~~~~~~  251 (302)
T PF09738_consen  219 VRLKKLADEKEELLEQVRKLKLQLEERQSEGRR  251 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            348899999999999999999999877655543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.78  E-value=8.1  Score=38.24  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           75 EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET  154 (473)
Q Consensus        75 ~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e  154 (473)
                      ...-+.+.+..+....++.++..+...+......++.++..|..........++..+.++..|+.+|.....-...+.+-
T Consensus        27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~  106 (251)
T PF11932_consen   27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL  106 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455577777888888888888888888888888888888888888888888888888888888877777776666665


Q ss_pred             HHHHHHHHHH
Q 011982          155 IKQLRNQNDL  164 (473)
Q Consensus       155 LeeLe~ei~~  164 (473)
                      +...-..+..
T Consensus       107 m~~m~~~L~~  116 (251)
T PF11932_consen  107 MEQMIDELEQ  116 (251)
T ss_pred             HHHHHHHHHH
Confidence            5554444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=92.75  E-value=26  Score=41.51  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRS  279 (473)
Q Consensus       246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~  279 (473)
                      ...++..+...++....||.....+.+..+.-+.
T Consensus       534 a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~  567 (1041)
T KOG0243|consen  534 ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQE  567 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHH
Confidence            4455555555555555555555554444333333

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=92.75  E-value=12  Score=37.60  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982          111 GTVQQLQNECDLYKEKVATLEET----IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL  179 (473)
Q Consensus       111 ~kikeL~eei~~~~qk~~~LE~e----LkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L  179 (473)
                      ..+..|-.+.+.+......++..    +...+.++.+|+.+   .+..+..|+.+++.+.+++..++..+..|
T Consensus        38 ~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L  107 (258)
T PF15397_consen   38 LKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFL  107 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777776654    44445555555443   45566667777777777776666666555

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.71  E-value=5.7  Score=38.38  Aligned_cols=37  Identities=14%  Similarity=0.256  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          128 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  164 (473)
Q Consensus       128 ~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~  164 (473)
                      .-|..++++.+.++......+..+...+.+.+.....
T Consensus        13 sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~   49 (202)
T PF06818_consen   13 SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRN   49 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444444444444444444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=92.69  E-value=19  Score=40.16  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011982          104 QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK-------EATLEETIKQLRNQNDLHIQREGGLEMNI  176 (473)
Q Consensus       104 q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk-------e~~le~eLeeLe~ei~~L~~kl~~le~rl  176 (473)
                      .+++.|+.+...|.-+..-+.+++..--+.|..|+.-|..+..+       +..-.-.+..|+.+.-.|.++..+++-++
T Consensus       111 erLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkl  190 (861)
T KOG1899|consen  111 ERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKL  190 (861)
T ss_pred             HHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH
Confidence            33444443333344444444444444444444444444444333       22222223455666666666666665555


Q ss_pred             HHHH
Q 011982          177 ANLQ  180 (473)
Q Consensus       177 ~~LK  180 (473)
                      ..+.
T Consensus       191 talE  194 (861)
T KOG1899|consen  191 TALE  194 (861)
T ss_pred             HHHH
Confidence            5553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=92.60  E-value=6.5  Score=41.68  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          126 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR  201 (473)
Q Consensus       126 k~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~  201 (473)
                      +....+..+..++.++...+++...+..++.-++.+.+.+.++++..+..+..||.|........+..+.....+.
T Consensus         7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t   82 (459)
T KOG0288|consen    7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLT   82 (459)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555556666666666666666666666666666666666666666666666665555544444444333

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.52  E-value=17  Score=38.73  Aligned_cols=19  Identities=11%  Similarity=0.223  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011982          270 LKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       270 L~~~i~~L~~eL~~ae~~l  288 (473)
                      |.+..+..+.-+..+-..+
T Consensus       347 L~r~~~~~~~~y~~ll~r~  365 (444)
T TIGR03017       347 LQRDVENAQRAYDAAMQRY  365 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.51  E-value=2.2  Score=35.04  Aligned_cols=69  Identities=22%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  287 (473)
Q Consensus       219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~  287 (473)
                      +.|+..|...-+.|.-+.-+|..+.+....+..+...+...|..|.++..+|+.....-+..|..+-..
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555666666666666666666666666677777777777776666666665554443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=92.44  E-value=14  Score=37.70  Aligned_cols=34  Identities=18%  Similarity=0.092  Sum_probs=25.6

Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011982          299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD  332 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~  332 (473)
                      -+.|.--+...+..|+.||..|.+++-.....+-
T Consensus       269 ~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEKa  302 (305)
T PF14915_consen  269 SEKQVLLLEERNKELINECNHLKERLYQYEKEKA  302 (305)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555677888999999999998877766554

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.43  E-value=8.3  Score=35.06  Aligned_cols=60  Identities=20%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  164 (473)
Q Consensus       105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~  164 (473)
                      ....+..++..+..++.........++..+..++.++..++.++..+...+..+......
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555555555554555444444444444444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.39  E-value=2.5  Score=46.72  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHH
Q 011982          138 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL--QSEKEFWLQKE  190 (473)
Q Consensus       138 q~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L--K~ERD~wLqkE  190 (473)
                      ...+.......+.++.++..|+..+.++...+..|+.++..|  ...-+.|...+
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~re  475 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE  475 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            333333333344444444444444444444444444444444  22233444444

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.16  E-value=16  Score=37.62  Aligned_cols=33  Identities=12%  Similarity=0.147  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011982          261 NNLLQENRQLKENVSSLRSQLSSDESKKLQHAT  293 (473)
Q Consensus       261 K~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~  293 (473)
                      +.+..+...|++.++.-......+.+.++.+++
T Consensus       264 k~ireEN~rLqr~L~~E~erreal~R~lsesEs  296 (310)
T PF09755_consen  264 KEIREENRRLQRKLQREVERREALCRHLSESES  296 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666665555556666655543

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.00  E-value=7.2  Score=41.02  Aligned_cols=74  Identities=7%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011982          100 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI  176 (473)
Q Consensus       100 ~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl  176 (473)
                      +.|...+.++..-...+..........+..+..++...-.+|.+.++-   +..++..+-.+......++...+.++
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y  289 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKY  289 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444555554444444444333   22333333333333333444333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.63  E-value=15  Score=36.33  Aligned_cols=51  Identities=22%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      ..+.|-.....+..++..+..++..+......++..+...+.++..|..++
T Consensus        43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi   93 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI   93 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444444433433333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=91.55  E-value=17  Score=36.74  Aligned_cols=200  Identities=15%  Similarity=0.186  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           84 REAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  163 (473)
Q Consensus        84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~  163 (473)
                      ..+.+..+-..+...+......+..|-.++.+...+...+.-....++..+..++.+.+..-.=--....   +.-.+.+
T Consensus        10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~---e~gterq   86 (389)
T KOG4687|consen   10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKI---EFGTERQ   86 (389)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchh---hccchhh
Confidence            4455555555666666666666666666666666666666666666666665555544433221000000   1111112


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982          164 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS  243 (473)
Q Consensus       164 ~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~  243 (473)
                      .|...+..++..-.+|.-+|..++++..+|..+...++....+...++..--.+-..-.++-=+|+-...+.-....+++
T Consensus        87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLk  166 (389)
T KOG4687|consen   87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLK  166 (389)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHH
Confidence            22222333333333456666677766667777777666666666666555444444444444445555556666677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          244 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  286 (473)
Q Consensus       244 ~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~  286 (473)
                      .....|-..+..+.+...+|.-|+........+|..+|.-+-+
T Consensus       167 ak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLn  209 (389)
T KOG4687|consen  167 AKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALN  209 (389)
T ss_pred             HHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence            7777777778888888888888888888999999888876543

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.53  E-value=22  Score=38.02  Aligned_cols=59  Identities=20%  Similarity=0.148  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 011982          204 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN  262 (473)
Q Consensus       204 l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~  262 (473)
                      +..+++.+..|+.+-.++...+.-|....+.+.+....+...+..+..++-..++.|+.
T Consensus       299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r  357 (502)
T KOG0982|consen  299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR  357 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666655555555555555566665555555555443

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=91.49  E-value=19  Score=37.15  Aligned_cols=106  Identities=15%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h----chhc
Q 011982          225 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT--S----EQKD  298 (473)
Q Consensus       225 I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~--~----~~~d  298 (473)
                      --.|..++..+-+...+++..+.....-.+...++...+-....+|..+--.-+.-+.++...|-.+..  +    .++.
T Consensus       217 e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~  296 (391)
T KOG1850|consen  217 EGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYET  296 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH
Confidence            334444444455555555555555555555555555555555555555555555555555555533311  1    6777


Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982          299 FSTQIEAAGALIDKLITENIELVEKVNDLSVK  330 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~  330 (473)
                      ++.+|+.+--.-..|..|-++|..++..|.++
T Consensus       297 lq~kiq~LekLcRALq~ernel~~~~~~~e~~  328 (391)
T KOG1850|consen  297 LQKKIQRLEKLCRALQTERNELNKKLEDLEAQ  328 (391)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHhcc
Confidence            88888888888888888888888888777763

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=91.44  E-value=38  Score=40.60  Aligned_cols=6  Identities=0%  Similarity=-0.114  Sum_probs=2.2

Q ss_pred             cccccc
Q 011982          357 EPMSES  362 (473)
Q Consensus       357 g~l~el  362 (473)
                      +.|+++
T Consensus       880 ~~L~~l  885 (1047)
T PRK10246        880 GYLNSL  885 (1047)
T ss_pred             HHHHHH
Confidence            333333

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=91.41  E-value=20  Score=40.86  Aligned_cols=11  Identities=36%  Similarity=0.335  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 011982          258 ESRNNLLQENR  268 (473)
Q Consensus       258 deRK~LwrEe~  268 (473)
                      .+|+.|+.+..
T Consensus       300 ~~r~kL~N~i~  310 (670)
T KOG0239|consen  300 EERRKLHNEIL  310 (670)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=91.32  E-value=16  Score=35.95  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           93 KHLRNERESHIQKEATLEGTVQQLQNECDLY  123 (473)
Q Consensus        93 ~qlE~E~~~l~q~~a~LE~kikeL~eei~~~  123 (473)
                      .....+...+.+.+..+-..++.+..++...
T Consensus        34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l   64 (240)
T PF12795_consen   34 KKQKKRAAEYQKQIDQAPKEIRELQKELEAL   64 (240)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            3333334444444444444444444444433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=91.07  E-value=17  Score=35.82  Aligned_cols=12  Identities=33%  Similarity=0.603  Sum_probs=5.8

Q ss_pred             hchHHHHHHhhh
Q 011982          297 KDFSTQIEAAGA  308 (473)
Q Consensus       297 ~dMe~ql~~~~~  308 (473)
                      .+++.++.++|.
T Consensus       194 ~dl~~e~a~~~~  205 (225)
T COG1842         194 DDLDKEFAQAGA  205 (225)
T ss_pred             ccHHHHHHHhcc
Confidence            445555555444

>PRK10869 recombination and repair protein; Provisional

Probab=91.07  E-value=29  Score=38.57  Aligned_cols=43  Identities=16%  Similarity=0.078  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL  137 (473)
Q Consensus        95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL  137 (473)
                      +-.+.+.+-+....+...+.++........+.+..++-++++|
T Consensus       155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei  197 (553)
T PRK10869        155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL  197 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555555555555555555555555555544

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=90.90  E-value=9.7  Score=35.86  Aligned_cols=99  Identities=10%  Similarity=0.146  Sum_probs=59.3

Q ss_pred             HHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhHHHHHhchHHHHHH
Q 011982          175 NIANLQS---EKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEER--LKLLEADKDSWTQMESVSKETIAGLSVDITQ  248 (473)
Q Consensus       175 rl~~LK~---ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leee--ie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~  248 (473)
                      +.++|..   +-+.-|...| .+++.+..+.........++..|.+-  +.+++++|++|.++..+..++|..+.+..+.
T Consensus        69 ~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~  148 (201)
T KOG4603|consen   69 DQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNH  148 (201)
T ss_pred             cHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5566633   5555555665 66666666666666666666666553  4566677777777777777777777655432


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          249 L----RMQVVELEESRNNLLQENRQLKEN  273 (473)
Q Consensus       249 L----k~q~~eL~deRK~LwrEe~kL~~~  273 (473)
                      .    +.++...-...=+-||.+.+.-+.
T Consensus       149 vtpedk~~v~~~y~~~~~~wrk~krmf~e  177 (201)
T KOG4603|consen  149 VTPEDKEQVYREYQKYCKEWRKRKRMFRE  177 (201)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2    333333334444667777765544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=90.90  E-value=43  Score=40.19  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=13.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982          303 IEAAGALIDKLITENIELVEKVNDLS  328 (473)
Q Consensus       303 l~~~~~~~~~l~~Ey~~L~~k~neL~  328 (473)
                      .+++..+-.+|..+-+.-+.++++|.
T Consensus      1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445444444455555555

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.88  E-value=3.5  Score=38.34  Aligned_cols=7  Identities=0%  Similarity=0.145  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 011982          262 NLLQENR  268 (473)
Q Consensus       262 ~LwrEe~  268 (473)
                      ..|+.+.
T Consensus       159 k~w~kRK  165 (169)
T PF07106_consen  159 KEWKKRK  165 (169)
T ss_pred             HHHHHHH
Confidence            3444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.86  E-value=18  Score=40.23  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHH
Q 011982          197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV  244 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~  244 (473)
                      +......+..+...++.|+.++..|+.++..++.++..++.++..+..
T Consensus       417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444443

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=90.85  E-value=0.48  Score=48.75  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          146 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK  225 (473)
Q Consensus       146 qke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI  225 (473)
                      ..+..+.++|..|+..+..+..-.+.+..++.              .+...|..+...+..+..++..+...|..++..|
T Consensus        28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iS--------------dLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl   93 (326)
T PF04582_consen   28 GDLSPIRERLSALESSVASLSDSVSSLSSTIS--------------DLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL   93 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555443322222              2233333333333344444444444444444444


Q ss_pred             HHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          226 DSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  287 (473)
Q Consensus       226 ~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~  287 (473)
                      ..+...+.++...+...+..+..|+..+..+.-..-+|......+.-.+..|+..+..+|.-
T Consensus        94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~  155 (326)
T PF04582_consen   94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG  155 (326)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence            44444444444444444444444444444444444444444444444444444444444433

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=90.67  E-value=18  Score=35.52  Aligned_cols=19  Identities=5%  Similarity=0.078  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011982           89 EETVKHLRNERESHIQKEA  107 (473)
Q Consensus        89 ~~ei~qlE~E~~~l~q~~a  107 (473)
                      ...+.++-.+++.+.+.+.
T Consensus        44 ~~~i~~aP~~~~~l~~~l~   62 (240)
T PF12795_consen   44 QKQIDQAPKEIRELQKELE   62 (240)
T ss_pred             HHHHHHhHHHHHHHHHHHH
Confidence            3333333333333333333

>PLN03188 kinesin-12 family protein; Provisional

Probab=90.66  E-value=47  Score=40.24  Aligned_cols=37  Identities=16%  Similarity=0.120  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCcc
Q 011982          313 LITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTS  354 (473)
Q Consensus       313 l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~  354 (473)
                      +.+|+..+-+.++-|.     +....-+..+.....++.|++
T Consensus      1223 ~eqe~~~~~k~~~klk-----rkh~~e~~t~~q~~aes~l~~ 1259 (1320)
T PLN03188       1223 AEQEAAEAYKQIDKLK-----RKHENEISTLNQLVAESRLPK 1259 (1320)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccCCh
Confidence            4455555555555554     233345556666555666633

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=90.58  E-value=8.8  Score=40.36  Aligned_cols=52  Identities=13%  Similarity=0.139  Sum_probs=20.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982          182 EKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES  233 (473)
Q Consensus       182 ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~  233 (473)
                      -|+..|+.+. .+-.+....+..+...+.........+..+..+++.+..+++
T Consensus       259 sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe  311 (359)
T PF10498_consen  259 SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE  311 (359)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4444555543 333333333333333333333333333333333333333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=90.56  E-value=7.6  Score=32.94  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          210 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  281 (473)
Q Consensus       210 ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL  281 (473)
                      ++..++.....+...+.....++..+++.+..+..+++....++-.++-.++.+..|...|+..+..-..-+
T Consensus         4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i   75 (96)
T PF08647_consen    4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELI   75 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence            344444444444444444444444555555555555555555555555555555555555554444433333

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.48  E-value=4.8  Score=32.30  Aligned_cols=65  Identities=25%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          220 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD  284 (473)
Q Consensus       220 ~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~a  284 (473)
                      .|+..|...-+.|.-+.-++..+.+..+.|......++..|..|.++...|......-+..+..+
T Consensus         8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074           8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444455555555556666666666666677777777777766666555555443

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=90.23  E-value=29  Score=37.09  Aligned_cols=93  Identities=15%  Similarity=0.068  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 011982          157 QLRNQNDLHIQREGGLEMNIANLQ-SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS  235 (473)
Q Consensus       157 eLe~ei~~L~~kl~~le~rl~~LK-~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~  235 (473)
                      .|-..+..|..+...+++.+.+.+ --+..+.++.-+++++--.....+..|.-+..+|+..+++-+   +.|   .+.+
T Consensus       133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEq---Eal---vN~L  206 (552)
T KOG2129|consen  133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQ---EAL---VNSL  206 (552)
T ss_pred             chhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHH---HHH---HHHH
Confidence            455666666666665555554443 233444444446666555555556666666666655444333   222   2368


Q ss_pred             HHHHhchHHHHHHHHHHHHH
Q 011982          236 KETIAGLSVDITQLRMQVVE  255 (473)
Q Consensus       236 ~e~L~~l~~e~~~Lk~q~~e  255 (473)
                      +.+|..|+.+..-|+.++++
T Consensus       207 wKrmdkLe~ekr~Lq~KlDq  226 (552)
T KOG2129|consen  207 WKRMDKLEQEKRYLQKKLDQ  226 (552)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            88999999888888888754

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=90.12  E-value=6.2  Score=31.91  Aligned_cols=14  Identities=50%  Similarity=0.648  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHH
Q 011982          258 ESRNNLLQENRQLK  271 (473)
Q Consensus       258 deRK~LwrEe~kL~  271 (473)
                      +++..|..+..+|.
T Consensus        39 ~e~~~L~~en~~L~   52 (72)
T PF06005_consen   39 EENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=90.01  E-value=41  Score=38.58  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEE  132 (473)
Q Consensus        89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~  132 (473)
                      +..+..+...+..+...+...+..-.++.-+++..++.+..+..
T Consensus       835 E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~Lnk  878 (1480)
T COG3096         835 EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNR  878 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence            56677788888888888888888888888888888887766654

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.00  E-value=30  Score=37.00  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT  229 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~  229 (473)
                      +|..-+..++..+...+.....+.....-|...+..+.
T Consensus       245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~q  282 (446)
T KOG4438|consen  245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQ  282 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence            34444444444444555555555555555554444443

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=89.96  E-value=5.8  Score=33.66  Aligned_cols=88  Identities=19%  Similarity=0.230  Sum_probs=49.9

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          188 QKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE  266 (473)
Q Consensus       188 qkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrE  266 (473)
                      +.|+ .++.....+.........++..++..+..+..++..-..+.-.....+..+..++..|..++..-.+-...|..-
T Consensus         2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~   81 (96)
T PF08647_consen    2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET   81 (96)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3455 666666666666666666666667777776666666666554454555555555555555555444444444443


Q ss_pred             HHHHHHHHH
Q 011982          267 NRQLKENVS  275 (473)
Q Consensus       267 e~kL~~~i~  275 (473)
                      +..+.+.+.
T Consensus        82 E~~~~~~l~   90 (96)
T PF08647_consen   82 EKEFVRKLK   90 (96)
T ss_pred             HHHHHHHHH
Confidence            443333333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=89.87  E-value=32  Score=37.18  Aligned_cols=176  Identities=16%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 011982          102 HIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS  181 (473)
Q Consensus       102 l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~  181 (473)
                      |...+..|..+-+.-+.+|..+.-.-.-|+..+++|+..+...+    -+-.-|..|+..+++|...--    ++---|.
T Consensus       315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq----vfvDiinkLk~niEeLIedKY----~viLEKn  386 (527)
T PF15066_consen  315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ----VFVDIINKLKENIEELIEDKY----RVILEKN  386 (527)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHhHh----Hhhhhhh
Confidence            33444444444444455555555555555555555554433222    222233333333333333222    1110133


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------hHHHHHhchHHHHHHHH
Q 011982          182 EKEFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-------VSKETIAGLSVDITQLR  250 (473)
Q Consensus       182 ERD~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~-------~~~e~L~~l~~e~~~Lk  250 (473)
                      +-+.-++.-.    ..++.+..-+.+...|+.++..+...+-.|++.-..--++.+       .....|+.-++++..|+
T Consensus       387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ  466 (527)
T PF15066_consen  387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ  466 (527)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3333332221    444555556666666666666666666666654433222221       23344444444444444


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          251 MQVVELE----ESRNNLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       251 ~q~~eL~----deRK~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      .-.-+|.    -...-|.||.......+-+|+.++++-+
T Consensus       467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e  505 (527)
T PF15066_consen  467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE  505 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333    2223455555555555556666655543

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=89.75  E-value=20  Score=34.57  Aligned_cols=41  Identities=12%  Similarity=0.295  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          124 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  164 (473)
Q Consensus       124 ~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~  164 (473)
                      .+.+..++..+..++..+.........++.++..+...+..
T Consensus        29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~   69 (221)
T PF04012_consen   29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK   69 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444333333333344444444333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=89.56  E-value=54  Score=39.33  Aligned_cols=9  Identities=11%  Similarity=0.302  Sum_probs=4.2

Q ss_pred             ceecCCCCC
Q 011982           26 VAVGADPNH   34 (473)
Q Consensus        26 ~~~~~~~~~   34 (473)
                      ..|-|.+.|
T Consensus       506 CPVCGS~~H  514 (1047)
T PRK10246        506 CPLCGSTSH  514 (1047)
T ss_pred             cCCCCcccC
Confidence            344444444

>PF13166 AAA_13: AAA domain

Probab=89.50  E-value=42  Score=37.98  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=16.6

Q ss_pred             ccccccccCCccccccccccccccccc--cCCcceee--cC
Q 011982          357 EPMSESSDNMSSLNNRLETQGVVAVKE--DRNGINGV--HA  393 (473)
Q Consensus       357 g~l~el~~~~~v~~~~~~t~~e~~~~~--agns~vvv--~d  393 (473)
                      .||.-|-.     +.+|.++--+-...  +....|.|  |+
T Consensus       535 DPISSLD~-----~~~~~v~~~l~~~~~~~~~~QviIlTHn  570 (712)
T PF13166_consen  535 DPISSLDH-----NRRFGVASRLKEEIKNSKFRQVIILTHN  570 (712)
T ss_pred             CCCCCCCH-----HHHHHHHHHHHHHhhcCCcceEEEEeCc
Confidence            35544444     46666665543344  33336666  55

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=89.49  E-value=41  Score=37.78  Aligned_cols=54  Identities=20%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011982          124 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA  177 (473)
Q Consensus       124 ~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~  177 (473)
                      .++++.|+..-..|.-+......+.+...++|..|+--+..+..++...++.+.
T Consensus       110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ  163 (861)
T KOG1899|consen  110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ  163 (861)
T ss_pred             HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH
Confidence            344444444444444444444444555556666777777777777776555544

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=89.43  E-value=37  Score=37.28  Aligned_cols=56  Identities=13%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 011982          206 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL  264 (473)
Q Consensus       206 ~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lw  264 (473)
                      .+..++..+...+..|++++..-+.   +++++|+.|.+.+..|..++....|+-..|.
T Consensus       459 ~l~eeL~~a~~~i~~LqDEL~TTr~---NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  459 SLEEELKEANQNISRLQDELETTRR---NYEEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444433333   6666666666666666666666655554443

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=89.37  E-value=15  Score=37.50  Aligned_cols=98  Identities=10%  Similarity=0.051  Sum_probs=51.4

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           68 AESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK  147 (473)
Q Consensus        68 ~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk  147 (473)
                      ++|-+-.+-=+.++.-+|..+......|..=.+.....+..+...-+.|++++..+.++-..+..++.+++........-
T Consensus       223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g  302 (384)
T KOG0972|consen  223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG  302 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34444444444444445555555555555555555555666666666666666666666666666666665554444333


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011982          148 EATLEETIKQLRNQNDLH  165 (473)
Q Consensus       148 e~~le~eLeeLe~ei~~L  165 (473)
                      ...-...|.++-.+++.+
T Consensus       303 v~~rT~~L~eVm~e~E~~  320 (384)
T KOG0972|consen  303 VSSRTETLDEVMDEIEQL  320 (384)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333344433333333

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=89.37  E-value=24  Score=35.01  Aligned_cols=170  Identities=11%  Similarity=0.097  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           73 LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE  152 (473)
Q Consensus        73 ~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le  152 (473)
                      +.|--+.|+.+.+.+-+-=. +.-..+..|-+-+-....+|..|..+......--..+..++.-+-....+.+.-+..++
T Consensus        76 LeeliNkWs~el~~Qe~vF~-~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE  154 (254)
T KOG2196|consen   76 LEELINKWSLELEEQERVFL-QQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLE  154 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666665522211 11223444555555555555555555555444444444444444333332222222222


Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          153 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       153 ~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      ..+.....-   .+         +.+.-.||..--.--..+...+.++...+..+-..+.....-...-. .|..+.+-+
T Consensus       155 ~k~~~~~g~---~~---------~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~-~~~qi~Kil  221 (254)
T KOG2196|consen  155 TKLELQSGH---TY---------LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTD-PIIQIEKIL  221 (254)
T ss_pred             HHHhccccc---hh---------hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCC-chHHHHHHH
Confidence            222211100   00         11113333333332224444455444444444444433322222111 234445555


Q ss_pred             HhHHHHHhchHHHHHHHHHHHHHH
Q 011982          233 SVSKETIAGLSVDITQLRMQVVEL  256 (473)
Q Consensus       233 ~~~~e~L~~l~~e~~~Lk~q~~eL  256 (473)
                      +.+.+.|.-+......+..+++.+
T Consensus       222 nah~~sLqwl~d~st~~e~k~d~i  245 (254)
T KOG2196|consen  222 NAHMDSLQWLDDNSTQLEKKLDKI  245 (254)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHH
Confidence            556666666665555555555444

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.23  E-value=6.9  Score=32.16  Aligned_cols=68  Identities=16%  Similarity=0.131  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI  155 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL  155 (473)
                      |+.+|.++=+.+..+.-.+..++.+-..|..+..........+..++..|+.+...|+.++..+-.++
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm   76 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334444444444444444444444444444444444455566677777666666666655544433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.00  E-value=7.6  Score=37.67  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 011982          262 NLLQENRQLKENVSSLRSQLSSD  284 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~~eL~~a  284 (473)
                      .|..+..+|...+..++.+++.+
T Consensus       136 ~L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884        136 GLKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.96  E-value=5.8  Score=31.81  Aligned_cols=59  Identities=22%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          152 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK  210 (473)
Q Consensus       152 e~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~e  210 (473)
                      +..+..|+..++.+..+.+..+.....+..|||..+.+--.+-..+..++.++..+..+
T Consensus         4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555666667777777766644444444444444444433

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.89  E-value=47  Score=37.68  Aligned_cols=19  Identities=26%  Similarity=0.184  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 011982          273 NVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       273 ~i~~L~~eL~~ae~~l~~a  291 (473)
                      .+.-|+.++..+++.+.+.
T Consensus       276 tv~~LqeE~e~Lqskl~~~  294 (716)
T KOG4593|consen  276 TVGLLQEELEGLQSKLGRL  294 (716)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            3445566666666666555

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.80  E-value=7.8  Score=31.41  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          102 HIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG  170 (473)
Q Consensus       102 l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~  170 (473)
                      +.+.++.-...|.+|..+...+..+...+...|+.|+..+...+.....+..++..+...+..+...+.
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445566666777777777777777777777777777777777777766666666666666666655443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=88.68  E-value=29  Score=39.79  Aligned_cols=34  Identities=9%  Similarity=0.134  Sum_probs=22.1

Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011982          299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD  332 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~  332 (473)
                      .+.++..+.-..+....=|..|++|..|+.+...
T Consensus       368 ~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a  401 (726)
T PRK09841        368 TQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS  401 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344445555666667778888888888776543

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=88.57  E-value=27  Score=34.50  Aligned_cols=142  Identities=17%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 011982          150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLK-LLEADKDS  227 (473)
Q Consensus       150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie-~Le~EI~~  227 (473)
                      .+......+...++.|..++..++..+...+.+|..-+.... .+...+..+...+..-......-+..|- .+......
T Consensus        82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~  161 (247)
T PF06705_consen   82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENR  161 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566666666666666666666666666666554444 6666666666555554444433333222 12222222


Q ss_pred             HHH----HhHhHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          228 WTQ----MESVSKETIAGLSVDITQLRMQVVELEESR-NNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       228 L~~----ei~~~~e~L~~l~~e~~~Lk~q~~eL~deR-K~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      +..    +.......++.+...+..+......-.+.- ..+..|...|...+.....+-..+...+-+|
T Consensus       162 l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~a  230 (247)
T PF06705_consen  162 LQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQA  230 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            222    112233444444444444433332222222 2244555555555555444444444444444

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=88.55  E-value=34  Score=35.71  Aligned_cols=66  Identities=26%  Similarity=0.303  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           84 REAILEETVKHLRNERESHIQKE-------ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA  149 (473)
Q Consensus        84 ~e~~~~~ei~qlE~E~~~l~q~~-------a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~  149 (473)
                      .|.....-|..|+.++..+.+--       +-||....+|+.+++-....+...+..-+.|...+.....+..
T Consensus       112 aE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe  184 (561)
T KOG1103|consen  112 AEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE  184 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666543       3455666666666666666666666666666555555544433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.51  E-value=8.3  Score=30.97  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           91 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKE  148 (473)
Q Consensus        91 ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke  148 (473)
                      .+.++=+-+..+.=.+..|..+-..|..+.......+..++.+...|+.+...|+..+
T Consensus        12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl   69 (79)
T COG3074          12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL   69 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444444555555544444444443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.50  E-value=7.6  Score=31.13  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          109 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG  170 (473)
Q Consensus       109 LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~  170 (473)
                      |+-.+..|.+.+++..++....+..++.|..+-......+.....++..|+.+++.+..++.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~   64 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE   64 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555566666666666666555555555555555555555555555555443

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=88.48  E-value=24  Score=35.78  Aligned_cols=16  Identities=25%  Similarity=0.746  Sum_probs=12.2

Q ss_pred             HHHHHHHHH-HHHHHHH
Q 011982          183 KEFWLQKEA-ALEQKIS  198 (473)
Q Consensus       183 RD~wLqkEi-~Le~~I~  198 (473)
                      |+.|+..|= .+++++.
T Consensus       102 rEDWIEEECHRVEAQLA  118 (305)
T PF15290_consen  102 REDWIEEECHRVEAQLA  118 (305)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            678999886 6666665

>PLN03188 kinesin-12 family protein; Provisional

Probab=88.47  E-value=67  Score=38.98  Aligned_cols=84  Identities=12%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhh
Q 011982          262 NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLS  341 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~  341 (473)
                      .||-|...-++...+|+.+|..-+.-.        ++|+..++-+=.=-..-++-|++|.+|+|.|..  +++...-|+.
T Consensus      1069 elr~eles~r~l~Ekl~~EL~~eK~c~--------eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~--~hr~i~egi~ 1138 (1320)
T PLN03188       1069 ELRTELDASRALAEKQKHELDTEKRCA--------EELKEAMQMAMEGHARMLEQYADLEEKHIQLLA--RHRRIQEGID 1138 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            466666664444566666665433211        223444444444456678899999999999998  6788899999


Q ss_pred             hhhhhhcccCCccc
Q 011982          342 SAIGSDAVTALTSD  355 (473)
Q Consensus       342 s~~~~~~~~~l~~v  355 (473)
                      =|...+.+-|+.|.
T Consensus      1139 dvkkaaakag~kg~ 1152 (1320)
T PLN03188       1139 DVKKAAARAGVRGA 1152 (1320)
T ss_pred             HHHHHHHHhccccc
Confidence            99998888888774

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=88.20  E-value=0.82  Score=47.10  Aligned_cols=121  Identities=19%  Similarity=0.210  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHH
Q 011982          173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ  252 (473)
Q Consensus       173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q  252 (473)
                      .+|+..+..-...+-..--.+...|..+...++.+...+.++..++..+...|..+...+.++...+.++...+......
T Consensus        34 ~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ss  113 (326)
T PF04582_consen   34 RERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSS  113 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhh
Confidence            33444444333343334448999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011982          253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT  293 (473)
Q Consensus       253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~  293 (473)
                      +..|+-....+--+..-|++.+......|..+++.|...|.
T Consensus       114 IS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs  154 (326)
T PF04582_consen  114 ISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES  154 (326)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999988764

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=88.15  E-value=54  Score=37.47  Aligned_cols=7  Identities=0%  Similarity=-0.225  Sum_probs=2.9

Q ss_pred             ccccccc
Q 011982          371 NRLETQG  377 (473)
Q Consensus       371 ~~~~t~~  377 (473)
                      |.|..|+
T Consensus       390 DGYnVCI  396 (670)
T KOG0239|consen  390 DGYNVCI  396 (670)
T ss_pred             cCcceeE
Confidence            4444443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=88.14  E-value=30  Score=34.60  Aligned_cols=95  Identities=16%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 011982           87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK----EATLEETIKQLRNQN  162 (473)
Q Consensus        87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk----e~~le~eLeeLe~ei  162 (473)
                      .....-.+..++.......-+.+|-   .|..++..++.+...++.....|..+......+    .......+..|+..+
T Consensus        24 ~ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl  100 (333)
T KOG1853|consen   24 EYKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL  100 (333)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444454444433333322   223333333333444444444444443333222    222333334444444


Q ss_pred             HHHHHHhhchHHHHHHHHHHHH
Q 011982          163 DLHIQREGGLEMNIANLQSEKE  184 (473)
Q Consensus       163 ~~L~~kl~~le~rl~~LK~ERD  184 (473)
                      ....+....++..+..|....|
T Consensus       101 sqt~aikeql~kyiReLEQaND  122 (333)
T KOG1853|consen  101 SQTHAIKEQLRKYIRELEQAND  122 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Confidence            4444444434444444433333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=87.76  E-value=31  Score=36.81  Aligned_cols=18  Identities=17%  Similarity=0.325  Sum_probs=10.2

Q ss_pred             cCCceeeecCCCCCcchh
Q 011982          407 YSGEIVQIPLDDKEVQDL  424 (473)
Q Consensus       407 ~~gritf~PLn~~~~~~~  424 (473)
                      -+|+||-+.|..-.-+-.
T Consensus       340 ~gg~vtSl~ls~~g~~lL  357 (459)
T KOG0288|consen  340 LGGRVTSLDLSMDGLELL  357 (459)
T ss_pred             cCcceeeEeeccCCeEEe
Confidence            466777666655544433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.75  E-value=5.2  Score=39.14  Aligned_cols=15  Identities=33%  Similarity=0.607  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 011982          214 LEERLKLLEADKDSW  228 (473)
Q Consensus       214 Leeeie~Le~EI~~L  228 (473)
                      +...+.++..+-..|
T Consensus       140 ~kekl~E~~~EkeeL  154 (290)
T COG4026         140 LKEKLEELQKEKEEL  154 (290)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=87.75  E-value=18  Score=36.50  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  274 (473)
Q Consensus       208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i  274 (473)
                      ..++......+.....+++.+..++...+..++++...+.+.+..+..|+.++-.+......+++.+
T Consensus       192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV  258 (269)
T PF05278_consen  192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV  258 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444444444444444444443333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=87.68  E-value=24  Score=32.95  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  230 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~  230 (473)
                      |......+..+..++..+..+...+...+..+..
T Consensus       100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~  133 (177)
T PF13870_consen  100 LKDREEELAKLREELYRVKKERDKLRKQNKKLRQ  133 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444433

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.59  E-value=38  Score=35.17  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 011982           77 ERQHLLQREAILEETVKHLRNE   98 (473)
Q Consensus        77 ~~~~~~q~e~~~~~ei~qlE~E   98 (473)
                      ||+...--...++..|+.+-+.
T Consensus        62 e~qlk~aa~~llq~kirk~~e~   83 (401)
T PF06785_consen   62 EKQLKTAAGQLLQTKIRKITEK   83 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4444333333444444444333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=87.51  E-value=25  Score=32.85  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  221 (473)
Q Consensus       172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L  221 (473)
                      ++.+-.+|+..||.+-+....+...|.....-...+..-+.=|..++..+
T Consensus        96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v  145 (159)
T PF05384_consen   96 LREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV  145 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            33344444555554444444444444444443333333333333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.26  E-value=8.5  Score=35.75  Aligned_cols=61  Identities=26%  Similarity=0.340  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hHHHHHhchHHHHHHHHHHHHHHH
Q 011982          197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES--VSKETIAGLSVDITQLRMQVVELE  257 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~--~~~e~L~~l~~e~~~Lk~q~~eL~  257 (473)
                      +..+..++..|..++..+..++..++.++..|.....  .+...+..+..++..+...+..|.
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444443332  233444444444444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK11519 tyrosine kinase; Provisional

Probab=87.17  E-value=28  Score=39.88  Aligned_cols=33  Identities=12%  Similarity=0.114  Sum_probs=23.7

Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982          299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKL  331 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~  331 (473)
                      .+.++..+.-..+....=|..|++|+.++.+..
T Consensus       368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~  400 (719)
T PRK11519        368 TQQEIVRLTRDVESGQQVYMQLLNKQQELKITE  400 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            444555666677777788888888888887643

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=87.15  E-value=34  Score=34.05  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          257 EESRNNLLQENRQLKENVSSLRSQLSSDES  286 (473)
Q Consensus       257 ~deRK~LwrEe~kL~~~i~~L~~eL~~ae~  286 (473)
                      ..+|-..|.....|...+..|..+|..+..
T Consensus       174 EeeR~t~~EKnk~lq~QL~~L~~EL~~~kd  203 (246)
T PF00769_consen  174 EEERVTYAEKNKRLQEQLKELKSELEQLKD  203 (246)
T ss_dssp             GGC---HHHH-HHHHHHHHHHHHHHHTTB-
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            456666666666666666666666655543

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.13  E-value=9.6  Score=37.35  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982          197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  259 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de  259 (473)
                      +..+..+...|..++..++.++.+.+..|..|+.+...+.+.+..+-.++.+|+..+.+|.+.
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            333444444555556666666666666666666665555666666666666666666666544

>TIGR00634 recN DNA repair protein RecN

Probab=87.03  E-value=55  Score=36.36  Aligned_cols=38  Identities=8%  Similarity=0.025  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           98 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ  135 (473)
Q Consensus        98 E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLk  135 (473)
                      +++.+......+...+.++..+.....+++..+..++.
T Consensus       162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~  199 (563)
T TIGR00634       162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE  199 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=86.90  E-value=29  Score=32.99  Aligned_cols=76  Identities=16%  Similarity=0.118  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          153 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  228 (473)
Q Consensus       153 ~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L  228 (473)
                      .+|...+..-.-|..++.-++..+..-..+|+..+...+.++..-..-...+..-...++.|+.++..|...-..-
T Consensus        64 ~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~a  139 (178)
T PF14073_consen   64 SQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLA  139 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444446677777777765555533223333333344455555555554443333

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=86.29  E-value=52  Score=35.40  Aligned_cols=29  Identities=14%  Similarity=0.188  Sum_probs=17.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982          302 QIEAAGALIDKLITENIELVEKVNDLSVK  330 (473)
Q Consensus       302 ql~~~~~~~~~l~~Ey~~L~~k~neL~~~  330 (473)
                      ++..+-...+...+=|..++.|+-++.++
T Consensus       374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~~~  402 (458)
T COG3206         374 QLRELEREAEAARSLYETLLQRYQELSIQ  402 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444455555566677777777777763

>PRK10698 phage shock protein PspA; Provisional

Probab=86.27  E-value=35  Score=33.38  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHH
Q 011982          214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL  256 (473)
Q Consensus       214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL  256 (473)
                      ....+..|+.++......+..+...+..|+..+.+++.+...|
T Consensus        97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L  139 (222)
T PRK10698         97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL  139 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=85.98  E-value=42  Score=33.96  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          193 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE  272 (473)
Q Consensus       193 Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~  272 (473)
                      +..-|.....++..++..+..+..+-..|+..|+..+.+++-...++..|+.-.=.-..+++.|+.+.+.|+..=-.=-+
T Consensus       167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR  246 (267)
T PF10234_consen  167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR  246 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555555555555544444444555555555555444444444


Q ss_pred             HHHHHHHHHHH
Q 011982          273 NVSSLRSQLSS  283 (473)
Q Consensus       273 ~i~~L~~eL~~  283 (473)
                      .++=|+.++..
T Consensus       247 Nl~yLe~qle~  257 (267)
T PF10234_consen  247 NLDYLEHQLEE  257 (267)
T ss_pred             hHHHHHHHHHH
Confidence            44444444443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.73  E-value=21  Score=36.67  Aligned_cols=83  Identities=23%  Similarity=0.334  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  167 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~  167 (473)
                      +...+..+++..+...=.-|+|...-..|.=+++.++.++..+++.+..++.++.......+.+...+..++.++..+..
T Consensus        82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre  161 (302)
T PF09738_consen   82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE  161 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47777778888888888888888888888888888888888888888888888776666666666666666666666555


Q ss_pred             Hhh
Q 011982          168 REG  170 (473)
Q Consensus       168 kl~  170 (473)
                      .+.
T Consensus       162 ~L~  164 (302)
T PF09738_consen  162 QLK  164 (302)
T ss_pred             HHH
Confidence            554

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=85.64  E-value=36  Score=39.07  Aligned_cols=12  Identities=17%  Similarity=0.111  Sum_probs=6.4

Q ss_pred             cCCceeeecCCC
Q 011982          407 YSGEIVQIPLDD  418 (473)
Q Consensus       407 ~~gritf~PLn~  418 (473)
                      .+-||.+|=+|-
T Consensus       559 ~G~rVLlID~D~  570 (726)
T PRK09841        559 SDQKVLFIDADL  570 (726)
T ss_pred             CCCeEEEEeCCC
Confidence            344666665543

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.09  E-value=23  Score=33.95  Aligned_cols=54  Identities=22%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      +..|..++..+..++.+...+.......+.+..+|......+..++.+++....
T Consensus       130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444455555666666666666666666555443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=84.95  E-value=66  Score=35.38  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      +.+|..++..+..+...|...+..+..+++.++..+
T Consensus       276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~  311 (511)
T PF09787_consen  276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL  311 (511)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666666666666666666665555554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=84.84  E-value=53  Score=34.18  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      .++.-+..++.+...++.+++.+..++.+.+++-.+|..++.+.-.-...|.++...--.+-..+-+.|.   --+.+|.
T Consensus       131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ---~yI~~LE  207 (401)
T PF06785_consen  131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ---AYIGKLE  207 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH---HHHHHHH
Confidence            4555566666666666666666666666666666666655544444444444443222111112222222   2234455


Q ss_pred             HHHHHHHHHHHHH
Q 011982          272 ENVSSLRSQLSSD  284 (473)
Q Consensus       272 ~~i~~L~~eL~~a  284 (473)
                      +.++.|--|+.++
T Consensus       208 sKVqDLm~EirnL  220 (401)
T PF06785_consen  208 SKVQDLMYEIRNL  220 (401)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555554444443

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=84.78  E-value=47  Score=33.57  Aligned_cols=111  Identities=15%  Similarity=0.139  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982          178 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE  257 (473)
Q Consensus       178 ~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~  257 (473)
                      .++..|..-+....++..--..++..+..+..++..++..+..+..+-..|...|+....++...+..+..|+.-+=.-+
T Consensus       145 ~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfm  224 (267)
T PF10234_consen  145 ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFM  224 (267)
T ss_pred             hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            34777777777766666666777777777777777777777777777777777777766777666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          258 ESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      |+...|-.|-++|....-.-=-.+.-++..+
T Consensus       225 dEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql  255 (267)
T PF10234_consen  225 DEYEKLEEELQKLYEIYVEKFRNLDYLEHQL  255 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            7777776666666655443333344444444

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=84.76  E-value=67  Score=35.31  Aligned_cols=26  Identities=15%  Similarity=0.141  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982          154 TIKQLRNQNDLHIQREGGLEMNIANL  179 (473)
Q Consensus       154 eLeeLe~ei~~L~~kl~~le~rl~~L  179 (473)
                      +..++...++-+.......+..+.+|
T Consensus       215 ~~~e~~~~l~l~~~~~~~~~~el~~Y  240 (511)
T PF09787_consen  215 ESGELQEQLELLKAEGESEEAELQQY  240 (511)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33444444444444444444444444

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=84.73  E-value=12  Score=32.43  Aligned_cols=54  Identities=17%  Similarity=0.222  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhHHHHHhchHHHHHH
Q 011982          195 QKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMESVSKETIAGLSVDITQ  248 (473)
Q Consensus       195 ~~I~~l~~el~~L~~ei~~Leeeie~L--e~EI~~L~~ei~~~~e~L~~l~~e~~~  248 (473)
                      ..+..+...+.....++..++.++..+  ..++..|.-.+.+....++.+.+++..
T Consensus        35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~   90 (106)
T PF10805_consen   35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG   90 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            334433333333344444444444444  333333333333333333333333333

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=84.58  E-value=49  Score=33.58  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=13.5

Q ss_pred             ccccccccCCccccccccccccccccccC
Q 011982          357 EPMSESSDNMSSLNNRLETQGVVAVKEDR  385 (473)
Q Consensus       357 g~l~el~~~~~v~~~~~~t~~e~~~~~ag  385 (473)
                      +||..+.+     .+.+..-+.||+...+
T Consensus       229 ~~l~~i~~-----~~~~~v~~~v~e~~~~  252 (327)
T TIGR02971       229 EGILEMGD-----TSQMYAVAEVYETDIN  252 (327)
T ss_pred             CccEEEec-----CCcEEEEEEEcHHHHh
Confidence            56665555     3455666666665444

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins

Probab=84.34  E-value=1.1  Score=50.24  Aligned_cols=138  Identities=14%  Similarity=0.062  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH---------------HHHHHHHHHHHHHHH----
Q 011982          201 RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI---------------TQLRMQVVELEESRN----  261 (473)
Q Consensus       201 ~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~---------------~~Lk~q~~eL~deRK----  261 (473)
                      ...+..|..-+..|+.........+..+...+..++..|.-..++.               ..++.++.-|...++    
T Consensus       206 ~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk  285 (619)
T PF03999_consen  206 DENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLK  285 (619)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4455555555566666666666666666666666665554443332               333444444443332    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982          262 ----NLLQENRQLKENVSSLRSQLSSDESKKLQHAT--------SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  329 (473)
Q Consensus       262 ----~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~--------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~  329 (473)
                          .+|.|..+||....--..+............+        .++..|. +.-..+..|..+++++..|.++..+|..
T Consensus       286 ~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk-~~~~~~k~Il~~v~k~~~l~~~~~~Le~  364 (619)
T PF03999_consen  286 EFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK-EEYESRKPILELVEKWESLWEEMEELEE  364 (619)
T ss_dssp             -------------------------------------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                34555555555543322222211111111100        0444444 3334456778889999999999999987


Q ss_pred             hhhh--hhHHhh
Q 011982          330 KLDR--QSVAAG  339 (473)
Q Consensus       330 ~~~~--~~~~~G  339 (473)
                      .-+|  |-..||
T Consensus       365 ~~~D~~Rl~~RG  376 (619)
T PF03999_consen  365 SSKDPSRLNNRG  376 (619)
T ss_dssp             HHH-CCGG----
T ss_pred             HhcChhhhcccc
Confidence            7665  445666

One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.24  E-value=16  Score=35.68  Aligned_cols=61  Identities=23%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  274 (473)
Q Consensus       214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i  274 (473)
                      ++++......++..+++++......+...+.....++.|.+.+.++...|-.+.++|+..+
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            3444444444455555554445555555555555555566665555555555555555444

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=84.15  E-value=87  Score=36.10  Aligned_cols=29  Identities=14%  Similarity=0.327  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          108 TLEGTVQQLQNECDLYKEKVATLEETIQQ  136 (473)
Q Consensus       108 ~LE~kikeL~eei~~~~qk~~~LE~eLke  136 (473)
                      .+-+-+.-|..+.+.+.+++..+..++.+
T Consensus       384 EIALA~QplrsENaqLrRrLrilnqqlre  412 (861)
T PF15254_consen  384 EIALAMQPLRSENAQLRRRLRILNQQLRE  412 (861)
T ss_pred             hhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            33455666666666666666666665555

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=83.69  E-value=42  Score=32.14  Aligned_cols=64  Identities=16%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             HHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          228 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       228 L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      +..++.........++..+.++...+.+|+++...+..+....+..+.+++.....+...+..+
T Consensus       115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~  178 (190)
T PF05266_consen  115 LEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA  178 (190)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444445555555555555555555555444444555555555555544444443

>PRK11519 tyrosine kinase; Provisional

Probab=83.67  E-value=60  Score=37.22  Aligned_cols=11  Identities=18%  Similarity=0.247  Sum_probs=5.2

Q ss_pred             cCCceeeecCC
Q 011982          407 YSGEIVQIPLD  417 (473)
Q Consensus       407 ~~gritf~PLn  417 (473)
                      .+-||..|=+|
T Consensus       554 ~g~rvLlID~D  564 (719)
T PRK11519        554 TNKRVLLIDCD  564 (719)
T ss_pred             CCCcEEEEeCC
Confidence            34445555443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=83.65  E-value=1.1e+02  Score=36.67  Aligned_cols=56  Identities=14%  Similarity=0.140  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh----h---hchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          267 NRQLKENVSSLRSQLSSDESKKLQHA----T---SEQKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       267 e~kL~~~i~~L~~eL~~ae~~l~~ae----~---~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                      +.-+...++.++.....+...+..+-    +   +-+..++..++-+.-....+.+.++.-..
T Consensus       627 r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~  689 (1041)
T KOG0243|consen  627 RDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS  689 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444555544444444443331    1   14556666777777777777777777666

>COG5283 Phage-related tail protein [Function unknown]

Probab=83.22  E-value=1.2e+02  Score=36.80  Aligned_cols=115  Identities=10%  Similarity=0.036  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          116 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ  195 (473)
Q Consensus       116 L~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~  195 (473)
                      |.+.+....+-...+|.+.+.-.........+.+.+.+.++....-+.++.++..+.-......+..++++-.....++.
T Consensus        27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~  106 (1213)
T COG5283          27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN  106 (1213)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666677777777777667777777777777888888888888888888776666666667777766666556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          196 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  230 (473)
Q Consensus       196 ~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~  230 (473)
                      .+..+..+......++.--+.++..+..+|..+..
T Consensus       107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k  141 (1213)
T COG5283         107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNK  141 (1213)
T ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            66666666666655555555555666655555555

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.00  E-value=91  Score=35.47  Aligned_cols=12  Identities=0%  Similarity=0.149  Sum_probs=6.1

Q ss_pred             cCCceeeecCCC
Q 011982          407 YSGEIVQIPLDD  418 (473)
Q Consensus       407 ~~gritf~PLn~  418 (473)
                      +.-||++|-.|.
T Consensus       538 ~~~rVl~~~~np  549 (716)
T KOG4593|consen  538 NITRVLHMSTNP  549 (716)
T ss_pred             hccceeeecCCc
Confidence            445555555443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=82.70  E-value=31  Score=32.89  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          181 SEKEFWLQKEAALEQKISQLRDESA  205 (473)
Q Consensus       181 ~ERD~wLqkEi~Le~~I~~l~~el~  205 (473)
                      .+|..++.....+...+..++.++.
T Consensus       103 ~eR~~~l~~l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen  103 EEREELLEELEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.70  E-value=49  Score=32.13  Aligned_cols=8  Identities=0%  Similarity=0.156  Sum_probs=3.0

Q ss_pred             hHHHHHHh
Q 011982          299 FSTQIEAA  306 (473)
Q Consensus       299 Me~ql~~~  306 (473)
                      ++.++..+
T Consensus       193 l~~~l~~l  200 (219)
T TIGR02977       193 LEDEFAEL  200 (219)
T ss_pred             HHHHHHHh
Confidence            33333333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK04406 hypothetical protein; Provisional

Probab=82.24  E-value=10  Score=30.92  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHH
Q 011982          214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR  250 (473)
Q Consensus       214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk  250 (473)
                      ++..|..|+..+.+....++.+.+.+...+.++..|+
T Consensus         9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~   45 (75)
T PRK04406          9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ   45 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333333333333333333

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=82.12  E-value=28  Score=30.10  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS  282 (473)
Q Consensus       247 ~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~  282 (473)
                      ..+...++.+....+.|-.....|...+..++..++
T Consensus        70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~  105 (110)
T TIGR02338        70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=82.11  E-value=1.1e+02  Score=35.80  Aligned_cols=17  Identities=29%  Similarity=0.255  Sum_probs=10.2

Q ss_pred             hHHHHHHhhhhHHHHHH
Q 011982          299 FSTQIEAAGALIDKLIT  315 (473)
Q Consensus       299 Me~ql~~~~~~~~~l~~  315 (473)
                      ...++.+++.+++.-..
T Consensus       424 ~e~k~~a~~q~iD~~e~  440 (984)
T COG4717         424 REEKIAANSQVIDKEEV  440 (984)
T ss_pred             HHHHHHhhcCCCCHHHH
Confidence            55566666666655443

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=82.04  E-value=75  Score=33.81  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------h---------c----hhchHHHHHHh
Q 011982          247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-------S---------E----QKDFSTQIEAA  306 (473)
Q Consensus       247 ~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-------~---------~----~~dMe~ql~~~  306 (473)
                      ..|-.+.+.-......-.+|.++|.+.-+.|.+.|..--..+.-.-+       +         +    +-.-+..|+|+
T Consensus       445 ahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYL  524 (593)
T KOG4807|consen  445 AHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYL  524 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHH
Confidence            33444444444444555677888877777766655543333322211       0         3    33446789999


Q ss_pred             hhhHHHHHHHHHHHHH
Q 011982          307 GALIDKLITENIELVE  322 (473)
Q Consensus       307 ~~~~~~l~~Ey~~L~~  322 (473)
                      +..|.+|-.|.+....
T Consensus       525 KqEissLkDELQtalr  540 (593)
T KOG4807|consen  525 KQEISSLKDELQTALR  540 (593)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988765

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=81.93  E-value=52  Score=34.17  Aligned_cols=21  Identities=14%  Similarity=0.271  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011982          262 NLLQENRQLKENVSSLRSQLS  282 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~~eL~  282 (473)
                      .|.++..-.......+...++
T Consensus       282 ~L~re~~~a~~~y~~~l~r~~  302 (362)
T TIGR01010       282 RLVLQNELAQQQLKAALTSLQ  302 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=81.79  E-value=48  Score=33.63  Aligned_cols=55  Identities=15%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLY  123 (473)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~  123 (473)
                      |-+|-.|..||          +++-=-.+-+..|++|...++...+++..-+..|.+|+.++...
T Consensus        47 dNHGikPP~PE----------QYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RM  101 (305)
T PF15290_consen   47 DNHGIKPPNPE----------QYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARM  101 (305)
T ss_pred             cCCCCCCCCHH----------HhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            55666666662          22212233345667777777776666666666666666665543

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.44  E-value=93  Score=34.50  Aligned_cols=139  Identities=14%  Similarity=0.191  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011982           97 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI  176 (473)
Q Consensus        97 ~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl  176 (473)
                      -+-+.-...+...+...++|.+.++.........+.++..|+....+..........+|..+.-.++....+.+.++..+
T Consensus       324 rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL  403 (654)
T KOG4809|consen  324 RDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL  403 (654)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555666666666666666666666666666666666665555555555666666666666666666555444


Q ss_pred             HHH-HHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 011982          177 ANL-QSEKEFWL----QKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS  235 (473)
Q Consensus       177 ~~L-K~ERD~wL----qkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~  235 (473)
                      .+. +.+-|...    ...| .++..++..+........+++++=.-+.+.+.+-..-...+..+
T Consensus       404 kkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiael  468 (654)
T KOG4809|consen  404 KKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAEL  468 (654)
T ss_pred             HHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhc
Confidence            443 22222222    2222 44444555555555555555544444444444444333333333

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=81.41  E-value=58  Score=32.12  Aligned_cols=103  Identities=11%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc-hHHHHHHHHHHHHH
Q 011982          178 NLQSEKEFWLQKEAALEQKISQLRDE-SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG-LSVDITQLRMQVVE  255 (473)
Q Consensus       178 ~LK~ERD~wLqkEi~Le~~I~~l~~e-l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~-l~~e~~~Lk~q~~e  255 (473)
                      .|..||..|...+..+-..+...... ...+..+...-+..+..+..++..+........+.+.. +-.+++.++..+..
T Consensus       136 ~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~  215 (247)
T PF06705_consen  136 AFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALAL  215 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34788888888777555555443322 23455566666777777777777777666666666666 44677777777777


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHH
Q 011982          256 LEESRNNLLQEN-RQLKENVSSLRSQ  280 (473)
Q Consensus       256 L~deRK~LwrEe-~kL~~~i~~L~~e  280 (473)
                      ....|..--++. .-|.+....|++-
T Consensus       216 e~~~R~~~Dd~Iv~aln~yt~~lQ~~  241 (247)
T PF06705_consen  216 ESQEREQSDDDIVQALNHYTKALQDG  241 (247)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            777777654443 2333334444333

>TIGR02231 conserved hypothetical protein

Probab=81.39  E-value=17  Score=39.82  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          196 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG---L-SVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       196 ~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~---l-~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      .+..++.++..++.++..++.++..++..+..|..--......+..   . .....++..-......++..+..+...|.
T Consensus        72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (525)
T TIGR02231        72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE  151 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666666666665432111111110   0 11234444444444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 011982          272 ENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       272 ~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ..+..++.++..++..+..+
T Consensus       152 ~~~~~~~~~l~~l~~~l~~l  171 (525)
T TIGR02231       152 RRIRELEKQLSELQNELNAL  171 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            55555555555555555443

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=81.39  E-value=95  Score=34.59  Aligned_cols=97  Identities=8%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 011982           95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM  174 (473)
Q Consensus        95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~  174 (473)
                      ++.+...+.+..+.|...+.+...++....+-...+..++..-..-+.........+...+..++...+....+..+.-.
T Consensus       412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~  491 (607)
T KOG0240|consen  412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT  491 (607)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555544444444444444444443333333333333444444455555555555555554555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          175 NIANLQSEKEFWLQKEA  191 (473)
Q Consensus       175 rl~~LK~ERD~wLqkEi  191 (473)
                      .+..+-..++.|++...
T Consensus       492 al~el~~~~~~~~~~~~  508 (607)
T KOG0240|consen  492 ALEELAVNYDQKSEEKE  508 (607)
T ss_pred             HHHHHHHhhhHHHHHHh
Confidence            56666777777777663

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=81.33  E-value=48  Score=31.10  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          193 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK-ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       193 Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~-e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      +..-+...-..+..---...+++.....+...+..++.++.... ..++.+..+...|+.+++.+.+   .|..+..+|.
T Consensus        28 l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~---~L~~ei~~l~  104 (177)
T PF07798_consen   28 LREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ---ELREEINKLR  104 (177)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH


Q ss_pred             HHHH--------HHHHHHHHHHHHHHhhhhh---chhchHHHHHHhhhhH
Q 011982          272 ENVS--------SLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALI  310 (473)
Q Consensus       272 ~~i~--------~L~~eL~~ae~~l~~ae~~---~~~dMe~ql~~~~~~~  310 (473)
                      ..+.        ..+.+....+..+..+...   ++.+|..+|+..+..+
T Consensus       105 a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~  154 (177)
T PF07798_consen  105 AEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT  154 (177)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=81.14  E-value=40  Score=30.12  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDE  285 (473)
Q Consensus       253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae  285 (473)
                      +..+....+.|......|...+..+...+....
T Consensus        96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~  128 (140)
T PRK03947         96 IEILDKRKEELEKALEKLEEALQKLASRIAQLA  128 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=81.11  E-value=19  Score=28.67  Aligned_cols=60  Identities=23%  Similarity=0.240  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 011982          113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL  172 (473)
Q Consensus       113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~l  172 (473)
                      ++.|..+++.+......+..++..|+.+...|..+-..+..+.+..+..++.+...+-.+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l   61 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            456677777777777777788888888888887777777777777777777766665543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=81.05  E-value=41  Score=30.10  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD  284 (473)
Q Consensus       246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~a  284 (473)
                      +.-+...++.+....+.+..+...+...+..+...+..+
T Consensus        96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l  134 (140)
T PRK03947         96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555443

>PF15294 Leu_zip: Leucine zipper

Probab=81.03  E-value=68  Score=32.65  Aligned_cols=147  Identities=12%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhch
Q 011982           95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKE--ATLEETIKQLRNQNDLHIQREGGL  172 (473)
Q Consensus        95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke--~~le~eLeeLe~ei~~L~~kl~~l  172 (473)
                      +..++..+...-..+...++.++.+...+.+....++.+|+.++..........  ..-...+..|+.+...+..++...
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~  209 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA  209 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHH
Q 011982          173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ  252 (473)
Q Consensus       173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q  252 (473)
                                              +........++...+.....++-..+..+.....   .+...++. ...+..++.-
T Consensus       210 ------------------------~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aek---eLekKfqq-T~ay~NMk~~  261 (278)
T PF15294_consen  210 ------------------------LQDKESQQKALEETLQSCKHELLRVQEQLSLAEK---ELEKKFQQ-TAAYRNMKEI  261 (278)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchh---hHHHHhCc-cHHHHHhHHH


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          253 VVELEESRNNLLQENRQ  269 (473)
Q Consensus       253 ~~eL~deRK~LwrEe~k  269 (473)
                      ++.-.++-|.|++.-.+
T Consensus       262 ltkKn~QiKeLRkrl~k  278 (278)
T PF15294_consen  262 LTKKNEQIKELRKRLAK  278 (278)
T ss_pred             HHhccHHHHHHHHHhcC

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=80.29  E-value=87  Score=33.47  Aligned_cols=17  Identities=12%  Similarity=0.247  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          262 NLLQENRQLKENVSSLR  278 (473)
Q Consensus       262 ~LwrEe~kL~~~i~~L~  278 (473)
                      .+|.-.......+.+++
T Consensus       302 di~E~~Es~qtRisklE  318 (395)
T PF10267_consen  302 DIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444445555554

Its function is unknown.

>PF13166 AAA_13: AAA domain

Probab=80.23  E-value=1.1e+02  Score=34.62  Aligned_cols=9  Identities=11%  Similarity=-0.064  Sum_probs=4.2

Q ss_pred             ceeecCCCc
Q 011982          388 INGVHADPP  396 (473)
Q Consensus       388 ~vvv~d~~a  396 (473)
                      .||+.|-++
T Consensus       530 iiViDDPIS  538 (712)
T PF13166_consen  530 IIVIDDPIS  538 (712)
T ss_pred             eEEECCCCC
Confidence            444466433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	9e-07
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	2e-05
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	9e-05
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	7e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	6e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.8 bits (215), Expect = 3e-18
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 17/271 (6%)

Query: 68   AESANLAEAE--RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE 125
            AE+   AEAE  R  L  ++  LEE +  +    E   ++   L+   +++Q +    +E
Sbjct: 903  AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962

Query: 126  KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS---- 181
            ++   E   Q+LQ +      K   +E+ I  + +QN+   +    LE  +++L +    
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 182  --EKEFWLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET 238
              EK   L K     E  IS+L          R  LE+  + LE +     +  +  +  
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 239  IAGLSV-------DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291
            IA L         ++     ++ +    +NN L++ R+L+ ++S L+  L S E      
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES-EKAARNK 1141

Query: 292  ATSEQKDFSTQIEAAGALIDKLITENIELVE 322
            A  +++D S ++EA    ++  +       E
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 54/274 (19%), Positives = 115/274 (41%), Gaps = 19/274 (6%)

Query: 75   EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK-------- 126
            + E Q   +R+   E  +K L  +     +++  L+   ++LQ E +LY E         
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ---EKLQAETELYAEAEEMRVRLA 919

Query: 127  --VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 184
                 LEE + +++ + +   ++   L+   K+++ Q     ++    E     LQ EK 
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979

Query: 185  FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 244
                K   +E  I  + D++  L  +R  LEER+  L  +     +      +       
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 245  DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATSEQKD 298
             I++L +++ + E+SR  L +  R+L+   S L  Q++  +++      +L     E + 
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

Query: 299  FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 332
               ++E   +  +  + +  EL   ++DL   L+
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 28/225 (12%), Positives = 75/225 (33%), Gaps = 16/225 (7%)

Query: 74   AEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEET 133
             + E+     +   +E+ +  + ++     ++   LE  V  L       +EK   L + 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 134  IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL 193
              + +        +    E++ ++L             L   IA LQ++      + A  
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 194  EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV 253
            E+++            ++ +  ++++ LE+               I+ L  D+   +   
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESH--------------ISDLQEDLESEKAAR 1139

Query: 254  VELEESRNNLLQENRQLKENVSSLRSQLS--SDESKKLQHATSEQ 296
             + E+ + +L +E   LK  +       +   +          ++
Sbjct: 1140 NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 52/311 (16%), Positives = 106/311 (34%), Gaps = 23/311 (7%)

Query: 82   LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQN 141
            L +    EE ++    E +   +++   E  +++L+ +     E+   L+E +Q      
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 142  DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 201
                +    L    ++L         R    E     LQ+EK+        ++Q++  L 
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK-------KMQQQMLDLE 961

Query: 202  DESAALNMKRASLEE-------RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV 254
            ++       R  L+        ++K +E D        +   +    L   ++ L   + 
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021

Query: 255  ELEESRNNLLQENRQLKENVSSLRSQLSSDES------KKLQHATSEQKDFSTQIEAAGA 308
            E EE   NL +   + +  +S L  +L  +E       K  +    E  D   QI    A
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

Query: 309  LIDKLITENIELVEKVNDLSVKLDR-QSVAAGLSSAIGS--DAVTALTSDTEPMSESSDN 365
             I +L  +  +  E++     +L+   S        I      ++ L  D E    + + 
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 366  MSSLNNRLETQ 376
                   L  +
Sbjct: 1142 AEKQKRDLSEE 1152

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 37/237 (15%), Positives = 93/237 (39%), Gaps = 11/237 (4%)

Query: 1    MEDEKKKKRNK----KKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNV 56
            ++ EKKK + +    +++  ++              +  I   +DD+     +   +   
Sbjct: 946  LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005

Query: 57   QVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQL 116
            +   +   S+   +    E + ++L + +   E  +  L    +   +    LE   ++L
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065

Query: 117  QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI 176
            + E     E++A L+  I +L+ Q   + ++       ++   +Q +  +++   LE +I
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125

Query: 177  ANLQSEKEFW------LQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKD 226
            ++LQ + E         +K+   L +++  L+ E        A+ +E       D D
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 2e-13
 Identities = 68/466 (14%), Positives = 160/466 (34%), Gaps = 131/466 (28%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQREAILEETVK---HLRNERESHIQK--E 106
           D ++VQ D  +        + L++ E  H++  +  +  T++    L +++E  +QK  E
Sbjct: 34  DCKDVQ-DMPK--------SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 107 ATLEGT----VQQLQNEC-------DLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI 155
             L       +  ++ E         +Y E+   L    Q   + N  R+Q    L + +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 156 KQLRNQNDLHIQREGG-----LEMNIAN---LQSEKE---FWL------QKEAALEQ--- 195
            +LR   ++ I    G     + +++     +Q + +   FWL        E  LE    
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 196 -------KISQLRDESAALNMKRASLEERLKLLEADK----------DSWTQMESVSKET 238
                    +   D S+ + ++  S++  L+ L   K          +        + + 
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKA 258

Query: 239 IAGLSVDITQLRMQVVELEESRN----NLLQENRQLKENVSSLRSQLSSDESKKL--QHA 292
               + ++   ++ +     +R     + L        ++      L+ DE K L  ++ 
Sbjct: 259 WN--AFNL-SCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 293 TSEQKDFSTQIEAAGALIDKLITE---------------NIELVEKVNDLSVK-LD---- 332
               +D   ++         +I E               N + +  + + S+  L+    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 333 RQS-VAAGL---SSAIGSDAVTALTSDTEPMSESSDNMSSLNNR--LETQGVVAVKEDRN 386
           R+      +   S+ I +  ++ +  D    S+    ++ L+    +E Q     KE   
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQP----KESTI 426

Query: 387 GINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESY 432
            I  ++ +                 +++ L+++    L   +V+ Y
Sbjct: 427 SIPSIYLE-----------------LKVKLENE--YALHRSIVDHY 453

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 38/210 (18%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 73   LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEE 132
            L    R+ + +RE    + +K      E + +    LE  + QLQ + D   ++  +L E
Sbjct: 893  LQCCYRRMMAKRE---LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 133  TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 192
             +  L+       +K  +  E ++    +      R   L+  IA L+ E      ++  
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 193  LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 252
            +E+   + + E        + L+E+  LL+ +K+   +                 ++  Q
Sbjct: 1010 IEEWADKYKHE---TEQLVSELKEQNTLLKTEKEELNR-----------------RIHDQ 1049

Query: 253  VVELEESRNNLLQ-ENRQLKENVSSLRSQL 281
              E+ E+    L  E +QL+ +++  R + 
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 34/215 (15%), Positives = 85/215 (39%), Gaps = 14/215 (6%)

Query: 73   LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEE 132
            LA       L+    L+   + +  +RE    K      +V++ +      + K+  L+ 
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE--ARSVERYKKLHIGLENKIMQLQR 935

Query: 133  TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 192
             I +  ++    ++K   LE T      +    ++R       +   + E +    +  +
Sbjct: 936  KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER-------LRMSEEEAKNATNRVLS 988

Query: 193  LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 252
            L+++I++LR E      ++ ++EE     + + +   Q+ S  KE    L  +  +L  +
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRR 1045

Query: 253  VVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287
            + +  +     ++  ++L E    L   L+ +  +
Sbjct: 1046 IHDQAKEITETME--KKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 30/236 (12%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 69   ESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA 128
            +   +    +  ++Q+         H     ++ +  +      + + +       +K+ 
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE------LKKLK 910

Query: 129  TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188
                ++++ ++ +     K   L+  I +   +          L   + NL+       +
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK-------SLLEKMNNLEITYSTETE 963

Query: 189  KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 248
            K  +  +++    +E+     +  SL+E +  L  +       +   +E       +  Q
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023

Query: 249  LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIE 304
            L   V EL+E    L  E  +L   +     +++    KKL     E K     + 
Sbjct: 1024 L---VSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV---EETKQLELDLN 1073

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 42/266 (15%), Positives = 102/266 (38%), Gaps = 22/266 (8%)

Query: 81   LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ 140
            ++Q+   +    K  +  R++ I  +A L G + + + +  L + K   +++ ++    +
Sbjct: 821  IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR 880

Query: 141  NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 200
                   +A +       R      +++   L++   +++  K+        LE KI QL
Sbjct: 881  VHYHRTLKAIVYLQCCYRRMMAKRELKK---LKIEARSVERYKK----LHIGLENKIMQL 933

Query: 201  RDESAALNMKRASLEERLKLLEADKDSWT--------------QMESVSKETIAGLSVDI 246
            + +    N +  SL E++  LE    + T              +    +   +  L  +I
Sbjct: 934  QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993

Query: 247  TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK-KLQHATSEQKDFSTQIEA 305
             +LR ++ + +  +  + +   + K     L S+L    +  K +     ++      E 
Sbjct: 994  AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053

Query: 306  AGALIDKLITENIELVEKVNDLSVKL 331
               +  KL+ E  +L   +ND  ++ 
Sbjct: 1054 TETMEKKLVEETKQLELDLNDERLRY 1079

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 171 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD----KD 226
           G+   ++  Q++ +  LQ    LE  + Q+ ++++ +     +++      E+      D
Sbjct: 24  GIADFLSTYQTKVDKDLQS---LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMID 80

Query: 227 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286
           + T       E I      I      +  L+E  N+  Q+   LKE V+ L +Q      
Sbjct: 81  AATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 140

Query: 287 KKLQHATSEQKD 298
             +Q      KD
Sbjct: 141 DTVQIHDITGKD 152

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 56  VQVDADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQK----EATLEG 111
           +      +Q+   +     E     +  + + +++ +K ++                   
Sbjct: 25  IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATL 84

Query: 112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 162
             +++  E   Y+  + T + +I+ LQ   +   QK   L+E + QL  Q 
Sbjct: 85  KSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 93  KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152
             L  + ++       L+  V +  +      + V  ++  + + Q+Q        +   
Sbjct: 89  TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148

Query: 153 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 202
             ++   N    ++     +  ++  L++  +   +K   LE  I+   D
Sbjct: 149 TEMELHYNYIKDNLDNN--IPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 77  ERQHLLQREAI--LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 134
            +Q    +  +  L++ V    +   +  Q    ++  + + Q +       ++     +
Sbjct: 92  LKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151

Query: 135 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 181
           +     N ++   +  +  +++ LR   D   ++   LE  IA    
Sbjct: 152 ELH--YNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 26/274 (9%), Positives = 80/274 (29%), Gaps = 6/274 (2%)

Query: 63  HQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDL 122
            QS  A +   A+   + + Q           L +       ++ + +   Q +  +   
Sbjct: 370 QQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRS 429

Query: 123 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN--QNDLHIQREGGLEMNIANLQ 180
             E+   ++   Q ++   +L  +    L+E+++ L      D  ++ +           
Sbjct: 430 VIEQ-GGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSN 488

Query: 181 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW-TQMESVSKETI 239
              +    +       + +       +     S  + + LL   +      + S +    
Sbjct: 489 ELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKT 548

Query: 240 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS--DESKKLQHATSEQK 297
              S  +  L+  +  L+E +         LK     + S+  +   +   +        
Sbjct: 549 MQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVT 608

Query: 298 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331
           +           + + + +   L++ +     + 
Sbjct: 609 ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEF 642

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 131 EETIQQLQRQNDLRMQ-KEATLEETIKQLRNQ-----NDLHIQREGGLEMNIA-NLQSEK 183
            E+I++ + +   R+Q  +A  +   ++ R +      + + ++   +E N   N  ++K
Sbjct: 84  PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143

Query: 184 EFWLQKEAAL 193
            F+ Q +A +
Sbjct: 144 AFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
3l51_B	166	Structural maintenance of chromosomes protein 4; s	99.26
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	99.2
3nwc_A	189	SMC protein; structural maintenance of chromosomes	99.18
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.16
3l51_A	161	Structural maintenance of chromosomes protein 2; s	99.02
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	98.86
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.74
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.71
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	98.53
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	98.42
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.91
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.89
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.89
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	97.8
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.8
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.4
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.38
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	97.32
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.08
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.82
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	96.75
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.68
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	96.59
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.54
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	96.48
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.3
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	96.0
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	95.86
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.39
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.39
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.31
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	94.72
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.61
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	94.6
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.06
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.65
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.61
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.5
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	93.34
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.2
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	92.54
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.52
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.4
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.34
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.66
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.56
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	91.46
3bas_A	89	Myosin heavy chain, striated muscle/general contro	90.41
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.1
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.74
3ibp_A	302	Chromosome partition protein MUKB; structural main	89.45
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.23
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	88.97
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	88.52
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.52
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	88.52
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.98
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.97
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	87.62
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	87.56
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	87.02
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	86.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.47
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	86.15
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	86.09
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.08
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	85.09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	84.83
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.73
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	84.31
1z2t_A	26	Anchor peptide Ser65-Leu87 of ALMGS; lipid binding	83.58
3bas_A	89	Myosin heavy chain, striated muscle/general contro	83.29
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	83.1
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	83.07
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	82.52
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	80.89
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	80.22
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	80.06

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0

Probab=99.26  E-value=3.5e-13  Score=124.00  Aligned_cols=78  Identities=12%  Similarity=-0.007  Sum_probs=68.5

Q ss_pred             hhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc-ceee-cCCCchhhhcccccccCCceeeecCC
Q 011982          340 LSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG-INGV-HADPPPLVLSSSEAEYSGEIVQIPLD  417 (473)
Q Consensus       340 l~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns-~vvv-~d~~a~~~~~~~~~~~~gritf~PLn  417 (473)
                      |.++.+..++.+++||||+|+||+.   | +++|++|+|   +..|.. |||| ++++|..++++|.+.+.||+||||||
T Consensus         4 ~~~l~~~~~~~~~~Gv~G~v~dLi~---v-~~~y~~Aie---~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~   76 (166)
T 3l51_B            4 LDAIIQEKKSGRIPGIYGRLGDLGA---I-DEKYDIAIS---SCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLD   76 (166)
T ss_dssp             HHHHHHHHHHTSSTTEEEEGGGSCB---C-CGGGHHHHH---HHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGG
T ss_pred             HHHHHHHHHhCCCCCceEEHHHhee---e-CHHHHHHHH---HHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECc
Confidence            5566777778889999999999999   8 899999999   777733 9999 99999999999999999999999999


Q ss_pred             CCCcchh
Q 011982          418 DKEVQDL  424 (473)
Q Consensus       418 ~~~~~~~  424 (473)
                      .+.++..
T Consensus        77 ~i~~~~~   83 (166)
T 3l51_B           77 KMTVWAK   83 (166)
T ss_dssp             GTGGGTT
T ss_pred             ccccccc
Confidence            9986543

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=99.20  E-value=1.6e-12  Score=123.21  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhccccccc-CCceeeecCCCCCcchhhhc
Q 011982          352 LTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEY-SGEIVQIPLDDKEVQDLELQ  427 (473)
Q Consensus       352 l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~-~gritf~PLn~~~~~~~~~~  427 (473)
                      ++|+||||++++.   | +++|++|+|   ++.|+.  |||| ++.+|..++.+|...+ .||+|||||+.+.++.+  .
T Consensus        46 ~~g~~g~l~dli~---v-~~~~e~Ave---~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~~~~~--~  116 (213)
T 2wd5_B           46 QNGYHGIVMNNFE---C-EPAFYTCVE---VTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDT--A  116 (213)
T ss_dssp             HTTEEEEGGGSEE---C-CGGGHHHHH---HHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCCCCCC--C
T ss_pred             CCCceeeHHHhcc---c-CHHHHHHHH---HHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccCcccC--C
Confidence            6889999999999   8 899999999   999988  8888 7789999999998776 99999999999887665  4


Q ss_pred             cccccCCCCcccccCCc
Q 011982          428 VVESYTDKVAAVPLTDA  444 (473)
Q Consensus       428 ~p~~~~~~~~~vPl~~~  444 (473)
                      +|.    ...++|+++.
T Consensus       117 ~~~----~~~~~~l~~~  129 (213)
T 2wd5_B          117 YPE----TNDAIPMISK  129 (213)
T ss_dssp             CCC----CSSEEEGGGG
T ss_pred             CCC----CCCceeHHHH
Confidence            554    3567787776

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}

Probab=99.18  E-value=1.4e-12  Score=122.62  Aligned_cols=94  Identities=6%  Similarity=-0.034  Sum_probs=73.0

Q ss_pred             HHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCcccccc-ccccccccccccCCc--ceee-cCC
Q 011982          319 ELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNR-LETQGVVAVKEDRNG--INGV-HAD  394 (473)
Q Consensus       319 ~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~-~~t~~e~~~~~agns--~vvv-~d~  394 (473)
                      .+..|++-|..+.+. .-.+|+.++   . +..++||||||++|+.   | +++ |++|+|   ++.|+.  +||| +++
T Consensus         5 ~~~~r~~~l~~~~~~-~~~~~v~~l---~-~~~~~gv~G~l~dLi~---V-~~~kye~Ave---~aLG~~l~~iVVd~~~   72 (189)
T 3nwc_A            5 SSERELIAAEAQREV-RGNRAAEEL---K-RSGIGGIYGTLAELIK---V-KDEAYALAIE---VALGNRADNVVVEDEL   72 (189)
T ss_dssp             HHHHHHHHHHHHHHH-SSCTHHHHH---T-TSCCCSEEEEHHHHCE---E-SCGGGHHHHH---HHHGGGGGCEEESSHH
T ss_pred             HHHHHHHHHHHHHHh-hHHHHHHHH---H-hcCCCCceEEHHHhee---e-ChhhHHHHHH---HHhccccccEEECCHH
Confidence            344566666655544 223444333   2 2468999999999999   8 666 999999   999888  9999 889


Q ss_pred             CchhhhcccccccCCceeeecCCCCCcchh
Q 011982          395 PPPLVLSSSEAEYSGEIVQIPLDDKEVQDL  424 (473)
Q Consensus       395 ~a~~~~~~~~~~~~gritf~PLn~~~~~~~  424 (473)
                      +|..++++|...+.||+||||||.+.+++.
T Consensus        73 ~A~~~i~~Lk~~~~GRatflpl~~i~~~~~  102 (189)
T 3nwc_A           73 VAEKAIKYLKEHKLGRLTFLPLNKIKPKHV  102 (189)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEETTTCCCCCC
T ss_pred             HHHHHHHHHHhcCCCceEEEECCccccccC
Confidence            999999999988999999999999987543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.16  E-value=7.9e-07  Score=84.18  Aligned_cols=92  Identities=9%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  167 (473)
Q Consensus        88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~  167 (473)
                      ++..+..++.++..+...+..++..+..+...+......+..+...+..++..+.........+...+..+...+..+..
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (284)
T 1c1g_A            4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA   83 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555444444444444444444444444444


Q ss_pred             HhhchHHHHHHH
Q 011982          168 REGGLEMNIANL  179 (473)
Q Consensus       168 kl~~le~rl~~L  179 (473)
                      .+..+..++..+
T Consensus        84 ~~~~~~~~~~~~   95 (284)
T 1c1g_A           84 DVASLNRRIQLF   95 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444333333333

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}

Probab=99.02  E-value=2.7e-11  Score=110.63  Aligned_cols=96  Identities=13%  Similarity=0.016  Sum_probs=70.3

Q ss_pred             ccCCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhh
Q 011982          349 VTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLE  425 (473)
Q Consensus       349 ~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~  425 (473)
                      +.++.||||+|++|+.   |.+.+|++|+|   +..|+.  |||| ++++|..+++++  ...||+||||||.+.++.+.
T Consensus        11 ~~~~~gv~G~v~dLi~---v~d~~y~~Ave---~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~   82 (161)
T 3l51_A           11 NWNRNSVKGLVASLIN---VKDNSTATALE---VVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIA   82 (161)
T ss_dssp             TCCGGGEEEEGGGSCE---ESCGGGHHHHH---HHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCC
T ss_pred             CCCcCccEEEHHHhee---eCchhHHHHHH---HHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcC
Confidence            4567899999999999   73479999999   989888  9999 999999999986  35899999999999875531


Q ss_pred             ---hccccccCCCCcccccCCc----cccCcchh
Q 011982          426 ---LQVVESYTDKVAAVPLTDA----PLIGAPFR  452 (473)
Q Consensus       426 ---~~~p~~~~~~~~~vPl~~~----~~~~~~f~  452 (473)
                         +++|........+.|++|.    |.|.++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~a~dlv~~d~~~~~a~~  116 (161)
T 3l51_A           83 PETLRVAQNLVGPDNVHVALSLVDYKPELQKGME  116 (161)
T ss_dssp             HHHHHHHHHHHCTTSEEEGGGGEECCGGGHHHHH
T ss_pred             HHHHhhhhhcCCCcchhHHHHHhcCCHHHHHHHH
Confidence               1122100001235566665    66666664

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=98.86  E-value=1.9e-10  Score=110.95  Aligned_cols=67  Identities=10%  Similarity=-0.002  Sum_probs=58.2

Q ss_pred             Ccc-ccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchh
Q 011982          352 LTS-DTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDL  424 (473)
Q Consensus       352 l~~-v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~  424 (473)
                      ++| +||||++++.   |.+++|++|+|   +..|+.  +||| ++.+|..++.+|...+.||+|||||+.+.++..
T Consensus        51 ~~g~v~G~l~dli~---v~~~~ye~Ave---~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~  121 (233)
T 2wd5_A           51 YPGSVYGRLIDLCQ---PTQKKYQIAVT---KVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT  121 (233)
T ss_dssp             SGGGEEEEHHHHEE---ESSGGGHHHHH---HHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCC
T ss_pred             CCCCeeeeHHHhce---eCcHHHHHHHH---HHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCc
Confidence            688 9999999999   64699999999   888887  8888 678999999999888899999999999865443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.74  E-value=1.4e-08  Score=118.48  Aligned_cols=31  Identities=23%  Similarity=0.140  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           90 ETVKHLRNERESHIQKEATLEGTVQQLQNEC  120 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei  120 (473)
                      ..+..++..+..+...+..++.+...+..++
T Consensus       871 ~~L~~le~~l~ele~~l~~Le~e~~~l~~~L  901 (1184)
T 1i84_S          871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKL  901 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.71  E-value=3.8e-08  Score=114.99  Aligned_cols=30  Identities=10%  Similarity=0.188  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           94 HLRNERESHIQKEATLEGTVQQLQNECDLY  123 (473)
Q Consensus        94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~  123 (473)
                      .++.++..+...+..++..+.++..++..+
T Consensus       861 ~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1

Probab=98.53  E-value=2.1e-08  Score=94.14  Aligned_cols=65  Identities=11%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcc
Q 011982          351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQ  422 (473)
Q Consensus       351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~  422 (473)
                      .+.|+||||++++.   | +++|++|+|   +..|+.  +||| ++.+|..++.+|.....||+||+||+.+.++
T Consensus        40 ~~~g~~g~l~~li~---v-~~~~e~Ave---~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~  107 (213)
T 1gxl_A           40 RFPGLVDVVSNLIE---V-DEKYSLAVS---VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS  107 (213)
T ss_dssp             SCTTEEEEGGGTCB---C-CHHHHHHHH---HHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCC
T ss_pred             hhCCCceehhheee---e-CHHHHHHHH---HHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCC
Confidence            57899999999999   8 899999999   888888  8888 6788888999998778999999999998754

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A

Probab=98.42  E-value=1.9e-08  Score=92.92  Aligned_cols=65  Identities=11%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcc
Q 011982          351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQ  422 (473)
Q Consensus       351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~  422 (473)
                      .+.|+||+|++++.   | +++|++|+|   +..|+.  |||| ++.+|..++++|...+.||+||+||+.+.++
T Consensus        28 ~~~g~~g~l~~li~---v-~~~~e~Ave---~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~   95 (186)
T 1gxj_A           28 RFPGLVDVVSNLIE---V-DEKYSLAVS---VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS   95 (186)
T ss_dssp             GCTTEEEEHHHHCB---C-CGGGHHHHH---HHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCC
T ss_pred             hhCCcceehhheec---c-CHHHHHHHH---HHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCC
Confidence            57899999999999   8 899999999   888888  8888 6789999999998888999999999998754

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.91  E-value=0.0029  Score=61.56  Aligned_cols=9  Identities=33%  Similarity=0.656  Sum_probs=5.9

Q ss_pred             cCCceeeec
Q 011982          407 YSGEIVQIP  415 (473)
Q Consensus       407 ~~gritf~P  415 (473)
                      .-|||.|.+
T Consensus       227 ~CgRIL~~~  235 (256)
T 3na7_A          227 YCGRILYAE  235 (256)
T ss_dssp             TTCCEEECS
T ss_pred             CCCeeEEeC
Confidence            567777754

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.89  E-value=0.0042  Score=60.36  Aligned_cols=46  Identities=11%  Similarity=0.112  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982          198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS  243 (473)
Q Consensus       198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~  243 (473)
                      ..+..++..+..++..++.++..+...++.+...+......+..+.
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~  138 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE  138 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444333333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.89  E-value=0.003  Score=58.78  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          151 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE----QKISQLRDESAALNMKRASLEERLKLLEADKD  226 (473)
Q Consensus       151 le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le----~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~  226 (473)
                      ++.+|..+++.+..|..+.       ..++.+.+.|-.+.....    ..++.++.++..+......+...|..|+..-+
T Consensus        47 LE~eL~~~Ek~~~~L~~~~-------~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND  119 (189)
T 2v71_A           47 LEAQLVQAEQRNRDLQADN-------QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND  119 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444444444433       345566666655544333    34788888888888888888888888888888


Q ss_pred             HHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          227 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       227 ~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      .|....-.....+.+++..++.+-....-|..+..    +...|.-.+++|++++..+...+
T Consensus       120 dlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~rDLk~El  177 (189)
T 2v71_A          120 DLERAKRATIMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEARDLRQEL  177 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC--------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777778888888888888777777775554    23444555555555555444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.80  E-value=0.012  Score=54.80  Aligned_cols=147  Identities=12%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           70 SANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA  149 (473)
Q Consensus        70 ~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~  149 (473)
                      .--|++.|-..|...=........+++.+.......-..||..   |..++.....+...+...+..|..++..|..+..
T Consensus         4 ~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~   80 (189)
T 2v71_A            4 DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE   80 (189)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446778888888877888888888888888887777766643   4556666666666677777777777777666655


Q ss_pred             HHHHH----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          150 TLEET----IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK  219 (473)
Q Consensus       150 ~le~e----LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie  219 (473)
                      ....+    +..|+.++..+......+..++..+....|.+-+..=.+...+..+..-+...-.+..-|+.++.
T Consensus        81 ~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A           81 HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433    66666666666666666666666666666665555544444555444444444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.40  E-value=0.033  Score=50.69  Aligned_cols=62  Identities=10%  Similarity=0.078  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          109 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG  170 (473)
Q Consensus       109 LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~  170 (473)
                      |+.++.+++..+..-.+....+.+...++...+...+....++...+..|......|...+.
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~   72 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYY   72 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444443333333333444444433333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.38  E-value=0.048  Score=49.64  Aligned_cols=131  Identities=11%  Similarity=0.069  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          125 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES  204 (473)
Q Consensus       125 qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el  204 (473)
                      .++..|+.++.+++..+..-......+.....++......+.....+++.+...+...++.+-+.-+.|+..+..=+...
T Consensus         6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r   85 (168)
T 3o0z_A            6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR   85 (168)
T ss_dssp             ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555554444555555555555555555555555555555555555554444434444444333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 011982          205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN  262 (473)
Q Consensus       205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~  262 (473)
                      ......+.+++.       .|..|..++......+.....+...|...+..|..+..+
T Consensus        86 ~q~se~~~elq~-------ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~  136 (168)
T 3o0z_A           86 GHDSEMIGDLQA-------RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN  136 (168)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333       333333333333334444444444444444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=97.32  E-value=0.0022  Score=52.42  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT  229 (473)
Q Consensus       150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~  229 (473)
                      .++.+|..+......+..++..++....+|+..++..+.....+++++..++..++.+.....+|+.+++.|..+|.+|+
T Consensus         4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A            4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666677777777777778888889999999999999999999999999999999999999999999999999986


Q ss_pred             H
Q 011982          230 Q  230 (473)
Q Consensus       230 ~  230 (473)
                      +
T Consensus        84 k   84 (86)
T 3swk_A           84 K   84 (86)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.08  E-value=0.8  Score=58.40  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=26.8

Q ss_pred             HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          225 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       225 I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      +..++.++....+.+...+.++.++..++..|+++...+.+|...|...++.++..+.+|+.-+
T Consensus      2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A         2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444444444444444444444444444444444443333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.06  E-value=0.16  Score=45.70  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           82 LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  161 (473)
Q Consensus        82 ~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~e  161 (473)
                      .+.|.+|+......+........    ++..+.....+......+...|+..+..+-..+.+.+........+-..++.+
T Consensus         3 ~~lE~qlkeaae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeq   78 (155)
T 2efr_A            3 KQLEDKVEELLSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEE   78 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence            35556666553333333333222    77777777777777777777777777777777776666666666666666666


Q ss_pred             HHHHHHHhhchHHHH
Q 011982          162 NDLHIQREGGLEMNI  176 (473)
Q Consensus       162 i~~L~~kl~~le~rl  176 (473)
                      +..|..++..++.|.
T Consensus        79 Ik~L~~kLKEAE~RA   93 (155)
T 2efr_A           79 IKVLSDKLKEAETRA   93 (155)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666655555444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.82  E-value=0.038  Score=64.03  Aligned_cols=81  Identities=11%  Similarity=0.113  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  287 (473)
Q Consensus       208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~  287 (473)
                      ..+...++..+..|+.+++.++.++..+..+...+++....++   +.|+++...|..|...|+..++.|...+...+..
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555554   3566777777777777777777777666665554


Q ss_pred             HHhh
Q 011982          288 KLQH  291 (473)
Q Consensus       288 l~~a  291 (473)
                      ....
T Consensus      1053 ~~~~ 1056 (1080)
T 2dfs_A         1053 ITET 1056 (1080)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.75  E-value=0.015  Score=50.85  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             hhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          296 QKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       296 ~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                      +..++.+|..++..+.++..||+.|++
T Consensus        84 i~~lE~eL~~~r~e~~~ql~EYq~Lln  110 (129)
T 3tnu_B           84 LAELEEALQKAKQDMARLLREYQELMN  110 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334777888888889999999999998

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.68  E-value=0.2  Score=43.65  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      .|+..|..+...+.........|......++.++..|..++
T Consensus        80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l  120 (129)
T 2fxo_A           80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI  120 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.59  E-value=0.013  Score=51.28  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHH
Q 011982          180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE  258 (473)
Q Consensus       180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~d  258 (473)
                      +.+-+.|-+..+ .+..........+...+.++..+...|..|+.+|+.+......++..|.+.+...            
T Consensus         8 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~------------   75 (131)
T 3tnu_A            8 RKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY------------   75 (131)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------------
Confidence            556677777776 6666666555555555555555555555555555444443333333333222211            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982          259 SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE  322 (473)
Q Consensus       259 eRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~  322 (473)
                                         ..++..+..        .+..++.+|..++..+.++..||++|++
T Consensus        76 -------------------~~~l~~~q~--------~i~~lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           76 -------------------CMQLAQIQE--------MIGSVEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             -------------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               111111111        2334677888888888999999999998

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.54  E-value=1.4  Score=56.31  Aligned_cols=29  Identities=17%  Similarity=0.225  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          259 SRNNLLQENRQLKENVSSLRSQLSSDESK  287 (473)
Q Consensus       259 eRK~LwrEe~kL~~~i~~L~~eL~~ae~~  287 (473)
                      --..|-.|..+=...+..+...+.++-.+
T Consensus      2078 Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2078 LLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence            33344444444444455555555554443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=96.48  E-value=0.047  Score=45.07  Aligned_cols=37  Identities=19%  Similarity=0.137  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK  147 (473)
Q Consensus       111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk  147 (473)
                      .+++.|+++++++..++..||.+.+.|..+|..+..+
T Consensus         9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~   45 (93)
T 3s4r_A            9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ   45 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4689999999999999999999999999998888764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.30  E-value=0.13  Score=59.61  Aligned_cols=21  Identities=29%  Similarity=0.454  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011982          197 ISQLRDESAALNMKRASLEER  217 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leee  217 (473)
                      +..++.++..+..+...+++.
T Consensus       993 ~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A          993 IAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=96.00  E-value=0.1  Score=45.39  Aligned_cols=98  Identities=20%  Similarity=0.272  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH----HHHHHHHHH
Q 011982          180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD----ITQLRMQVV  254 (473)
Q Consensus       180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e----~~~Lk~q~~  254 (473)
                      +.+-+.|-+..+ .+..........+...+.++..+...|..|+.+|+.+......++..|.+.+..    +.+++..+.
T Consensus         6 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~   85 (129)
T 3tnu_B            6 RTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLA   85 (129)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566776666 666666666666666666666666666666666666666666666555555432    334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 011982          255 ELEESRNNLLQENRQLKENVSSL  277 (473)
Q Consensus       255 eL~deRK~LwrEe~kL~~~i~~L  277 (473)
                      .|..+...++.+.....+..+.|
T Consensus        86 ~lE~eL~~~r~e~~~ql~EYq~L  108 (129)
T 3tnu_B           86 ELEEALQKAKQDMARLLREYQEL  108 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=95.86  E-value=0.094  Score=45.81  Aligned_cols=83  Identities=19%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS  276 (473)
Q Consensus       197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~  276 (473)
                      |..++..+++|..++..+......|+..|...+.   .+...+..++..+..+..++..+....-...+|-+.|-..--.
T Consensus        40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~  116 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR  116 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444433   2233444444444444444444444444444444444444444


Q ss_pred             HHHHHH
Q 011982          277 LRSQLS  282 (473)
Q Consensus       277 L~~eL~  282 (473)
                      |..++.
T Consensus       117 Ld~EIa  122 (131)
T 3tnu_A          117 LEQEIA  122 (131)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.39  E-value=1.2  Score=38.57  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  230 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~  230 (473)
                      .+...+.........|......++.+|..|..+|+.+..
T Consensus        87 el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           87 EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555556666666666666665543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.39  E-value=1.4  Score=39.43  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          102 HIQKEATLEGTVQQLQNECDLYKEKVA  128 (473)
Q Consensus       102 l~q~~a~LE~kikeL~eei~~~~qk~~  128 (473)
                      .+.+.+.|+.++..+..++.....++.
T Consensus        11 Ain~qs~LeD~L~~~R~el~~~~~ri~   37 (154)
T 2ocy_A           11 SVDKQSHLEEQLNKSLKTIASQKAAIE   37 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.31  E-value=1.5  Score=39.30  Aligned_cols=58  Identities=21%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH
Q 011982          189 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI  246 (473)
Q Consensus       189 kEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~  246 (473)
                      ++...+.+|..+...+.....+....+..+..|+.+|+.+...+...+.....+..++
T Consensus        71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL  128 (155)
T 2efr_A           71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM  128 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555566666666666666666666666666666666555544444433333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=94.72  E-value=1.3  Score=36.64  Aligned_cols=56  Identities=13%  Similarity=0.194  Sum_probs=33.4

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982          236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  291 (473)
Q Consensus       236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a  291 (473)
                      ...-..+..++..+..+...|..+-...|++...+...+-.+.+++..++..+..+
T Consensus        31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~   86 (96)
T 3q8t_A           31 EKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA   86 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444445555556666677777777777777777777766666555

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=94.60  E-value=1.2  Score=36.74  Aligned_cols=70  Identities=11%  Similarity=0.116  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l  288 (473)
                      ..++.++..+..+...+...|..+..+...+..++..+..+-..|-.++.+.|+....+.-.+-.....+
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~   76 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDEL   76 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555555555555555555555555555555555555555555555555555544444444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.06  E-value=0.84  Score=36.58  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          218 LKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  287 (473)
Q Consensus       218 ie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~  287 (473)
                      ++.|+..|..+-+.|.-+..++..++.++..|..+..++...|..|.++...|......-+..|..+-..
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555555555556666666666666666666666666666666666666666666665555443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.65  E-value=2.9  Score=35.42  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH
Q 011982          172 LEMNIANLQSEKEFWLQKEAAL----EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT  247 (473)
Q Consensus       172 le~rl~~LK~ERD~wLqkEi~L----e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~  247 (473)
                      |+.+...|..|++.|-.+....    ...++.++.++..+......+...|..|+..-+.|.-..-.....+.+++..++
T Consensus         8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n   87 (111)
T 2v66_B            8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN   87 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence            4444555677777777666533    345777888888888888888888888888888887766666677777777777


Q ss_pred             HHHHHHHHHHHHHH
Q 011982          248 QLRMQVVELEESRN  261 (473)
Q Consensus       248 ~Lk~q~~eL~deRK  261 (473)
                      .+-....=|..+..
T Consensus        88 ~aiErnalLE~El~  101 (111)
T 2v66_B           88 QAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666665554443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.61  E-value=1.2  Score=36.92  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=41.4

Q ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHH
Q 011982          238 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL-SSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE  316 (473)
Q Consensus       238 ~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL-~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~E  316 (473)
                      +++....++..|...+..-...|...-.+...+...+..|...| +.|..+|..+                      -.+
T Consensus        20 ~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a----------------------r~e   77 (97)
T 2eqb_B           20 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA----------------------RKE   77 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence            33334444444555555555555555555555555555555443 3355555444                      234


Q ss_pred             HHHHHHhhhhhhhhhhhhh
Q 011982          317 NIELVEKVNDLSVKLDRQS  335 (473)
Q Consensus       317 y~~L~~k~neL~~~~~~~~  335 (473)
                      ...+..|+..|..|+.|.+
T Consensus        78 ~~~~e~kn~~L~~qL~d~d   96 (97)
T 2eqb_B           78 KYAIEILNKRLTEQLREKD   96 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            5566677778888777764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.50  E-value=2.4  Score=37.30  Aligned_cols=44  Identities=14%  Similarity=0.245  Sum_probs=17.3

Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          237 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  280 (473)
Q Consensus       237 e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~e  280 (473)
                      .++..+..++..++.+++.+..+...|.++...|...+..|+.+
T Consensus        89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444333334444444444444444333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.34  E-value=4.3  Score=36.36  Aligned_cols=91  Identities=18%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  271 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~  271 (473)
                      ....++..+...+..-.......+.....++.+++.|+..+   +++-..|=   ...+.++..+...-..|......-.
T Consensus        55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL---FeEAN~MV---a~ar~~~~~~e~r~~~L~~ql~e~~  128 (154)
T 2ocy_A           55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---FDEANNMV---ADARKEKYAIEILNKRLTEQLREKD  128 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666777777777888888888888888743   33222221   2334444444444444555555555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011982          272 ENVSSLRSQLSSDESKK  288 (473)
Q Consensus       272 ~~i~~L~~eL~~ae~~l  288 (473)
                      ..+..++..|..++.-+
T Consensus       129 ~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          129 TLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555544433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.20  E-value=2.2  Score=44.99  Aligned_cols=94  Identities=11%  Similarity=0.056  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011982          191 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQ  269 (473)
Q Consensus       191 i~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~-~Lk~q~~eL~deRK~LwrEe~k  269 (473)
                      .++...|..+++.+..+.+...+...-+..+-+.+..-..+..+...    .-.++. +|+.++..|+.+..+-.....-
T Consensus        60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN----tynE~S~ELRRrIqyLKekVdnQlsnIrv  135 (562)
T 3ghg_A           60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN----TYNRVSEDLRSRIEVLKRKVIEKVQHIQL  135 (562)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH----HHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566665555555444444444433333333221111111111    111222 4444555555555444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011982          270 LKENVSSLRSQLSSDESKK  288 (473)
Q Consensus       270 L~~~i~~L~~eL~~ae~~l  288 (473)
                      |+..|..+..+++++|..+
T Consensus       136 LQsnLedq~~kIQRLEvDI  154 (562)
T 3ghg_A          136 LQKNVRAQLVDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666555

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=92.54  E-value=3.1  Score=43.61  Aligned_cols=78  Identities=12%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQ  138 (473)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq  138 (473)
                      ++--+||+|  |-|     ...+...+..++..+.+|+.....+.+.......-++.|+..+.....++...+..++.+.
T Consensus        76 ~~G~~CPTt--C~l-----~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~  148 (464)
T 1m1j_B           76 ELGVLCPTG--CEL-----QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN  148 (464)
T ss_dssp             TTCEEEECT--THH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCcCCCc--cHH-----HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            467789998  444     4456667777788888888888777766666666666666666655555555555555554


Q ss_pred             HHHHH
Q 011982          139 RQNDL  143 (473)
Q Consensus       139 ~eI~~  143 (473)
                      ..++.
T Consensus       149 ~~~e~  153 (464)
T 1m1j_B          149 TEMEL  153 (464)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.52  E-value=4  Score=33.84  Aligned_cols=54  Identities=22%  Similarity=0.290  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  227 (473)
Q Consensus       174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~  227 (473)
                      .++..++.+.|.|+..-..++..+.........+..++.+|...+..++.+++.
T Consensus         9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~   62 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ   62 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            345556777777777666666665555444444444444444444444444433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.40  E-value=4.1  Score=33.74  Aligned_cols=28  Identities=11%  Similarity=0.303  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           92 VKHLRNERESHIQKEATLEGTVQQLQNE  119 (473)
Q Consensus        92 i~qlE~E~~~l~q~~a~LE~kikeL~ee  119 (473)
                      +..+..+...+..+...++.+++.+...
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~   38 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEER   38 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333443433333333333333333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.34  E-value=2.4  Score=33.91  Aligned_cols=59  Identities=17%  Similarity=0.264  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 011982           93 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT-------LEETIQQLQRQNDLRMQKEATL  151 (473)
Q Consensus        93 ~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~-------LE~eLkeLq~eI~~~eqke~~l  151 (473)
                      .+|+..+..++..++-+...+.+|+.+...+.+....       +..++..|+.+...|..++..+
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444433       4444444444444444443333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.66  E-value=5  Score=33.13  Aligned_cols=52  Identities=21%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK  225 (473)
Q Consensus       174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI  225 (473)
                      .++..++.+.|.|+..-..++..+.........+..++..|...+..++.++
T Consensus         9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el   60 (101)
T 3u59_A            9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV   60 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3455567777777777666666665544444444444444443333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.56  E-value=2  Score=37.84  Aligned_cols=9  Identities=11%  Similarity=0.050  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 011982          206 ALNMKRASL  214 (473)
Q Consensus       206 ~L~~ei~~L  214 (473)
                      +++.++..+
T Consensus        93 ~lK~el~~~  101 (138)
T 3hnw_A           93 DLKHELIAA  101 (138)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=91.46  E-value=2.1  Score=38.17  Aligned_cols=63  Identities=17%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL  270 (473)
Q Consensus       208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL  270 (473)
                      ...+..|+.++..++..|..+..++..-...+..+..++..|+-+++.+.++.+.|..|...|
T Consensus        67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335555555566666666666665555556666666666666667777777777766666544

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=90.41  E-value=4.8  Score=32.53  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  281 (473)
Q Consensus       214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL  281 (473)
                      ++.++..+...+.........+......+..+.++|..++.++.+.+..|......|...+..+...+
T Consensus        19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333333344444444445555555555555566666666666666666666666665544

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.10  E-value=7.1  Score=32.18  Aligned_cols=8  Identities=25%  Similarity=0.696  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 011982           98 ERESHIQK  105 (473)
Q Consensus        98 E~~~l~q~  105 (473)
                      +...+..+
T Consensus        17 e~e~a~d~   24 (101)
T 3u59_A           17 DKENAIDR   24 (101)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.74  E-value=5  Score=31.76  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  230 (473)
Q Consensus       173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~  230 (473)
                      +.++..++.+.|.|..+-..++..+.........+..++..|...+..++.+++....
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee   62 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE   62 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666655555555555544444444444444444444444444433

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=89.45  E-value=1.8  Score=42.67  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=45.4

Q ss_pred             hhhhhhhhhhhhhHHhhhhhhh--hhhcccCCccccccccccccCCccccccccccccccccccCCc--ceeecCCCch-
Q 011982          323 KVNDLSVKLDRQSVAAGLSSAI--GSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGVHADPPP-  397 (473)
Q Consensus       323 k~neL~~~~~~~~~~~Gl~s~~--~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv~d~~a~-  397 (473)
                      +-..|..+..+++..-|-...+  .++.+  +.||.  |+|+++--++.+-.|.+|.=      |..  .|||.|-.++ 
T Consensus        91 ~k~~Le~~ierLs~pgg~~dprL~~LAe~--~GGvl--LseiYDDI~ieDApyfsAly------Gpar~AIVV~Dl~~~~  160 (302)
T 3ibp_A           91 RKNAVDEEIERLSQPGGSEDQRLNALAER--FGGVL--LSEIYDDVSLEDAPYFSALY------GPSRHAIVVPDLSQVT  160 (302)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCHHHHHHHHH--SSSEE--HHHHSTTCCTTTHHHHHHHT------GGGGSEEECSSCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHH--hCCEe--hhhhhcCCChhhHHHHHHHh------cccceeeEeCCHHHHH
Confidence            3444444444544444433322  22222  44553  66777754454455777665      444  4555553332 


Q ss_pred             hhhcccccccCCceeeecCCCCC
Q 011982          398 LVLSSSEAEYSGEIVQIPLDDKE  420 (473)
Q Consensus       398 ~~~~~~~~~~~gritf~PLn~~~  420 (473)
                      .-+..+. +-++.|.||+=|--.
T Consensus       161 ~~L~~l~-dcPeDLyLIegd~da  182 (302)
T 3ibp_A          161 EHLEGLT-DCPEDLYLIEGDPQS  182 (302)
T ss_dssp             HHHTTCC-SSCSSCEEECSCSTT
T ss_pred             HHHhhcc-CCCcceEEeeCChhh
Confidence            3334444 567899999875443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.23  E-value=7.4  Score=41.12  Aligned_cols=10  Identities=20%  Similarity=0.272  Sum_probs=6.3

Q ss_pred             ccCCCCCCCc
Q 011982           59 DADRHQSNGA   68 (473)
Q Consensus        59 ~~~~~~~~~~   68 (473)
                      |..--||+|-
T Consensus        40 DwGvkCPSGC   49 (562)
T 3ghg_A           40 DWNYKCPSGC   49 (562)
T ss_dssp             SBTTEEECHH
T ss_pred             ccCCCCCccc
Confidence            4555677776

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=88.97  E-value=9.9  Score=32.30  Aligned_cols=16  Identities=6%  Similarity=-0.080  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 011982          215 EERLKLLEADKDSWTQ  230 (473)
Q Consensus       215 eeeie~Le~EI~~L~~  230 (473)
                      +.+......-...|..
T Consensus        45 eaQAaTCNqTV~tL~~   60 (121)
T 3mq7_A           45 EAQAATANHTVMALMA   60 (121)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=88.52  E-value=4.1  Score=31.73  Aligned_cols=51  Identities=14%  Similarity=0.214  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          179 LQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT  229 (473)
Q Consensus       179 LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~  229 (473)
                      -+.|-+.|.+..+ .+..........+...+.++..+...+..|+.+|+.++
T Consensus        25 nr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           25 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3678888998887 77777777777777777777777777777777776653

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.52  E-value=7.1  Score=30.86  Aligned_cols=34  Identities=15%  Similarity=0.200  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          256 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  289 (473)
Q Consensus       256 L~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~  289 (473)
                      +..+...|.+....|...++.+...+..+...|.
T Consensus        39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A           39 LEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.98  E-value=5.2  Score=32.19  Aligned_cols=60  Identities=15%  Similarity=0.085  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982          198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE  257 (473)
Q Consensus       198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~  257 (473)
                      ..++.++..+..+...+..++..+...++.++...++--......+.++..++.-++.+.
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~   62 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS   62 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344455555555555555555555555555444333322333333333444444443333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=87.97  E-value=13  Score=33.08  Aligned_cols=63  Identities=11%  Similarity=0.085  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982          128 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  190 (473)
Q Consensus       128 ~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE  190 (473)
                      ..++.++..++..|..+...+......++.++.++..|..++..++.++..++.|.+.++..-
T Consensus        71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333334444445555555555556666666666666665444444

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=87.62  E-value=12  Score=31.68  Aligned_cols=20  Identities=20%  Similarity=0.137  Sum_probs=2.1

Q ss_pred             HhhhhHHHHHHHHHHHHHhh
Q 011982          305 AAGALIDKLITENIELVEKV  324 (473)
Q Consensus       305 ~~~~~~~~l~~Ey~~L~~k~  324 (473)
                      ..+-.+..|..||.-|..||
T Consensus        88 ~V~~eL~rLQ~eNd~L~Gk~  107 (112)
T 1x79_B           88 QVSEELVRLQKDNDSLQGKH  107 (112)
T ss_dssp             HHHTC---------------
T ss_pred             HHHHHHHHHHhhccchhhhh
Confidence            34444455555555555443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=87.56  E-value=9.7  Score=31.46  Aligned_cols=28  Identities=11%  Similarity=0.259  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          201 RDESAALNMKRASLEERLKLLEADKDSW  228 (473)
Q Consensus       201 ~~el~~L~~ei~~Leeeie~Le~EI~~L  228 (473)
                      ...+..|...+..+..++..+...+..+
T Consensus        16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l   43 (112)
T 1l8d_A           16 EEERNEITQRIGELKNKIGDLKTAIEEL   43 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333333444444444444333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=87.02  E-value=11  Score=30.68  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           92 VKHLRNERESHIQKEATLEGTVQQLQNECDL  122 (473)
Q Consensus        92 i~qlE~E~~~l~q~~a~LE~kikeL~eei~~  122 (473)
                      +..|.+.....+.+...||..-+.|..++..
T Consensus        11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~   41 (93)
T 3s4r_A           11 LQELNDRFANLIDKVRFLEQQNKILLAELEQ   41 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555544444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=86.51  E-value=3.5  Score=35.42  Aligned_cols=39  Identities=15%  Similarity=0.274  Sum_probs=18.6

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          235 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN  273 (473)
Q Consensus       235 ~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~  273 (473)
                      ....+..+.+.++.|..++.+-...+.....+...|+..
T Consensus        38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e   76 (120)
T 3i00_A           38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAE   76 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555444444444444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.47  E-value=17  Score=37.53  Aligned_cols=12  Identities=25%  Similarity=0.016  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHH
Q 011982          311 DKLITENIELVE  322 (473)
Q Consensus       311 ~~l~~Ey~~L~~  322 (473)
                      ..+.+.|+++..
T Consensus       466 ~~~~~~~~~~~~  477 (487)
T 3oja_A          466 ASANATLQELVV  477 (487)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhcccHHHHHHH
Confidence            333444444443

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=86.15  E-value=27  Score=36.51  Aligned_cols=56  Identities=5%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT  247 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~  247 (473)
                      .++..|..++..++.+.........-+..|...+.....++.+....|.+....+.
T Consensus        97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e  152 (464)
T 1m1j_B           97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEME  152 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence            45555555555555554444433333334444444444443333333333333333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=86.09  E-value=15  Score=32.43  Aligned_cols=36  Identities=11%  Similarity=0.163  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL  130 (473)
Q Consensus        95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L  130 (473)
                      ++.++.....+++....++..+....+...+....+
T Consensus         8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~l   43 (147)
T 2b9c_A            8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVI   43 (147)
T ss_dssp             ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.08  E-value=11  Score=31.69  Aligned_cols=24  Identities=8%  Similarity=0.091  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          204 SAALNMKRASLEERLKLLEADKDS  227 (473)
Q Consensus       204 l~~L~~ei~~Leeeie~Le~EI~~  227 (473)
                      +.....-+..-..+|..+..+|..
T Consensus        33 L~~AEeaL~~Kq~~idelk~ei~q   56 (110)
T 2v4h_A           33 LQQAEEALVAKQELIDKLKEEAEQ   56 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=85.09  E-value=16  Score=30.80  Aligned_cols=12  Identities=8%  Similarity=0.155  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 011982          174 MNIANLQSEKEF  185 (473)
Q Consensus       174 ~rl~~LK~ERD~  185 (473)
                      .++..+....|.
T Consensus        56 ~~iReLEq~NDD   67 (111)
T 2v66_B           56 KYVRELEQANDD   67 (111)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhchH
Confidence            333333333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.73  E-value=29  Score=35.50  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=14.6

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011982          182 EKEFWLQKEA-ALEQKISQLRDESAALNMKRASL  214 (473)
Q Consensus       182 ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~L  214 (473)
                      .+..||++.+ .+++.+...+.+.......+..|
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (471)
T 3mq9_A          397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMAL  430 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence            3444455554 44444444444444444433333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.31  E-value=1.8  Score=37.95  Aligned_cols=41  Identities=22%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  232 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei  232 (473)
                      .+..++..+...+..-.......+.....++.+++.|+..+
T Consensus        43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL   83 (135)
T 2e7s_A           43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   83 (135)
T ss_dssp             THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666666666677777777777777777743

>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}

Probab=83.58  E-value=0.42  Score=29.05  Aligned_cols=14  Identities=57%  Similarity=0.921  Sum_probs=12.4

Q ss_pred             cchhHHHHHHhhcc
Q 011982          449 APFRLVSFVAKYVS  462 (473)
Q Consensus       449 ~~f~~~~~~~~~~~  462 (473)
                      +.|||+-||-|||-
T Consensus         3 kgfrlvlfvkryvr   16 (26)
T 1z2t_A            3 KGFRLVLFVKRYVR   16 (26)
T ss_dssp             CCTTHHHHHHHHTH
T ss_pred             ccEEEeeeHHHHHH
Confidence            46999999999995

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=83.29  E-value=16  Score=29.34  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL  130 (473)
Q Consensus        90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L  130 (473)
                      .++..++.++..+...+...+...++|......+.+....|
T Consensus        14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L   54 (89)
T 3bas_A           14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL   54 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444433333333

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=83.10  E-value=23  Score=36.49  Aligned_cols=53  Identities=4%  Similarity=0.008  Sum_probs=34.6

Q ss_pred             cCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982           60 ADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNE  119 (473)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~ee  119 (473)
                      +---||+|=.+       ..-+...+..+...+..|+..++.+.+.-..+..-++.++.-
T Consensus        15 ~G~~CPT~C~i-------~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~   67 (409)
T 1m1j_C           15 FGSYCPTTCGI-------ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI   67 (409)
T ss_dssp             GCCEEECTTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCCCcccH-------HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567887532       234566677777888888777777776666666555555554

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=83.07  E-value=28  Score=35.66  Aligned_cols=17  Identities=6%  Similarity=-0.021  Sum_probs=7.1

Q ss_pred             chHHHHHHHHHHHHHHH
Q 011982          171 GLEMNIANLQSEKEFWL  187 (473)
Q Consensus       171 ~le~rl~~LK~ERD~wL  187 (473)
                      +.++.+..+..+.+..|
T Consensus       370 t~eeal~~~~~~i~~~l  386 (471)
T 3mq9_A          370 TVDEALKDAQTRITAAR  386 (471)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            34444444444443333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=82.52  E-value=13  Score=31.85  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  230 (473)
Q Consensus       192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~  230 (473)
                      .+...|..+..+++.-.........+.+.|..+++.+..
T Consensus        44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~   82 (120)
T 3i00_A           44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555533

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=80.89  E-value=18  Score=28.72  Aligned_cols=55  Identities=27%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          100 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET  154 (473)
Q Consensus       100 ~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e  154 (473)
                      ..+.+.+..|..++.++.++...+..++.+-..++..|+..+......+..+..+
T Consensus        22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~   76 (81)
T 3qh9_A           22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3688888888888888888888888888888877777777766665554444433

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=80.22  E-value=25  Score=29.39  Aligned_cols=96  Identities=17%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          186 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ  265 (473)
Q Consensus       186 wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr  265 (473)
                      +|++-.++.+.+...+.....+...+..|+.++..+..+...   ....-...|..+..++..-...+..++..+..+..
T Consensus         6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~---k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~   82 (107)
T 2no2_A            6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQR---KTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555566666665555555555555555555555411111   00011233333334444444444445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011982          266 ENRQLKENVSSLRSQLSSD  284 (473)
Q Consensus       266 Ee~kL~~~i~~L~~eL~~a  284 (473)
                      +...|...+..+..+...+
T Consensus        83 ~~~~l~~~~~~l~~Ek~~L  101 (107)
T 2no2_A           83 SEANWAAEFAELEKERDSL  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555554443

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=80.06  E-value=21  Score=28.38  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          156 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES  204 (473)
Q Consensus       156 eeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el  204 (473)
                      ..++..+..+...+..++..+...-.++..+++-...|+.+|...+.-+
T Consensus        29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL   77 (84)
T 1gk4_A           29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3334444444444444444444445566666666666666666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1gxja_	161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	98.84
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	92.28

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=7.1e-11  Score=105.71  Aligned_cols=67  Identities=10%  Similarity=0.023  Sum_probs=61.0

Q ss_pred             CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchh
Q 011982          351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDL  424 (473)
Q Consensus       351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~  424 (473)
                      .++||||+|+|++.   | +++|++|++   +..|+.  +||| +.++|..+++++...+.||+||||||.+.....
T Consensus        15 ~~~gv~G~v~dli~---v-~~~y~~Ave---~aLG~~l~~vVV~~~~~A~~~i~~lk~~~~Gr~tfipl~~i~~~~~   84 (161)
T d1gxja_          15 RFPGLVDVVSNLIE---V-DEKYSLAVS---VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFN   84 (161)
T ss_dssp             GCTTEEEEHHHHCB---C-CGGGHHHHH---HHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCCC
T ss_pred             cCCCceEEHHHhCc---c-CHHHHHHHH---HHhhhhhceEEECCHHHHHHHHHHHhhccCceEEEEeccccccccc
Confidence            46899999999999   8 999999999   888888  8888 889999999999988999999999999987654

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.28  E-value=2.2  Score=34.11  Aligned_cols=52  Identities=6%  Similarity=0.077  Sum_probs=23.5

Q ss_pred             HHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982          229 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  280 (473)
Q Consensus       229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~e  280 (473)
                      ......+...+..+...+..+..++..+......+.+....+...+..+..+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e  180 (185)
T d2ap3a1         129 VNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKE  180 (185)
T ss_dssp             HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444455555555555544444444444444333