Citrus Sinensis ID: 011995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPLPSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTVRRASVEGF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHccccEEEHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccEEEEEEcccccccccEEEEEEccccccccHHHHHHHHHHHHccccccccccccEEEccccccEEEEEEEcccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEcccccccEEccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHHHHccccHHHccccccccEEEEEEcccccEEEHHHHHHEEEcccccccHHHHHHHHHHHHHHHcccHHEEEEEEEccccccEEEEEEEcccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHEEEcccccccHcHccccEEccccccEEEEEcEccccHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHHccHHHcccccHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mgcftvlkskkkkpeqtvhlkrvnpqehtpttlpepqiptrslqsappsfrtrvkpiplnnttkatnnrtralsapsslDAAEAEQDALASVEfeeqeesksragltkeqrssspqplplpsphtqsaaslkatgsfksgtasgplfasgplplpptgtgtlrnfpldEVAAACHNFFSDRCISEGLSSVMYrasfgddastskkFEATvtrlnpssqgvKEFINDVNTlaslqhpnlckllgfhardgsdqRMLIYERLFHGSldrliygrsdgppidwntRVKIALCAAQGltflheegpfqaMYNEFSTANIQIDKDFsaklsgygcaghipetdisnssvAAANLSVETLErglltpksnvWSFGIVLLELLTgrknldsrhpkeernlvkwsrpfladdcrlslimdpqlkgrfplkaARTVADIALRClqkepserptmRSIFEELdrqesrksssstvrrasvegf
Flexible Loop (DISEMBL)
mgcftvlkskkkkpeqtvhlkrvnpqehtpttlpepqiptrslqsappsfrtrvkpiplnnttkatnnrtRALSAPSSLDAAEAEQDALASVEfeeqeesksragltkeqrssspqplplpSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATvtrlnpssqgvKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERglltpksnvWSFGIVLLELLTgrknldsrhpkeernlvkwsrpflaDDCRLSLIMDPQLKGRFPLKAARTVADIAlrclqkepserptmrsifeeldrqesrksssstvrrasvegf
Low Complexity Region (SEG)
MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLnnttkatnnrtraLSAPSsldaaeaeqdalasVEFEEQEESKSRAGLTKEQRssspqplplpsphtqsAASLKATGSFKSGTASGPLFASgplplpptgtgtlRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIsnssvaaanlsvETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTVRRASVEGF
Disordered region (IsUnstruct)
***************************************************************************************************************************************************************GTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASF***********************VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRK***********NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL**************************************
Disordered Region (DISOPRED)
*GCF*************************************************************************SLDAAEAEQDAL*************************************************************************RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVT******QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNL******E**NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD********************
Disordered Region (DISEMBL)
MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNR*************************************************************LKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE**********************
Disordered Region (DISPRO)
*GC*TVLK***************************************************************ALSAPSSLDAAEAEQDALASVEFEEQ***************************************************************TLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPLPSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTVRRASVEGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q9LFP7	493	Probable receptor-like pr	no	no	0.606	0.582	0.39	8e-56
Q9SRH7	490	Receptor-like serine/thre	no	no	0.606	0.585	0.383	2e-53
P43293	389	Probable serine/threonine	no	no	0.627	0.763	0.375	6e-53
Q8H186	389	Probable receptor-like pr	no	no	0.610	0.742	0.376	6e-52
O49839	426	Protein kinase 2A, chloro	no	no	0.642	0.713	0.369	7e-51
O49840	426	Protein kinase 2B, chloro	no	no	0.638	0.708	0.365	2e-50
Q8GXZ3	410	Serine/threonine-protein	no	no	0.600	0.692	0.385	4e-50
Q9FM85	408	Probable receptor-like pr	no	no	0.602	0.698	0.372	1e-47
Q9FE20	456	Serine/threonine-protein	no	no	0.615	0.638	0.381	2e-47
Q9SFT7	414	Serine/threonine-protein	no	no	0.598	0.683	0.385	4e-47

>sp|Q9LFP7|Y5158_ARATH Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1

 Score =  218 bits (555), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 179/300 (59%), Gaps = 13/300 (4%)

Query: 162 LRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS 217
           LR F  +++  +  NF  +  + EG    +++    ++ +   K        V  LNP  
Sbjct: 127 LRKFTFNDLKLSTRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNPDG 186

Query: 218 -QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP 276
            QG KE++ ++N L +L HPNL KL+G+   D  DQR+L+YE +  GSL+  ++ RS   
Sbjct: 187 LQGHKEWLAEINFLGNLLHPNLVKLVGYCIED--DQRLLVYEFMPRGSLENHLFRRS--L 242

Query: 277 PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE 336
           P+ W+ R+KIAL AA+GL+FLHEE     +Y +F T+NI +D D++AKLS +G A   P+
Sbjct: 243 PLPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPD 302

Query: 337 ---TDISNSSVAAANLSV-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN 392
              T +S   +     +  E +  G LT KS+V+SFG+VLLE+LTGR+++D   P  E N
Sbjct: 303 EGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHN 362

Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           LV+W+RP L D  R   ++DP+L+G F +K A+ V  +A +CL ++P  RP M  + E L
Sbjct: 363 LVEWARPHLLDKRRFYRLLDPRLEGHFSIKGAQKVTQLAAQCLSRDPKIRPKMSDVVEAL 422

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SRH7|Y3130_ARATH Receptor-like serine/threonine-protein kinase At3g01300 OS=Arabidopsis thaliana GN=At3g01300 PE=2 SV=1

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 177/300 (59%), Gaps = 13/300 (4%)

Query: 162 LRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS 217
           L+ F   ++  A  NF  +  + EG    +++    ++ +   K        V  LNP  
Sbjct: 121 LKKFSFIDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNPDG 180

Query: 218 -QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP 276
            QG KE++ ++N L +L HPNL KL+G+   D  DQR+L+YE +  GSL+  ++ RS   
Sbjct: 181 LQGHKEWLAEINYLGNLLHPNLVKLVGYCIED--DQRLLVYEFMPRGSLENHLFRRS--L 236

Query: 277 PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE 336
           P+ W+ R+KIAL AA+GL+FLHEE     +Y +F T+NI +D +++AKLS +G A   P+
Sbjct: 237 PLPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLDGEYNAKLSDFGLAKDAPD 296

Query: 337 ---TDISNSSVAAANLSV-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN 392
              T +S   +     +  E +  G LT KS+V+SFG+VLLE+LTGR+++D   P  E N
Sbjct: 297 EGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHN 356

Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           LV+W+RP L D  R   ++DP+L+G F +K A+ V  +A +CL ++   RP M  + E L
Sbjct: 357 LVEWARPHLLDKRRFYRLLDPRLEGHFSVKGAQKVTQLAAQCLSRDSKIRPKMSEVVEVL 416

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P43293|NAK_ARATH Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2

 Score =  208 bits (530), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 180/314 (57%), Gaps = 17/314 (5%)

Query: 161 TLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPS 216
            L+NF L E+ +A  NF  D  + EG    +++    + +    K        V RLN  
Sbjct: 52  NLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQE 111

Query: 217 S-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD- 274
             QG +E++ ++N L  L HPNL KL+G+   +  + R+L+YE +  GSL+  ++ R   
Sbjct: 112 GFQGHREWLAEINYLGQLDHPNLVKLIGYCLEE--EHRLLVYEFMTRGSLENHLFRRGTF 169

Query: 275 GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI 334
             P+ WNTRV++AL AA+GL FLH   P Q +Y +F  +NI +D +++AKLS +G A   
Sbjct: 170 YQPLSWNTRVRMALGAARGLAFLHNAQP-QVIYRDFKASNILLDSNYNAKLSDFGLARDG 228

Query: 335 PETDISNSSVAAANLSV------ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
           P  D  NS V+   +        E L  G L+ KS+V+SFG+VLLELL+GR+ +D   P 
Sbjct: 229 PMGD--NSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPV 286

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
            E NLV W+RP+L +  RL  +MDP+L+G++ L  A  +A +AL C+  +   RPTM  I
Sbjct: 287 GEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEI 346

Query: 449 FEELDRQESRKSSS 462
            + ++    +K +S
Sbjct: 347 VKTMEELHIQKEAS 360

May play a role in the regulation of plant growth and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8H186|Y3545_ARATH Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1

 Score =  205 bits (521), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 175/303 (57%), Gaps = 14/303 (4%)

Query: 161 TLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDAST----SKKFEATVTRLNPS 216
           T+++F  +E+  A  NF SD  + EG    ++R    +   T    S      V RLNP 
Sbjct: 45  TVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPD 104

Query: 217 S-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY--GRS 273
             QG +E++ ++N L  L HPNL KL+G+   D  +QR+L+YE +  GSL+  ++  G  
Sbjct: 105 GFQGHREWLTEINYLGQLSHPNLVKLIGYCLED--EQRLLVYEFMHKGSLENHLFANGNK 162

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH 333
           D  P+ W  R+K+AL AA+GL FLH + P + +Y +   +NI +D DF+AKLS +G A  
Sbjct: 163 DFKPLSWILRIKVALDAAKGLAFLHSD-PVKVIYRDIKASNILLDSDFNAKLSDFGLARD 221

Query: 334 IP---ETDISNSSVAAANLSV-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE 389
            P   ++ +S   +     +  E +  G L  +S+V+SFG+VLLELL GR+ LD   P +
Sbjct: 222 GPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAK 281

Query: 390 ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
           E+NLV W+RP+L    ++ LI+D +L  ++  + A  +A IA++CL  EP  RPTM  + 
Sbjct: 282 EQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVV 341

Query: 450 EEL 452
             L
Sbjct: 342 RAL 344

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49839|APK2A_ARATH Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=2 SV=1

 Score =  201 bits (512), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 18/322 (5%)

Query: 150 GPLPLPPT-----GTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSK 204
           GPLP   T      +  L+ F  +E+  A  NF  D  + EG    +++      + T+ 
Sbjct: 54  GPLPTLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTAS 113

Query: 205 K----FEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER 259
           +        V +L P   QG KE++ +VN L  L HPNL  L+G+ A    + R+L+YE 
Sbjct: 114 RPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAE--GENRLLVYEF 171

Query: 260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK 319
           +  GSL+  ++ R    P+ W  R+K+A+ AA+GLTFLHE    Q +Y +F  ANI +D 
Sbjct: 172 MPKGSLENHLF-RRGAQPLTWAIRMKVAVGAAKGLTFLHEAKS-QVIYRDFKAANILLDA 229

Query: 320 DFSAKLSGYGCAGHIPETD---ISNSSVAAANLSV-ETLERGLLTPKSNVWSFGIVLLEL 375
           DF+AKLS +G A   P  D   +S   +     +  E +  G LT KS+V+SFG+VLLEL
Sbjct: 230 DFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLEL 289

Query: 376 LTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
           ++GR+ +D+ +   E +LV W+ P+L D  +L  IMD +L G++P K A T A++AL+CL
Sbjct: 290 ISGRRAMDNSNGGNEYSLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCL 349

Query: 436 QKEPSERPTMRSIFEELDRQES 457
             +   RP M  +   L++ ES
Sbjct: 350 NPDAKLRPKMSEVLVTLEQLES 371

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49840|APK2B_ARATH Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 13/315 (4%)

Query: 162 LRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS 217
           L+ F  +E+  A  NF  D  + EG    +++        T+ K        V +L    
Sbjct: 68  LKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEG 127

Query: 218 -QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP 276
            QG KE++ +VN L  L HPNL KL+G+      + R+L+YE +  GSL+  ++ R    
Sbjct: 128 YQGHKEWLTEVNYLGQLSHPNLVKLVGYCVE--GENRLLVYEFMPKGSLENHLF-RRGAQ 184

Query: 277 PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE 336
           P+ W  R+K+A+ AA+GLTFLH+    Q +Y +F  ANI +D +F++KLS +G A   P 
Sbjct: 185 PLTWAIRMKVAIGAAKGLTFLHD-AKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPT 243

Query: 337 TDISNSSVAAANL----SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN 392
            D ++ S          + E +  G LT KS+V+SFG+VLLELL+GR+ +D      E++
Sbjct: 244 GDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQS 303

Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           LV W+ P+L D  +L  IMD +L G++P K A T A +AL+CL  +   RP M  +  +L
Sbjct: 304 LVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKL 363

Query: 453 DRQESRKSSSSTVRR 467
           D+ ES K  +    R
Sbjct: 364 DQLESTKPGTGVGNR 378

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GXZ3|Y5102_ARATH Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1

 Score =  199 bits (506), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 171/296 (57%), Gaps = 12/296 (4%)

Query: 165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTS-KKFEATVTRLNPSS-QGVKE 222
           F L E+     +F  D  + EG    +Y+    D+     K     V  LN    QG +E
Sbjct: 57  FTLFELETITKSFRPDYILGEGGFGTVYKGYIDDNLRVGLKSLPVAVKVLNKEGLQGHRE 116

Query: 223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNT 282
           ++ +VN L  L+HPNL KL+G+   D  D R+L+YE +  GSL+  ++ R    P+ W+ 
Sbjct: 117 WLTEVNFLGQLRHPNLVKLIGYCCED--DHRLLVYEFMLRGSLENHLF-RKTTAPLSWSR 173

Query: 283 RVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP---ETD 338
           R+ IAL AA+GL FLH  E P   +Y +F T+NI +D D++AKLS +G A   P   ET 
Sbjct: 174 RMMIALGAAKGLAFLHNAERP--VIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETH 231

Query: 339 ISNSSVAAANLSV-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
           +S   +     +  E +  G LT +S+V+SFG+VLLE+LTGRK++D   P +E+NLV W+
Sbjct: 232 VSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLEMLTGRKSVDKTRPSKEQNLVDWA 291

Query: 398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
           RP L D  +L  I+DP+L+ ++ ++AA+    +A  CL + P  RP M  + E L+
Sbjct: 292 RPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLE 347

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FM85|Y5564_ARATH Probable receptor-like protein kinase At5g56460 OS=Arabidopsis thaliana GN=At5g56460 PE=1 SV=1

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 165/298 (55%), Gaps = 13/298 (4%)

Query: 165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFE-----ATVTRLNPSSQG 219
           F  +E+     NF  DR +  G    +Y+    +D    +  E       V   + S QG
Sbjct: 64  FTYEELKNITSNFRQDRVLGGGGFGSVYKGFIKEDLGDQEVPEPLPVAVKVHDGDNSFQG 123

Query: 220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
            +E++ +V  L  L HPNL KL+G+   D  + R+LIYE +  GS++  ++ R    P+ 
Sbjct: 124 HREWLAEVIFLGQLSHPNLVKLIGYCCED--NHRVLIYEYMARGSVENNLFSRV-LLPLS 180

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
           W  R+KIA  AA+GL FLHE      +Y +F T+NI +D D++AKLS +G A   P  D 
Sbjct: 181 WAIRMKIAFGAAKGLAFLHEAKK-PVIYRDFKTSNILLDMDYNAKLSDFGLAKDGPVGDK 239

Query: 340 SNSSV----AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
           S+ S          + E +  G LTP S+V+SFG+VLLELLTGRK+LD   P  E+NL+ 
Sbjct: 240 SHVSTRIMGTYGYAAPEYIMTGHLTPGSDVYSFGVVLLELLTGRKSLDKSRPTREQNLID 299

Query: 396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
           W+ P L +  ++  I+DP++   +P+KA +  A +A  CL + P  RP MR I + L+
Sbjct: 300 WALPLLKEKKKVLNIVDPKMNCEYPVKAVQKAAMLAYHCLNRNPKARPLMRDIVDSLE 357

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 171/312 (54%), Gaps = 21/312 (6%)

Query: 152 LPLPPTGTGTL--RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEAT 209
           L LP  G G +    F   E+AAA  NF  D  + EG    +Y+                
Sbjct: 59  LLLPRDGLGQIAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQV-----VA 113

Query: 210 VTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRL 268
           V +L+ +  QG +EF+ +V  L+ L HPNL  L+G+ A DG DQR+L+YE +  GSL+  
Sbjct: 114 VKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCA-DG-DQRLLVYEFMPLGSLEDH 171

Query: 269 IYGRSDGPP----IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
           ++   D PP    +DWN R+KIA  AA+GL FLH++     +Y +F ++NI +D+ F  K
Sbjct: 172 LH---DLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPK 228

Query: 325 LSGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVWSFGIVLLELLTGRK 380
           LS +G A   P  D S+ S          + E    G LT KS+V+SFG+V LEL+TGRK
Sbjct: 229 LSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRK 288

Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
            +DS  P  E+NLV W+RP   D  +   + DP+LKGRFP +A      +A  C+Q++ +
Sbjct: 289 AIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAA 348

Query: 441 ERPTMRSIFEEL 452
            RP +  +   L
Sbjct: 349 TRPLIADVVTAL 360

Protein kinase required for plant defense mechanism mediated by the disease resistance (R) protein RPS5. In case of infection by Pseudomonas syringae, RPS5 specifically recognizes the avrPphB type III effector avirulence protein and triggers a defense reaction. AvrPphB may trigger RPS5-mediated defense mechanism via the cleavage of PBS1. Both kinase activity and cleavage by avrPphB are independently required to trigger the RPS5-mediated resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SFT7|Y3707_ARATH Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 166/296 (56%), Gaps = 13/296 (4%)

Query: 163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-QGVK 221
           + F   E+A A  NF  +  I EG    +Y+                V +L+ +  QG K
Sbjct: 65  QTFSFRELATATKNFRQECLIGEGGFGRVYKGKL-----EKTGMIVAVKQLDRNGLQGNK 119

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDW 280
           EFI +V  L+ L H +L  L+G+ A DG DQR+L+YE +  GSL D L+    D  P+DW
Sbjct: 120 EFIVEVLMLSLLHHKHLVNLIGYCA-DG-DQRLLVYEYMSRGSLEDHLLDLTPDQIPLDW 177

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-- 338
           +TR++IAL AA GL +LH++     +Y +   ANI +D +F+AKLS +G A   P  D  
Sbjct: 178 DTRIRIALGAAMGLEYLHDKANPPVIYRDLKAANILLDGEFNAKLSDFGLAKLGPVGDKQ 237

Query: 339 -ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
            +S+  +          +R G LT KS+V+SFG+VLLEL+TGR+ +D+  PK+E+NLV W
Sbjct: 238 HVSSRVMGTYGYCAPEYQRTGQLTTKSDVYSFGVVLLELITGRRVIDTTRPKDEQNLVTW 297

Query: 397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           ++P   +  R   + DP L+G FP KA      +A  CLQ+E + RP M  +   L
Sbjct: 298 AQPVFKEPSRFPELADPSLEGVFPEKALNQAVAVAAMCLQEEATVRPLMSDVVTAL 353

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
255575572	543	protein kinase atsik, putative [Ricinus	0.951	0.828	0.780	0.0
356568230	548	PREDICTED: probable receptor-like protei	0.936	0.808	0.796	0.0
357469007	542	Protein kinase 2A [Medicago truncatula]	0.959	0.837	0.75	0.0
356532163	549	PREDICTED: probable receptor-like protei	0.955	0.823	0.771	0.0
388500644	522	unknown [Medicago truncatula]	0.959	0.869	0.747	0.0
357506663	546	Protein kinase 2A [Medicago truncatula]	0.957	0.829	0.774	0.0
225439687	548	PREDICTED: probable receptor-like protei	0.957	0.826	0.774	0.0
297735543	660	unnamed protein product [Vitis vinifera]	0.957	0.686	0.770	0.0
449502644	548	PREDICTED: probable receptor-like protei	0.957	0.826	0.737	0.0
449439805	550	PREDICTED: probable receptor-like protei	0.957	0.823	0.726	0.0

>gi|255575572|ref|XP_002528686.1| protein kinase atsik, putative [Ricinus communis] gi|223531858|gb|EEF33675.1| protein kinase atsik, putative [Ricinus communis]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/464 (78%), Positives = 401/464 (86%), Gaps = 14/464 (3%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLN 60
           MGCFTVLKSKKKKPE +V +KRV+P+E TPTTLPEPQIPTRSLQSAPPSFRTRVKP+  +
Sbjct: 1   MGCFTVLKSKKKKPEPSVSIKRVSPKEQTPTTLPEPQIPTRSLQSAPPSFRTRVKPVQPD 60

Query: 61  NTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPL 120
           N  +  NNR R  SAP SLD+AE  QD LA++E++E EE KSR  L ++  S  PQPLPL
Sbjct: 61  N--RLINNRARVKSAPESLDSAE--QDDLAAIEYDEHEELKSRVSLARDHLS--PQPLPL 114

Query: 121 PSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPP--TGTGTLRNFPLDEVAAACHNFF 178
           P      AA+LK  GS K    SGPL+ASGPLPLPP  T +GTLRNF  DE+ +AC NF 
Sbjct: 115 P------AAALKPAGSLKFTNGSGPLYASGPLPLPPGVTQSGTLRNFSYDEIISACRNFS 168

Query: 179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           SDRC+SEGLSS++YRASFGDD S+SKKFEATVTRL+ S QG KEFIN+VNTLASL+HPNL
Sbjct: 169 SDRCVSEGLSSIIYRASFGDDTSSSKKFEATVTRLHSSPQGFKEFINEVNTLASLRHPNL 228

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
           CKLLG+HARDGS+QRMLIYERL+HGSLDRL+YGR DGPPIDWNTR+KIALCAAQGLTFLH
Sbjct: 229 CKLLGYHARDGSEQRMLIYERLYHGSLDRLLYGRLDGPPIDWNTRMKIALCAAQGLTFLH 288

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
           EEGPFQAMYNEFST NIQIDKDFSAKLSGYGC GHIPET+ISNSSVA ANLSVETLERGL
Sbjct: 289 EEGPFQAMYNEFSTGNIQIDKDFSAKLSGYGCVGHIPETEISNSSVAVANLSVETLERGL 348

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
           LTPKSNVWSFGIVLLELLTGRKNLD+RHPKEERNLV+WSRPFL DDCRLSLIMDPQLKGR
Sbjct: 349 LTPKSNVWSFGIVLLELLTGRKNLDNRHPKEERNLVRWSRPFLDDDCRLSLIMDPQLKGR 408

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS 462
           FPLKAARTVADIALRCL+K+P ERPTMR+I E L   +  KSS+
Sbjct: 409 FPLKAARTVADIALRCLKKDPLERPTMRAIVENLRVIQDMKSST 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568230|ref|XP_003552316.1| PREDICTED: probable receptor-like protein kinase At5g15080-like [Glycine max]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/453 (79%), Positives = 401/453 (88%), Gaps = 10/453 (2%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPI-PL 59
           MGCFTVLKSKKKK +   ++K V+  E+ PT LPEPQ  TRSLQSAPPSFRTRVKPI P+
Sbjct: 1   MGCFTVLKSKKKKSDPITYIKHVSHNENVPTVLPEPQTRTRSLQSAPPSFRTRVKPIQPI 60

Query: 60  NNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLP 119
           N   KA+NNRTR LSAPS+LDAAE  QDALAS+E+EEQEES+ RAG  KEQRSSSPQPLP
Sbjct: 61  N---KASNNRTRTLSAPSTLDAAE--QDALASIEYEEQEESRHRAGSMKEQRSSSPQPLP 115

Query: 120 LPSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFS 179
           LPSP   SA  LKA GSFKS  +S PL ASGPLPLPPTG+  LRNF  +E+AAACH+F S
Sbjct: 116 LPSPQGGSA--LKAIGSFKSVASSSPLHASGPLPLPPTGS--LRNFLYEEIAAACHHFSS 171

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
           DRC+SE LSS +Y+ASFGDD S+SKKFEATVTRL+PSSQG+KEFIN+VNTLASLQHPNLC
Sbjct: 172 DRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNLC 231

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           KLLGFHAR+GS+ RML+YERL+HGSLDRL+YGRSDGP IDWNTR+KIA+CAAQGLTFLHE
Sbjct: 232 KLLGFHAREGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAAQGLTFLHE 291

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLL 359
           EGPFQAMYNEFSTANIQIDKDFSAKLSGYGC GHIPE +IS+SS A  NLS+ETLE+G+L
Sbjct: 292 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGML 351

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
           TPKSNVWSFGI LLELLTGRKNLDSRHPKEERNLVKWSRPFLAD+ RLSLIMDPQLKGRF
Sbjct: 352 TPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRF 411

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           P KAART+ADIA RCLQKEPS+RPTMR++ E L
Sbjct: 412 PSKAARTIADIAQRCLQKEPSDRPTMRTVVEHL 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469007|ref|XP_003604788.1| Protein kinase 2A [Medicago truncatula] gi|355505843|gb|AES86985.1| Protein kinase 2A [Medicago truncatula]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/464 (75%), Positives = 395/464 (85%), Gaps = 10/464 (2%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLN 60
           MGCFT+LK KKKKP+Q V++KRV+P E +PT LPEPQ  TRSLQSAPPSF+ RVKPI  +
Sbjct: 1   MGCFTILKRKKKKPDQIVYVKRVSPGEDSPTVLPEPQTHTRSLQSAPPSFKIRVKPIQPS 60

Query: 61  NTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPL 120
           N  KATNNR RALSAPSSLD  +AEQDALA++E+EEQE SK R G  KEQRS SPQPLP 
Sbjct: 61  N--KATNNRIRALSAPSSLD--DAEQDALATIEYEEQEGSKYRTGSWKEQRSPSPQPLP- 115

Query: 121 PSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSD 180
             P  +   +LK  GSFK G AS PL+ASGPLPLPP+G+  LRNF  DE+AAAC NF SD
Sbjct: 116 -LPSPKGGGTLKTVGSFKLGIASSPLYASGPLPLPPSGS--LRNFSYDELAAACLNFSSD 172

Query: 181 RCISEGLSSVMYRASFGDDASTS--KKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           R +SE LSS MY+ASFGDD STS  KKFEATVTRL PSSQG+KEFIN+VNTLASLQHPNL
Sbjct: 173 RYMSESLSSTMYKASFGDDTSTSSSKKFEATVTRLRPSSQGLKEFINEVNTLASLQHPNL 232

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
           C+LLGFHA DGS+ RML+YERL+HGSLDRL+YGRSDGP IDWNTR+KIA+CAA GL+FLH
Sbjct: 233 CRLLGFHAGDGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAALGLSFLH 292

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
           EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC GH+P+ +IS+SS A  NLS+ETLE+G+
Sbjct: 293 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHVPKEEISSSSSAVGNLSMETLEKGM 352

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
           LTPKSNVWSFGI LLELLTGRKNLDSRHPKEERNLVKWSRPFL+D+ RLS+IMDPQLKGR
Sbjct: 353 LTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLSDNHRLSMIMDPQLKGR 412

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS 462
           FP KAA T+A+IA RCLQ EPSERPTM ++ E+L + +  K SS
Sbjct: 413 FPSKAASTIANIAQRCLQMEPSERPTMGTVVEQLKKIQDLKHSS 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532163|ref|XP_003534643.1| PREDICTED: probable receptor-like protein kinase At5g15080-like [Glycine max]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/463 (77%), Positives = 401/463 (86%), Gaps = 11/463 (2%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPI-PL 59
           MGCFTVLKSKKK+ +   ++KRV+  E+ PT LPEPQ  TRSLQSAPPSFRTRVKPI P+
Sbjct: 1   MGCFTVLKSKKKRSDPITYVKRVSHNENVPTVLPEPQTHTRSLQSAPPSFRTRVKPIQPI 60

Query: 60  NNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLP 119
           N   K +NNR R LSAPS+LDAAE  QDALAS+E+EEQEES+ RAG  KE RSSSPQPLP
Sbjct: 61  N---KVSNNRARTLSAPSTLDAAE--QDALASIEYEEQEESRHRAGSMKEHRSSSPQPLP 115

Query: 120 LPSPHTQSAASLKATGSFKSGTASGP-LFASGPLPLPPTGTGTLRNFPLDEVAAACHNFF 178
           LPS   Q   +LKA GSFKS T+ G   +ASGPLPLPPTG+  LRNF  +E+AAACH+F 
Sbjct: 116 LPS--PQGGCALKAIGSFKSVTSGGSSYYASGPLPLPPTGS--LRNFLYEEIAAACHHFS 171

Query: 179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           SDRC+SE LSS +Y+ASFGDD S+SKKFEATVTRL+PSSQG+KEFIN+VNTLASLQHPNL
Sbjct: 172 SDRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNL 231

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
           CKLLGFHAR+GS+ RML+YERL+HGSLDRL+YGRSDGP IDWNTR+KIA+CAAQGLTFLH
Sbjct: 232 CKLLGFHAREGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAAQGLTFLH 291

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
           EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC GHIPE +IS+SS A  NLS+ETLE+G+
Sbjct: 292 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGM 351

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
           LTPKSNVWSFGI LLELLTGRKNLDSRHPKEERNLVKWSRPFLAD+ RLSLIMDPQLKGR
Sbjct: 352 LTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGR 411

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS 461
           FP KAART+ADIA RCLQKEPS+RPTMR++ E L   +  K S
Sbjct: 412 FPSKAARTIADIAQRCLQKEPSDRPTMRTVVEHLKMIQDLKYS 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500644|gb|AFK38388.1| unknown [Medicago truncatula]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/464 (74%), Positives = 393/464 (84%), Gaps = 10/464 (2%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLN 60
           MGCFT+LK KKKKP+  V++KRV+P E +PT LPEPQ  TRSLQSAPPSF+ RVKPI  +
Sbjct: 1   MGCFTILKRKKKKPDPIVYVKRVSPGEDSPTVLPEPQTHTRSLQSAPPSFKIRVKPIQPS 60

Query: 61  NTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPL 120
           N  KATNNR RALSAPSSLD  +AEQDALA++E+EEQE SK R G  KEQRS SPQPLP 
Sbjct: 61  N--KATNNRIRALSAPSSLD--DAEQDALATIEYEEQEGSKYRTGSWKEQRSPSPQPLP- 115

Query: 121 PSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSD 180
             P  +   +LK  GSFK G AS PL+ASGPLPLPPTG+  LRNF  DE+AAAC NF SD
Sbjct: 116 -LPSPKGGGTLKTVGSFKLGIASSPLYASGPLPLPPTGS--LRNFSYDELAAACLNFSSD 172

Query: 181 RCISEGLSSVMYRASFGDDASTS--KKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           R +SE LSS MY+ASFGDD STS  KKFEATVTR  PSSQG+KEFIN+VNTLASLQHPNL
Sbjct: 173 RYMSESLSSTMYKASFGDDTSTSSSKKFEATVTRRRPSSQGLKEFINEVNTLASLQHPNL 232

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
           C+LLGFHA DGS+ RML+YERL+HGSLDRL+YGRSDGP IDWNTR+KIA+CAA GL+FLH
Sbjct: 233 CRLLGFHAGDGSEHRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAICAALGLSFLH 292

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
           EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC GH+P+ +IS+SS A  NLS+ETLE+G+
Sbjct: 293 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHVPKEEISSSSSAVGNLSMETLEKGM 352

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
           LTPKSNVWSFGI LLELLTGRKNLDSRHPKEERNLVKWSRPFL+D+ RLS+IMDPQLKGR
Sbjct: 353 LTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLSDNHRLSMIMDPQLKGR 412

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS 462
           FP KAA T+A+IA RCLQ EPSERPTM ++ E+L + +  K SS
Sbjct: 413 FPSKAASTIANIAQRCLQMEPSERPTMGTVVEQLKKIQDLKHSS 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506663|ref|XP_003623620.1| Protein kinase 2A [Medicago truncatula] gi|355498635|gb|AES79838.1| Protein kinase 2A [Medicago truncatula]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/462 (77%), Positives = 400/462 (86%), Gaps = 9/462 (1%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLN 60
           MGCFTVLKSKKKK +   ++KR++  EH P+ LPEPQ  TRSLQSAPPSFRTRVKPI   
Sbjct: 1   MGCFTVLKSKKKKSDSFAYVKRISHNEHAPSVLPEPQTHTRSLQSAPPSFRTRVKPI--Q 58

Query: 61  NTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLT-KEQRSSSPQPLP 119
           +  KATNNR RALSAPS+LD A+  QDALAS+E+EEQEE K R G + KE RSSSPQPLP
Sbjct: 59  SVNKATNNRIRALSAPSTLDVAD--QDALASIEYEEQEELKHRGGGSMKEPRSSSPQPLP 116

Query: 120 LPSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFS 179
           LPS   Q  +SLKA GSFK GTASGPL ASGPLPLPPTG+  LRNFP +EVAAACHNF S
Sbjct: 117 LPS--PQGGSSLKAIGSFKLGTASGPLHASGPLPLPPTGS--LRNFPYEEVAAACHNFSS 172

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
           DRC+SE LSS +Y+A FGDD S SKKFEATVTRL+PSSQG+KEFIN+VNTLA+LQHPNLC
Sbjct: 173 DRCMSECLSSTIYKAYFGDDPSNSKKFEATVTRLHPSSQGLKEFINEVNTLATLQHPNLC 232

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           KLLGFHARDGS+ +ML+YERL+HGSLDRL+YGRSDGP IDWNTR+KIA+CAA GLTFLHE
Sbjct: 233 KLLGFHARDGSEHKMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAMCAAHGLTFLHE 292

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLL 359
           EGPFQAMYNEFSTANIQIDKDFSAKLSGYGC GHIPE +IS+SS A  NLS+ETLE+G+L
Sbjct: 293 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGML 352

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
           TPKSNVWSFGI LLELLTGRKNLDSRHPKEERNLVKWS+PFLAD+ RLSLIMDPQLKGR+
Sbjct: 353 TPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSKPFLADNYRLSLIMDPQLKGRY 412

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS 461
           P KAART+ADIA RCLQKEPS+RPTMR++ E L   +  K S
Sbjct: 413 PSKAARTIADIAQRCLQKEPSDRPTMRTVVEHLKTIQDLKYS 454

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439687|ref|XP_002271567.1| PREDICTED: probable receptor-like protein kinase At5g15080 [Vitis vinifera]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/461 (77%), Positives = 396/461 (85%), Gaps = 8/461 (1%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLN 60
           MGCF VLKSKKKK E+T ++KR+NPQE TPTTLPEP++ +R+LQSAPPSFRT VKP+   
Sbjct: 1   MGCFKVLKSKKKKAERTAYIKRINPQELTPTTLPEPKLQSRTLQSAPPSFRTLVKPV--Q 58

Query: 61  NTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPL 120
              +  N+RTRALSAPSSL+  E  QDALAS E EEQEE KSR GLTKEQRS +PQPLP 
Sbjct: 59  PVKRIINSRTRALSAPSSLNTTE--QDALASNECEEQEELKSRVGLTKEQRSPNPQPLP- 115

Query: 121 PSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSD 180
             P  Q    LKATGSFK+G ASGPL+ASGPLPL     G LRNF  +E++ AC NF SD
Sbjct: 116 -LPSPQGTVVLKATGSFKAGNASGPLYASGPLPL--PPLGALRNFGYEELSNACLNFSSD 172

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           RC+SEGLSS++Y+ASFGDDAS SKK EATVTRL+PS+QG+KEFIN+VNTLASLQHP+LCK
Sbjct: 173 RCVSEGLSSIIYKASFGDDASGSKKLEATVTRLHPSTQGLKEFINEVNTLASLQHPHLCK 232

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           LLGFHAR+GSDQRML+YERL+HGSLDRL+YGRSDGP IDWNTR+K+ALCAAQGLTFLHEE
Sbjct: 233 LLGFHAREGSDQRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKVALCAAQGLTFLHEE 292

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLT 360
           GPFQAMYNEFSTANIQIDKDFSAKLSGYGC GHIPE D+ +SSVA ANLSVETLERGLLT
Sbjct: 293 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEADVCSSSVAVANLSVETLERGLLT 352

Query: 361 PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           PKSNVWSFGIVLLELLTG KNLDSRHPKEERNLVKWSRP+LADDCRLSLIMDP LKGRFP
Sbjct: 353 PKSNVWSFGIVLLELLTGHKNLDSRHPKEERNLVKWSRPYLADDCRLSLIMDPHLKGRFP 412

Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS 461
            KAARTVADIA RCLQ +P ERPTMR+I E L   +  K S
Sbjct: 413 AKAARTVADIAQRCLQMDPLERPTMRTIVEHLKIIQDMKYS 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735543|emb|CBI18037.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/461 (77%), Positives = 394/461 (85%), Gaps = 8/461 (1%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLN 60
           MGCF VLKSKKKK E+T ++KR+NPQE TPTTLPEP++ +R+LQSAPPSFRT VKP+   
Sbjct: 113 MGCFKVLKSKKKKAERTAYIKRINPQELTPTTLPEPKLQSRTLQSAPPSFRTLVKPV--Q 170

Query: 61  NTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLPL 120
              +  N+RTRALSAPSSL+  E  QDALAS E EEQEE KSR GLTKEQRS +PQPLP 
Sbjct: 171 PVKRIINSRTRALSAPSSLNTTE--QDALASNECEEQEELKSRVGLTKEQRSPNPQPLP- 227

Query: 121 PSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSD 180
             P  Q    LKATGSFK+G ASGPL+AS   PLP    G LRNF  +E++ AC NF SD
Sbjct: 228 -LPSPQGTVVLKATGSFKAGNASGPLYAS--GPLPLPPLGALRNFGYEELSNACLNFSSD 284

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           RC+SEGLSS++Y+ASFGDDAS SKK EATVTRL+PS+QG+KEFIN+VNTLASLQHP+LCK
Sbjct: 285 RCVSEGLSSIIYKASFGDDASGSKKLEATVTRLHPSTQGLKEFINEVNTLASLQHPHLCK 344

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           LLGFHAR+GSDQRML+YERL+HGSLDRL+YGRSDGP IDWNTR+K+ALCAAQGLTFLHEE
Sbjct: 345 LLGFHAREGSDQRMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKVALCAAQGLTFLHEE 404

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLT 360
           GPFQAMYNEFSTANIQIDKDFSAKLSGYGC GHIPE D+ +SSVA ANLSVETLERGLLT
Sbjct: 405 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEADVCSSSVAVANLSVETLERGLLT 464

Query: 361 PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           PKSNVWSFGIVLLELLTG KNLDSRHPKEERNLVKWSRP+LADDCRLSLIMDP LKGRFP
Sbjct: 465 PKSNVWSFGIVLLELLTGHKNLDSRHPKEERNLVKWSRPYLADDCRLSLIMDPHLKGRFP 524

Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS 461
            KAARTVADIA RCLQ +P ERPTMR+I E L   +  K S
Sbjct: 525 AKAARTVADIAQRCLQMDPLERPTMRTIVEHLKIIQDMKYS 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502644|ref|XP_004161702.1| PREDICTED: probable receptor-like protein kinase At5g15080-like [Cucumis sativus]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/465 (73%), Positives = 389/465 (83%), Gaps = 12/465 (2%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPI-PL 59
           MGCF  LKSKKK   Q++H K V  +E  PT LPEPQI TR+LQSAPPSF+TRVKP+ P 
Sbjct: 1   MGCFPALKSKKKNYSQSLHDKCVKSKEIVPTKLPEPQIRTRTLQSAPPSFKTRVKPVQPA 60

Query: 60  NNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPLP 119
           N    A  +R R LSAPSSLDAAE  QDAL+SVE+EE EE   R G +KEQRS SPQPLP
Sbjct: 61  NG---AAGSRVRTLSAPSSLDAAE--QDALSSVEYEEPEEPIGRFGFSKEQRSPSPQPLP 115

Query: 120 LPSPHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFS 179
              P  Q   +LK TGSFKS  +SGPL++SGPLPLPP G   +RNF  +E++AACHNF +
Sbjct: 116 --LPSPQVIVALKNTGSFKSVASSGPLYSSGPLPLPPVGA--VRNFSYEEISAACHNFSA 171

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
           + C+SE LSS++YRASFGDD STSKKFEATVT  +PS+QG +EF+++V+TL SLQHPNLC
Sbjct: 172 ESCVSESLSSLIYRASFGDDTSTSKKFEATVTFRHPSNQGFREFVSEVSTLTSLQHPNLC 231

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           KLLGFH  +GS QRML+YERLFHGSLDRL+YGRSDGPPIDWNTR+KIALCAAQGLTFLHE
Sbjct: 232 KLLGFHGHEGSGQRMLVYERLFHGSLDRLLYGRSDGPPIDWNTRIKIALCAAQGLTFLHE 291

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI--PETDISNSSVAAANLSVETLERG 357
           EGPFQAMYNEFSTANIQIDKDFSAKLSGYGC G I  PET+ISN+SV +A LS+ETLERG
Sbjct: 292 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGQIPTPETEISNNSVGSAYLSMETLERG 351

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG 417
           LLTPKSNVWSFGIVLLELLTGR+NLDSR+PKEERNLVKWSRPFLADD RLSLIMDPQLKG
Sbjct: 352 LLTPKSNVWSFGIVLLELLTGRRNLDSRYPKEERNLVKWSRPFLADDGRLSLIMDPQLKG 411

Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS 462
           RFP KAARTVADIA +CLQK+PSERPTMR++ E L   ++ K SS
Sbjct: 412 RFPTKAARTVADIAQKCLQKDPSERPTMRNVVEHLKIIQNLKQSS 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439805|ref|XP_004137676.1| PREDICTED: probable receptor-like protein kinase At5g15080-like [Cucumis sativus] gi|449523914|ref|XP_004168968.1| PREDICTED: probable receptor-like protein kinase At5g15080-like [Cucumis sativus]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/465 (72%), Positives = 389/465 (83%), Gaps = 12/465 (2%)

Query: 1   MGCFTVLKSKKKKPEQTVHLKRVN-PQEHTPTTLPEPQIPTRSLQSAPPSFRTRVKPI-P 58
           M CFTV K+KKK+P+Q V++K VN  +EH P  LPEPQ+ TRSLQSAPPSFRTRVKPI P
Sbjct: 1   MPCFTVWKTKKKRPDQPVYVKPVNTKEEHLPAILPEPQLETRSLQSAPPSFRTRVKPIQP 60

Query: 59  LNNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSRAGLTKEQRSSSPQPL 118
           +NN  K ++NR RALSAPS LDAAE  QDAL +++++  +E K   GL KEQ+SS PQPL
Sbjct: 61  VNN--KVSSNRARALSAPSYLDAAE--QDALGAIDYDAHDEPKLYIGLNKEQKSSGPQPL 116

Query: 119 PLPSPHTQSAASLKATGSFKSGTASGPLFASG--PLPLPPTGTGTLRNFPLDEVAAACHN 176
           P   P  Q+ ASLK +GSFKS T+S         PLPLPPTG+  LRNF  +EV+AACH+
Sbjct: 117 P--LPSPQATASLKISGSFKSVTSSSSGSLYSSGPLPLPPTGS--LRNFSFEEVSAACHH 172

Query: 177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP 236
           F SDRC+SEGLSS +Y+ASFGDD+S+ +KFEATV+RL  S+QG++EF+N+VNTLAS QHP
Sbjct: 173 FSSDRCMSEGLSSFIYKASFGDDSSSLRKFEATVSRLYSSNQGLREFVNEVNTLASFQHP 232

Query: 237 NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           NLCKLLGFHARDGS+QRML+YERLFHGSLDRL+Y RS+GP IDWN+R+KIALCAAQGL F
Sbjct: 233 NLCKLLGFHARDGSEQRMLVYERLFHGSLDRLLYSRSEGPLIDWNSRMKIALCAAQGLAF 292

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER 356
           LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC GHIP+ +I N+ V  A+LSVETLER
Sbjct: 293 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPDPEIPNNPVIGASLSVETLER 352

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
           GLLTPKSNVWSFGIVLLELLTGR+NLD+RHPKEERNLVKWSRPFL DDCRLSLIMDPQLK
Sbjct: 353 GLLTPKSNVWSFGIVLLELLTGRRNLDNRHPKEERNLVKWSRPFLTDDCRLSLIMDPQLK 412

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS 461
           GRFP KA+R VADIA RCL KEPSERPTMR+I E L   +  K S
Sbjct: 413 GRFPSKASRIVADIAQRCLLKEPSERPTMRAIVERLSSIQDVKYS 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
TAIR|locus:2077768	557	ATSIK [Arabidopsis thaliana (t	0.955	0.811	0.604	4.3e-143
TAIR|locus:2147805	493	AT5G15080 [Arabidopsis thalian	0.630	0.604	0.376	5.1e-51
TAIR|locus:2064920	435	AT2G39110 [Arabidopsis thalian	0.678	0.737	0.349	5.2e-49
TAIR|locus:2100282	490	AT3G01300 [Arabidopsis thalian	0.604	0.583	0.377	8.5e-49
TAIR|locus:2180127	389	NAK [Arabidopsis thaliana (tax	0.625	0.760	0.372	1.1e-48
TAIR|locus:2095517	453	AT3G28690 [Arabidopsis thalian	0.689	0.719	0.342	4.7e-48
TAIR|locus:2053250	462	AT2G28940 [Arabidopsis thalian	0.613	0.627	0.376	1.2e-47
TAIR|locus:2150019	410	AT5G01020 [Arabidopsis thalian	0.600	0.692	0.381	1.2e-47
TAIR|locus:2085069	418	AT3G09830 [Arabidopsis thalian	0.615	0.696	0.357	2.6e-47
TAIR|locus:2205050	387	AT1G69790 [Arabidopsis thalian	0.621	0.759	0.393	1.4e-46

TAIR|locus:2077768 ATSIK [Arabidopsis thaliana (taxid:3702)]

 Score = 1344 (478.2 bits), Expect = 4.3e-143, Sum P(2) = 4.3e-143
 Identities = 283/468 (60%), Positives = 330/468 (70%)

Query:     1 MGCFTVLKSKKKKPEQTVHLKRVNPQEHTPTTLPEP-QIPTRSLQSAPPSFRTRVKPIPL 59
             +GCF  LKSKKK+   +V +KR++ +E  PT LPEP +IP+R+LQSAPPSFRTRVKPI  
Sbjct:     3 LGCFP-LKSKKKRG--SVSMKRLDLEESKPTALPEPPKIPSRNLQSAPPSFRTRVKPIQS 59

Query:    60 XXXXXXXXXXXXX-LSAPXXXXXXXXXXXXXXSVEFEEQEESKSRAGLTKEQRXXXXXXX 118
                           +SAP                  E+ E+ +     TKE         
Sbjct:    60 NNGGTGEMSSRARVMSAPSSIHGAAERDLLAGVYHDEQDEQPRDPRTSTKES-----SPQ 114

Query:   119 XXXXXXXXXAASLKATGSFKS-GTASGPLFASXXXXXXXXX--XXXXRNFPLDEVAAACH 175
                       +SLK  GSFKS   +SG L +S               R+F  DEV AAC+
Sbjct:   115 PLPLPSPRTGSSLKNWGSFKSFNGSSGRLSSSAAVSGPLPLPPSGSVRSFSYDEVMAACN 174

Query:   176 NFFSDRCISEGLSSVMYRASFGDDASTS--KKFEATVTRLNPSSQGVKEFINDVNTLASL 233
              F SDRC+ EGLSSVMY ASFGD+ASTS  KK +ATV RL+  +Q ++EFIN+VNTLASL
Sbjct:   175 AFSSDRCVMEGLSSVMYMASFGDEASTSGLKKVDATVVRLHVITQSIREFINEVNTLASL 234

Query:   234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
             QH NLCKL+G+HARDGSD RML+YERL  GSLDRL++GRSDGPP+DWNTR+KIALCAAQG
Sbjct:   235 QHQNLCKLVGYHARDGSDTRMLVYERLALGSLDRLLHGRSDGPPLDWNTRMKIALCAAQG 294

Query:   294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXXET 353
             LTFLHEEGPFQAMYNEFSTANIQ+DKDFSAKLSGYGCAGH PET+             ET
Sbjct:   295 LTFLHEEGPFQAMYNEFSTANIQVDKDFSAKLSGYGCAGHAPETE-TSNSSALANLSVET 353

Query:   354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP 413
             LERGLLTPKSNVWS+GIVLLE+LTGRKN+D  +PKEERNLVKWSR FLADDCRLSLIMDP
Sbjct:   354 LERGLLTPKSNVWSYGIVLLEMLTGRKNMDGSYPKEERNLVKWSRAFLADDCRLSLIMDP 413

Query:   414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS 461
             QLKGRFP KAAR++ADIA +CLQ EPSERPTMR+I ++L   +  K S
Sbjct:   414 QLKGRFPAKAARSIADIAQKCLQVEPSERPTMRNIVDQLKIIQDMKYS 461

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2147805 AT5G15080 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 117/311 (37%), Positives = 179/311 (57%)

Query:   163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS- 217
             R F  +++  +  NF  +  + EG    +++    ++ +   K        V  LNP   
Sbjct:   128 RKFTFNDLKLSTRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNPDGL 187

Query:   218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP 277
             QG KE++ ++N L +L HPNL KL+G+   D  DQR+L+YE +  GSL+  ++ RS   P
Sbjct:   188 QGHKEWLAEINFLGNLLHPNLVKLVGYCIED--DQRLLVYEFMPRGSLENHLFRRS--LP 243

Query:   278 IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE- 336
             + W+ R+KIAL AA+GL+FLHEE     +Y +F T+NI +D D++AKLS +G A   P+ 
Sbjct:   244 LPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPDE 303

Query:   337 --TDIXXXXXXXXXXXX-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL 393
               T +             E +  G LT KS+V+SFG+VLLE+LTGR+++D   P  E NL
Sbjct:   304 GKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNL 363

Query:   394 VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
             V+W+RP L D  R   ++DP+L+G F +K A+ V  +A +CL ++P  RP M  + E L 
Sbjct:   364 VEWARPHLLDKRRFYRLLDPRLEGHFSIKGAQKVTQLAAQCLSRDPKIRPKMSDVVEALK 423

Query:   454 RQESRKSSSST 464
                  K  +S+
Sbjct:   424 PLPHLKDMASS 434

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2064920 AT2G39110 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 115/329 (34%), Positives = 182/329 (55%)

Query:   134 TGS-FKSGTASGPLFASXXXXXXXXXXXXXRNFPLDEVAAACHNFFSDRCISEGLSSVMY 192
             +GS F S T++     S             + F LD++  A  NF     I EG    ++
Sbjct:    46 SGSEFNSDTSTATSITSSLHVLSETHSNNLKVFVLDDLKTATKNFSRSLMIGEGGFGGVF 105

Query:   193 RASFGDDASTSKKFEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD 251
             R    +   + KK +  V +L+    QG KE++ +VN L  ++HPNL KL+G+ A D   
Sbjct:   106 RGVIQNPQDSRKKIDIAVKQLSRRGLQGHKEWVTEVNVLGVVEHPNLVKLIGYCAEDDER 165

Query:   252 --QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNE 309
               QR+L+YE + + S+   +  R    P+ W+TR+KIA   A+GL +LH+   FQ ++ +
Sbjct:   166 GIQRLLVYEYVQNRSVQDHLSNRFIVTPLPWSTRLKIAQDTARGLAYLHQGMEFQIIFRD 225

Query:   310 FSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXX----ETLERGLLTPKSNV 365
             F ++NI +D++++AKLS +G A   P   I                E ++ G LT KS+V
Sbjct:   226 FKSSNILLDENWNAKLSDFGLARMGPSDGITHVSTAVVGTIGYAAPEYIQTGHLTAKSDV 285

Query:   366 WSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR 425
             WS+GI L EL+TGR+  D   P+ E+N+++W RP L+D  +  +I+DP+L+G + LK+A 
Sbjct:   286 WSYGIFLYELITGRRPFDRNRPRNEQNILEWIRPHLSDIKKFKMIIDPRLEGNYYLKSAL 345

Query:   426 TVADIALRCLQKEPSERPTMRSIFEELDR 454
              +A +A RCL  +   RPTM  + E L+R
Sbjct:   346 KLAAVANRCLMVKAKARPTMSQVSEMLER 374

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2100282 AT3G01300 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 113/299 (37%), Positives = 173/299 (57%)

Query:   163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKK----FEATVTRLNPSS- 217
             + F   ++  A  NF  +  + EG    +++    ++ +   K        V  LNP   
Sbjct:   122 KKFSFIDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNPDGL 181

Query:   218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP 277
             QG KE++ ++N L +L HPNL KL+G+   D  DQR+L+YE +  GSL+  ++ RS   P
Sbjct:   182 QGHKEWLAEINYLGNLLHPNLVKLVGYCIED--DQRLLVYEFMPRGSLENHLFRRS--LP 237

Query:   278 IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE- 336
             + W+ R+KIAL AA+GL+FLHEE     +Y +F T+NI +D +++AKLS +G A   P+ 
Sbjct:   238 LPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLDGEYNAKLSDFGLAKDAPDE 297

Query:   337 --TDIXXXXXXXXXXXX-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL 393
               T +             E +  G LT KS+V+SFG+VLLE+LTGR+++D   P  E NL
Sbjct:   298 GKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNL 357

Query:   394 VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
             V+W+RP L D  R   ++DP+L+G F +K A+ V  +A +CL ++   RP M  + E L
Sbjct:   358 VEWARPHLLDKRRFYRLLDPRLEGHFSVKGAQKVTQLAAQCLSRDSKIRPKMSEVVEVL 416

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2180127 NAK [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 116/311 (37%), Positives = 177/311 (56%)

Query:   163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEAT-----VTRLNPSS 217
             +NF L E+ +A  NF  D  + EG    +++    D++S +     T     V RLN   
Sbjct:    54 KNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWI-DESSLAPSKPGTGIVIAVKRLNQEG 112

Query:   218 -QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG- 275
              QG +E++ ++N L  L HPNL KL+G+   +  + R+L+YE +  GSL+  ++ R    
Sbjct:   113 FQGHREWLAEINYLGQLDHPNLVKLIGYCLEE--EHRLLVYEFMTRGSLENHLFRRGTFY 170

Query:   276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
              P+ WNTRV++AL AA+GL FLH   P Q +Y +F  +NI +D +++AKLS +G A   P
Sbjct:   171 QPLSWNTRVRMALGAARGLAFLHNAQP-QVIYRDFKASNILLDSNYNAKLSDFGLARDGP 229

Query:   336 ETDIXXXXX----XXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER 391
               D                 E L  G L+ KS+V+SFG+VLLELL+GR+ +D   P  E 
Sbjct:   230 MGDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEH 289

Query:   392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE 451
             NLV W+RP+L +  RL  +MDP+L+G++ L  A  +A +AL C+  +   RPTM  I + 
Sbjct:   290 NLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKT 349

Query:   452 LDRQESRKSSS 462
             ++    +K +S
Sbjct:   350 MEELHIQKEAS 360

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2095517 AT3G28690 [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 118/345 (34%), Positives = 190/345 (55%)

Query:   129 ASLKATGSFKSGTASGPLFASXXXXXXXXXXXXXRNFPLDEVAAACHNFFSDRCISEGLS 188
             A  K TG  +SG+++ PL +              R F  +++  A  NF  +  + EG  
Sbjct:    61 APTKDTGCAESGSST-PLMSGELKYSSKL-----RIFMFNDLKLATRNFRPESLLGEGGF 114

Query:   189 SVMYRASFGDDASTSKK----FEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLG 243
               +++    ++ +   K        V  LNP   QG KE++ ++N L +L HP+L KL+G
Sbjct:   115 GCVFKGWIEENGTAPVKPGTGLTVAVKTLNPDGLQGHKEWLAEINFLGNLVHPSLVKLVG 174

Query:   244 FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPF 303
             +   +  DQR+L+YE +  GSL+  ++ R+   P+ W+ R+KIAL AA+GL FLHEE   
Sbjct:   175 YCMEE--DQRLLVYEFMPRGSLENHLFRRT--LPLPWSVRMKIALGAAKGLAFLHEEAEK 230

Query:   304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---TDIXXXXXXXXXXXX-ETLERGLL 359
               +Y +F T+NI +D +++AKLS +G A   P+   + +             E +  G L
Sbjct:   231 PVIYRDFKTSNILLDGEYNAKLSDFGLAKDAPDEKKSHVSTRVMGTYGYAAPEYVMTGHL 290

Query:   360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
             T KS+V+SFG+VLLE+LTGR+++D   P  E+NLV+W RP L D  R   ++DP+L+G +
Sbjct:   291 TTKSDVYSFGVVLLEILTGRRSVDKSRPNGEQNLVEWVRPHLLDKKRFYRLLDPRLEGHY 350

Query:   420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSST 464
              +K A+    +A +CL ++   RP M  + E L    + K  +S+
Sbjct:   351 SIKGAQKATQVAAQCLNRDSKARPKMSEVVEALKPLPNLKDFASS 395

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2053250 AT2G28940 [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 113/300 (37%), Positives = 167/300 (55%)

Query:   165 FPLDEVAAACHNFFSDRCISEGLSSVMYRA--SFGDDASTSKKFEATVTRLNPSS-QGVK 221
             F   E+  A   F     I EG    +YR      D      K    V +LN    QG K
Sbjct:    90 FTFKELKIATKGFNRGLLIGEGGFGCVYRGVVDVSDSNGFDSKINVAVKQLNRQGLQGHK 149

Query:   222 EFINDVNTLASLQHPNLCKLLGFHARDGSD--QRMLIYERLFHGSLDRLIYGRSDGPPID 279
             E+IN+VN L  + HPNL KL+G+ A D     QR+L+YE + + SL+  + GR     + 
Sbjct:   150 EWINEVNFLGVVNHPNLVKLVGYCADDDERGMQRLLVYELMCNKSLEDHLVGRVVSVSLP 209

Query:   280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
             W  R+KIA  AAQGL +LHEE  FQ ++ +F ++NI +D+ F AKLS +G A   P   +
Sbjct:   210 WMMRLKIAQDAAQGLAYLHEEMDFQLIFRDFKSSNILLDERFGAKLSDFGLARQGPPEGL 269

Query:   340 XXXXXXXXXXXX----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
                             E ++ G LT KS+VWSFG+VL EL+TGR+ +D   P+ E+ L++
Sbjct:   270 GHVSTSVVGTVGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVDRNRPRGEQKLLE 329

Query:   396 WSRPFLADDCRLSLIMDPQLKGRFP-LKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             W +P+++D  +  LI+DP+L+G++  +K+ + VA +A +CL K+P  RP M  +   L R
Sbjct:   330 WVKPYVSDSKKFHLIVDPRLEGQYYCMKSVQRVAALANKCLMKQPKSRPKMSEVVSLLGR 389

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2150019 AT5G01020 [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 113/296 (38%), Positives = 168/296 (56%)

Query:   165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTS-KKFEATVTRLNPSS-QGVKE 222
             F L E+     +F  D  + EG    +Y+    D+     K     V  LN    QG +E
Sbjct:    57 FTLFELETITKSFRPDYILGEGGFGTVYKGYIDDNLRVGLKSLPVAVKVLNKEGLQGHRE 116

Query:   223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNT 282
             ++ +VN L  L+HPNL KL+G+   D  D R+L+YE +  GSL+  ++ R    P+ W+ 
Sbjct:   117 WLTEVNFLGQLRHPNLVKLIGYCCED--DHRLLVYEFMLRGSLENHLF-RKTTAPLSWSR 173

Query:   283 RVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP---ETD 338
             R+ IAL AA+GL FLH  E P   +Y +F T+NI +D D++AKLS +G A   P   ET 
Sbjct:   174 RMMIALGAAKGLAFLHNAERP--VIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETH 231

Query:   339 IXXXXXXXXXXXX-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
             +             E +  G LT +S+V+SFG+VLLE+LTGRK++D   P +E+NLV W+
Sbjct:   232 VSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLEMLTGRKSVDKTRPSKEQNLVDWA 291

Query:   398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
             RP L D  +L  I+DP+L+ ++ ++AA+    +A  CL + P  RP M  + E L+
Sbjct:   292 RPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLE 347

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2085069 AT3G09830 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 107/299 (35%), Positives = 175/299 (58%)

Query:   163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-QGVK 221
             R F + ++ +A  NF     I EG    ++R +  +   +S K E  V +L     QG K
Sbjct:    70 REFSITDLKSATKNFSRSVMIGEGGFGCVFRGTVRNLEDSSVKIEVAVKQLGKRGLQGHK 129

Query:   222 EFINDVNTLASLQHPNLCKLLGFHARDGSD--QRMLIYERLFHGSLDRLIYGRSDGPPID 279
             E++ +VN L  ++H NL KLLG+ A D     QR+L+YE + + S++  +  RS    + 
Sbjct:   130 EWVTEVNFLGIVEHTNLVKLLGYCAEDDERGIQRLLVYEYMPNRSVEFHLSPRSL-TVLT 188

Query:   280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
             W+ R++IA  AA+GLT+LHEE  FQ ++ +F ++NI +D+D+ AKLS +G A   P   +
Sbjct:   189 WDLRLRIAQDAARGLTYLHEEMEFQIIFRDFKSSNILLDEDWKAKLSDFGLARLGPSEGL 248

Query:   340 XXXXX----XXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
                             E ++ G LT KS+VW +G+ L EL+TGR+ +D   PK E+ L++
Sbjct:   249 THVSTDVVGTMGYAAPEYIQTGRLTSKSDVWGYGVFLYELITGRRPVDRNRPKGEQKLLE 308

Query:   396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             W RP+L+D  +  LI+DP+L+G++P+K+ + +A +A RCL +    RP M  + E +++
Sbjct:   309 WVRPYLSDTRKFKLILDPRLEGKYPIKSVQKLAVVANRCLVRNSKARPKMSEVLEMVNK 367

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2205050 AT1G69790 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 122/310 (39%), Positives = 171/310 (55%)

Query:   165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDA-STSKK---FEATVTRLNPSS-QG 219
             F  +E+  A  NF  +  I EG    +Y+   G+ + S SK        V +L     QG
Sbjct:    72 FTFNELKTATRNFKPNSMIGEGGFGCVYKGWIGERSLSPSKPGSGMVVAVKKLKSEGFQG 131

Query:   220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
              KE++ +V+ L  L H NL KL+G+   +G ++R+L+YE +  GSL+  ++ R    PI 
Sbjct:   132 HKEWLTEVHYLGRLHHMNLVKLIGY-CLEG-EKRLLVYEYMPKGSLENHLFRRG-AEPIP 188

Query:   280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
             W TR+K+A  AA+GL+FLHE    + +Y +F  +NI +D DF+AKLS +G A   P  D 
Sbjct:   189 WKTRMKVAFSAARGLSFLHEA---KVIYRDFKASNILLDVDFNAKLSDFGLAKAGPTGDR 245

Query:   340 XXXXX----XXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
                             E +  G LT KS+V+SFG+VLLELL+GR  LD      ERNLV 
Sbjct:   246 THVTTQVIGTQGYAAPEYIATGRLTSKSDVYSFGVVLLELLSGRPTLDKSKVGVERNLVD 305

Query:   396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ 455
             W+ P+L D  ++  IMD +L G++P K A   A+IALRCL  EP  RP M  +   L + 
Sbjct:   306 WAIPYLVDRRKVFRIMDTKLGGQYPHKGACAAANIALRCLNTEPKLRPDMADVLSTLQQL 365

Query:   456 E-SRKSSSST 464
             E S K   ST
Sbjct:   366 ETSSKKMGST 375

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	9e-25
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-22
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-22
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-21
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-17
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-16
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-15
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-14
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	9e-14
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-13
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	2e-13
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	1e-12
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-12
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	5e-12
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	6e-12
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	9e-12
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-11
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-11
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-11
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-11
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-11
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	4e-11
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	5e-11
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	6e-11
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	7e-11
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-10
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	1e-10
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-10
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-10
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-10
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-10
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-10
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	3e-10
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	3e-10
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	3e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	1e-09
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-09
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-09
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-09
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	5e-09
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	5e-09
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	7e-09
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	9e-09
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-08
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-08
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-08
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-08
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	3e-08
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-08
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-08
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-08
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-08
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	5e-08
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	7e-08
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	7e-08
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	8e-08
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-07
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	1e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	1e-07
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-07
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	2e-07
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	2e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-07
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-07
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-07
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-07
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	3e-07
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-07
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	3e-07
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	4e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-07
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	4e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-07
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-06
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-06
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-06
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	2e-06
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	3e-06
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	3e-06
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-06
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	4e-06
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	4e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	4e-06
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	4e-06
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	5e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	5e-06
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	6e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	8e-06
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	8e-06
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-05
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	2e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	3e-05
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	3e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-05
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	4e-05
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	4e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	5e-05
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	6e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	6e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	1e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	1e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	2e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-04
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	2e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	3e-04
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-04
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	3e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	3e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	3e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	4e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	4e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	4e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	4e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	4e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	4e-04
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	5e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	6e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	7e-04
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	0.001
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.001
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.001
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	0.001
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	0.001
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	0.002
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	0.002
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	0.004
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	0.004

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  102 bits (257), Expect = 9e-25
 Identities = 54/258 (20%), Positives = 103/258 (39%), Gaps = 43/258 (16%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD----- 266
           + + S +  K+F+ +   +  L HPN+ +LLG    +      L+ E +  G L      
Sbjct: 32  KEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEP--LYLVLEYMEGGDLLDYLRK 89

Query: 267 -RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKD 320
            R ++   +   +     +  A+  A+G+ +L           +F     +  N  + +D
Sbjct: 90  SRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS--------KKFVHRDLAARNCLVGED 141

Query: 321 FSAKLSGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVWSFGIVLLELL 376
              K+S +G +  + + D              ++ E+L+ G+ T KS+VWSFG++L E+ 
Sbjct: 142 LVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIF 201

Query: 377 T-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
           T G         +E    ++          RL            P      + ++ L C 
Sbjct: 202 TLGATPYPGLSNEEVLEYLR-------KGYRLP----------KPEYCPDELYELMLSCW 244

Query: 436 QKEPSERPTMRSIFEELD 453
           Q +P +RPT   + E L+
Sbjct: 245 QLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  101 bits (253), Expect = 3e-24
 Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 41/248 (16%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  +EF+ + + +  L HPN+ +LLG   +       ++ E +  G L    + R  G
Sbjct: 41  SEEEREEFLEEASIMKKLSHPNIVRLLGVCTQGE--PLYIVTEYMPGGDLLD--FLRKHG 96

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             +     +++AL  A+G+ +L            F     +  N  + ++   K+S +G 
Sbjct: 97  EKLTLKDLLQMALQIAKGMEYLES--------KNFVHRDLAARNCLVTENLVVKISDFGL 148

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
           +  I E D          L +     E+L+ G  T KS+VWSFG++L E+ T G +    
Sbjct: 149 SRDIYEDDYYRKRGGG-KLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG 207

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
              +E   L++       D  RL     P+     P      + ++ L+C   +P +RPT
Sbjct: 208 MSNEEVLELLE-------DGYRL-----PR-----PENCPDELYELMLQCWAYDPEDRPT 250

Query: 445 MRSIFEEL 452
              + E+L
Sbjct: 251 FSELVEDL 258

Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 95.8 bits (239), Expect = 2e-22
 Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 32/277 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEA--TVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           R +  G    +Y+A       T K   A   + + +  S+  +    ++  L  L HPN+
Sbjct: 5   RKLGSGSFGTVYKAK---HKGTGKIV-AVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
            +L+        D   L+ E    G L   +   S G P+  +   KIAL   +GL +LH
Sbjct: 61  VRLIDAFEDK--DHLYLVMEYCEGGDLFDYL---SRGGPLSEDEAKKIALQILRGLEYLH 115

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSVETLER 356
             G    ++ +    NI +D++   K++ +G A  + ++  S ++       ++ E L  
Sbjct: 116 SNG---IIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLG 172

Query: 357 GLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL 415
           G    PK +VWS G++L ELLTG+                     L     +  I+ P L
Sbjct: 173 GNGYGPKVDVWSLGVILYELLTGK-------------PPFSGENILDQLQLIRRILGPPL 219

Query: 416 KGRFPLK--AARTVADIALRCLQKEPSERPTMRSIFE 450
           +   P     +    D+  +CL K+PS+RPT   I +
Sbjct: 220 EFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQ 256

Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 95.3 bits (238), Expect = 3e-22
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 38/250 (15%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           + + S Q ++EF+ +   +  L HPN+ KLLG    +  +   ++ E +  G L   +  
Sbjct: 37  KEDASEQQIEEFLREARIMRKLDHPNVVKLLGV-CTE-EEPLYIVMEYMEGGDLLSYL-- 92

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
           R + P +  +  +  AL  A+G+ +L  +         F     +  N  + ++   K+S
Sbjct: 93  RKNRPKLSLSDLLSFALQIARGMEYLESKN--------FIHRDLAARNCLVGENLVVKIS 144

Query: 327 GYGCAGHIPETDISNSSVAAAN---LSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G +  + + D             ++ E+L+ G  T KS+VWSFG++L E+ T G +  
Sbjct: 145 DFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPY 204

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
                +E    +K       +  RL            P      + D+ L+C  ++P +R
Sbjct: 205 PGMSNEEVLEYLK-------NGYRL----------PQPPNCPPELYDLMLQCWAEDPEDR 247

Query: 443 PTMRSIFEEL 452
           PT   + E L
Sbjct: 248 PTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 63/274 (22%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           + EG    +Y A    D  T KK    + +   SS  ++E + ++  L  L HPN+ KL 
Sbjct: 1   LGEGGFGTVYLAR---DKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLY 57

Query: 243 GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGP 302
           G    +  +   L+ E    GSL  L+  + +   +  +  ++I L   +GL +LH  G 
Sbjct: 58  GVFEDE--NHLYLVMEYCEGGSLKDLL--KENEGKLSEDEILRILLQILEGLEYLHSNG- 112

Query: 303 FQAMYNEFSTANIQIDKD-FSAKLSGYGCAGHIPETDISNSSVAA--ANLSVETLE-RGL 358
              ++ +    NI +D D    KL+ +G +  +        ++    A ++ E L  +G 
Sbjct: 113 --IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGY 170

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
            + KS++WS G++L EL                                     P+LK  
Sbjct: 171 YSEKSDIWSLGVILYEL-------------------------------------PELK-- 191

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                     D+  + LQK+P +RP+ + I E L
Sbjct: 192 ----------DLIRKMLQKDPEKRPSAKEILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 43/253 (16%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           + + S Q ++EF+ +   +  L HPN+ KLLG    +  +  M++ E +  G L   +  
Sbjct: 37  KEDASEQQIEEFLREARIMRKLDHPNIVKLLGV-CTE-EEPLMIVMEYMPGGDLLDYL-R 93

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
           ++    +  +  +  AL  A+G+ +L  +         F     +  N  + ++   K+S
Sbjct: 94  KNRPKELSLSDLLSFALQIARGMEYLESKN--------FIHRDLAARNCLVGENLVVKIS 145

Query: 327 GYGCAGHIPETDISNSSVAAAN---LSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G +  + + D             ++ E+L+ G  T KS+VWSFG++L E+ T G +  
Sbjct: 146 DFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPY 205

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF---PLKAARTVADIALRCLQKEP 439
                 E    +K                    KG     P      +  + L+C  ++P
Sbjct: 206 PGMSNAEVLEYLK--------------------KGYRLPKPPNCPPELYKLMLQCWAEDP 245

Query: 440 SERPTMRSIFEEL 452
            +RPT   + E L
Sbjct: 246 EDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 87.2 bits (217), Expect = 2e-19
 Identities = 57/283 (20%), Positives = 99/283 (34%), Gaps = 50/283 (17%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             + EG    +Y A    D  T K     V +     +  +  + ++  L  L+HPN+ +
Sbjct: 5   EKLGEGSFGKVYLAR---DKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVR 61

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L      +  D+  L+ E    G L  L+        +  +            L +LH +
Sbjct: 62  LYDVF--EDEDKLYLVMEYCEGGDLFDLL---KKRGRLSEDEARFYLRQILSALEYLHSK 116

Query: 301 G-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVE 352
           G       P           NI +D+D   KL+ +G A  +   +   + V     ++ E
Sbjct: 117 GIVHRDLKP----------ENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPE 166

Query: 353 TLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD 412
            L         ++WS G++L ELLTG+                   PF   D +L  +  
Sbjct: 167 VLLGKGYGKAVDIWSLGVILYELLTGK------------------PPF-PGDDQLLELFK 207

Query: 413 PQLKGRFPL-----KAARTVADIALRCLQKEPSERPTMRSIFE 450
              K + P        +    D+  + L K+P +R T     +
Sbjct: 208 KIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAEEALQ 250

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 30/258 (11%)

Query: 220 VKEFINDVNTLAS--------LQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           VKE INDVN++ S        LQHPN+ KL+G    +      LI+E +   +L  ++  
Sbjct: 720 VKE-INDVNSIPSSEIADMGKLQHPNIVKLIGLCRSE--KGAYLIHEYIEGKNLSEVLRN 776

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
            S      W  R KIA+  A+ L FLH       +    S   I ID      L      
Sbjct: 777 LS------WERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL----RL 826

Query: 332 GHIPE---TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
             +P    TD     +++A ++ ET E   +T KS+++ FG++L+ELLTG+   D+    
Sbjct: 827 S-LPGLLCTDTK-CFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGV 884

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTV--ADIALRCLQKEPSERPTMR 446
              ++V+W+R +   DC L + +DP ++G   +     V   ++AL C   +P+ RP   
Sbjct: 885 HG-SIVEWAR-YCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCAN 942

Query: 447 SIFEELDRQESRKSSSST 464
            + + L+      SS  T
Sbjct: 943 DVLKTLESASRSSSSCVT 960

Length = 968

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 48/258 (18%)

Query: 201 STSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER 259
                 E  +  +   S+  KE I N++  L   +HPN+ K  G + +   D+  ++ E 
Sbjct: 21  HKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKK--DELWIVMEF 78

Query: 260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK 319
              GSL  L+  +S    +  +    +     +GL +LH  G    ++ +   ANI +  
Sbjct: 79  CSGGSLKDLL--KSTNQTLTESQIAYVCKELLKGLEYLHSNG---IIHRDIKAANILLTS 133

Query: 320 DFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTG 378
           D   KL  +G +  + +T   N+ V     ++ E +       K+++WS GI  +EL  G
Sbjct: 134 DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEG 193

Query: 379 R---KNLDS---------RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAART 426
           +     L             P   RN  KWS  F                          
Sbjct: 194 KPPYSELPPMKALFKIATNGPPGLRNPEKWSDEF-------------------------- 227

Query: 427 VADIALRCLQKEPSERPT 444
             D   +CLQK P +RPT
Sbjct: 228 -KDFLKKCLQKNPEKRPT 244

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 19/272 (6%)

Query: 191 MYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASLQHPNLCKLLGFHARD 248
           + R     D +     +  V  LN S   Q   +F  ++  L +L H N+ K  G   + 
Sbjct: 22  LCRYDPLGDNTGE---QVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKP 78

Query: 249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYN 308
           G     LI E L  GSL    Y +     I+    +  +    +G+ +L  +   + ++ 
Sbjct: 79  GGRSLRLIMEYLPSGSLR--DYLQRHRDQINLKRLLLFSSQICKGMDYLGSQ---RYIHR 133

Query: 309 EFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKS 363
           + +  NI ++ +   K+S +G A  +PE              +     E L     +  S
Sbjct: 134 DLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSAS 193

Query: 364 NVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLK 422
           +VWSFG+ L EL T G  +     P  E   +           RL  ++    +   P  
Sbjct: 194 DVWSFGVTLYELFTYGDPSQ---SPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPS 250

Query: 423 AARTVADIALRCLQKEPSERPTMRSIFEELDR 454
               V D+   C + EP +RP+   +   +DR
Sbjct: 251 CPDEVYDLMKLCWEAEPQDRPSFADLILIVDR 282

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 73.8 bits (182), Expect = 7e-15
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 59/283 (20%)

Query: 182 CISEGLSSVMYRASFGDDASTS--KKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
            I  G   V+Y+    +       K+            + +K  + +++ L +L+HPN+ 
Sbjct: 7   LIGRGAFGVVYKGLNLETGDFVAIKQISLE----KIKEEALKSIMQEIDLLKNLKHPNIV 62

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAA------QG 293
           K +G      SD   +I E   +GSL ++I  +    P          L A       QG
Sbjct: 63  KYIGSI-ET-SDSLYIILEYAENGSLRQII-KKFGPFPES--------LVAVYVYQVLQG 111

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSV 351
           L +LHE+G    ++ +   ANI   KD   KL+ +G A  + +    ++SV      ++ 
Sbjct: 112 LAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAP 168

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN-------LVKWSRPFLADD 404
           E +E    +  S++WS G  ++ELLTG        P  + N       +V+   P L + 
Sbjct: 169 EVIEMSGASTASDIWSLGCTVIELLTGNP------PYYDLNPMAALFRIVQDDHPPLPEG 222

Query: 405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS 447
                   P+LK            D  ++C QK+P+ RPT + 
Sbjct: 223 I------SPELK------------DFLMQCFQKDPNLRPTAKQ 247

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 35/255 (13%)

Query: 206 FEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL 265
            +  +  L   S   + F+ + N +  LQHP L +L   +A    +   +I E + +GSL
Sbjct: 31  TKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRL---YAVVTQEPIYIITEYMENGSL 87

Query: 266 -DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
            D L     +G  +  N  + +A   A+G+ F+  +     ++ +   ANI + +    K
Sbjct: 88  VDFL--KTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCK 142

Query: 325 LSGYGCAGHIPETDISNSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLELLT-GRK 380
           ++ +G A  I + + +    A   +   + E +  G  T KS+VWSFGI+L E++T GR 
Sbjct: 143 IADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRI 202

Query: 381 NLDS-RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP 439
                 +P+  +NL +  R    D+C   L                   ++   C +++P
Sbjct: 203 PYPGMTNPEVIQNLERGYRMPRPDNCPEELY------------------ELMRLCWKEKP 244

Query: 440 SERPT---MRSIFEE 451
            ERPT   +RS+ E+
Sbjct: 245 EERPTFEYLRSVLED 259

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 39/246 (15%)

Query: 217 SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP 276
           S   + F+ + + + +L+HPNL +LLG   +       ++ E +  GSL  + Y RS G 
Sbjct: 41  STAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNP--LYIVTEYMAKGSL--VDYLRSRGR 96

Query: 277 P-IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
             I    ++  AL   +G+ +L E+     ++ + +  N+ + +D  AK+S +G A    
Sbjct: 97  AVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKE-- 151

Query: 336 ETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE 390
               ++    +  L V     E L     + KS+VWSFGI+L E+ +  +    R P ++
Sbjct: 152 ----ASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD 207

Query: 391 --RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
              ++ K  R            M+       P      V  +   C + +P++RPT + +
Sbjct: 208 VVPHVEKGYR------------MEA------PEGCPPEVYKVMKDCWELDPAKRPTFKQL 249

Query: 449 FEELDR 454
            E+L  
Sbjct: 250 REQLAL 255

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 51/248 (20%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSLDRLIYGR 272
             S + ++    ++  L+SLQHPN+ +  G   RD     + I+ E +  GSL  L+   
Sbjct: 37  GDSEEELEALEREIRILSSLQHPNIVRYYG-SERDEEKNTLNIFLEYVSGGSLSSLL--- 92

Query: 273 SDGPPIDWNTRVKIALCAAQ---GLTFLHEEG-------PFQAMYNEFSTANIQIDKDFS 322
                +       I     Q   GL +LH  G                  ANI +D D  
Sbjct: 93  KKFGKLPEPV---IRKYTRQILEGLAYLHSNGIVHRDIKG----------ANILVDSDGV 139

Query: 323 AKLSGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVWSFGIVLLELLTG 378
            KL+ +GCA  + + +    + +       ++ E +        +++WS G  ++E+ TG
Sbjct: 140 VKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATG 199

Query: 379 RKNLDSRHPKEERNLVKWSR--PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
                 + P        WS     +A   +   I         P   +    D   +CL+
Sbjct: 200 ------KPP--------WSELGNPMAALYK---IGSSGEPPEIPEHLSEEAKDFLRKCLR 242

Query: 437 KEPSERPT 444
           ++P +RPT
Sbjct: 243 RDPKKRPT 250

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 70.1 bits (171), Expect = 2e-13
 Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 35/266 (13%)

Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T K     +  L  +   +++   ++  L+    P + K  G + +
Sbjct: 14  KGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK 73

Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           D   +  +I E L  GS LD L  G     P+D      I     +GL +LH E   + +
Sbjct: 74  D--TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLHSE---KKI 123

Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSVETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I  ++       ++ E +++     K++
Sbjct: 124 HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKAD 183

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP +   L+  + P             P L+G +    +
Sbjct: 184 IWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNP-------------PTLEGNY----S 226

Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           + + +    CL KEPS RPT + + +
Sbjct: 227 KPLKEFVEACLNKEPSFRPTAKELLK 252

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 67.4 bits (164), Expect = 1e-12
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 35/262 (13%)

Query: 200 ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER 259
           A+ +K  +  V  + P S  V+ F+ + N + +LQH  L KL   HA    +   +I E 
Sbjct: 25  ATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL---HAVVTKEPIYIITEF 81

Query: 260 LFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID 318
           +  GSL  L + +SD G        +  +   A+G+ F+ +      ++ +   ANI + 
Sbjct: 82  MAKGSL--LDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVS 136

Query: 319 KDFSAKLSGYGCAGHIPETDISNSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLEL 375
                K++ +G A  I + + +    A   +   + E +  G  T KS+VWSFGI+L+E+
Sbjct: 137 ASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEI 196

Query: 376 LT-GRKNLDS-RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALR 433
           +T GR       +P+  R L +  R    ++C       P+            + +I +R
Sbjct: 197 VTYGRIPYPGMSNPEVIRALERGYRMPRPENC-------PE-----------ELYNIMMR 238

Query: 434 CLQKEPSERPT---MRSIFEEL 452
           C +  P ERPT   ++S+ ++ 
Sbjct: 239 CWKNRPEERPTFEYIQSVLDDF 260

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 59/249 (23%), Positives = 106/249 (42%), Gaps = 40/249 (16%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP---- 276
           K+F  +   L + QH N+ K  G       D  ++++E + HG L++ +  RS GP    
Sbjct: 53  KDFEREAELLTNFQHENIVKFYGVCTE--GDPPIMVFEYMEHGDLNKFL--RSHGPDAAF 108

Query: 277 ---------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
                     +  +  ++IA+  A G+ +L  +     ++ + +T N  +  D   K+  
Sbjct: 109 LKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLVVKIGD 165

Query: 328 YGCAGHIPETD---ISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD 383
           +G +  +  TD   +   ++     +  E++     T +S+VWSFG+VL E+ T  K   
Sbjct: 166 FGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPW 225

Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
                EE             +C    I   +L  R P      V DI L C +++P +R 
Sbjct: 226 YGLSNEE-----------VIEC----ITQGRLLQR-PRTCPSEVYDIMLGCWKRDPQQRI 269

Query: 444 TMRSIFEEL 452
            ++ I E L
Sbjct: 270 NIKDIHERL 278

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 68.2 bits (165), Expect = 2e-12
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 25/252 (9%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHP-NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           L   S+ V+ F+ ++  LASL HP N+ KL  F          L+ E +  GSL+ L+  
Sbjct: 34  LESKSKEVERFLREIQILASLNHPPNIVKLYDF--FQDEGSLYLVMEYVDGGSLEDLLKK 91

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYGC 330
                P+  +  + I       L +LH +G    ++ +    NI +D+D    KL  +G 
Sbjct: 92  IGRKGPLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGL 148

Query: 331 AGHIPETDISNSSVAAANLSVETL-----------ERGLLTPKSNVWSFGIVLLELLTGR 379
           A  +P+   ++S  A  + SV T                 +  S++WS GI L ELLTG 
Sbjct: 149 AKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTG- 207

Query: 380 KNLDSRHPKEERNLVKWSRPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKE 438
                  P E       +   L     L    +   L    P   ++  +D+  + L K+
Sbjct: 208 -----LPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKD 262

Query: 439 PSERPTMRSIFE 450
           P  R +  S   
Sbjct: 263 PKNRLSSSSDLS 274

Length = 384

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 57/282 (20%), Positives = 109/282 (38%), Gaps = 53/282 (18%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK----EFINDVNTLASLQHPNL 238
           I E   + +Y+  F +     + F+          +G K       N++  L  +   N+
Sbjct: 28  IKENDQNSIYKGIFNNKEVIIRTFKK-------FHKGHKVLIDITENEIKNLRRIDSNNI 80

Query: 239 CKLLGFH--ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
            K+ GF     D   +  LI E    G L  ++    D   + + T++ +A+   +GL  
Sbjct: 81  LKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEKD---LSFKTKLDMAIDCCKGLYN 137

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER 356
           L++       Y   ++ +  + +++  K+    C G   E  +S+      N  V     
Sbjct: 138 LYKY--TNKPYKNLTSVSFLVTENYKLKI---ICHGL--EKILSSPPFKNVNFMV-YFSY 189

Query: 357 GLL-------TPKSNVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCR 406
            +L       T K +++S G+VL E+ TG+   +NL +   KE  +L+      +  +  
Sbjct: 190 KMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT---KEIYDLI------INKNNS 240

Query: 407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           L L          PL     +  I   C   +  +RP ++ I
Sbjct: 241 LKL----------PLDCPLEIKCIVEACTSHDSIKRPNIKEI 272

Length = 283

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)

Query: 223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY--GRSDGPPIDW 280
           F+ +   +  L H NL +LLG    +G     ++ E +  G+L   +   GR+    I  
Sbjct: 46  FLEETAVMTKLHHKNLVRLLGVILHNG---LYIVMELMSKGNLVNFLRTRGRALVSVIQL 102

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS 340
              ++ +L  A+G+ +L  +   + ++ + +  NI + +D  AK+S +G A  +    + 
Sbjct: 103 ---LQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLA-RVGSMGVD 155

Query: 341 NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP 399
           NS +     + E L+    + KS+VWS+G++L E+ + GR    + +PK     VK    
Sbjct: 156 NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGR----APYPKMSLKEVK---- 207

Query: 400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ 455
              +       M+P      P      V  +   C + EP +RP+   + E+L+++
Sbjct: 208 ---ECVEKGYRMEP------PEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEKE 254

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 55/266 (20%), Positives = 109/266 (40%), Gaps = 33/266 (12%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           I +G   V+++     D       +  ++++N   +  +E I++   LA L    + +  
Sbjct: 8   IGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRRER--EEAIDEARVLAKLDSSYIIRYY 65

Query: 243 GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGP 302
                 G  +  ++ E   +G L +L+  +  G P+  +   +  +    GL  LH +  
Sbjct: 66  ESFLDKG--KLNIVMEYAENGDLHKLLKMQR-GRPLPEDQVWRFFIQILLGLAHLHSK-- 120

Query: 303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI-PETDISNSSVAAAN-LSVETLERGLLT 360
            + ++ +  + N+ +D   + K+   G A  +   T+ +N+ V     LS E  E     
Sbjct: 121 -KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYN 179

Query: 361 PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
            KS+VW+ G+VL E  TG      +HP +  N                      ++G FP
Sbjct: 180 EKSDVWALGVVLYECCTG------KHPFDANNQGALILKI--------------IRGVFP 219

Query: 421 ---LKAARTVADIALRCLQKEPSERP 443
                 ++ +A +  +CL K+  +RP
Sbjct: 220 PVSQMYSQQLAQLIDQCLTKDYRQRP 245

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 32/238 (13%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRS-DGPPID 279
           +F  +V  L  L+H     L+   A     +   +I E +  GSL  L + RS +G  + 
Sbjct: 48  DFQKEVQALKRLRHK---HLISLFAVCSVGEPVYIITELMEKGSL--LAFLRSPEGQVLP 102

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
             + + +A   A+G+ +L E+    +++ + +  NI + +D   K++ +G A  I E D+
Sbjct: 103 VASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKE-DV 158

Query: 340 ---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK 395
              S+  +     + E    G  + KS+VWSFGI+L E+ T G+      +  E  + + 
Sbjct: 159 YLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQI- 217

Query: 396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                     R+     P      P K  + +  I L C   EP +RP+ +++ EELD
Sbjct: 218 ------TAGYRM-----PC-----PAKCPQEIYKIMLECWAAEPEDRPSFKALREELD 259

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 47/258 (18%)

Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY---ERLFHGSLD 266
           V  L P +   + F+ +   +  L+H  L +L   +A     +   IY   E +  GSL 
Sbjct: 35  VKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQL---YAV--CSEEEPIYIVTEYMSKGSL- 88

Query: 267 RLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
            L + +S  G  +     V +A   A+G+ +L        ++ + +  NI + ++   K+
Sbjct: 89  -LDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKI 144

Query: 326 SGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVWSFGIVLLELLT-GRK 380
           + +G A  I E D   +   A       + E    G  T KS+VWSFGI+L E++T GR 
Sbjct: 145 ADFGLARLI-EDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRV 203

Query: 381 NLDSRHPKE-----ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                  +E     ER   +  RP    +C       P+            + D+ L+C 
Sbjct: 204 PYPGMTNREVLEQVERGY-RMPRP---PNC-------PE-----------ELYDLMLQCW 241

Query: 436 QKEPSERPTMRSIFEELD 453
            K+P ERPT   +   L+
Sbjct: 242 DKDPEERPTFEYLQSFLE 259

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 45/293 (15%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRL-NPSSQGVKEFINDVNTLASLQHPNLC 239
           R + EG    ++ A   + + T  K    V  L +P+    K+F  +   L +LQH ++ 
Sbjct: 11  RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIV 70

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-------DGPPIDWNTRV------KI 286
           K  G    DG D  ++++E + HG L++ +           DG P      +       I
Sbjct: 71  KFYGV-CGDG-DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 128

Query: 287 ALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI----SNS 342
           A   A G+ +L  +     ++ + +T N  +  +   K+  +G +  +  TD      ++
Sbjct: 129 ASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHT 185

Query: 343 SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
            +    +  E++     T +S+VWSFG++L E+ T  K                 +P+  
Sbjct: 186 MLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK-----------------QPWF- 227

Query: 403 DDCRLSLIMDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                + +++   +GR    P    + V DI L C Q+EP +R  ++ I++ L
Sbjct: 228 -QLSNTEVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKIL 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 60/247 (24%), Positives = 103/247 (41%), Gaps = 24/247 (9%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
             Q    +  ++N L +L H N+ K  G  +  G     LI E +  GSL   +      
Sbjct: 46  GQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYL------ 99

Query: 276 PPIDWNTRVKIALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
            P       ++ L A Q   G+ +LH +     ++ + +  N+ +D D   K+  +G A 
Sbjct: 100 -PKHKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAK 155

Query: 333 HIPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRH- 386
            +PE         +        +VE L+    +  S+VWSFG+ L ELLT   + DS+  
Sbjct: 156 AVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLT---HCDSKQS 212

Query: 387 -PKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM 445
            PK+   ++   +       RL  +++  ++   P    + V  +   C + E   RPT 
Sbjct: 213 PPKKFEEMIGPKQG-QMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTF 271

Query: 446 RSIFEEL 452
           RS+   L
Sbjct: 272 RSLIPIL 278

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 27/248 (10%)

Query: 202 TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           T K       RL  +    K+ + +++ L     P +    G    +G     +  E + 
Sbjct: 25  TGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNG--DISICMEYMD 82

Query: 262 HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
            GSLD+ I     G  I      KIA+   +GLT+LHE+   + ++ +   +NI ++   
Sbjct: 83  GGSLDK-ILKEVQGR-IPERILGKIAVAVLKGLTYLHEK--HKIIHRDVKPSNILVNSRG 138

Query: 322 SAKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRK 380
             KL  +G +G +    ++ + V  ++ ++ E ++    + KS++WS G+ L+EL TGR 
Sbjct: 139 QIKLCDFGVSGQLVN-SLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRF 197

Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQL-KGRFPLKAARTVADIALRCLQ 436
                           + P       L  I++   P+L  G+F       V      CL 
Sbjct: 198 PYPP-----------ENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVN----LCLI 242

Query: 437 KEPSERPT 444
           K+P ERP+
Sbjct: 243 KDPRERPS 250

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 41/244 (16%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           +F+ + + +    HPN+ +L G   +  S   M+I E + +GSLD+  + R +       
Sbjct: 51  DFLTEASIMGQFDHPNIIRLEGVVTK--SRPVMIITEYMENGSLDK--FLRENDGKFTVG 106

Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISN 341
             V +    A G+ +L E       + + +  NI ++ +   K+S +G +  + +++ + 
Sbjct: 107 QLVGMLRGIASGMKYLSEMNYV---HRDLAARNILVNSNLVCKVSDFGLSRRLEDSE-AT 162

Query: 342 SSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK 395
            +     + +     E +     T  S+VWSFGIV+ E+++ G           ER    
Sbjct: 163 YTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYG-----------ERPYWD 211

Query: 396 WSR----PFLADDCRLSLIMD-PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
            S       + D  RL   MD P             +  + L C QK+ +ERPT   I  
Sbjct: 212 MSNQDVIKAVEDGYRLPPPMDCPS-----------ALYQLMLDCWQKDRNERPTFSQIVS 260

Query: 451 ELDR 454
            LD+
Sbjct: 261 TLDK 264

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 38/196 (19%)

Query: 263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS 322
           GSLDR IY +  G PI      KIA+   +GLT+L+     + M+ +   +NI ++    
Sbjct: 88  GSLDR-IYKK--GGPIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQ 142

Query: 323 AKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKN 381
            KL  +G +G +  + I+++ V  +  +S E ++ G  T KS+VWS GI ++EL  G+  
Sbjct: 143 IKLCDFGVSGELINS-IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGK-- 199

Query: 382 LDSRHPKEERNLVKWSRPFLADDCRLSL--IMD----------PQL-KGRFPLKAARTVA 428
                         ++   + DD +     I+D          P+L    FP      V 
Sbjct: 200 ------------FPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVD 247

Query: 429 DIALRCLQKEPSERPT 444
                CL K+P+ERPT
Sbjct: 248 ----ACLLKDPTERPT 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 32/250 (12%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR----MLIYERLFHGSLDR-LIY 270
           SS  ++EF+ +   +    HPN+ KL+G   R  +  R    M+I   + HG L   L+ 
Sbjct: 41  SSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLM 100

Query: 271 GRSDGPPIDW--NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
            R    P      T V+  +  A G+ +L  +     ++ + +  N  ++++ +  ++ +
Sbjct: 101 SRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADF 157

Query: 329 GCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           G +  I   D       S +    L++E+L   + T  S+VW+FG+ + E++T G+    
Sbjct: 158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYA 217

Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
                E  N                LI   +LK   P      V ++  +C   EP  RP
Sbjct: 218 GVENSEIYNY---------------LIKGNRLKQ--PPDCLEDVYELMCQCWSPEPKCRP 260

Query: 444 TMRSIFEELD 453
           + + + ++L+
Sbjct: 261 SFQHLRDQLE 270

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 62.7 bits (152), Expect = 7e-11
 Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 56/271 (20%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI---- 269
           N SS  +++ +++ N L  + HP++ KL G  ++DG    +LI E   +GSL   +    
Sbjct: 41  NASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP--LLLIVEYAKYGSLRSFLRESR 98

Query: 270 -----YGRSDGP------------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST 312
                Y  SDG              +     +  A   ++G+ +L E    + ++ + + 
Sbjct: 99  KVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLVHRDLAA 155

Query: 313 ANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSF 368
            N+ + +    K+S +G +  + E D     S   +    +++E+L   + T +S+VWSF
Sbjct: 156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSF 215

Query: 369 GIVLLELLT-GRKNLDSRHPKEERNLVK----WSRPFLADDCRLSLIMDPQLKGRFPLKA 423
           G++L E++T G        P+   NL+K      RP   ++C                  
Sbjct: 216 GVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERP---ENC------------------ 254

Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           +  + ++ L C ++EP +RPT   I +EL++
Sbjct: 255 SEEMYNLMLTCWKQEPDKRPTFADISKELEK 285

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 67/285 (23%), Positives = 111/285 (38%), Gaps = 71/285 (24%)

Query: 195 SFGD-----DASTSKKFEATVTRLNPSSQGVKEF-INDVNTLASLQHPNLCKLLGFHARD 248
           SFG        S  K +      L+  S+  +E  +N+V  L  L HPN+ K        
Sbjct: 12  SFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEK 71

Query: 249 GSDQRMLI---Y-ERLFHGSLDRLIY-GRSDGPPID----WNTRVKIALCAAQGLTFLHE 299
           G   ++ I   Y +    G L + I   + +G P       +  V++ L     L +LH 
Sbjct: 72  G---KLCIVMEYADG---GDLSQKIKKQKKEGKPFPEEQILDWFVQLCL----ALKYLHS 121

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS---NSSVAAAN-------- 348
               + ++ +    NI +  +   KL  +G         IS   +S+V  A         
Sbjct: 122 R---KILHRDIKPQNIFLTSNGLVKLGDFG---------ISKVLSSTVDLAKTVVGTPYY 169

Query: 349 LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS 408
           LS E  +      KS++WS G VL EL T +                   PF  ++  L 
Sbjct: 170 LSPELCQNKPYNYKSDIWSLGCVLYELCTLK------------------HPFEGEN--LL 209

Query: 409 LIMDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
            +    LKG++   P + +  + ++    LQK+P ERP++  I +
Sbjct: 210 ELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQ 254

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 61/286 (21%), Positives = 119/286 (41%), Gaps = 31/286 (10%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRL-NPSSQGVKEFINDVNTLASLQHPNLC 239
           + + EG    +       D  +  K      +L   +   ++EF+++   +    HPN+ 
Sbjct: 5   KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVM 64

Query: 240 KLLGFHARDGSDQR----MLIYERLFHGSLDR-LIYGRSDGPP--IDWNTRVKIALCAAQ 292
           KL+G      S Q+    M+I   + HG L   L+Y R  G P  +   T +K  +  A 
Sbjct: 65  KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIAL 124

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---- 348
           G+ +L        ++ + +  N  + +D +  ++ +G +  I   D       A      
Sbjct: 125 GMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKW 181

Query: 349 LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS 408
           +++E+L   + T KS+VW+FG+ + E+ T  +   + +P  E + +     +L    RL 
Sbjct: 182 IAIESLADRVYTSKSDVWAFGVTMWEIATRGQ---TPYPGVENHEI---YDYLRHGNRL- 234

Query: 409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                    + P      + D+   C + +P +RPT   + E L+ 
Sbjct: 235 ---------KQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLEN 271

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 62/279 (22%), Positives = 121/279 (43%), Gaps = 39/279 (13%)

Query: 195 SFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM 254
           +  D+A         V R + S    ++F+ +V  L+ L  PN+ +LLG    D      
Sbjct: 38  AENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVD--PPLC 95

Query: 255 LIYERLFHGSLDRLIYGR--------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           +I E + +G L++ +            +   + ++T + +A   A G+ +L E   F  +
Sbjct: 96  MIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYL-ESLNF--V 152

Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETD---ISNSSVAAAN-LSVETLERGLLTPK 362
           + + +T N  + K+++ K++ +G + ++  +D   +   +      ++ E++  G  T K
Sbjct: 153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTK 212

Query: 363 SNVWSFGIVLLELLTGRKNLDSRHPKEE-------RNLVKWSRPFLADDCRLSLIMDPQL 415
           S+VW+FG+ L E+LT    L    P E         N       F  D  ++ L   P  
Sbjct: 213 SDVWAFGVTLWEILT----LCREQPYEHLTDQQVIENA---GHFFRDDGRQIYLPRPPN- 264

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                    + + ++ L C +++  +RPT R I   L R
Sbjct: 265 -------CPKDIYELMLECWRRDEEDRPTFREIHLFLQR 296

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 54/252 (21%), Positives = 102/252 (40%), Gaps = 32/252 (12%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGR 272
           N S +   EF+N+ + +      ++ +LLG  +       +++ E +  G L   L   R
Sbjct: 47  NASMRERIEFLNEASVMKEFNCHHVVRLLGVVST--GQPTLVVMELMAKGDLKSYLRSRR 104

Query: 273 SD------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
            +        P      +++A   A G+ +L  +   + ++ + +  N  + +D + K+ 
Sbjct: 105 PEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIG 161

Query: 327 GYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNL 382
            +G    I ETD         +    ++ E+L+ G+ T KS+VWSFG+VL E+ T     
Sbjct: 162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMAT----- 216

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
                     L +     L+++  L  ++D       P      + ++   C Q  P  R
Sbjct: 217 ----------LAEQPYQGLSNEEVLKFVIDGGHLDL-PENCPDKLLELMRMCWQYNPKMR 265

Query: 443 PTMRSIFEELDR 454
           PT   I   L  
Sbjct: 266 PTFLEIVSSLKD 277

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI 269
           V R   S +  KE +++   +AS+ HP++ +LLG      S Q  LI + +  G L    
Sbjct: 43  VLREETSPKANKEILDEAYVMASVDHPHVVRLLGICL---SSQVQLITQLMPLGCLLD-- 97

Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
           Y R+    I     +   +  A+G+++L E+     ++ + +  N+ +      K++ +G
Sbjct: 98  YVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFG 154

Query: 330 CAGHIPETDISNSSVAAAN-------LSVETLERGLLTPKSNVWSFGIVLLELLT-GRKN 381
            A  +   D+      A         +++E++   + T KS+VWS+G+ + EL+T G K 
Sbjct: 155 LAKLL---DVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKP 211

Query: 382 LDSRHPKEERNLVK 395
            +     E  +L++
Sbjct: 212 YEGIPAVEIPDLLE 225

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 34/282 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNL 238
           R I +G    +Y  +  D  S  +K    V  LN     + V++F+ +   +    HPN+
Sbjct: 1   RVIGKGHFGCVYHGTLID--SDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNV 58

Query: 239 CKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
             LLG     +GS   +L Y  + HG L   I   +  P +     +   L  A+G+ +L
Sbjct: 59  LSLLGICLPSEGSPLVVLPY--MKHGDLRNFIRSETHNPTV--KDLIGFGLQVAKGMEYL 114

Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI-SNSSVAAANLSV----- 351
             +   + ++ + +  N  +D+ F+ K++ +G A  I + +  S  +   A L V     
Sbjct: 115 ASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMAL 171

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
           E+L+    T KS+VWSFG++L EL+T         P  + +    +  +L    RL    
Sbjct: 172 ESLQTQKFTTKSDVWSFGVLLWELMT-----RGAPPYPDVDSFDITV-YLLQGRRL---- 221

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
             Q     P      + ++ L C   +P  RPT   +   ++
Sbjct: 222 -LQ-----PEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIE 257

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 57/266 (21%), Positives = 112/266 (42%), Gaps = 35/266 (13%)

Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T +     +  L  +   +++   ++  L+    P + +  G + +
Sbjct: 14  KGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLK 73

Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
               +  +I E L  GS LD L  G     P++      I     +GL +LH E   + +
Sbjct: 74  --GTKLWIIMEYLGGGSALDLLKPG-----PLEETYIATILREILKGLDYLHSE---RKI 123

Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSVETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I  ++       ++ E +++     K++
Sbjct: 124 HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKAD 183

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP     L+  + P             P L+G++    +
Sbjct: 184 IWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSP-------------PTLEGQY----S 226

Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           +   +    CL K+P  RPT + + +
Sbjct: 227 KPFKEFVEACLNKDPRFRPTAKELLK 252

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 28/197 (14%)

Query: 263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS 322
           GSLD+L  G      I  +   +I     +GL FL EE     ++ +    N+ ++ +  
Sbjct: 84  GSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQ 141

Query: 323 AKLSGYGCAGH----IPETDIS-NSSVAAANLSVETL-ERGLLTPKSNVWSFGIVLLELL 376
            KL  +G +G+    + +T+I   S +A   +      +    T +S+VWS G+ +LE+ 
Sbjct: 142 VKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMA 201

Query: 377 TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLKGRFPLKAARTVADIALR 433
            GR      +P E      ++  F     +LS I+D   P L    P   +    D   +
Sbjct: 202 LGR----YPYPPE-----TYANIF----AQLSAIVDGDPPTL----PSGYSDDAQDFVAK 244

Query: 434 CLQKEPSERPTMRSIFE 450
           CL K P+ RPT   + E
Sbjct: 245 CLNKIPNRRPTYAQLLE 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 32/242 (13%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG-RSDG----- 275
           EF+N+ + +      ++ +LLG  ++      +++ E + HG L   +   R +      
Sbjct: 55  EFLNEASVMKGFTCHHVVRLLGVVSK--GQPTLVVMELMAHGDLKSYLRSLRPEAENNPG 112

Query: 276 -PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI 334
            PP      +++A   A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I
Sbjct: 113 RPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDI 169

Query: 335 PETDISNSS----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE 390
            ETD         +    ++ E+L+ G+ T  S++WSFG+VL E+ +             
Sbjct: 170 YETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS------------- 216

Query: 391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
             L +     L+++  L  +MD     + P      V D+   C Q  P  RPT   I  
Sbjct: 217 --LAEQPYQGLSNEQVLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPKMRPTFLEIVN 273

Query: 451 EL 452
            L
Sbjct: 274 LL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 60.5 bits (146), Expect = 3e-10
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 35/266 (13%)

Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T +     +  L  +   +++   ++  L+    P + K  G + +
Sbjct: 14  KGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK 73

Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
               +  +I E L  GS LD L  G  D   I   T +K  L   +GL +LH E   + +
Sbjct: 74  --GTKLWIIMEYLGGGSALDLLRAGPFDEFQI--ATMLKEIL---KGLDYLHSE---KKI 123

Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSVETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I  ++       ++ E +++     K++
Sbjct: 124 HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKAD 183

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP     L+  + P             P L G F    +
Sbjct: 184 IWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNP-------------PTLTGEF----S 226

Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           +   +    CL K+PS RPT + + +
Sbjct: 227 KPFKEFIDACLNKDPSFRPTAKELLK 252

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 48/242 (19%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSLDRLI--YGR 272
             + VK+   ++  L+ LQHPN+ + LG   R+     + I+ E +  GSL +L+  YG 
Sbjct: 42  GQEAVKQLEQEIALLSKLQHPNIVQYLG-TEREED--NLYIFLELVPGGSLAKLLKKYGS 98

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
              P I   TR +I L    GL +LH+      ++ +   ANI +D +   KL+ +G A 
Sbjct: 99  FPEPVIRLYTR-QILL----GLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAK 150

Query: 333 HIPETDISNSSVAAAN-LSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE 390
            + E   + S   +   ++ E + + G     +++WS G  +LE+ TG+       P  +
Sbjct: 151 QVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKP------PWSQ 204

Query: 391 RNLVKW--------SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
              V            P + D       +  + K            D  L+CLQ++PS R
Sbjct: 205 LEGVAAVFKIGRSKELPPIPDH------LSDEAK------------DFILKCLQRDPSLR 246

Query: 443 PT 444
           PT
Sbjct: 247 PT 248

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 30/236 (12%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           +FI +   +  L HPNL +L G   +       ++ E + +G L   +  R      +W 
Sbjct: 45  DFIEEAKVMMKLSHPNLVQLYGVCTKQRP--IFIVTEYMANGCLLNYLRERKGKLGTEWL 102

Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISN 341
             +   +C  + + +L   G    ++ + +  N  + +D   K+S +G A ++   D   
Sbjct: 103 LDMCSDVC--EAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYV--LDDQY 155

Query: 342 SSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
           +S       V     E  +    + KS+VWSFG+++ E+ +  K      P E     ++
Sbjct: 156 TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKM-----PYE-----RF 205

Query: 397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           S   + +       +        P  A   V  I   C  ++P +RP  + +  +L
Sbjct: 206 SNSEVVESVSAGYRLYR------PKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 32/245 (13%)

Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY 270
           T  NP  Q  K+ + ++    S + P + K  G    + S    +  E    GSLD  IY
Sbjct: 36  TDPNPDLQ--KQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDS-IY 92

Query: 271 G--RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
              +  G  I      KIA    +GL++LH     + ++ +   +NI + +    KL  +
Sbjct: 93  KKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDF 149

Query: 329 GCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
           G +G +  +     +  +  ++ E ++    +  S+VWS G+ LLE+   R       P+
Sbjct: 150 GVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFP---PE 206

Query: 389 EERNL---------VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP 439
            E  L         V    P L D        +P       +K +    D   +CL+K+P
Sbjct: 207 GEPPLGPIELLSYIVNMPNPELKD--------EPGNG----IKWSEEFKDFIKQCLEKDP 254

Query: 440 SERPT 444
           + RPT
Sbjct: 255 TRRPT 259

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 40/291 (13%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASL 233
           HN    R + EG    ++ A   +      K    V  L  +S    K+F  +   L +L
Sbjct: 5   HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 64

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP------------PIDWN 281
           QH ++ K  G       D  ++++E + HG L++ +  R+ GP             +  +
Sbjct: 65  QHEHIVKFYGVCVE--GDPLIMVFEYMKHGDLNKFL--RAHGPDAVLMAEGNRPAELTQS 120

Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI-- 339
             + IA   A G+ +L  +     ++ + +T N  + ++   K+  +G +  +  TD   
Sbjct: 121 QMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 177

Query: 340 --SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
              ++ +    +  E++     T +S+VWS G+VL E+ T  K               W 
Sbjct: 178 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQ-------------PWY 224

Query: 398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           +  L+++  +  I   ++  R P    + V D+ L C Q+EP  R  ++ I
Sbjct: 225 Q--LSNNEVIECITQGRVLQR-PRTCPKEVYDLMLGCWQREPHMRLNIKEI 272

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 62/276 (22%), Positives = 106/276 (38%), Gaps = 59/276 (21%)

Query: 199 DASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI 256
             S  K     V  L     S  + +F+ +   + SL H NL +L G      +   M++
Sbjct: 17  STSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVL---THPLMMV 73

Query: 257 YERLFHGSL-DRLIYGRSDGPPID-----WNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            E    GSL DRL   R D           +  V+I    A G+ +L  +   + ++ + 
Sbjct: 74  TELAPLGSLLDRL---RKDALGHFLISTLCDYAVQI----ANGMRYLESK---RFIHRDL 123

Query: 311 STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-------ETLERGLLTPKS 363
           +  NI +  D   K+  +G    +P+ +  +  V   +L V       E+L     +  S
Sbjct: 124 AARNILLASDDKVKIGDFGLMRALPQNE--DHYVMEEHLKVPFAWCAPESLRTRTFSHAS 181

Query: 364 NVWSFGIVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
           +VW FG+ L E+ T       G         K ++   +  RP   + C       PQ  
Sbjct: 182 DVWMFGVTLWEMFTYGEEPWAGLSGSQILK-KIDKEGERLERP---EAC-------PQ-- 228

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                     + ++ L+C    P++RPT  ++ E L
Sbjct: 229 ---------DIYNVMLQCWAHNPADRPTFAALREFL 255

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 58/259 (22%), Positives = 115/259 (44%), Gaps = 39/259 (15%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           + + + + + ++++  +  + +H N+  LLG   ++G     ++ E   HG+L   +  R
Sbjct: 53  DATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGP--LYVVVEYAAHGNLRDFLRAR 110

Query: 273 ----------SDGPPIDWNTRVKIALCA---AQGLTFLHEEGPFQAMYNEFSTANIQIDK 319
                        PP +  T+  +   A   A+G+ FL  +   + ++ + +  N+ + +
Sbjct: 111 RPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVTE 167

Query: 320 DFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLEL 375
           D   K++ +G A  I   D     +N  +    ++ E L   + T +S+VWSFG++L E+
Sbjct: 168 DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEI 227

Query: 376 LTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
            T   +     P EE  L K     L +  R    M+       P    + +  +   C 
Sbjct: 228 FTLGGSPYPGIPVEE--LFK----LLKEGYR----MEK------PQNCTQELYHLMRDCW 271

Query: 436 QKEPSERPTMRSIFEELDR 454
            + PS+RPT + + E+LDR
Sbjct: 272 HEVPSQRPTFKQLVEDLDR 290

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 34/237 (14%)

Query: 223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP-IDWN 281
           F+ + + +  L+H NL +LLG    +      ++ E +  GSL  + Y RS G   +  +
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSL--VDYLRSRGRSVLGGD 102

Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISN 341
             +K +L   + + +L E   F  ++ + +  N+ + +D  AK+S +G       T    
Sbjct: 103 CLLKFSLDVCEAMEYL-EANNF--VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-DT 158

Query: 342 SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPF 400
             +     + E L     + KS+VWSFGI+L E+ + GR              V + R  
Sbjct: 159 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR--------------VPYPRIP 204

Query: 401 LADDCRLSLIMDPQLKGRFPLKA----ARTVADIALRCLQKEPSERPTMRSIFEELD 453
           L D       + P+++  + + A       V D+  +C   + + RP+   + E+L+
Sbjct: 205 LKD-------VVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLE 254

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 56.2 bits (135), Expect = 7e-09
 Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 41/258 (15%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L P +  V+ F+ + N + +LQH  L +L     ++  +   +I E +  GSL 
Sbjct: 32  KVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKE--EPIYIITEYMAKGSL- 88

Query: 267 RLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
            L + +SD G  +     +  +   A+G+ ++  +     ++ +   AN+ + +    K+
Sbjct: 89  -LDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKI 144

Query: 326 SGYGCAGHIPETDISNSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLELLT----- 377
           + +G A  I + + +    A   +   + E +  G  T KS+VWSFGI+L E++T     
Sbjct: 145 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIP 204

Query: 378 --GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
             G  N D         L +  R    ++C   L                   DI   C 
Sbjct: 205 YPGMSNSDVM-----SALQRGYRMPRMENCPDELY------------------DIMKTCW 241

Query: 436 QKEPSERPTMRSIFEELD 453
           +++  ERPT   +   LD
Sbjct: 242 KEKAEERPTFDYLQSVLD 259

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 30/250 (12%)

Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI 269
           V R N S +  KE +++   +A +  P +C+LLG      +    L+ + + +G L  L 
Sbjct: 43  VLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICL---TSTVQLVTQLMPYGCL--LD 97

Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
           Y R +   I     +   +  A+G+++L E    + ++ + +  N+ +      K++ +G
Sbjct: 98  YVRENKDRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAARNVLVKSPNHVKITDFG 154

Query: 330 CAG--HIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
            A    I ET+       V    +++E++     T +S+VWS+G+ + EL+T G K  D 
Sbjct: 155 LARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG 214

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
              +E  +L++          RL     PQ     P      V  I ++C   +   RP 
Sbjct: 215 IPAREIPDLLEKGE-------RL-----PQ-----PPICTIDVYMIMVKCWMIDSECRPR 257

Query: 445 MRSIFEELDR 454
            R + +E  R
Sbjct: 258 FRELVDEFSR 267

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 32/271 (11%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 28  IGQGASGTVYTAM---DVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNY 82

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 83  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHSN- 135

Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAAN-LSVETLERGLL 359
             Q ++ +  + NI +  D S KL+ +G CA   PE    ++ V     ++ E + R   
Sbjct: 136 --QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 193

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
            PK ++WS GI+ +E++ G     + +P     L+  +               P+L+   
Sbjct: 194 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG-------------TPELQN-- 238

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           P K +    D   RCL  +  +R + + + +
Sbjct: 239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 51/254 (20%), Positives = 112/254 (44%), Gaps = 26/254 (10%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           R + +     +F+ ++  ++ L++PN+ +LLG    D  D   +I E + +G L++ +  
Sbjct: 53  RADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSD--DPLCMITEYMENGDLNQFLSQ 110

Query: 272 R---------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS 322
           R         ++ P +     + +A+  A G+ +L        ++ + +T N  +   ++
Sbjct: 111 REIESTFTHANNIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYT 167

Query: 323 AKLSGYGCAGHIPETD---ISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTG 378
            K++ +G + ++   D   I   +V     ++ E++  G  T  S+VW+FG+ L E+ T 
Sbjct: 168 IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTL 227

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
            K        +E+ +++ +  F  +  R   +    L           V  + +RC  ++
Sbjct: 228 CKEQPYSLLSDEQ-VIENTGEFFRNQGRQIYLSQTPL-------CPSPVFKLMMRCWSRD 279

Query: 439 PSERPTMRSIFEEL 452
             +RPT   I   L
Sbjct: 280 IKDRPTFNKIHHFL 293

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 58/269 (21%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-- 273
           S+    +F  +   +A   HPN+ KLLG  A        L++E + +G L+  +  RS  
Sbjct: 48  SADMQADFQREAALMAEFDHPNIVKLLGVCAV--GKPMCLLFEYMAYGDLNEFLRHRSPR 105

Query: 274 ---------------DGPPIDWNT--RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ 316
                             P+  +   ++ IA   A G+ +L E    + ++ + +T N  
Sbjct: 106 AQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCL 162

Query: 317 IDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVL 372
           + ++   K++ +G + +I   D      N ++    +  E++     T +S+VW++G+VL
Sbjct: 163 VGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVL 222

Query: 373 LELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR 425
            E+ +       G  + +  +   + N++  S P   D+C L L                
Sbjct: 223 WEIFSYGMQPYYGMAHEEVIYYVRDGNVL--SCP---DNCPLELY--------------- 262

Query: 426 TVADIALRCLQKEPSERPTMRSIFEELDR 454
              ++   C  K PS+RP+  SI   L R
Sbjct: 263 ---NLMRLCWSKLPSDRPSFASINRILQR 288

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 62/246 (25%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           K+ + ++ TL S + P + K  G   ++G     ++ E +  GSL  L+  +  G     
Sbjct: 44  KQLLRELKTLRSCESPYVVKCYGAFYKEGEIS--IVLEYMDGGSLADLL--KKVGK---I 96

Query: 281 NTRV--KIALCAAQGLTFLHEE--------GPFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
              V   IA    +GL +LH +         P          +N+ I+     K++ +G 
Sbjct: 97  PEPVLAYIARQILKGLDYLHTKRHIIHRDIKP----------SNLLINSKGEVKIADFGI 146

Query: 331 AGHIPET-DISNSSVA-AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
           +  +  T D  N+ V     +S E ++    +  +++WS G+ LLE   G      + P 
Sbjct: 147 SKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALG------KFPF 200

Query: 389 EERNLVKW----------SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
                  +            P L  +        P+ +            D    CLQK+
Sbjct: 201 LPPGQPSFFELMQAICDGPPPSLPAEE-----FSPEFR------------DFISACLQKD 243

Query: 439 PSERPT 444
           P +RP+
Sbjct: 244 PKKRPS 249

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 34/272 (12%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 27  IGQGASGTVYTAI---DIATGQ--EVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNY 81

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 82  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALDFLHSN- 134

Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAAN-LSVETLERGLL 359
             Q ++ +  + NI +  D S KL+ +G CA   PE    ++ V     ++ E + R   
Sbjct: 135 --QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 192

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-RPFLADDCRLSLIMDPQLKGR 418
            PK ++WS GI+ +E++ G     + +P     L+  +  P L +  RLS +        
Sbjct: 193 GPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVF------- 245

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                     D   RCL+ +   R + + + +
Sbjct: 246 ---------RDFLNRCLEMDVDRRGSAKELLQ 268

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%)

Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI 269
           V  L P +   K+F+ +   +  L+HP L +L      +  +   ++ E + +GSL  L 
Sbjct: 35  VKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLE--EPIYIVTELMKYGSL--LE 90

Query: 270 Y-GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
           Y     G  +     + +A   A G+ +L  +     ++ + +  N+ + ++   K++ +
Sbjct: 91  YLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADF 147

Query: 329 GCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
           G A  I E DI  +   A    +     E       + KS+VWSFGI+L E++T GR   
Sbjct: 148 GLARVIKE-DIYEAREGA-KFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPY 205

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
                 E   L +  + +     R+     P      P    + + DI L C +++P +R
Sbjct: 206 PGMTNAEV--LQQVDQGY-----RM-----PC-----PPGCPKELYDIMLDCWKEDPDDR 248

Query: 443 PTMRSIFEEL 452
           PT    FE L
Sbjct: 249 PT----FETL 254

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 32/271 (11%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  ++ A    D +T +  E  + ++N   Q  KE I N++  +  L++PN+   
Sbjct: 27  IGQGASGTVFTAI---DVATGQ--EVAIKQINLQKQPKKELIINEILVMKELKNPNIVNF 81

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L        D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 82  LDSFLV--GDELFVVMEYLAGGSLTDVVTETC----MDEAQIAAVCRECLQALEFLHAN- 134

Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAAN-LSVETLERGLL 359
             Q ++ +  + N+ +  D S KL+ +G CA   PE    ++ V     ++ E + R   
Sbjct: 135 --QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 192

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
            PK ++WS GI+ +E++ G     + +P     L+  +               P+L+   
Sbjct: 193 GPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNG-------------TPELQN-- 237

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           P K +    D   RCL+ +  +R + + + +
Sbjct: 238 PEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ 268

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 26/173 (15%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI--YGRSDGPP 277
           VK   +++ TL  L H N+ + LGF      +   +  E +  GS+   +  YGR +   
Sbjct: 52  VKALRSEIETLKDLDHLNIVQYLGFE--TTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQL 109

Query: 278 IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET 337
           + + T   +     +GL +LH +G    ++ +    N+ +D D   K+S +G +     +
Sbjct: 110 VRFFTEQVL-----EGLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISKK---S 158

Query: 338 DISNSSVAAANLS----------VETLERGLLTPKSNVWSFGIVLLELLTGRK 380
           D    +    ++           + +  +G  + K ++WS G V+LE+  GR+
Sbjct: 159 DDIYDNDQNMSMQGSVFWMAPEVIHSYSQGY-SAKVDIWSLGCVVLEMFAGRR 210

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 60/284 (21%), Positives = 125/284 (44%), Gaps = 26/284 (9%)

Query: 182 CISEGLSSVMYRASFGDDASTSKKFEATVT-RLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           C +EG+   M +    D +       A    R + +     +F+ ++  ++ L+ PN+ +
Sbjct: 24  CEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR 83

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIY--------GRSDGPPIDWNTRVKIALCAAQ 292
           LL        D   +I E + +G L++ +          ++D   I ++T + +A   A 
Sbjct: 84  LLAVCITS--DPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIAS 141

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD---ISNSSVAAAN- 348
           G+ +L        ++ + +T N  + K+++ K++ +G + ++   D   I   +V     
Sbjct: 142 GMKYLSS---LNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRW 198

Query: 349 LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS 408
           +S E++  G  T  S+VW+FG+ L E+LT  K        +E+ +++ +  F  D  R  
Sbjct: 199 MSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ-VIENTGEFFRDQGRQV 257

Query: 409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            +  P L          ++  + L C ++   ERP+ + I   L
Sbjct: 258 YLPKPAL-------CPDSLYKLMLSCWRRNAKERPSFQEIHATL 294

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 30/188 (15%)

Query: 285 KIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSV 344
           KI++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++ ++NS V
Sbjct: 103 KISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-MANSFV 159

Query: 345 AAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGR--------KNLDSRHPKEERNLV- 394
              + +S E L+    T +S++WS G+ L+E+  GR        K L++   +       
Sbjct: 160 GTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEA 219

Query: 395 ---KWSRPFLADDCR--------LSLIMD---PQLKGRFPLKAARTVADIALRCLQKEPS 440
                       D          L  I++   P+L        +    D   +CL+K P 
Sbjct: 220 KESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGA---FSDEFQDFVDKCLKKNPK 276

Query: 441 ERPTMRSI 448
           ER  ++ +
Sbjct: 277 ERADLKEL 284

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 29/205 (14%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   +HPN+   
Sbjct: 27  IGQGASGTVYTAI---DVATGQ--EVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNY 81

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAA------QGLT 295
           L  +     D+  ++ E L  GSL  ++            T +     AA      Q L 
Sbjct: 82  LDSYLV--GDELWVVMEYLAGGSLTDVVT----------ETCMDEGQIAAVCRECLQALE 129

Query: 296 FLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAAN-LSVET 353
           FLH     Q ++ +  + NI +  D S KL+ +G CA   PE    ++ V     ++ E 
Sbjct: 130 FLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 186

Query: 354 LERGLLTPKSNVWSFGIVLLELLTG 378
           + R    PK ++WS GI+ +E++ G
Sbjct: 187 VTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 36/246 (14%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL- 265
           +  V  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL 
Sbjct: 32  KVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQL---YAVVSEEPIYIVTEYMSKGSLL 88

Query: 266 DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
           D L  G  +G  +     V +A   A G+ ++        ++ +  +ANI +      K+
Sbjct: 89  DFLKDG--EGRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGDGLVCKI 143

Query: 326 SGYGCAGHIPETDISNSSVAAANLSVETLERGL---LTPKSNVWSFGIVLLELLT-GR-- 379
           + +G A  I + + +    A   +     E  L    T KS+VWSFGI+L EL+T GR  
Sbjct: 144 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 203

Query: 380 -KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
              +++R   E+  + +  R     DC +SL                   ++ L+C +K+
Sbjct: 204 YPGMNNREVLEQ--VERGYRMPCPQDCPISL------------------HELMLQCWKKD 243

Query: 439 PSERPT 444
           P ERPT
Sbjct: 244 PEERPT 249

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 53.5 bits (128), Expect = 5e-08
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 29/236 (12%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           +F+ +   L    HPN+ +L+G   +    Q + I   L  G  D L + R++GP +   
Sbjct: 39  KFLQEARILKQYSHPNIVRLIGVCTQK---QPIYIVMELVQGG-DFLTFLRTEGPRLKVK 94

Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISN 341
             +++   AA G+ +L  +     ++ + +  N  + +    K+S +G +    E  +  
Sbjct: 95  ELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSRE-EEDGVYA 150

Query: 342 SSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
           S+     + V     E L  G  + +S+VWSFGI+L E  +    L +       N  + 
Sbjct: 151 STGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFS----LGAVPYANLSN--QQ 204

Query: 397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           +R  +    RL            P      V  +  RC + +P +RP+  ++ +EL
Sbjct: 205 TREAIEQGVRLPC----------PELCPDAVYRLMERCWEYDPGQRPSFSTVHQEL 250

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 41/258 (15%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S + +++F+ +++ L+  +HPN+  L   +  +     +LI E    G+LD ++     G
Sbjct: 42  SEEELEDFMVEIDILSECKHPNIVGLYEAYFYEN-KLWILI-EFCDGGALDSIMLELERG 99

Query: 276 ---PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
              P I +  R  +     + L FLH     + ++ +    NI +  D   KL+ +G + 
Sbjct: 100 LTEPQIRYVCRQML-----EALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSA 151

Query: 333 HIPETDISNSS-------VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR 385
               T     +       +A   ++ ET +      K+++WS GI L+EL          
Sbjct: 152 KNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL 211

Query: 386 HPKEERNLVKW--SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
           +P   R L+K   S P             P L    P K + +  D    CL K+P +RP
Sbjct: 212 NPM--RVLLKILKSEP-------------PTLDQ--PSKWSSSFNDFLKSCLVKDPDDRP 254

Query: 444 TMRSIFEE--LDRQESRK 459
           T   + +   +  Q   K
Sbjct: 255 TAAELLKHPFVSDQSDNK 272

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 50/253 (19%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG----RSDGP 276
           KEF+ + + +++  HPN+ KLLG      ++ + +I E +  G L   +      R   P
Sbjct: 44  KEFLKEAHLMSNFNHPNIVKLLGVCLL--NEPQYIIMELMEGGDLLSYLRDARVERFGPP 101

Query: 277 PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI-----QIDKDFSAKLSGYGCA 331
            +     + I L  A+G  +L E+  F  ++ + +  N        D D   K+  +G A
Sbjct: 102 LLTLKELLDICLDVAKGCVYL-EQMHF--IHRDLAARNCLVSEKGYDADRVVKIGDFGLA 158

Query: 332 GHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-------GRK 380
             I ++D         +    ++ E+L  G  T +S+VWSFG+++ E+LT          
Sbjct: 159 RDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN 218

Query: 381 NLDS-RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP 439
           N +  +H      L K                        P      +  +   C  ++P
Sbjct: 219 NQEVLQHVTAGGRLQK------------------------PENCPDKIYQLMTNCWAQDP 254

Query: 440 SERPTMRSIFEEL 452
           SERPT   I E L
Sbjct: 255 SERPTFDRIQEIL 267

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 53.5 bits (128), Expect = 8e-08
 Identities = 61/291 (20%), Positives = 113/291 (38%), Gaps = 42/291 (14%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK-EFINDVNTLASLQHPNLCKL 241
           + EG    ++ A   +      K    V  L  +S+  + +F  +   L  LQH ++ + 
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP--------------PIDWNTRVKIA 287
            G    +G    ++++E + HG L+R +  RS GP               +     + IA
Sbjct: 73  YGV-CTEG-RPLLMVFEYMRHGDLNRFL--RSHGPDAKILAGGEDVAPGQLTLGQMLAIA 128

Query: 288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI----SNSS 343
              A G+ +L        ++ + +T N  + +    K+  +G +  I  TD       + 
Sbjct: 129 SQIASGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 185

Query: 344 VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD 403
           +    +  E++     T +S++WSFG+VL E+ T  K               W +  L++
Sbjct: 186 LPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQ-------------PWYQ--LSN 230

Query: 404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
              +  I   +   R P      V  I   C Q+EP +R  ++ I   L  
Sbjct: 231 TEAIECITQGRELER-PRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 37/287 (12%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+   D ST ++    V +++   Q  +E + N+V  +   QHPN+ ++
Sbjct: 27  IGEGSTGIVCIAT---DKSTGRQ--VAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEM 81

Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
              +     D+  ++ E L  G+L D + + R +   I       + L   + L+FLH +
Sbjct: 82  YSSYLVG--DELWVVMEFLEGGALTDIVTHTRMNEEQI-----ATVCLAVLKALSFLHAQ 134

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAAN-LSVETLERGL 358
           G    ++ +  + +I +  D   KLS +G CA    E     S V     ++ E + R  
Sbjct: 135 G---VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLP 191

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
              + ++WS GI+++E++ G     +  P +    ++ + P             P+LK  
Sbjct: 192 YGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLP-------------PKLKN- 237

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTV 465
              K +  +     R L ++P++R T     E L+     K+   + 
Sbjct: 238 -LHKVSPRLRSFLDRMLVRDPAQRATA---AELLNHPFLAKAGPPSS 280

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 51/247 (20%), Positives = 98/247 (39%), Gaps = 36/247 (14%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD- 274
             Q  +E  + +  + SL H  + +LLG           L+ +    GSL   +    D 
Sbjct: 49  GRQTFQEITDHMLAMGSLDHAYIVRLLGICP---GASLQLVTQLSPLGSLLDHVRQHRDS 105

Query: 275 -GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH 333
             P    N  V+IA    +G+ +L E      ++   +  NI +  D   +++ +G A  
Sbjct: 106 LDPQRLLNWCVQIA----KGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADL 158

Query: 334 IPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPK 388
           +   D     S        +++E++  G  T +S+VWS+G+ + E+++ G +      P 
Sbjct: 159 LYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH 218

Query: 389 EERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS 447
           E  +L+ K  R      C + + M                  + ++C   + + RPT + 
Sbjct: 219 EVPDLLEKGERLAQPQICTIDVYM------------------VMVKCWMIDENVRPTFKE 260

Query: 448 IFEELDR 454
           +  E  R
Sbjct: 261 LANEFTR 267

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 65/300 (21%), Positives = 123/300 (41%), Gaps = 50/300 (16%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLC 239
           I EG    + RA    D     K  A +  L    S    ++F  ++  L  L  HPN+ 
Sbjct: 10  IGEGNFGQVIRAMIKKDGL---KMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNII 66

Query: 240 KLLGFHARDGSDQRMLIY---ERLFHGSL------DRLI-----YGRSDGPPIDWNTR-- 283
            LLG       + R  +Y   E   +G+L       R++     + +  G      ++  
Sbjct: 67  NLLG-----ACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQL 121

Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA-GHIPETDISNS 342
           ++ A   A G+ +L E+   Q ++ + +  N+ + ++ ++K++ +G + G       +  
Sbjct: 122 LQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMG 178

Query: 343 SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
            +    +++E+L   + T KS+VWSFG++L E+++                     P+  
Sbjct: 179 RLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVS-----------------LGGTPYCG 221

Query: 403 DDCRLSLIMDPQ-LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR-QESRKS 460
             C       PQ  +   P      V ++  +C +  P ERP    I  +L R  E+RK+
Sbjct: 222 MTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA 281

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 34/245 (13%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
              +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL 
Sbjct: 32  RVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLL 88

Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++
Sbjct: 89  DFLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVA 144

Query: 327 GYGCAGHIPETDISNSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + + +    A   +   + E    G  T KS+VWSFGI+L EL T GR   
Sbjct: 145 DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPY 204

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEP 439
                +E                    ++D   +G R P   +   ++ D+  +C +KEP
Sbjct: 205 PGMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEP 244

Query: 440 SERPT 444
            ERPT
Sbjct: 245 EERPT 249

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 73/285 (25%), Positives = 110/285 (38%), Gaps = 45/285 (15%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKL 241
           I +G    +Y+ +   D S      A V  L+P S   +E   + N L SL  HPN+ K 
Sbjct: 30  IGKGTYGKVYKVTNKKDGS-----LAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKF 84

Query: 242 LG-FHARDG--SDQRMLIYERLFHGSLDRLIYG------RSDGPPIDWNTRVKIALCAAQ 292
            G F+  D     Q  L+ E    GS+  L+ G      R D   I +     I   A  
Sbjct: 85  YGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISY-----ILYGALL 139

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS-NSSV------A 345
           GL  LH     + ++ +    NI +  +   KL  +G +  +  T +  N+SV      A
Sbjct: 140 GLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMA 196

Query: 346 AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
              ++ E         + +VWS GI  +EL  G   L   HP   + L K  R       
Sbjct: 197 PEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV--KTLFKIPR------- 247

Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                 +P      P K  R+      +CL K+   RP++  + E
Sbjct: 248 ------NPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE 286

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 56/252 (22%), Positives = 101/252 (40%), Gaps = 38/252 (15%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           R   S +  + F+ +  TL    H N+ +L G   R   +  M++ E + +G+LD  +  
Sbjct: 42  RAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITR--GNTMMIVTEYMSNGALDSFL-- 97

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
           R     +     + +    A G+ +L E G    ++   +   + ++ D   K+SG+   
Sbjct: 98  RKHEGQLVAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFR-- 152

Query: 332 GHIPE-------TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT--GRKNL 382
             + E       T +S  S      + E ++    +  S+VWSFGIV+ E+++   R   
Sbjct: 153 -RLQEDKSEAIYTTMSGKSPVLWA-APEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYW 210

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
           D       ++++K     + D  RL            P      +  + L C QKE  ER
Sbjct: 211 DMSG----QDVIK----AVEDGFRLPA----------PRNCPNLLHQLMLDCWQKERGER 252

Query: 443 PTMRSIFEELDR 454
           P    I   L +
Sbjct: 253 PRFSQIHSILSK 264

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 38/255 (14%)

Query: 205 KFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR--MLIYERLFH 262
           +++  +  +   S    EFI +   +  L H  L +L G      + QR   ++ E + +
Sbjct: 28  QYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGV----CTKQRPIYIVTEYMSN 83

Query: 263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS 322
           G L  L Y R  G     +  +++     +G+ +L  +   Q ++ + +  N  +D    
Sbjct: 84  GCL--LNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGC 138

Query: 323 AKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT 377
            K+S +G + ++ + D   SSV  +   V     E L     + KS+VW+FG+++ E+ +
Sbjct: 139 VKVSDFGLSRYVLD-DEYTSSV-GSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYS 196

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
             K    R    E          ++   RL     P L       A+  V  I   C  +
Sbjct: 197 LGKMPYERFNNSETVE------KVSQGLRL---YRPHL-------ASEKVYAIMYSCWHE 240

Query: 438 EPSERPTMRSIFEEL 452
           +  ERPT    F++L
Sbjct: 241 KAEERPT----FQQL 251

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 63/282 (22%), Positives = 119/282 (42%), Gaps = 47/282 (16%)

Query: 205 KFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY---E 258
           + +A + R+    S    ++F  ++  L  L  HPN+  LLG       + R  +Y   E
Sbjct: 34  RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-----ACEHRGYLYLAIE 88

Query: 259 RLFHGSL-DRLIYGR------------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQA 305
              HG+L D L   R            S    +     +  A   A+G+ +L ++   Q 
Sbjct: 89  YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QF 145

Query: 306 MYNEFSTANIQIDKDFSAKLSGYGCA-GHIPETDISNSSVAAANLSVETLERGLLTPKSN 364
           ++ + +  NI + +++ AK++ +G + G       +   +    +++E+L   + T  S+
Sbjct: 146 IHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSD 205

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ-LKGRFPLKA 423
           VWS+G++L E+++                     P+    C       PQ  +   PL  
Sbjct: 206 VWSYGVLLWEIVS-----------------LGGTPYCGMTCAELYEKLPQGYRLEKPLNC 248

Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQ-ESRKSSSST 464
              V D+  +C +++P ERP+   I   L+R  E RK+  +T
Sbjct: 249 DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNT 290

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 22/171 (12%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS--DGP--- 276
           EF  +   ++ LQHPN+  LLG   ++      +++E L HG L   +   S        
Sbjct: 54  EFRQEAELMSDLQHPNIVCLLGVCTKE--QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAE 111

Query: 277 --------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
                    +D +  + IA+  A G+ +L        ++ + +  N  + +  + K+S +
Sbjct: 112 SGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDF 168

Query: 329 GCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLEL 375
           G +  I   D     S S +    +  E +  G  T +S++WSFG+VL E+
Sbjct: 169 GLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 42/195 (21%)

Query: 285 KIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSV 344
           KIA+   + L +LH +     ++ +   +N+ I+++   KL  +G +G++   D    ++
Sbjct: 107 KIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGYL--VDSVAKTI 162

Query: 345 AAANLSVETLERGLLTP---------KSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
            A        ER  + P         KS+VWS GI ++EL TG      R P +      
Sbjct: 163 DAGCKPYMAPER--INPELNQKGYDVKSDVWSLGITMIELATG------RFPYD-----S 209

Query: 396 WSRPFLADDCRLSLIMD---PQL-KGRFPLKAARTVADIALRCLQKEPSERPT----MRS 447
           W  PF     +L  +++   PQL   +F  +      D   +CL+K   ERP     ++ 
Sbjct: 210 WKTPFQ----QLKQVVEEPSPQLPAEKFSPE----FQDFVNKCLKKNYKERPNYPELLQH 261

Query: 448 IFEELDRQESRKSSS 462
            F EL   ++   +S
Sbjct: 262 PFFELHLSKNTDVAS 276

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 49/246 (19%), Positives = 107/246 (43%), Gaps = 30/246 (12%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGF----HARDGSDQRMLIYERLFHGSLDR-LIYGRSD 274
           +++F+++   +    HPN+ +L+G        +G    ++I   + HG L   L+Y R  
Sbjct: 44  MEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLG 103

Query: 275 GPPIDWNTR--VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
             P    T+  VK     A G+ +L  +     ++ + +  N  ++++ +  ++ +G + 
Sbjct: 104 DCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGLSK 160

Query: 333 HIPETDISN----SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I   D       + +    +++E+L   + T KS+VWSFG+ + E+ T  +   + +P 
Sbjct: 161 KIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQ---TPYPG 217

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
            E + +     +L    RL          + P      +  +   C    P +RP+  ++
Sbjct: 218 VENSEI---YDYLRQGNRL----------KQPPDCLDGLYSLMSSCWLLNPKDRPSFETL 264

Query: 449 FEELDR 454
             EL++
Sbjct: 265 RCELEK 270

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 32/252 (12%)

Query: 207 EATVTRLNPSSQG--VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGS 264
           + T  R   S Q   V+    ++  +A L HP++ ++LG    D      L  E +  GS
Sbjct: 32  QVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFN--LFVEWMAGGS 89

Query: 265 LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSA 323
           +  L+   S          +       +GL++LHE    Q ++ +   AN+ ID      
Sbjct: 90  VSHLL---SKYGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRL 143

Query: 324 KLSGYGCAGHIPETDISNSSV-------AAANLSVETLERGLLTPKSNVWSFGIVLLELL 376
           +++ +G A  +     + +           A ++ E L         +VWS G V++E+ 
Sbjct: 144 RIADFGAAARL-AAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMA 202

Query: 377 TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
           T          K   N  K S          S    P +    P   +  + D+ LRCL+
Sbjct: 203 TA---------KPPWNAEKHSNHLALIFKIASATTAPSI----PEHLSPGLRDVTLRCLE 249

Query: 437 KEPSERPTMRSI 448
            +P +RP  R +
Sbjct: 250 LQPEDRPPSREL 261

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 20/254 (7%)

Query: 210 VTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DR 267
           V +L  S+ + +++F  ++  L SLQH N+ K  G     G     L+ E L +GSL D 
Sbjct: 38  VKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDY 97

Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
           L   R     +D    +  A    +G+ +L   G  + ++ + +T NI ++ +   K+  
Sbjct: 98  LQKHRER---LDHRKLLLYASQICKGMEYL---GSKRYVHRDLATRNILVESENRVKIGD 151

Query: 328 YGCAGHIPETDISNSSVAAANLSV------ETLERGLLTPKSNVWSFGIVLLELLTGRKN 381
           +G    +P+ D     V     S       E+L     +  S+VWSFG+VL EL T   +
Sbjct: 152 FGLTKVLPQ-DKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT-YSD 209

Query: 382 LDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
                P E   ++   +        L  ++    +   P      +  I   C   +PS+
Sbjct: 210 KSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQ 269

Query: 442 RPTMRSIFEELDRQ 455
           RP+    F EL  Q
Sbjct: 270 RPS----FSELALQ 279

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 36/244 (14%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 55  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 110

Query: 282 T---------RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 111 PVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 167

Query: 333 HIPETDISNSS----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD         +    +S E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 168 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 216

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
               L +     ++++  L  +M+  L  + P      + ++   C Q  P  RP+   I
Sbjct: 217 ----LAEQPYQGMSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 271

Query: 449 FEEL 452
              +
Sbjct: 272 ISSI 275

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 59/264 (22%), Positives = 113/264 (42%), Gaps = 45/264 (17%)

Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 28  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 85

Query: 262 HGSLDRLIY----GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI 317
           +G+L  L Y     R +   +     + +A   +  + +L E+  F  ++ + +  N  +
Sbjct: 86  YGNL--LDYLRECNRQEVNAV---VLLYMATQISSAMEYL-EKKNF--IHRDLAARNCLV 137

Query: 318 DKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVL 372
            ++   K++ +G +  +  T  + ++ A A   +     E+L     + KS+VW+FG++L
Sbjct: 138 GENHLVKVADFGLSRLM--TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLL 195

Query: 373 LELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG---RFPLKAARTVAD 429
            E+ T                     P+   D  LS + +   KG     P      V +
Sbjct: 196 WEIAT-----------------YGMSPYPGID--LSQVYELLEKGYRMERPEGCPPKVYE 236

Query: 430 IALRCLQKEPSERPTMRSIFEELD 453
           +   C Q  PS+RP+   I +  +
Sbjct: 237 LMRACWQWNPSDRPSFAEIHQAFE 260

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 34/240 (14%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD--GPPID 279
           EF+++   +AS+ HP+L +LLG      S    L+ + + HG L   ++   D  G  + 
Sbjct: 55  EFMDEALIMASMDHPHLVRLLGVCL---SPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLL 111

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA----GHIP 335
            N  V+IA    +G+ +L E    + ++ + +  N+ +      K++ +G A    G   
Sbjct: 112 LNWCVQIA----KGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK 164

Query: 336 ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLV 394
           E +     +    +++E +     T +S+VWS+G+ + EL+T G K  D    +E  +L+
Sbjct: 165 EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLL 224

Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           +          RL     PQ     P      V  + ++C   +   RP  + +  E  R
Sbjct: 225 EKGE-------RL-----PQ-----PPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSR 267

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 37/269 (13%)

Query: 188 SSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
            + +YR +  +D S     E  +TRL  S +  ++ +N++  L+ LQHPN+      H  
Sbjct: 15  EATLYRRT--EDDSLVVWKEVNLTRL--SEKERRDALNEIVILSLLQHPNIIAYYN-HFM 69

Query: 248 DGSDQRMLI-YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           D  D  +LI  E    G+L   I  R  G   +    +         ++++H+ G    +
Sbjct: 70  D--DNTLLIEMEYANGGTLYDKI-VRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG---IL 123

Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---LSVETLERGLLTPKS 363
           + +  T NI + K    KL  +G +  I  ++ S +         +S E  +      KS
Sbjct: 124 HRDIKTLNIFLTKAGLIKLGDFGIS-KILGSEYSMAETVVGTPYYMSPELCQGVKYNFKS 182

Query: 364 NVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKA 423
           ++W+ G VL ELLT ++  D+ +P    NLV               I+        P+ +
Sbjct: 183 DIWALGCVLYELLTLKRTFDATNPL---NLV-VK------------IVQ---GNYTPVVS 223

Query: 424 ARTVADIAL--RCLQKEPSERPTMRSIFE 450
             +   I+L    LQ++P +RPT   + +
Sbjct: 224 VYSSELISLVHSLLQQDPEKRPTADEVLD 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 39/260 (15%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           EAT  + N      KE +++   +AS+ +P++C+LLG      +    LI + +  G L 
Sbjct: 46  EATSPKAN------KEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL- 95

Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
            L Y R     I     +   +  A+G+ +L E    + ++ + +  N+ +      K++
Sbjct: 96  -LDYVREHKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKIT 151

Query: 327 GYGCAGHI----PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKN 381
            +G A  +     E       V    +++E++   + T +S+VWS+G+ + EL+T G K 
Sbjct: 152 DFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 211

Query: 382 LDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
            D     E  ++       L    RL     PQ     P      V  I ++C   +   
Sbjct: 212 YDGIPASEISSI-------LEKGERL-----PQ-----PPICTIDVYMIMVKCWMIDADS 254

Query: 442 RPTMRSI---FEELDRQESR 458
           RP  R +   F ++ R   R
Sbjct: 255 RPKFRELIIEFSKMARDPQR 274

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 28/246 (11%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL- 265
           +  +  L P +   + F+ +   +  L+H    KL+  +A    +   ++ E +  GSL 
Sbjct: 32  KVAIKTLKPGTMMPEAFLQEAQIMKKLRHD---KLVPLYAVVSEEPIYIVTEFMGKGSLL 88

Query: 266 DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
           D L  G  DG  +     V +A   A G+ ++        ++ +   ANI +  +   K+
Sbjct: 89  DFLKEG--DGKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKI 143

Query: 326 SGYGCAGHIPETDISNSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLELLTGRKNL 382
           + +G A  I + + +    A   +   + E    G  T KS+VWSFGI+L EL+T     
Sbjct: 144 ADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT----- 198

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
             R P           P + +   L  + +   +   P     ++ ++   C +K+P ER
Sbjct: 199 KGRVP----------YPGMVNREVLEQV-ERGYRMPCPQGCPESLHELMKLCWKKDPDER 247

Query: 443 PTMRSI 448
           PT   I
Sbjct: 248 PTFEYI 253

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 62/260 (23%), Positives = 107/260 (41%), Gaps = 34/260 (13%)

Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T++     V  L  +   +++   ++  L+  + P + K  G   +
Sbjct: 11  KGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLK 70

Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
                  +I E    GS LD L  G      +D      I      GL +LHEEG    +
Sbjct: 71  GSK--LWIIMEYCGGGSCLDLLKPG-----KLDETYIAFILREVLLGLEYLHEEG---KI 120

Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSVETLERGLLTPKSN 364
           + +   ANI + ++   KL+ +G +G +  T    ++       ++ E +++     K++
Sbjct: 121 HRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKAD 180

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G   L   HP     L+  + P             P L+G    K +
Sbjct: 181 IWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNP-------------PSLEGN---KFS 224

Query: 425 RTVADIALRCLQKEPSERPT 444
           +   D    CL K+P ERP+
Sbjct: 225 KPFKDFVSLCLNKDPKERPS 244

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 48/245 (19%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY--ERLFHGSLDRLIYGRSDGPPID 279
           +F+++   L    HPN+ KL+G        QR  IY    L  G  D L + R     + 
Sbjct: 38  KFLSEARILKQYDHPNIVKLIGV-----CTQRQPIYIVMELVPGG-DFLSFLRKKKDELK 91

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
               VK AL AA G+ +L  +     ++ + +  N  + ++   K+S +G +    E D 
Sbjct: 92  TKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQ--EDDG 146

Query: 340 SNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------GRKNLDSRHP 387
             SS     + +     E L  G  + +S+VWS+GI+L E  +       G  N  +R  
Sbjct: 147 IYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQ 206

Query: 388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS 447
            E+               R+S           P K    V  +  RC   +P  RP    
Sbjct: 207 VEK-------------GYRMSC----------PQKCPDDVYKVMQRCWDYKPENRPKFSE 243

Query: 448 IFEEL 452
           + +EL
Sbjct: 244 LQKEL 248

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 53/245 (21%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGF--HARDGSDQRMLIYERLFH-GSLDRLI-YGRSDG 275
           +KE  +++  L  L+HPNL K  G   H      +++ I+      G+L+ L+ +GR   
Sbjct: 43  IKEIADEMKVLELLKHPNLVKYYGVEVH-----REKVYIFMEYCSGGTLEELLEHGRIL- 96

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
              D +      L   +GL +LH  G    ++ +   ANI +D +   KL  +GCA  + 
Sbjct: 97  ---DEHVIRVYTLQLLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVKL- 149

Query: 336 ETDISNSSVA----------AANLSVETLERGLLTPK---SNVWSFGIVLLELLTGRK-- 380
               +N++             A ++ E +  G        +++WS G V+LE+ TG++  
Sbjct: 150 ---KNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPW 206

Query: 381 -NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP 439
             LD+           +   F      +     P +     L+ +    D   RCL+ +P
Sbjct: 207 SELDNE----------FQIMF-----HVGAGHKPPIPD--SLQLSPEGKDFLDRCLESDP 249

Query: 440 SERPT 444
            +RPT
Sbjct: 250 KKRPT 254

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 35/241 (14%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ +   L    HPN+ KL+G   +       ++ E +  GSL  L + R     +  
Sbjct: 37  RKFLQEAEILKQYDHPNIVKLIGVCVQ--KQPIYIVMELVPGGSL--LTFLRKKKNRLTV 92

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC----AGHIPE 336
              ++++L AA G+ +L  +     ++ + +  N  + ++   K+S +G      G I  
Sbjct: 93  KKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYT 149

Query: 337 TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
                  +     + E L  G  T +S+VWS+GI+L E  +     D+ +P         
Sbjct: 150 VSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLG---DTPYP-------GM 199

Query: 397 S----RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           S    R  +    R+     PQL           +  + L+C   +P  RP+   I+ EL
Sbjct: 200 SNQQTRERIESGYRMPA---PQL-------CPEEIYRLMLQCWAYDPENRPSFSEIYNEL 249

Query: 453 D 453
            
Sbjct: 250 Q 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 30/213 (14%)

Query: 183 ISEGLSSVMYRASFGDDASTSKK--FEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           + EG    ++     D+    ++  F  TV   + S   V   + +   L  L H N+  
Sbjct: 14  LQEGTFGRIFYGILIDEKPGKEEEVFVKTVKD-HASEIQVTLLLQESCLLYGLSHQNILP 72

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP---PIDWNTR--VKIALCAAQGLT 295
           +L     DG +   ++Y  +  G+L   +     G    P   +T+  V +A+  A G++
Sbjct: 73  ILHVCIEDG-EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMS 131

Query: 296 FLHEEGPFQAMYNEFSTANIQIDKDFSAKL-----------SGYGCAGHIPETDISNSSV 344
           +LH+ G    ++ + +  N  ID++   K+             Y C G     D  N  V
Sbjct: 132 YLHKRG---VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLG-----DNENRPV 183

Query: 345 AAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
               +++E+L     +  S+VWSFG++L EL+T
Sbjct: 184 KW--MALESLVNKEYSSASDVWSFGVLLWELMT 214

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 57/293 (19%), Positives = 120/293 (40%), Gaps = 49/293 (16%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLC 239
           I EG    + +A    D     + +A + R+    S    ++F  ++  L  L  HPN+ 
Sbjct: 3   IGEGNFGQVLKARIKKDGL---RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 59

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLI--------------YGRSDGPPIDWNTR-- 283
            LLG       + R  +Y  + +     L+              +  ++      +++  
Sbjct: 60  NLLG-----ACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 114

Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA-GHIPETDISNS 342
           +  A   A+G+ +L ++   Q ++ + +  NI + +++ AK++ +G + G       +  
Sbjct: 115 LHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 171

Query: 343 SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
            +    +++E+L   + T  S+VWS+G++L E+++                     P+  
Sbjct: 172 RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS-----------------LGGTPYCG 214

Query: 403 DDCRLSLIMDPQ-LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             C       PQ  +   PL     V D+  +C +++P ERP+   I   L+R
Sbjct: 215 MTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNR 267

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 23/229 (10%)

Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++    +   I      K
Sbjct: 51  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL---KEAKRIPEEILGK 107

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA 345
           +++   +GL +L E+   Q M+ +   +NI ++     KL  +G +G + ++ ++NS V 
Sbjct: 108 VSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-MANSFVG 164

Query: 346 AAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD 404
             + +S E L+    + +S++WS G+ L+EL  GR  +     KE   +  + RP +  +
Sbjct: 165 TRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAI--FGRPVVDGE 222

Query: 405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                 + P+     P    R V+   +         RP M +IFE LD
Sbjct: 223 EGEPHSISPR-----PRPPGRPVSGHGM-------DSRPAM-AIFELLD 258

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 57/273 (20%), Positives = 103/273 (37%), Gaps = 51/273 (18%)

Query: 197 GDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNLCKLLGFHARDGSDQRM 254
            D        E +V      S       F    + ++ L H +L KL G   RD +   +
Sbjct: 20  SDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVRDEN---I 76

Query: 255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTAN 314
           ++ E +  G LD  ++   +   + W   V   L  A  L +L ++   + ++      N
Sbjct: 77  MVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQL--ASALHYLEDK---KLVHGNVCGKN 131

Query: 315 IQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLE-----------RGL---LT 360
           I + +    +       G++P   +S+  +    LS E              R     LT
Sbjct: 132 ILVARYGLNE-------GYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQASLT 184

Query: 361 PKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
             ++ WSFG  LLE+ + G + L +    E+         F  D  RL            
Sbjct: 185 IAADKWSFGTTLLEICSNGEEPLSTLSSSEKER-------FYQDQHRL------------ 225

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           P+     +A++  +C   +P++RP+ R+I  +L
Sbjct: 226 PMPDCAELANLINQCWTYDPTKRPSFRAILRDL 258

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 66/296 (22%), Positives = 123/296 (41%), Gaps = 47/296 (15%)

Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D     +      ++   + + + + + I+++  +  + +H N
Sbjct: 26  LGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 85

Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 86  IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYCYNPTQVPEEQLSFKD 141

Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD---- 338
            V  A   A+G+ +L  +   + ++ + +  N+ + +D   K++ +G A  I   D    
Sbjct: 142 LVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 198

Query: 339 ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
            +N  +    ++ E L   + T +S+VWSFG++L E+ T   +     P EE  L K   
Sbjct: 199 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE--LFK--- 253

Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R    MD       P      +  +   C    PS+RPT + + E+LDR
Sbjct: 254 -LLKEGHR----MDK------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 298

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 67/296 (22%), Positives = 114/296 (38%), Gaps = 59/296 (19%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTS--KK---FEATVTRLNPSSQGVKEFINDVNTL 230
           NF  ++ I +G  SV+Y+A    D      KK   FE         ++  ++ + +++ L
Sbjct: 3   NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMM------DAKARQDCLKEIDLL 56

Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI-YGRSDGPPID----WNTRVK 285
             L HPN+ K L     +  ++  ++ E    G L R+I + +     I     W   V+
Sbjct: 57  KQLDHPNVIKYLASFIEN--NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQ 114

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA 345
           +       L  +H +   + M+ +   AN+ I      KL   G  G       S+ + A
Sbjct: 115 LC----SALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGL-GRF----FSSKTTA 162

Query: 346 AANL-------SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
           A +L       S E +       KS++WS G +L E+      L S              
Sbjct: 163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA----LQS-------------- 204

Query: 399 PFLADDCRLSLIMDPQLKGRF-PLKAARTVA---DIALRCLQKEPSERPTMRSIFE 450
           PF  D   L  +     K  + PL A        D+  RC+  +P +RP +  + +
Sbjct: 205 PFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 27/156 (17%)

Query: 291 AQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-- 348
              L +LH  G    +Y +    NI +D D   KL+ +G A  +       ++       
Sbjct: 103 VLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEY 159

Query: 349 LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS 408
           L+ E L         + WS G++L E+LTG+                   PF A+D    
Sbjct: 160 LAPEVLLGKGYGKAVDWWSLGVLLYEMLTGK------------------PPFYAED--RK 199

Query: 409 LIMDPQLKG--RFPLKAARTVADIALRCLQKEPSER 442
            I +  LK   RFP   +    D+    LQK+P++R
Sbjct: 200 EIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKR 235

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 40/258 (15%)

Query: 201 STSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLCKLLGFH-ARDGSDQRMLIYE 258
           S ++ +      L   SQ  +E  +N++  LAS+ HPN+   + +  A    ++  ++ E
Sbjct: 23  SDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNI---ISYKEAFLDGNKLCIVME 79

Query: 259 RLFHGSLDRLIY-GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI 317
               G L + I   +     I      +I +   +GL  LHE+   + ++ +  +ANI +
Sbjct: 80  YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILL 136

Query: 318 DKDFSAKLSGYGCA----GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLL 373
             +   K+   G +     ++ +T I      A     E  +    + KS++WS G +L 
Sbjct: 137 VANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAP----EVWKGRPYSYKSDIWSLGCLLY 192

Query: 374 ELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVAD---I 430
           E+ T     ++R  ++ R  V+                    +G++P        D    
Sbjct: 193 EMATFAPPFEARSMQDLRYKVQ--------------------RGKYPPIPPIYSQDLQNF 232

Query: 431 ALRCLQKEPSERPTMRSI 448
               LQ +P  RP    I
Sbjct: 233 IRSMLQVKPKLRPNCDKI 250

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 56/256 (21%), Positives = 108/256 (42%), Gaps = 36/256 (14%)

Query: 206 FEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY---ERLFH 262
            +  +  +N  +   ++FI +   +  L HP L +L G        Q+  +Y   E + +
Sbjct: 29  IKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGV-----CTQQKPLYIVTEFMEN 83

Query: 263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS 322
           G L  L Y R     +  +  + +     +G+ +L E   F  ++ + +  N  +     
Sbjct: 84  GCL--LNYLRQRQGKLSKDMLLSMCQDVCEGMEYL-ERNSF--IHRDLAARNCLVSSTGV 138

Query: 323 AKLSGYGCAGHIPETDISNSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLELLTGR 379
            K+S +G   ++ + + ++SS A   +     E       + KS+VWSFG+++ E+ T  
Sbjct: 139 VKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFT-- 196

Query: 380 KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP 439
              + + P E+++  +          RL     P+L       A+ TV ++   C  ++P
Sbjct: 197 ---EGKMPFEKKSNYEVVEMISRGF-RL---YRPKL-------ASMTVYEVMYSCWHEKP 242

Query: 440 SERPTMRSIFEELDRQ 455
             RPT    F EL R 
Sbjct: 243 EGRPT----FAELLRA 254

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 23/180 (12%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-- 273
           + Q   EF  + + +A L HPN+  LLG   ++      +++E L  G L   +  RS  
Sbjct: 47  NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQE--QPVCMLFEYLNQGDLHEFLIMRSPH 104

Query: 274 ---------DG---PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
                    DG     +D    + IA+  A G+ +L        ++ + +  NI I +  
Sbjct: 105 SDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQL 161

Query: 322 SAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
             K+S  G +  I   D       S +    +  E +  G  +  S++WSFG+VL E+ +
Sbjct: 162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%)

Query: 210 VTRLNPSSQG--VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
           V  L P S G  + +   ++  L +L H N+ K  G    DG +   LI E L  GSL  
Sbjct: 38  VKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKE 97

Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
             Y   +   I+   ++K A+   +G+ +L   G  Q ++ + +  N+ ++ +   K+  
Sbjct: 98  --YLPRNKNKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGD 152

Query: 328 YGCAGHIPETDISNSSVAAANLSV------ETLERGLLTPKSNVWSFGIVLLELLT 377
           +G    I ETD    +V     S       E L +      S+VWSFG+ L ELLT
Sbjct: 153 FGLTKAI-ETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 40/239 (16%)

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN-----------T 282
           +H N+  LLG   +DG     ++ E    G+L   +  R   P +D++           T
Sbjct: 76  KHKNIINLLGACTQDGP--LYVLVEYASKGNLREYLRARRP-PGMDYSFDTCKLPEEQLT 132

Query: 283 RVKIALCA---AQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD- 338
              +  CA   A+G+ +L  +   + ++ + +  N+ + +D   K++ +G A  +   D 
Sbjct: 133 FKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDY 189

Query: 339 ---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
               +N  +    ++ E L   + T +S+VWSFG++L E+ T   +     P EE  L K
Sbjct: 190 YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE--LFK 247

Query: 396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                L +  R    MD       P      +  I   C    PS+RPT + + E+LDR
Sbjct: 248 ----LLKEGHR----MDK------PANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDR 292

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 61/270 (22%), Positives = 94/270 (34%), Gaps = 52/270 (19%)

Query: 204 KKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKLLGFHARDGSDQRM-LIYERLF 261
           KKF+      +   + VK+    +V  L  L+H N+  L     R G   R+ L++E + 
Sbjct: 32  KKFKE-----SEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKG---RLYLVFEYVE 83

Query: 262 HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
              L+ L+     G P D        L   Q + + H       ++ +    NI + +  
Sbjct: 84  RTLLE-LLEASPGGLPPDAVRSYIWQLL--QAIAYCHSHN---IIHRDIKPENILVSESG 137

Query: 322 SAKLSGYGCAGHIPETDISN--SSVA-----AANLSVETLERGLLTPKSNVWSFGIVLLE 374
             KL  +G A  +     S     VA     A  L V     G      +VW+ G ++ E
Sbjct: 138 VLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYG---KPVDVWAIGCIMAE 194

Query: 375 LLTGRK-------------------NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ- 414
           LL G                      L   H +        S P  A          P+ 
Sbjct: 195 LLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFS-----SNPRFA-GVAFPEPSQPES 248

Query: 415 LKGRFPLKAARTVADIALRCLQKEPSERPT 444
           L+ R+P K +    D    CL+ +P ER T
Sbjct: 249 LERRYPGKVSSPALDFLKACLRMDPKERLT 278

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 66/261 (25%), Positives = 104/261 (39%), Gaps = 40/261 (15%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLG-FHARD--GSDQRMLIYERLFH 262
           +A V  L+P     +E   + N L +L  HPN+ K  G ++ +D    DQ  L+ E    
Sbjct: 45  KAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNG 104

Query: 263 GSLDRLIYG------RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ 316
           GS+  L+ G      R + P I +     I   A  GL  LH     + ++ +    NI 
Sbjct: 105 GSVTDLVKGFLKRGERMEEPIIAY-----ILHEALMGLQHLHVN---KTIHRDVKGNNIL 156

Query: 317 IDKDFSAKLSGYGCAGHIPETDIS-NSSV------AAANLSVETLERGLLTPKSNVWSFG 369
           +  +   KL  +G +  +  T +  N+SV      A   ++ E         + +VWS G
Sbjct: 157 LTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLG 216

Query: 370 IVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVAD 429
           I  +EL  G   L   HP   R L K  R             +P      P   +    D
Sbjct: 217 ITAIELGDGDPPLADLHPM--RALFKIPR-------------NPPPTLHQPELWSNEFND 261

Query: 430 IALRCLQKEPSERPTMRSIFE 450
              +CL K+  +RPT+  + +
Sbjct: 262 FIRKCLTKDYEKRPTVSDLLQ 282

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 52/247 (21%)

Query: 224 INDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSLDRLI-YGRSDGPPID-- 279
           +++VN L  L+HPN+ +       D S+Q + I  E    G L +LI   + +   I+  
Sbjct: 47  VSEVNILRELKHPNIVRYYD-RIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEE 105

Query: 280 --WNTRVKIAL----C---AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
             W    ++ L    C   +  G T LH +            ANI +D + + KL  +G 
Sbjct: 106 FIWRILTQLLLALYECHNRSDPGNTVLHRD---------LKPANIFLDANNNVKLGDFGL 156

Query: 331 AGHIPETDISNSSVAAAN-------LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD 383
           A       + + S  A         +S E L       KS++WS G ++ EL        
Sbjct: 157 A-----KILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCAL----- 206

Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
              P   RN ++     LA     S I + + + R P + +  + ++    L  +P +RP
Sbjct: 207 -SPPFTARNQLQ-----LA-----SKIKEGKFR-RIPYRYSSELNEVIKSMLNVDPDKRP 254

Query: 444 TMRSIFE 450
           +   + +
Sbjct: 255 STEELLQ 261

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 47.7 bits (113), Expect = 6e-06
 Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 25/229 (10%)

Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++      P        K
Sbjct: 51  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPE---QILGK 107

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA 345
           +++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++ ++NS V 
Sbjct: 108 VSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-MANSFVG 164

Query: 346 AAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD 404
             + +S E L+    + +S++WS G+ L+E+  GR  +     KE   +  +  P   D 
Sbjct: 165 TRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELM--FGCPVEGDP 222

Query: 405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                   P+  GR PL +               P  RP M +IFE LD
Sbjct: 223 AESETSPRPRPPGR-PLSSY-------------GPDSRPPM-AIFELLD 256

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 63/274 (22%), Positives = 109/274 (39%), Gaps = 37/274 (13%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           I  G ++V+Y A        ++K       L      V E   +V  ++   HPN+ K  
Sbjct: 9   IGVGATAVVYAAIC---LPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYY 65

Query: 243 G-FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALC---AAQGLTFLH 298
             F   D   +  L+   L  GSL  ++       P        IA       +GL +LH
Sbjct: 66  TSFVVGD---ELWLVMPYLSGGSLLDIM---KSSYPRGGLDEAIIATVLKEVLKGLEYLH 119

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSV------AAANLSVE 352
             G    ++ +    NI + +D S K++ +G +  + +       V          ++ E
Sbjct: 120 SNG---QIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPE 176

Query: 353 TLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
            +E+      K+++WSFGI  +EL TG     S++P  +  ++                 
Sbjct: 177 VMEQVHGYDFKADIWSFGITAIELATGAAPY-SKYPPMKVLMLTLQNDP----------- 224

Query: 412 DPQLK-GRFPLKAARTVADIALRCLQKEPSERPT 444
            P L+ G    K +++   +   CLQK+PS+RPT
Sbjct: 225 -PSLETGADYKKYSKSFRKMISLCLQKDPSKRPT 257

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 48/242 (19%), Positives = 95/242 (39%), Gaps = 33/242 (13%)

Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG------ 275
           EF  +++    L H N+ +LLG   R+     M I E    G L + +            
Sbjct: 54  EFRRELDMFRKLSHKNVVRLLGL-CREAEPHYM-ILEYTDLGDLKQFLRATKSKDEKLKP 111

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
           PP+    +V +    A G+  L      + ++ + +  N  +      K+S    +  + 
Sbjct: 112 PPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLLSLSKDVY 168

Query: 336 ETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN 392
            ++   + N+ +    L+ E ++    + KS+VWSFG+++ E+ T  +            
Sbjct: 169 NSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGE------------ 216

Query: 393 LVKWSRPF--LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                 PF  L+D+  L+ +   +L+   P      +  +  RC    P +RP+   +  
Sbjct: 217 -----LPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVS 271

Query: 451 EL 452
            L
Sbjct: 272 AL 273

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 32/241 (13%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+  L G   +  S   M++ E + +GSLD  +  + DG     
Sbjct: 50  RDFLSEASIMGQFDHPNIIHLEGVVTK--SKPVMIVTEYMENGSLDAFLR-KHDGQ-FTV 105

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS 340
              V +    A G+ +L + G    ++ + +  NI ++ +   K+S +G +  + +   +
Sbjct: 106 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 162

Query: 341 NSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
             +     + +     E +     T  S+VWS+GIV+ E+++                  
Sbjct: 163 AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS-----------------Y 205

Query: 396 WSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
             RP+  +     +I   +   R   P+     +  + L C QK+ +ERP    I   LD
Sbjct: 206 GERPYW-EMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILD 264

Query: 454 R 454
           +
Sbjct: 265 K 265

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 36/244 (14%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG--PPI 278
           ++F+++ + +    HPN+  L G   +  S   M+I E + +G+LD  +  ++DG    I
Sbjct: 50  RDFLSEASIMGQFDHPNIIHLEGVVTK--SRPVMIITEFMENGALDSFLR-QNDGQFTVI 106

Query: 279 DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-- 336
                V +    A G+ +L E      ++ + +  NI ++ +   K+S +G +  + +  
Sbjct: 107 QL---VGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT 160

Query: 337 TDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE 390
           +D + +S     + +     E +     T  S+VWS+GIV+ E+++ G +       ++ 
Sbjct: 161 SDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDV 220

Query: 391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
            N ++        D RL   MD              +  + L C QK+ + RP    I  
Sbjct: 221 INAIE-------QDYRLPPPMD----------CPTALHQLMLDCWQKDRNARPKFGQIVS 263

Query: 451 ELDR 454
            LD+
Sbjct: 264 TLDK 267

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 44/163 (26%)

Query: 314 NIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV---------------------- 351
           NI +DKD   K++ +G A  +       S+   A                          
Sbjct: 132 NILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSP 191

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL-- 409
           E L        S++W+ G ++ ++LTG+                   PF   +  L+   
Sbjct: 192 ELLNEKPAGKSSDLWALGCIIYQMLTGKP------------------PFRGSNEYLTFQK 233

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           I+  +    FP        D+  + L  +P +R  +   ++EL
Sbjct: 234 ILKLEYS--FPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDEL 274

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 48/255 (18%)

Query: 213 LNPSSQGVK-EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           L+PS + +   F    + ++ + H +L  + G   R GS+  M + E + HG LD  +  
Sbjct: 52  LDPSHRDIALAFFETASLMSQVSHIHLAFVHGVCVR-GSENIM-VEEFVEHGPLDVCLRK 109

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
                P+ W   V   L +A  L++L ++     ++      NI + +       G    
Sbjct: 110 EKGRVPVAWKITVAQQLASA--LSYLEDK---NLVHGNVCAKNILLAR------LGL-AE 157

Query: 332 GHIPETDISNSSVAAANLSVET-LER------------GLLTPKSNVWSFGIVLLEL-LT 377
           G  P   +S+  V+   LS E  +ER              L+  ++ WSFG  LLE+   
Sbjct: 158 GTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFD 217

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
           G   L  R P E+                       + K R P  + + +A +  +CL  
Sbjct: 218 GEVPLKERTPSEKERFY-------------------EKKHRLPEPSCKELATLISQCLTY 258

Query: 438 EPSERPTMRSIFEEL 452
           EP++RP+ R+I  +L
Sbjct: 259 EPTQRPSFRTILRDL 273

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 20/177 (11%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
            P  Q    F+ +V     L HPN+ + LG      S   +L+ E    G L   +    
Sbjct: 35  TPDEQ--LLFLQEVQPYRELNHPNVLQCLGQCIE--SIPYLLVLEFCPLGDLKNYLRSNR 90

Query: 274 DGPPIDWNTRV--KIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
                     V  ++A   A GL +LH+      ++++ +  N Q+  D S K+  YG A
Sbjct: 91  GMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLA 147

Query: 332 -GHIPETDISNSSVAAANLS------VETLERGLL----TPKSNVWSFGIVLLELLT 377
               PE         A  L       VE   + LL    T KSN+WS G+ + EL T
Sbjct: 148 LEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFT 204

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 62/294 (21%), Positives = 120/294 (40%), Gaps = 43/294 (14%)

Query: 183 ISEGLSSVMYRA-SFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    + RA ++G D S   +      ++   N + + + + I+++  +  + +H N
Sbjct: 20  LGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKN 79

Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS--------DGP-----PIDWNTRV 284
           +  LLG   ++G     +I E    G+L   +  R         D        + +   V
Sbjct: 80  IINLLGVCTQEGP--LYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLV 137

Query: 285 KIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD----IS 340
             A   A+G+ +L      + ++ + +  N+ + +D   K++ +G A  + + D     S
Sbjct: 138 SCAYQVARGMEYLESR---RCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTS 194

Query: 341 NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF 400
           N  +    ++ E L   + T +S+VWSFGI++ E+ T   +     P EE  L K  R  
Sbjct: 195 NGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEE--LFKLLREG 252

Query: 401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
              D               P      +  +   C    P++RPT + + E LD+
Sbjct: 253 HRMDK--------------PSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDK 292

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 47/236 (19%)

Query: 225 NDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRV 284
            +++ L   +HPN+    G + R   D+  ++ E    GSL   IY  + GP     + +
Sbjct: 49  QEISMLKECRHPNIVAYFGSYLRR--DKLWIVMEYCGGGSLQD-IYQVTRGPL----SEL 101

Query: 285 KIA-LC--AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS- 340
           +IA +C    +GL +LHE G    ++ +   ANI + +D   KL+ +G +  +  T I+ 
Sbjct: 102 QIAYVCRETLKGLAYLHETG---KIHRDIKGANILLTEDGDVKLADFGVSAQLTAT-IAK 157

Query: 341 -NSSV------AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL 393
             S +      A    +VE   +G    K ++W+ GI  +EL   +  +   HP   R L
Sbjct: 158 RKSFIGTPYWMAPEVAAVE--RKGGYDGKCDIWALGITAIELAELQPPMFDLHPM--RAL 213

Query: 394 VKWSR-----PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
              S+     P L D  + S +    +K                +CL K+P +RPT
Sbjct: 214 FLISKSNFPPPKLKDKEKWSPVFHDFIK----------------KCLTKDPKKRPT 253

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 24/175 (13%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM-LIYERLFHGSLDRLIYGRS---DGP 276
           +EF ++    + LQHPN+  LLG   ++   Q + +I+    H  L   +  RS   D  
Sbjct: 53  EEFKHEAMMRSRLQHPNIVCLLGVVTKE---QPLSMIFSYCSHSDLHEFLVMRSPHSDVG 109

Query: 277 PIDWNTRVKIAL----------CAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             D +  VK  L            A G+ FL        ++ + +T N+ +    + K+S
Sbjct: 110 STDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKIS 166

Query: 327 GYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
             G    +   D    + NS +    +S E +  G  +  S++WS+G+VL E+ +
Sbjct: 167 DLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 59/263 (22%)

Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           E  +++++P  +  +E   +V  L++++HPN+ +       +G+    ++ +    G L 
Sbjct: 32  EINISKMSPKER--EESRKEVAVLSNMKHPNIVQYQESFEENGN--LYIVMDYCEGGDLY 87

Query: 267 RLIYGR-----SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
           + I  +      +   +DW  ++ +AL        LH +           + NI + KD 
Sbjct: 88  KKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRD---------IKSQNIFLTKDG 138

Query: 322 SAKLSGYGCAGHIPETDISNSSVAAAN--------LSVETLERGLLTPKSNVWSFGIVLL 373
           + KL  +G A       + NS+V  A         LS E  E      KS++W+ G VL 
Sbjct: 139 TIKLGDFGIA------RVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLY 192

Query: 374 ELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALR 433
           E+ T +   ++ + K   NLV            L +I     +G +P  ++    D  LR
Sbjct: 193 EMCTLKHAFEAGNMK---NLV------------LKII-----RGSYPPVSSHYSYD--LR 230

Query: 434 CL-----QKEPSERPTMRSIFEE 451
            L     ++ P +RP++ SI E+
Sbjct: 231 NLVSQLFKRNPRDRPSVNSILEK 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 54/262 (20%), Positives = 113/262 (43%), Gaps = 39/262 (14%)

Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI 269
           + R + +     +F+ +V  L+ L+ PN+ +LLG    +  D   +I E + +G L++ +
Sbjct: 53  ILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDE--DPLCMITEYMENGDLNQFL 110

Query: 270 YGR----------------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA 313
                                 P I +++ + +AL  A G+ +L        ++ + +T 
Sbjct: 111 SSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYL---SSLNFVHRDLATR 167

Query: 314 NIQIDKDFSAKLSGYGCAGHIPETD---ISNSSVAAAN-LSVETLERGLLTPKSNVWSFG 369
           N  + ++ + K++ +G + ++   D   I   +V     ++ E +  G  T  S+VW+FG
Sbjct: 168 NCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFG 227

Query: 370 IVLLELLTGRKNLDSRHPKEE---RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAART 426
           + L E+L     L    P  E     +++ +  F  D  R       Q+    P    + 
Sbjct: 228 VTLWEILM----LCKEQPYGELTDEQVIENAGEFFRDQGR-------QVYLFRPPPCPQG 276

Query: 427 VADIALRCLQKEPSERPTMRSI 448
           + ++ L+C  ++  ERP+   I
Sbjct: 277 LYELMLQCWSRDCRERPSFSDI 298

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 42/240 (17%)

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------I 278
           +H N+  LLG   +DG     +I E    G+L    Y R+  PP               +
Sbjct: 79  KHKNIINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDIARVPDEQM 134

Query: 279 DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD 338
            +   V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  +   D
Sbjct: 135 TFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDVNNID 191

Query: 339 ----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                +N  +    ++ E L   + T +S+VWSFG+++ E+ T   +     P EE  L 
Sbjct: 192 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LF 249

Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           K     L +  R    MD       P      +  +   C    PS RPT + + E+LDR
Sbjct: 250 K----LLKEGHR----MDK------PANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDR 295

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 28/173 (16%)

Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           ++  L  LQH N+ + LG  +   +D   +  E +  GS+  L+  YG  +   +     
Sbjct: 56  EIALLKELQHENIVQYLG--SSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLV--RNF 111

Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSS 343
           V+  L   +GL +LH  G    ++ +   ANI +D     K+S +G +  + E +  ++ 
Sbjct: 112 VRQIL---KGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISKKL-EANSLSTK 164

Query: 344 VAAANLSV---------ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
              A  S+         E +++   T K+++WS G +++E+LTG      +HP
Sbjct: 165 TNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTG------KHP 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 59/272 (21%), Positives = 122/272 (44%), Gaps = 34/272 (12%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 28  IGEGSTGIVCIAT----VKSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 82

Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   + L+ LH +
Sbjct: 83  --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLKALSVLHAQ 135

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAAN-LSVETLERGL 358
           G    ++ +  + +I +  D   KLS +G CA    E     S V     ++ E + R  
Sbjct: 136 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLP 192

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
             P+ ++WS GI+++E++ G     +  P +   +++ + P             P+LK  
Sbjct: 193 YGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PKLKNL 239

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
              K + ++     R L ++P++R T   + +
Sbjct: 240 H--KVSPSLKGFLDRLLVRDPAQRATAAELLK 269

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 47/237 (19%)

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
            H N+  LLG     G    ++I E   +G L   +  + +   +     +  +   A+G
Sbjct: 97  NHENIVNLLGACTIGGP--ILVITEYCCYGDLLNFLRRKRESF-LTLEDLLSFSYQVAKG 153

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSS--VAAAN--- 348
           + FL  +     ++ + +  N+ +      K+  +G A      DI N S  V   N   
Sbjct: 154 MAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLA-----RDIMNDSNYVVKGNARL 205

Query: 349 ----LSVETLERGLLTPKSNVWSFGIVLLELLTGRKN------LDSRHPKEERNLVKWSR 398
               ++ E++   + T +S+VWS+GI+L E+ +   N      +DS+  K  +   + ++
Sbjct: 206 PVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQ 265

Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ 455
           P  A                        + DI   C   +P +RPT + I + + +Q
Sbjct: 266 PEHAPA---------------------EIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAANLSV 351
            L +LHE G    +Y +    N+ +D +   KL+ YG C   +   D +++     N   
Sbjct: 108 ALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA 164

Query: 352 ETLERGLLTPKS-NVWSFGIVLLELLTGRKNLD----SRHPKEERNLVKWSRPFLADDCR 406
             + RG     S + W+ G+++ E++ GR   D    S +P +             +D  
Sbjct: 165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQN-----------TEDYL 213

Query: 407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
             +I++ Q+  R P   +   A +    L K+P ER
Sbjct: 214 FQVILEKQI--RIPRSLSVKAASVLKSFLNKDPKER 247

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 27/160 (16%)

Query: 287 ALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVA 345
           A     GL FLHE G    +Y +    N+ +D +   K++ +G C   I     +++   
Sbjct: 102 AAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCG 158

Query: 346 AAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD 404
             + ++ E L      P  + W+ G++L E+L G+                   PF  DD
Sbjct: 159 TPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQS------------------PFEGDD 200

Query: 405 CR--LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
                  I++ ++  R+P   ++    I    L K P +R
Sbjct: 201 EDELFQSILEDEV--RYPRWLSKEAKSILKSFLTKNPEKR 238

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAA 346
           +C A  L FLHE G    +Y +    N+ +D D   KL+ YG C   +   D +++    
Sbjct: 105 ICIA--LNFLHERG---IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGT 159

Query: 347 ANLSVETLERGLLTPKS-NVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
            N     + RG     S + W+ G+++ E++ GR   D      + N          +D 
Sbjct: 160 PNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMN---------TEDY 210

Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
              +I++  +  R P   +   + +    L K+P ER
Sbjct: 211 LFQVILEKPI--RIPRFLSVKASHVLKGFLNKDPKER 245

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 67/310 (21%), Positives = 119/310 (38%), Gaps = 48/310 (15%)

Query: 151 PLPLPPTGTGTLRNFPLDEVAAACHN--FFSD----RCISEGLSSVMYRASFGDDASTSK 204
           PLPLPP  + +  +       +A       S+      I  G    +Y+        T +
Sbjct: 44  PLPLPPPSSSSSSSSSSSASGSAPSAAKSLSELERVNRIGSGAGGTVYKVI---HRPTGR 100

Query: 205 KFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGS 264
            +   V   N      ++   ++  L  + HPN+ K       +G  Q +L  E +  GS
Sbjct: 101 LYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLL--EFMDGGS 158

Query: 265 LDRLIYGRSDGPPIDWNTRVKIALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
           L+        G  I       +A  A Q   G+ +LH       ++ +   +N+ I+   
Sbjct: 159 LE--------GTHI--ADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAK 205

Query: 322 SAKLSGYGCAGHIPET-DISNSSVAA-ANLSVETLERGLLTPK-----SNVWSFGIVLLE 374
           + K++ +G +  + +T D  NSSV   A +S E +   L          ++WS G+ +LE
Sbjct: 206 NVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILE 265

Query: 375 LLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRC 434
              GR         +  +L+          C + +   P+     P  A+R        C
Sbjct: 266 FYLGRFPFGVGRQGDWASLM----------CAICMSQPPEA----PATASREFRHFISCC 311

Query: 435 LQKEPSERPT 444
           LQ+EP++R +
Sbjct: 312 LQREPAKRWS 321

Length = 353

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 37/191 (19%)

Query: 263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS 322
           GSLD  +Y +     +      +IA+   +GLT+L      + ++ +   +N+ ++    
Sbjct: 84  GSLD--VYRKIPEHVLG-----RIAVAVVKGLTYLWS---LKILHRDVKPSNMLVNTRGQ 133

Query: 323 AKLSGYGCAGH----IPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
            KL  +G +      I +T + +N+ +A   +S E  + G+    S+VWS GI  +EL  
Sbjct: 134 VKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGE--QYGIH---SDVWSLGISFMELAL 188

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLK-GRFPLKAARTVADIALR 433
           GR      +P+ ++N     +  L     L  I+D   P L  G+F    +        +
Sbjct: 189 GR----FPYPQIQKN-----QGSLMPLQLLQCIVDEDPPVLPVGQF----SEKFVHFITQ 235

Query: 434 CLQKEPSERPT 444
           C++K+P ERP 
Sbjct: 236 CMRKQPKERPA 246

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 47/236 (19%), Positives = 100/236 (42%), Gaps = 28/236 (11%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++FI +   +  L HP L +L G           L++E + HG L    Y R+       
Sbjct: 44  EDFIEEAQVMMKLSHPKLVQLYGVCTERSP--ICLVFEFMEHGCLSD--YLRAQRGKFSQ 99

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS 340
            T + + L   +G+ +L        ++ + +  N  + ++   K+S +G    + +   +
Sbjct: 100 ETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYT 156

Query: 341 NSSVAAANL---SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
           +S+     +   S E       + KS+VWSFG+++ E+ +     + + P E R     S
Sbjct: 157 SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFS-----EGKTPYENR-----S 206

Query: 398 RPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              + +       +  P+L       A+++V ++   C ++ P +RP+   +  +L
Sbjct: 207 NSEVVETINAGFRLYKPRL-------ASQSVYELMQHCWKERPEDRPSFSLLLHQL 255

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 45/280 (16%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           I EG S  +Y+A+   D +T K+      RL    Q  +  IN++  +   +HPN+    
Sbjct: 27  IGEGASGEVYKAT---DRATGKEVAIKKMRLR--KQNKELIINEILIMKDCKHPNIVDYY 81

Query: 243 GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAA--QGLTFLHEE 300
             +   G +  +++ E +  GSL  +I        +  N      +C    QGL +LH  
Sbjct: 82  DSY-LVGDELWVVM-EYMDGGSLTDIITQN----FVRMNEPQIAYVCREVLQGLEYLHS- 134

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI-PETDISNSSVA-AANLSVETLERGL 358
                ++ +  + NI + KD S KL+ +G A  +  E    NS V     ++ E ++R  
Sbjct: 135 --QNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKD 192

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
             PK ++WS GI+ +E+  G    +  + +E         P  A    L LI     KG 
Sbjct: 193 YGPKVDIWSLGIMCIEMAEG----EPPYLRE--------PPLRA----LFLITT---KGI 233

Query: 419 FPLKAARTVADIAL----RCLQKEPSERPTMRSIFEELDR 454
            PLK     +        +CL K+P +RP+     EEL +
Sbjct: 234 PPLKNPEKWSPEFKDFLNKCLVKDPEKRPS----AEELLQ 269

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 44/269 (16%)

Query: 198 DDASTSKKFEATVTRLNPSSQGVK-EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI 256
           D  S  K+ +  +  L+PS + +   F    + +  + H ++  L G   RD   + +++
Sbjct: 25  DGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRD--VENIMV 82

Query: 257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI- 315
            E +  G LD  ++ +SD     W  + K+A   A  L++L ++     ++    T NI 
Sbjct: 83  EEFVEFGPLDLFMHRKSDVLTTPW--KFKVAKQLASALSYLEDK---DLVHGNVCTKNIL 137

Query: 316 ----QIDKDFSA--KLSGYGCAGHIPETDISNSSVAA-----ANLSVETLERGLLTPKSN 364
                ID +     KLS  G    IP T +S           A   VE  +   L+  ++
Sbjct: 138 LAREGIDGECGPFIKLSDPG----IPITVLSRQECVERIPWIAPECVE--DSKNLSIAAD 191

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
            WSFG  L E+       +   P +++ L +  R F    C L   + P  K        
Sbjct: 192 KWSFGTTLWEIC-----YNGEIPLKDKTLAEKER-FYEGQCML---VTPSCK-------- 234

Query: 425 RTVADIALRCLQKEPSERPTMRSIFEELD 453
             +AD+   C+  +P++RP  R+I  +++
Sbjct: 235 -ELADLMTHCMNYDPNQRPFFRAIMRDIN 262

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 292 QGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANL-- 349
           +GL +LH     + ++ +    NI ++++  AKL+ +G +G + +T    ++V       
Sbjct: 110 KGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWM 166

Query: 350 SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL 409
           + E ++      K+++WS GI  +E+  G+      HP     ++    P          
Sbjct: 167 APEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPP---------- 216

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
              P L    P K +    D   +CL K+P ERP+
Sbjct: 217 ---PTLSD--PEKWSPEFNDFVKKCLVKDPEERPS 246

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 64/289 (22%), Positives = 111/289 (38%), Gaps = 35/289 (12%)

Query: 177 FFSD-RCISEGLSSVMYRASFGDDASTSK--KFEATVTRLNPSSQGVKEFINDVNTLASL 233
            F+D R I  G    +Y   F  D  T++    +        S++  ++ I +V  L  +
Sbjct: 26  LFTDLREIGHGSFGAVY---FARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI 82

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
           +HPN  +  G + R+ +    L+ E     + D L   +    P+       I   A QG
Sbjct: 83  KHPNSIEYKGCYLREHT--AWLVMEYCLGSASDLLEVHKK---PLQEVEIAAITHGALQG 137

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI-PETDISNSSVAAANLSVE 352
           L +LH       ++ +    NI + +    KL+ +G A    P      +    A   + 
Sbjct: 138 LAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVIL 194

Query: 353 TLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD 412
            ++ G    K +VWS GI  +EL              ER    ++   ++    ++    
Sbjct: 195 AMDEGQYDGKVDVWSLGITCIEL-------------AERKPPLFNMNAMSALYHIAQNES 241

Query: 413 PQLKGRFPLKAARTVADIALRCLQKEPSERPT----MRSIFEELDRQES 457
           P L+        R   D    CLQK P +RPT    ++ +F   +R E+
Sbjct: 242 PTLQSNEWSDYFRNFVD---SCLQKIPQDRPTSEELLKHMFVLRERPET 287

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 40/192 (20%)

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAANLSV 351
           GL FLH +G    +Y +    NI +D D   K++ +G C  ++     + +     +   
Sbjct: 108 GLQFLHSKG---IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIA 164

Query: 352 ETLERGLLTPKSNV----WSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL 407
             +   LL  K N     WSFG++L E+L G+      H  +E  L +            
Sbjct: 165 PEI---LLGQKYNTSVDWWSFGVLLYEMLIGQSPF---HGHDEEELFQ------------ 206

Query: 408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER----------PTMRSI-FEELDRQE 456
           S+ MD     R+  + A+   DI ++   +EP  R          P  R I +  L+ +E
Sbjct: 207 SIRMDNPCYPRWLTREAK---DILVKLFVREPERRLGVKGDIRQHPFFREIDWSALEERE 263

Query: 457 SRKSSSSTVRRA 468
                   V+ A
Sbjct: 264 IEPPFKPKVKSA 275

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 285 KIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI-SNSS 343
           K+ +   + L +L E+     ++ +   +NI +D   + KL  +G +G + ++   + S+
Sbjct: 118 KMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSA 175

Query: 344 VAAANLSVETLERGLLTPK----SNVWSFGIVLLELLTGR 379
             AA ++ E ++     PK    ++VWS GI L+EL TG+
Sbjct: 176 GCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQ 215

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSV 351
           GL  LH E     +Y +    NI +D     ++S  G A  IPE +     V     ++ 
Sbjct: 114 GLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAP 170

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK---------WSRPFLA 402
           E L     T   + W  G ++ E++ G+     R  K +R  V          +S  F  
Sbjct: 171 EVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSE 230

Query: 403 DD---CRLSLIMDPQ 414
           +    C++ L  DP+
Sbjct: 231 EAKSICKMLLTKDPK 245

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 56/204 (27%)

Query: 264 SLD---RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           SLD   + +Y       I      KIA+   + L +L EE   + ++ +   +NI +D++
Sbjct: 88  SLDKFYKYVYEVLKSV-IPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRN 144

Query: 321 FSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL--------LTP--------KSN 364
            + KL  +G +G + +      S+A      +T + G         + P        +S+
Sbjct: 145 GNIKLCDFGISGQLVD------SIA------KTRDAGCRPYMAPERIDPSARDGYDVRSD 192

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL-----IMDPQLKGRF 419
           VWS GI L E+ TG+               KW+  F  D     +     I+    +  F
Sbjct: 193 VWSLGITLYEVATGKFPYP-----------KWNSVF--DQLTQVVKGDPPILSNSEEREF 239

Query: 420 PLKAARTVADIALRCLQKEPSERP 443
              +   V  I L CL K+ S+RP
Sbjct: 240 ---SPSFVNFINL-CLIKDESKRP 259

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSV 351
           GL  LH+E   + +Y +    NI +D     ++S  G A H+PE       V     ++ 
Sbjct: 114 GLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAP 170

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN----LVK-----WSRPFLA 402
           E ++    T   + W+ G +L E++ G+     R  K +R     LVK     +S  F  
Sbjct: 171 EVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSP 230

Query: 403 DD---CRLSLIMDP 413
           D    C++ L  DP
Sbjct: 231 DARSLCKMLLCKDP 244

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 21/157 (13%)

Query: 290 AAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAA 346
           AAQ   GL  LH+      +Y +    N+ +D   + ++S  G A  +            
Sbjct: 101 AAQIICGLEHLHQRR---IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGT 157

Query: 347 AN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
              ++ E L+  +     + ++ G  L E++ GR     R  K E+  +K          
Sbjct: 158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELK---------- 207

Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
           R +L M  +   +F    A+   D+    LQK+P +R
Sbjct: 208 RRTLEMAVEYPDKFS-PEAK---DLCEALLQKDPEKR 240

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP 277
            G KEF+ + + +A L HP + +L+G       +  ML+ E    G L + +  R + P 
Sbjct: 38  AGKKEFLREASVMAQLDHPCIVRLIGVCK---GEPLMLVMELAPLGPLLKYLKKRREIPV 94

Query: 278 ID---WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI 334
            D      +V      A G+ +L E   F  ++ + +  N+ +     AK+S +G +  +
Sbjct: 95  SDLKELAHQV------AMGMAYL-ESKHF--VHRDLAARNVLLVNRHQAKISDFGMSRAL 145

Query: 335 PETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT 377
                   +  A    +     E +  G  + KS+VWS+G+ L E  +
Sbjct: 146 GAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFS 193

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 44/200 (22%)

Query: 271 GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
              D  P+D +  ++ +   AQG+ FL  +     ++ + +  N+ +     AK+  +G 
Sbjct: 202 DTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGL 258

Query: 331 AGHIPETDISNSS--VAAAN-------LSVETLERGLLTPKSNVWSFGIVLLELLTGRKN 381
           A      DI N S  V   N       ++ E++   + T +S+VWS+GI+L E+ +  K+
Sbjct: 259 A-----RDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKS 313

Query: 382 ------LDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                 ++S+  K  +   + SRP  A                 P +       I   C 
Sbjct: 314 PYPGILVNSKFYKMVKRGYQMSRPDFA-----------------PPEIYS----IMKMCW 352

Query: 436 QKEPSERPTMRSIFEELDRQ 455
             EP+ERPT   I + + RQ
Sbjct: 353 NLEPTERPTFSQISQLIQRQ 372

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 29/239 (12%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++ I +V  L  L+HPN  +  G + ++ +    L+ E     + D L   +    P+  
Sbjct: 66  QDIIKEVKFLQQLKHPNTIEYKGCYLKEHT--AWLVMEYCLGSASDLLEVHKK---PLQE 120

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI-PETDI 339
                I   A QGL +LH       ++ +    NI + +    KL+ +G A    P    
Sbjct: 121 VEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSF 177

Query: 340 SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP 399
             +    A   +  ++ G    K +VWS GI  +EL              ER    ++  
Sbjct: 178 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-------------AERKPPLFNMN 224

Query: 400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT----MRSIFEELDR 454
            ++    ++    P L+      + R   D    CLQK P ERP     +R  F   DR
Sbjct: 225 AMSALYHIAQNDSPTLQSNEWTDSFRGFVDY---CLQKIPQERPASAELLRHDFVRRDR 280

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 292 QGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--L 349
           Q L +LH +G    ++ +  + +I +  D   KLS +G    I +      S+      +
Sbjct: 128 QALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWM 184

Query: 350 SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL 409
           + E + R     + ++WS GI+++E++ G     S  P +    ++ S P          
Sbjct: 185 APEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPP---------- 234

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
              P+LK     K +  + D   R L +EP ER T + + +
Sbjct: 235 ---PKLKNAH--KISPVLRDFLERMLTREPQERATAQELLD 270

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 187 LSSVMYRASFGD-----DASTSKKFEATVTRLNPSSQGVKEFIN----DVNTLASLQHPN 237
           L  ++ R +FG+     DA T ++        +P SQ   + +N    ++  L +L+H  
Sbjct: 6   LGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDR 65

Query: 238 LCKLLGFHARDGSDQRMLIY-ERLFHGSL-DRL-IYGRSDGPPIDWNTRVKIALCAAQGL 294
           + +  G   RD  ++++ I+ E +  GS+ D+L  YG      +  N   +      QG+
Sbjct: 66  IVQYYGC-LRDPEEKKLSIFVEYMPGGSIKDQLKAYG-----ALTENVTRRYTRQILQGV 119

Query: 295 TFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-----L 349
           ++LH       ++ +   ANI  D   + KL  +G +  I    +S + + +       +
Sbjct: 120 SYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWM 176

Query: 350 SVETLERGLLTPKSNVWSFGIVLLELLT 377
           S E +       K++VWS    ++E+LT
Sbjct: 177 SPEVISGEGYGRKADVWSVACTVVEMLT 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (10%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S++  ++ I +V  L  L+HPN  +  G + R+ +    L+ E     + D L   +   
Sbjct: 55  SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT--AWLVMEYCLGSASDLLEVHKK-- 110

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
            P+       +   A QGL +LH       ++ +    NI + +    KL  +G A  + 
Sbjct: 111 -PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA 166

Query: 335 PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
           P      +    A   +  ++ G    K +VWS GI  +EL              ER   
Sbjct: 167 PANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL-------------AERKPP 213

Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
            ++   ++    ++    P L+     +  R   D    CLQK P +RPT
Sbjct: 214 LFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVD---SCLQKIPQDRPT 260

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 50/248 (20%)

Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRM-LIYERLFHGSLDRLIYGRSDGPP--IDWNT 282
           ++  L  L+H NL  L+    R    +R+ L++E + H  LD L     +  P  +D + 
Sbjct: 50  EIRMLKQLRHENLVNLIEVFRRK---KRLYLVFEFVDHTVLDDL-----EKYPNGLDESR 101

Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-DISN 341
             K      +G+ F H       ++ +    NI + +    KL  +G A  +    ++  
Sbjct: 102 VRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYT 158

Query: 342 SSVA-----AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRK---------------- 380
             VA     A  L V   + G      ++W+ G ++ E+LTG                  
Sbjct: 159 DYVATRWYRAPELLVGDTKYG---RAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIK 215

Query: 381 ---NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ-LKGRFPLKAARTVADIALRCLQ 436
              NL  RH    + + + +  F     RL  + + + L+ RFP K +  V D+A +CL+
Sbjct: 216 CLGNLIPRH----QEIFQKNPLFAG--MRLPEVKEIEPLEKRFP-KLSGLVLDLAKQCLR 268

Query: 437 KEPSERPT 444
            +P +RP+
Sbjct: 269 IDPDDRPS 276

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 22/155 (14%)

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDISNSSVAAANLSVE 352
           L FLHE G    +Y +    N+ +D +   KL+ YG C   I   D +++     N    
Sbjct: 109 LNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAP 165

Query: 353 TLERGLLTPKS-NVWSFGIVLLELLTGRKNLD----SRHPKEERNLVKWSRPFLADDCRL 407
            + RG     S + W+ G+++ E++ GR   D    S +P +             +D   
Sbjct: 166 EILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQN-----------TEDYLF 214

Query: 408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
            +I++ Q+  R P   +   + +    L K+P ER
Sbjct: 215 QVILEKQI--RIPRSLSVKASSVLKGFLNKDPKER 247

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 47/241 (19%), Positives = 102/241 (42%), Gaps = 32/241 (13%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    H N+ +L G   +      M+I E + +G+LD+  Y R        
Sbjct: 51  QDFLSEASIMGQFSHHNIIRLEGVVTK--FKPAMIITEYMENGALDK--YLRDHDGEFSS 106

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS 340
              V +    A G+ +L +      ++ + +  NI ++ +   K+S +G +  + +    
Sbjct: 107 YQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEG 163

Query: 341 NSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
             + +   + +     E +     T  S+VWSFGIV+ E+++  +               
Sbjct: 164 TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGE--------------- 208

Query: 396 WSRPF--LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
             RP+  +++   +  I D   +   P+     V  + L+C Q++ + RP    I   LD
Sbjct: 209 --RPYWDMSNHEVMKAIND-GFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLD 265

Query: 454 R 454
           +
Sbjct: 266 K 266

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 39/178 (21%)

Query: 236 PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP-PIDW--NTRVKIALCAAQ 292
           P + KL  +++    D   L+ E L  G    LI  ++ G  P DW      ++ L    
Sbjct: 57  PYVAKL--YYSFQSKDYLYLVMEYLNGGDCASLI--KTLGGLPEDWAKQYIAEVVLG--- 109

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---- 348
            +  LH+ G    ++ +    N+ ID+            GH+  TD   S     N    
Sbjct: 110 -VEDLHQRG---IIHRDIKPENLLIDQ-----------TGHLKLTDFGLSRNGLENKKFV 154

Query: 349 -----LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-----ERNLVKW 396
                L+ ET+        S+ WS G V+ E L G     +  P           + W
Sbjct: 155 GTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINW 212

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 23/152 (15%)

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHI-PETDISNSSVAAANLS 350
           GL FLH +G    +Y +    N+ +D+D   K++ +G C  ++  +   S        ++
Sbjct: 108 GLQFLHSKG---IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIA 164

Query: 351 VETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI 410
            E L+    T   + WSFG++L E+L G+      H  +E  L +            S+ 
Sbjct: 165 PEILQGLKYTFSVDWWSFGVLLYEMLIGQSPF---HGDDEDELFE------------SIR 209

Query: 411 MDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
           +D     R+  K ++   DI  +  +++P+ R
Sbjct: 210 VDTPHYPRWITKESK---DILEKLFERDPTRR 238

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 38/252 (15%)

Query: 215 PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD---RLIYG 271
            S Q   +F+ +   ++   H N+ +L+G         R ++ E +  G L    R    
Sbjct: 48  CSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE--RLPRFILLELMAGGDLKSFLRENRP 105

Query: 272 RSDGP-PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKLSG 327
           R + P  +     +  A   A+G  +L E      ++ + +  N  +        AK++ 
Sbjct: 106 RPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIAD 162

Query: 328 YGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKN 381
           +G A  I            A L +     E    G+ T K++VWSFG++L E+ + G   
Sbjct: 163 FGMARDIYRASYYRKG-GRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMP 221

Query: 382 LDSRHPKEERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
              R  +E    V    R            +DP      P      V  I   C Q  P 
Sbjct: 222 YPGRTNQEVMEFVTGGGR------------LDP------PKGCPGPVYRIMTDCWQHTPE 263

Query: 441 ERPTMRSIFEEL 452
           +RP   +I E +
Sbjct: 264 DRPNFATILERI 275

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.98
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.97
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.97
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.97
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.97
KOG1152	772	consensus Signal transduction serine/threonine kin	99.96
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.96
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.96
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.95
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.94
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.93
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.92
PRK09188	365	serine/threonine protein kinase; Provisional	99.91
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.91
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.9
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.89
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.85
PRK12274	218	serine/threonine protein kinase; Provisional	99.85
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.85
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.84
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.84
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.83
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.83
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.82
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.81
PRK10345	210	hypothetical protein; Provisional	99.79
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.79
PRK14879	211	serine/threonine protein kinase; Provisional	99.77
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.75
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.74
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.72
smart00090	237	RIO RIO-like kinase.	99.71
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.69
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.63
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.61
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.58
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.57
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.47
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.46
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.37
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.32
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.31
KOG1243	690	consensus Protein kinase [General function predict	99.28
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.24
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.2
KOG3087	229	consensus Serine/threonine protein kinase [General	99.16
COG4248	637	Uncharacterized protein with protein kinase and he	99.16
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.15
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.14
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.12
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.91
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.82
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.81
PRK09902	216	hypothetical protein; Provisional	98.76
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.74
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.59
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.53
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.33
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.3
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.26
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.16
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.14
PF01636	239	APH: Phosphotransferase enzyme family This family	98.07
PLN02876	822	acyl-CoA dehydrogenase	98.02
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.01
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.0
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.98
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.96
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.93
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.87
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.87
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.86
PRK10593	297	hypothetical protein; Provisional	97.71
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.64
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.47
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.44
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.3
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.26
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.22
PRK05231	319	homoserine kinase; Provisional	97.06
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.99
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.77
PLN02236	344	choline kinase	96.69
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.61
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.56
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.32
KOG2268	465	consensus Serine/threonine protein kinase [Signal	96.14
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.13
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.08
KOG2270	520	consensus Serine/threonine protein kinase involved	95.82
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	95.78
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	95.55
COG2334	331	Putative homoserine kinase type II (protein kinase	95.45
PLN02756	418	S-methyl-5-thioribose kinase	95.36
PTZ00384	383	choline kinase; Provisional	95.15
PRK11768	325	serine/threonine protein kinase; Provisional	94.78
PRK12396	409	5-methylribose kinase; Reviewed	94.72
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	94.52
KOG1236	565	consensus Predicted unusual protein kinase [Genera	93.42
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	93.23
PRK06148	1013	hypothetical protein; Provisional	92.9
PTZ00296	442	choline kinase; Provisional	92.68
PLN03150	623	hypothetical protein; Provisional	92.16

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-56  Score=444.03  Aligned_cols=289  Identities=43%  Similarity=0.732  Sum_probs=250.7

Q ss_pred             CCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChh-hHhHHHHHHHHHhCCCCCcc
Q 011995          161 TLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLC  239 (473)
Q Consensus       161 ~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ei~~l~~l~HpnIv  239 (473)
                      ..+.|+++||..+|++|...+.||+|+||.||+|.+.++.    .  ++|+++...... ..+|.+|+++|.+++|||+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~----~--vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv  134 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGT----V--VAVKRLSSNSGQGEREFLNEVEILSRLRHPNLV  134 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCC----E--EEEEEecCCCCcchhHHHHHHHHHhcCCCcCcc
Confidence            5677999999999999999999999999999999998862    2  444555543332 66799999999999999999


Q ss_pred             cceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       240 ~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      +|+|||.+.+. +.+||||||++|+|.++|+..... .++|..|++||.++|+||+|||...+++|||||||++|||||+
T Consensus       135 ~LlGyC~e~~~-~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~  212 (361)
T KOG1187|consen  135 KLLGYCLEGGE-HRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE  212 (361)
T ss_pred             cEEEEEecCCc-eEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC
Confidence            99999997631 699999999999999999875433 8999999999999999999999999888999999999999999


Q ss_pred             CCcEEEeccCCCcccCC-CCc-cCc-ccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          320 DFSAKLSGYGCAGHIPE-TDI-SNS-SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~-~~~-~~~-~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      ++++||+|||+|+..+. ... ... .||.+|++||++..+..+.++|||||||+|+||+||+.+.+...+.....++.|
T Consensus       213 ~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w  292 (361)
T KOG1187|consen  213 DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEW  292 (361)
T ss_pred             CCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHH
Confidence            99999999999977654 322 222 789999999999999999999999999999999999999987655555568899


Q ss_pred             cccccccccccccccccccC-CCCCH-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          397 SRPFLADDCRLSLIMDPQLK-GRFPL-KAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ..+.+.++ .+..++|+.+. +.++. .....+..++.+|++.+|.+||+|.||++.|+.+...
T Consensus       293 ~~~~~~~~-~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  293 AKPLLEEG-KLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHHHCc-chhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            88877776 88999999987 66664 6778899999999999999999999999999776644

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-53  Score=401.23  Aligned_cols=256  Identities=24%  Similarity=0.380  Sum_probs=220.2

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      +++.||+..       +.||+|..|+||++.   +..+.+.+|.|++.+.......+++.+|+++++.++||+||.+||.
T Consensus        76 i~~~dle~~-------~~lG~G~gG~V~kv~---Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~yga  145 (364)
T KOG0581|consen   76 ISLSDLERL-------GVLGSGNGGTVYKVR---HKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGA  145 (364)
T ss_pred             cCHHHhhhh-------hhcccCCCcEEEEEE---EcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEE
Confidence            677788776       999999999999999   4556788999999888888889999999999999999999999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcE
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      |+.++. .++|+||||++|||++++..   .+.+++....+|+.+|++||.|||+ ++   ||||||||+|||++..|+|
T Consensus       146 F~~~~~-~isI~mEYMDgGSLd~~~k~---~g~i~E~~L~~ia~~VL~GL~YLh~~~~---IIHRDIKPsNlLvNskGeV  218 (364)
T KOG0581|consen  146 FYSNGE-EISICMEYMDGGSLDDILKR---VGRIPEPVLGKIARAVLRGLSYLHEERK---IIHRDIKPSNLLVNSKGEV  218 (364)
T ss_pred             EEeCCc-eEEeehhhcCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHhhccC---eeeccCCHHHeeeccCCCE
Confidence            998743 69999999999999999843   3579999999999999999999996 66   9999999999999999999


Q ss_pred             EEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh--HHHHhHhhhccccc
Q 011995          324 KLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP--KEERNLVKWSRPFL  401 (473)
Q Consensus       324 kl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~--~~~~~~~~~~~~~~  401 (473)
                      ||||||.++.+.+....+++||..|||||.+.++.|+.++||||||++++||.+|+.||.....  .....+..      
T Consensus       219 KicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~------  292 (364)
T KOG0581|consen  219 KICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLC------  292 (364)
T ss_pred             EeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHH------
Confidence            9999999998877777889999999999999999999999999999999999999999987411  11111111      


Q ss_pred             ccccccccccccccCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLK-AARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~-~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             .+.+.. ...+|.. ++.++++|+..||++||.+||++.|++++
T Consensus       293 -------~Iv~~p-pP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  293 -------AIVDEP-PPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             -------HHhcCC-CCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                   122211 1123443 88999999999999999999999999874

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-49  Score=390.75  Aligned_cols=255  Identities=25%  Similarity=0.417  Sum_probs=211.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      ..||+|+||+||+|.+++...      ++++.+..   .....+.|.+|+.+|.+++|||||+++|+|.... ..++|||
T Consensus        47 ~~iG~G~~g~V~~~~~~g~~~------vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~-~~~~iVt  119 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKWRGTDV------VAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPP-GSLCIVT  119 (362)
T ss_pred             hhcccCCceeEEEEEeCCcee------EEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-CceEEEE
Confidence            669999999999999987652      33333332   2222678999999999999999999999998752 2699999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCCCcccCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGCAGHIPE  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGla~~~~~  336 (473)
                      |||++|+|.++++.. ....+++..++.|+.|||+||.|||++++  |||||||++|||++.++ ++||+|||+++....
T Consensus       120 Ey~~~GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~  196 (362)
T KOG0192|consen  120 EYMPGGSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVI  196 (362)
T ss_pred             EeCCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeecc
Confidence            999999999999764 35679999999999999999999999984  99999999999999997 999999999987755


Q ss_pred             --CCccCcccccccCChhhhh--cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          337 --TDISNSSVAAANLSVETLE--RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       337 --~~~~~~~~t~~y~aPE~~~--~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                        ...+...||..|||||++.  ...|+.++|||||||++|||+||+.||.+....+....                +..
T Consensus       197 ~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~----------------v~~  260 (362)
T KOG0192|consen  197 SKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASA----------------VVV  260 (362)
T ss_pred             ccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHH----------------HHh
Confidence              3444578999999999999  56899999999999999999999999998775322111                112


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ...+..++..+...+..++.+||..||.+||++.+|+..|+.+......
T Consensus       261 ~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~~  309 (362)
T KOG0192|consen  261 GGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHISS  309 (362)
T ss_pred             cCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhcc
Confidence            2233344556788999999999999999999999999999988776554

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-48  Score=390.16  Aligned_cols=248  Identities=21%  Similarity=0.380  Sum_probs=216.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..|..+++||+|||+.||+++   +..++..+|+|++...  .+....+.+.+||+|.+.|+|||||++++||++.  ++
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~---~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs--~n   92 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEAR---DLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDS--NN   92 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEE---EcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecC--Cc
Confidence            468999999999999999998   4445566677776543  3556678899999999999999999999999876  89


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|||+|+|..++|..++.   ....+++.++..++.||+.||.|||+++   |||||||..|+||+++.+|||+|||||.
T Consensus        93 VYivLELC~~~sL~el~K---rrk~ltEpEary~l~QIv~GlkYLH~~~---IiHRDLKLGNlfL~~~~~VKIgDFGLAt  166 (592)
T KOG0575|consen   93 VYIVLELCHRGSLMELLK---RRKPLTEPEARYFLRQIVEGLKYLHSLG---IIHRDLKLGNLFLNENMNVKIGDFGLAT  166 (592)
T ss_pred             eEEEEEecCCccHHHHHH---hcCCCCcHHHHHHHHHHHHHHHHHHhcC---ceecccchhheeecCcCcEEecccceee
Confidence            999999999999999985   3457999999999999999999999999   9999999999999999999999999999


Q ss_pred             ccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .+...  .-.+.+|||.|+|||++.....+..+||||+|||+|-||.|++||....-.+....|.-..            
T Consensus       167 ~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~------------  234 (592)
T KOG0575|consen  167 QLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNE------------  234 (592)
T ss_pred             eecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcC------------
Confidence            88643  4467799999999999999889999999999999999999999999877666655553221            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            ..+|..++.++.+||.++|+.||.+|||+.+||..
T Consensus       235 ------Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  235 ------YSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             ------cccccccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                  12366788999999999999999999999999864

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-47  Score=378.89  Aligned_cols=262  Identities=23%  Similarity=0.411  Sum_probs=220.3

Q ss_pred             CCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCccc
Q 011995          161 TLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK  240 (473)
Q Consensus       161 ~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~  240 (473)
                      ....+..+++...       +.||+|-||.||.|.+.....      ++++.+.......+.|.+|+++|.+|+|+|||+
T Consensus       199 d~wei~r~~l~l~-------~~LG~G~FG~V~~g~~~~~~~------vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~  265 (468)
T KOG0197|consen  199 DPWEIPREELKLI-------RELGSGQFGEVWLGKWNGSTK------VAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVK  265 (468)
T ss_pred             CCeeecHHHHHHH-------HHhcCCccceEEEEEEcCCCc------ccceEEeccccChhHHHHHHHHHHhCcccCeEE
Confidence            3445666777665       899999999999999987643      333333333455688999999999999999999


Q ss_pred             ceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       241 l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ++|+|..+  +.+|||||||+.|+|.++|.. ..+..+.....+.++.|||+|++||++++   +|||||.+.||||+++
T Consensus       266 l~gV~~~~--~piyIVtE~m~~GsLl~yLr~-~~~~~l~~~~Ll~~a~qIaeGM~YLes~~---~IHRDLAARNiLV~~~  339 (468)
T KOG0197|consen  266 LYGVCTKQ--EPIYIVTEYMPKGSLLDYLRT-REGGLLNLPQLLDFAAQIAEGMAYLESKN---YIHRDLAARNILVDED  339 (468)
T ss_pred             EEEEEecC--CceEEEEEecccCcHHHHhhh-cCCCccchHHHHHHHHHHHHHHHHHHhCC---ccchhhhhhheeeccC
Confidence            99999876  579999999999999999975 34677999999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCccCccc---ccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhh
Q 011995          321 FSAKLSGYGCAGHIPETDISNSSV---AAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~~~~~~---t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~  396 (473)
                      ..+||+|||+|+....+.+....+   ...|.|||.+..+.++.+||||||||+||||+| |+.||.+....+....++ 
T Consensus       340 ~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le-  418 (468)
T KOG0197|consen  340 LVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLE-  418 (468)
T ss_pred             ceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHh-
Confidence            999999999999665555543333   468999999999999999999999999999998 999999887766555443 


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                            .+.++          ..|..++.++.+++..||..+|++|||++.+...|+++...
T Consensus       419 ------~GyRl----------p~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  419 ------RGYRL----------PRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ------ccCcC----------CCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence                  22222          23778899999999999999999999999999999987653

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-47  Score=366.35  Aligned_cols=249  Identities=21%  Similarity=0.348  Sum_probs=201.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..+|...+.||+|+||+||+|++.+...   .+++|.+.... .....+.+..|+.+|+.++|||||.|++++..+  +.
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~---~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~--~~   83 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGT---EVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDD--DF   83 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCc---eEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecC--Ce
Confidence            4678888999999999999999876553   33333332222 445567788999999999999999999999887  89


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC------CcEEEe
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD------FSAKLS  326 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~------~~vkl~  326 (473)
                      +|||||||+||+|.++|+.+   +.+++.++..++.|++.||++||+++   ||||||||.||||+..      -.+||+
T Consensus        84 i~lVMEyC~gGDLs~yi~~~---~~l~e~t~r~Fm~QLA~alq~L~~~~---IiHRDLKPQNiLLs~~~~~~~~~~LKIA  157 (429)
T KOG0595|consen   84 IYLVMEYCNGGDLSDYIRRR---GRLPEATARHFMQQLASALQFLHENN---IIHRDLKPQNILLSTTARNDTSPVLKIA  157 (429)
T ss_pred             EEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCcceEEeccCCCCCCCceEEec
Confidence            99999999999999999654   37999999999999999999999999   9999999999999764      468999


Q ss_pred             ccCCCcccCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          327 GYGCAGHIPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       327 DFGla~~~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      |||+|+.+..... .+.+|++.|||||++....|+.|+|+||+|+|+|+|++|.+||......+....++....      
T Consensus       158 DFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~------  231 (429)
T KOG0595|consen  158 DFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNE------  231 (429)
T ss_pred             ccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcccc------
Confidence            9999999976644 567999999999999999999999999999999999999999998777666554433221      


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI  448 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei  448 (473)
                               +...++...+..+.+++...++.++.+|.+..+-
T Consensus       232 ---------~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~  265 (429)
T KOG0595|consen  232 ---------IVPVLPAELSNPLRELLISLLQRNPKDRISFEDF  265 (429)
T ss_pred             ---------ccCchhhhccCchhhhhhHHHhcCccccCchHHh
Confidence                     1112233444555667777777777777665543

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3e-48  Score=370.16  Aligned_cols=253  Identities=17%  Similarity=0.252  Sum_probs=207.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh------hhHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ------GVKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      .+.|...+.||+|+||.|-+|.   ...+++.+|+|++.......      ....+.+|+++|++++|||||++++++..
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~---e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~  247 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAY---EKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV  247 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEE---EcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec
Confidence            4567888999999999999998   56677888888876543211      23446799999999999999999999987


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---CcEE
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---FSAK  324 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~~vk  324 (473)
                      .  +..||||||+.||+|.+.+..   .+.+.+..-+.+++|++.||.|||++|   |+||||||+|||+..+   ..+|
T Consensus       248 ~--ds~YmVlE~v~GGeLfd~vv~---nk~l~ed~~K~~f~Qll~avkYLH~~G---I~HRDiKPeNILl~~~~e~~llK  319 (475)
T KOG0615|consen  248 P--DSSYMVLEYVEGGELFDKVVA---NKYLREDLGKLLFKQLLTAVKYLHSQG---IIHRDIKPENILLSNDAEDCLLK  319 (475)
T ss_pred             C--CceEEEEEEecCccHHHHHHh---ccccccchhHHHHHHHHHHHHHHHHcC---cccccCCcceEEeccCCcceEEE
Confidence            6  788999999999999999954   446788888999999999999999999   9999999999999766   7799


Q ss_pred             EeccCCCcccCCCC-ccCcccccccCChhhhhcCC---CCCcCCchHHHHHHHHHHcCCCCCCCCChHH-HHhHhhhccc
Q 011995          325 LSGYGCAGHIPETD-ISNSSVAAANLSVETLERGL---LTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-ERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~---~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-~~~~~~~~~~  399 (473)
                      |+|||+|+...... +.+.+||+.|.|||++.+..   +..++||||+||+||.+++|.+||.+..... ..+.+...+-
T Consensus       320 ItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y  399 (475)
T KOG0615|consen  320 ITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRY  399 (475)
T ss_pred             ecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcc
Confidence            99999999886553 46779999999999997654   3348899999999999999999998765443 3333322111


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .              ........++++..+||.+||..||++|||+.|+|+.
T Consensus       400 ~--------------f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  400 A--------------FGPLQWDRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             c--------------ccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence            0              0011245788999999999999999999999999874

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.6e-47  Score=371.10  Aligned_cols=267  Identities=22%  Similarity=0.272  Sum_probs=217.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .+.|+....||+|+||.||+|+   +..+++.+|+|.+++.. ......-..+||.||++|.|||||+|.+...+.....
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr---~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~s  192 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKAR---DLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGS  192 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEee---ecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCce
Confidence            3456666899999999999998   66788899999998876 3444566789999999999999999999998875678


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|||+|||++ +|..++.  ..+..|+..+++.++.|++.||+|||.++   |+|||||.+|||||.+|.+||+|||||+
T Consensus       193 iYlVFeYMdh-DL~GLl~--~p~vkft~~qIKc~mkQLl~Gl~~cH~~g---vlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  193 IYLVFEYMDH-DLSGLLS--SPGVKFTEPQIKCYMKQLLEGLEYCHSRG---VLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             EEEEEecccc-hhhhhhc--CCCcccChHHHHHHHHHHHHHHHHHhhcC---eeeccccccceEEcCCCCEEecccccee
Confidence            9999999987 8988884  34567999999999999999999999999   9999999999999999999999999999


Q ss_pred             ccCCC---CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc-
Q 011995          333 HIPET---DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL-  407 (473)
Q Consensus       333 ~~~~~---~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-  407 (473)
                      ++...   .+++.++|.||.|||.+.|.. |+.+.|+||.||||.||++|++.|.+..+.++.+.|-.......++.+. 
T Consensus       267 ~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~  346 (560)
T KOG0600|consen  267 FYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPV  346 (560)
T ss_pred             eccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhcccc
Confidence            77543   467789999999999998864 9999999999999999999999999999888877663221111111110 


Q ss_pred             ---c--ccccc------ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          408 ---S--LIMDP------QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       408 ---~--~~~~~------~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         .  ..+.+      .+.+. -...+....+|+..+|..||.+|.|+.++|+
T Consensus       347 ~kLP~~~~~kp~~~y~r~l~E~-~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  347 SKLPHATIFKPQQPYKRRLRET-FKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             ccCCcccccCCCCcccchHHHH-hccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence               0  01111      11111 1234567789999999999999999999885

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=8.4e-47  Score=347.19  Aligned_cols=264  Identities=18%  Similarity=0.277  Sum_probs=206.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChh-hHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +.|+...++|+|+||+||+|+.+   .++..+|+|...-...... .+-.++||.+|++++|+|+|.|+++|...  ..+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk---~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrk--rkl   76 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNK---DTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRK--RKL   76 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccC---CcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhc--cee
Confidence            46777899999999999999844   4556655555443333333 44568999999999999999999999776  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||+|||+. ++.+-|...  ...++...+.+++.|++.|+.|+|+++   +|||||||+||||+.+|.+||||||+|+.
T Consensus        77 hLVFE~~dh-TvL~eLe~~--p~G~~~~~vk~~l~Q~l~ai~~cHk~n---~IHRDIKPENILit~~gvvKLCDFGFAR~  150 (396)
T KOG0593|consen   77 HLVFEYCDH-TVLHELERY--PNGVPSELVKKYLYQLLKAIHFCHKNN---CIHRDIKPENILITQNGVVKLCDFGFART  150 (396)
T ss_pred             EEEeeecch-HHHHHHHhc--cCCCCHHHHHHHHHHHHHHhhhhhhcC---eecccCChhheEEecCCcEEeccchhhHh
Confidence            999999988 444445433  334888999999999999999999999   99999999999999999999999999998


Q ss_pred             cC--CCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc-cc-------cc
Q 011995          334 IP--ETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR-PF-------LA  402 (473)
Q Consensus       334 ~~--~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~-~~-------~~  402 (473)
                      +.  ...++..+.|.||.|||.+.+ ..|+..+|||++||++.||++|++.|.+..+.++...|.... ..       ..
T Consensus       151 L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~  230 (396)
T KOG0593|consen  151 LSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFS  230 (396)
T ss_pred             hcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhc
Confidence            85  334566788999999999988 569999999999999999999999999988777665553211 00       11


Q ss_pred             c-----ccccccccccc-cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 D-----DCRLSLIMDPQ-LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~-----~~~~~~~~~~~-l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .     +..+....++. +...++ ..+.-+.+|+..||+.||++|++.++++.
T Consensus       231 ~N~~F~Gv~lP~~~~~epLe~k~p-~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  231 SNPFFHGVRLPEPEHPEPLERKYP-KISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             cCCceeeeecCCCCCccchhhhcc-cchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            1     11111111211 122222 55668899999999999999999999985

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.3e-48  Score=350.55  Aligned_cols=259  Identities=15%  Similarity=0.225  Sum_probs=206.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|++.++||+|.||.||++..   ..+++.++.|.+.... .....+....|+.+|++|+|||||+++++...++..-++
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~---~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln   96 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQC---LLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN   96 (375)
T ss_pred             HHHHHHHHcCCcchheEEeee---ccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence            466669999999999999983   3344555555444432 345567789999999999999999999865544435589


Q ss_pred             EEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCC-CceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          255 LIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGP-FQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~-~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ||||||++|+|..++... .....+++.++++++.|++.||.++|..-+ ..|+||||||.||+|+.+|.|||+||||++
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r  176 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGR  176 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHh
Confidence            999999999999998553 345678999999999999999999998331 139999999999999999999999999999


Q ss_pred             ccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .+....  ..+.+|||.||+||.+.+..|+.+|||||+||++|||+.-++||.+.+-.+.-..|...             
T Consensus       177 ~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qg-------------  243 (375)
T KOG0591|consen  177 FLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQG-------------  243 (375)
T ss_pred             HhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcC-------------
Confidence            886553  24568999999999999999999999999999999999999999987544433222211             


Q ss_pred             cccccCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          411 MDPQLKGRFP-LKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       411 ~~~~l~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                         . ...+| ...+.++..+|..|+..||..||+.-.++..+..
T Consensus       244 ---d-~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  244 ---D-YPPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             ---C-CCCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence               1 11124 6788999999999999999999996555555543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-46  Score=354.77  Aligned_cols=243  Identities=19%  Similarity=0.248  Sum_probs=206.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||.||.++..   .+.+.+|+|+.+...  .....+...+|..||..++||+||+++-.|++.  +
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~---dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~--~   98 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKK---DTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTE--E   98 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEc---ccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccC--C
Confidence            457888899999999999999854   567888888766542  334567889999999999999999998777665  8


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|||+||+.||.|.-+|.   ..+.+++..+.-++.+|+.||.|||+++   ||||||||+|||||.+|+++|+||||+
T Consensus        99 kLylVld~~~GGeLf~hL~---~eg~F~E~~arfYlaEi~lAL~~LH~~g---IiyRDlKPENILLd~~GHi~LtDFgL~  172 (357)
T KOG0598|consen   99 KLYLVLDYLNGGELFYHLQ---REGRFSEDRARFYLAEIVLALGYLHSKG---IIYRDLKPENILLDEQGHIKLTDFGLC  172 (357)
T ss_pred             eEEEEEeccCCccHHHHHH---hcCCcchhHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHeeecCCCcEEEeccccc
Confidence            9999999999999999994   3457999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +.....  ...+.+||+.|||||++.+..|+.++|+||||+++|||++|.+||...+.....+.+....           
T Consensus       173 k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k-----------  241 (357)
T KOG0598|consen  173 KEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGK-----------  241 (357)
T ss_pred             hhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCc-----------
Confidence            855332  3455699999999999999999999999999999999999999999888766655443221           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT  444 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt  444 (473)
                            ....+...+.++++++.++|.+||.+|.-
T Consensus       242 ------~~~~p~~ls~~ardll~~LL~rdp~~RLg  270 (357)
T KOG0598|consen  242 ------LPLPPGYLSEEARDLLKKLLKRDPRQRLG  270 (357)
T ss_pred             ------CCCCCccCCHHHHHHHHHHhccCHHHhcC
Confidence                  00113346788999999999999999963

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.6e-45  Score=333.48  Aligned_cols=265  Identities=18%  Similarity=0.278  Sum_probs=215.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh-hhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+|...+.||+|.||+||+|+   +..+++.+|+|.+++....+ ......+||+.|+.++|+||+.++++|...  +.+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~---d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~--~~l   76 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKAR---DTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHK--SNL   76 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEE---ecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCC--Cce
Confidence            357777999999999999998   55677888888877765433 346789999999999999999999999766  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      .||+|||+. +|...+..  ....++...+..++.++++||+|||.++   |+||||||.|+||+.+|.+||+|||+|+.
T Consensus        77 ~lVfEfm~t-dLe~vIkd--~~i~l~pa~iK~y~~m~LkGl~y~H~~~---IlHRDlKPnNLLis~~g~lKiADFGLAr~  150 (318)
T KOG0659|consen   77 SLVFEFMPT-DLEVVIKD--KNIILSPADIKSYMLMTLKGLAYCHSKW---ILHRDLKPNNLLISSDGQLKIADFGLARF  150 (318)
T ss_pred             EEEEEeccc-cHHHHhcc--cccccCHHHHHHHHHHHHHHHHHHHhhh---hhcccCCccceEEcCCCcEEeecccchhc
Confidence            999999966 99999954  4567899999999999999999999999   99999999999999999999999999998


Q ss_pred             cCCCC--ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc--------cccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR--------PFLA  402 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~--------~~~~  402 (473)
                      +....  ....+.|.||.|||.+.|.. |+...||||.|||+.||+-|.+-|.+..+.++...+-.+.        |-+.
T Consensus       151 f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~  230 (318)
T KOG0659|consen  151 FGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMT  230 (318)
T ss_pred             cCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCcccc
Confidence            86543  34448899999999997764 9999999999999999999999999988887776663221        1111


Q ss_pred             ---cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 ---DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ---~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         +-..+...-.+.+..-| ..++.++.+|+..+|..||.+|+|+.|++++
T Consensus       231 ~lpdY~~~~~~P~~~~~~lf-~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  231 SLPDYVKIQQFPKPPLNNLF-PAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             ccccHHHHhcCCCCcccccc-ccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence               11111111122222222 3566777999999999999999999999864

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-45  Score=361.19  Aligned_cols=252  Identities=23%  Similarity=0.302  Sum_probs=214.4

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeec
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHAR  247 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~  247 (473)
                      ....++|..++.||+|+|++|++|+   +..+.+.+|+||....  ..+..++.+.+|-++|.+| .||.||+|+--|.+
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~---~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD  145 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAR---EKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQD  145 (604)
T ss_pred             cCChhhcchhheeccccceeEEEee---ecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeec
Confidence            4556889999999999999999998   4557788888875433  2344556778899999999 89999999877766


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                      +  ..+|+|+||+++|+|.++|.+   -+.|++.....++.+|+.||+|||++|   ||||||||+|||||.||.+||.|
T Consensus       146 ~--~sLYFvLe~A~nGdll~~i~K---~Gsfde~caR~YAAeIldAleylH~~G---IIHRDlKPENILLd~dmhikITD  217 (604)
T KOG0592|consen  146 E--ESLYFVLEYAPNGDLLDLIKK---YGSFDETCARFYAAEILDALEYLHSNG---IIHRDLKPENILLDKDGHIKITD  217 (604)
T ss_pred             c--cceEEEEEecCCCcHHHHHHH---hCcchHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeEcCCCcEEEee
Confidence            5  899999999999999999954   357999999999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccCCCC---------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          328 YGCAGHIPETD---------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       328 FGla~~~~~~~---------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      ||.|+.+....               ...++||..|.+||++..+..++.+|||+||||||.|+.|.+||.+.++.....
T Consensus       218 FGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFq  297 (604)
T KOG0592|consen  218 FGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQ  297 (604)
T ss_pred             ccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHH
Confidence            99998774211               134789999999999999999999999999999999999999999888766555


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .|..                  +.-.|+...++.+.+||.++|..||.+|+|..+|.++
T Consensus       298 kI~~------------------l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  298 KIQA------------------LDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             HHHH------------------hcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhC
Confidence            4431                  1123456666899999999999999999999888654

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-45  Score=355.53  Aligned_cols=257  Identities=21%  Similarity=0.343  Sum_probs=203.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|...+.||+|+||+||++...++   +...++|......... .+.+.+|+.+|++++|||||+++|.........++
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~---g~~~AvK~v~~~~~~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~   92 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKT---GELMAVKSVELEDSPT-SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYN   92 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCC---Ccceeeeeeecccchh-HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeE
Confidence            4567779999999999999996653   3344455554442222 67789999999999999999999975443213689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl~DFGla~~  333 (473)
                      +.|||+++|+|.+++.... + .|++..+..++.||+.||+|||+++   ||||||||+|||++. ++.+||+|||++..
T Consensus        93 i~mEy~~~GsL~~~~~~~g-~-~l~E~~v~~ytr~iL~GL~ylHs~g---~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~  167 (313)
T KOG0198|consen   93 IFMEYAPGGSLSDLIKRYG-G-KLPEPLVRRYTRQILEGLAYLHSKG---IVHCDIKPANILLDPSNGDVKLADFGLAKK  167 (313)
T ss_pred             eeeeccCCCcHHHHHHHcC-C-CCCHHHHHHHHHHHHHHHHHHHhCC---EeccCcccceEEEeCCCCeEEeccCccccc
Confidence            9999999999999996542 2 7999999999999999999999999   999999999999999 79999999999987


Q ss_pred             cCC-----CCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCC-ChHHHHhHhhhcccccccccc
Q 011995          334 IPE-----TDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSR-HPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       334 ~~~-----~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~-~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ...     .......||+.|||||++..+ ....++|||||||+++||+||.+||... ........+            
T Consensus       168 ~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~i------------  235 (313)
T KOG0198|consen  168 LESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLI------------  235 (313)
T ss_pred             cccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHH------------
Confidence            652     223456889999999999853 3446999999999999999999999863 211111111            


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                          ........+|..++.++.+|+.+|+.+||++||||.++|+..--..
T Consensus       236 ----g~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~  281 (313)
T KOG0198|consen  236 ----GREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQ  281 (313)
T ss_pred             ----hccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhc
Confidence                0001112456778899999999999999999999999998766433

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-44  Score=355.65  Aligned_cols=249  Identities=22%  Similarity=0.338  Sum_probs=207.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ..|.....||+|..|.||.|.-..   ....++++.+.+. .....+-+++|+.+|+..+|+|||.+++.|...  +.+|
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~---~~~~VaiK~m~l~-~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~--deLW  346 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKIS---TKQEVAIKRMDLR-KQPKKELLLNEILVMRDLHHPNIVNFLDSYLVG--DELW  346 (550)
T ss_pred             hhhcchhhhccccccceeeeeecc---CCceEEEEEEEec-cCCchhhhHHHHHHHHhccchHHHHHHHHhccc--ceeE
Confidence            346777899999999999998433   3333444444332 223345578999999999999999999988876  8899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|||||++|+|.|.+.    ...+++.+++.|++++++||+|||.++   |+|||||.+|||++.+|.+||+|||++..+
T Consensus       347 VVMEym~ggsLTDvVt----~~~~~E~qIA~Icre~l~aL~fLH~~g---IiHrDIKSDnILL~~~g~vKltDFGFcaqi  419 (550)
T KOG0578|consen  347 VVMEYMEGGSLTDVVT----KTRMTEGQIAAICREILQGLKFLHARG---IIHRDIKSDNILLTMDGSVKLTDFGFCAQI  419 (550)
T ss_pred             EEEeecCCCchhhhhh----cccccHHHHHHHHHHHHHHHHHHHhcc---eeeeccccceeEeccCCcEEEeeeeeeecc
Confidence            9999999999999983    345999999999999999999999999   999999999999999999999999998776


Q ss_pred             CCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...  ...+.+||+.|||||++....|+++.||||||+|++||+.|++||-..++.....++.-.               
T Consensus       420 ~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~n---------------  484 (550)
T KOG0578|consen  420 SEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATN---------------  484 (550)
T ss_pred             ccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhc---------------
Confidence            544  345669999999999999999999999999999999999999999877666555444211               


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ....-..+..++..+++|+.+||+.|+.+|+++.|+|+.
T Consensus       485 g~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  485 GTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             CCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence            111223477889999999999999999999999999974

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.9e-45  Score=340.30  Aligned_cols=267  Identities=19%  Similarity=0.241  Sum_probs=214.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhh-HhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.|++|+||.||+|+   +..+...+|.|..+......+. -.-++||.+|.+++|||||.+-.+.....-+.+|
T Consensus        77 efe~lnrI~EGtyGiVYRak---dk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy  153 (419)
T KOG0663|consen   77 EFEKLNRIEEGTYGVVYRAK---DKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY  153 (419)
T ss_pred             HHHHHhhcccCcceeEEEec---cCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence            34555999999999999998   5556666666666554433332 3468999999999999999999998877778899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||||||++ +|..++...  ..+|...+++.++.|++.||+|||.++   |+|||||++|+|+++.|.+||+|||+|+.+
T Consensus       154 ~VMe~~Eh-DLksl~d~m--~q~F~~~evK~L~~QlL~glk~lH~~w---ilHRDLK~SNLLm~~~G~lKiaDFGLAR~y  227 (419)
T KOG0663|consen  154 IVMEYVEH-DLKSLMETM--KQPFLPGEVKTLMLQLLRGLKHLHDNW---ILHRDLKTSNLLLSHKGILKIADFGLAREY  227 (419)
T ss_pred             eeHHHHHh-hHHHHHHhc--cCCCchHHHHHHHHHHHHHHHHHhhce---eEecccchhheeeccCCcEEecccchhhhh
Confidence            99999977 999988543  467999999999999999999999999   999999999999999999999999999988


Q ss_pred             CCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc--------ccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR--------PFLAD  403 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~--------~~~~~  403 (473)
                      ...  .++..++|.||.|||.+.+.. |+.+.||||+|||+.||+++.+.|.+....++.+.|-...        |-+..
T Consensus       228 gsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~  307 (419)
T KOG0663|consen  228 GSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSE  307 (419)
T ss_pred             cCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccc
Confidence            654  467779999999999998765 9999999999999999999999999988877766553111        11110


Q ss_pred             c-----cccccccccccCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 D-----CRLSLIMDPQLKGRFPLK-AARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~-----~~~~~~~~~~l~~~~~~~-~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      -     ..........++..|+.. .++..++|+..+|..||.+|.|+.|.|+.
T Consensus       308 lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  308 LPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             cchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            0     011111222344455544 67889999999999999999999999864

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-46  Score=359.06  Aligned_cols=266  Identities=19%  Similarity=0.247  Sum_probs=210.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHh--HHHHHHHHHhCC-CCCcccceeeeecCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE--FINDVNTLASLQ-HPNLCKLLGFHARDG  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ei~~l~~l~-HpnIv~l~g~~~~~~  249 (473)
                      ..++|...+.||.|+||.||+|+-.   ..+..+|+|.++.+  -...++  =+||+..|++++ |||||+|.+++.+..
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~---~~~~~VAIK~MK~K--f~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~   82 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSK---ETGELVAIKKMKKK--FYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDND   82 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeec---CCCceeeHHHHHhh--hccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccC
Confidence            3567888899999999999999843   34444444433322  222333  368999999998 999999999988763


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       ..+++|||||+. +|.+++..+  ...|++..+..|+.||++||+|+|.+|   +.|||+||+|||+..+..+||+|||
T Consensus        83 -~~L~fVfE~Md~-NLYqLmK~R--~r~fse~~irnim~QilqGL~hiHk~G---fFHRDlKPENiLi~~~~~iKiaDFG  155 (538)
T KOG0661|consen   83 -RILYFVFEFMDC-NLYQLMKDR--NRLFSESDIRNIMYQILQGLAHIHKHG---FFHRDLKPENILISGNDVIKIADFG  155 (538)
T ss_pred             -ceEeeeHHhhhh-hHHHHHhhc--CCcCCHHHHHHHHHHHHHHHHHHHhcC---cccccCChhheEecccceeEecccc
Confidence             399999999966 999999665  678999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC-CccCcccccccCChhhhh-cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc----
Q 011995          330 CAGHIPET-DISNSSVAAANLSVETLE-RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD----  403 (473)
Q Consensus       330 la~~~~~~-~~~~~~~t~~y~aPE~~~-~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~----  403 (473)
                      +|+.+... .++..+.|.||.|||++. .+.|+.+.|||++|||++|+++-++.|.+.++.++...+......-..    
T Consensus       156 LARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~  235 (538)
T KOG0661|consen  156 LAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWP  235 (538)
T ss_pred             cccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccch
Confidence            99988655 456678899999999985 566999999999999999999999999999888877666432111111    


Q ss_pred             -ccccccccccc--------cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 -DCRLSLIMDPQ--------LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 -~~~~~~~~~~~--------l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       +..+...++=.        +..-++ +++.++.++|.+|+.+||.+||||.++++.
T Consensus       236 eg~~La~~mnf~~P~~~~~~l~~L~p-~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  236 EGYNLASAMNFRFPQVKPSPLKDLLP-NASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             hHHHHHHHhccCCCcCCCCChHHhCc-ccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence             11111111111        111122 488999999999999999999999999975

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-44  Score=356.69  Aligned_cols=263  Identities=21%  Similarity=0.345  Sum_probs=209.1

Q ss_pred             CCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcc
Q 011995          161 TLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLC  239 (473)
Q Consensus       161 ~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv  239 (473)
                      ....++++|+...       ..||+|.||+||+|.|.++.      |||+.... ...+..+.|++|+.++++-+|.||+
T Consensus       385 ~~WeIp~~ev~l~-------~rIGsGsFGtV~Rg~whGdV------AVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIl  451 (678)
T KOG0193|consen  385 EEWEIPPEEVLLG-------ERIGSGSFGTVYRGRWHGDV------AVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENIL  451 (678)
T ss_pred             cccccCHHHhhcc-------ceeccccccceeecccccce------EEEEEecCCCCHHHHHHHHHHHHHHhhcchhhhe
Confidence            4455666666544       89999999999999998763      24444333 3555678899999999999999999


Q ss_pred             cceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       240 ~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      -+.|||..+   .+.||..+|.|-+|+.+|+..  ...|+..+...||.||++|+.|||.++   |||||||..||+|++
T Consensus       452 LFMG~~~~p---~~AIiTqwCeGsSLY~hlHv~--etkfdm~~~idIAqQiaqGM~YLHAK~---IIHrDLKSnNIFl~~  523 (678)
T KOG0193|consen  452 LFMGACMNP---PLAIITQWCEGSSLYTHLHVQ--ETKFDMNTTIDIAQQIAQGMDYLHAKN---IIHRDLKSNNIFLHE  523 (678)
T ss_pred             eeehhhcCC---ceeeeehhccCchhhhhccch--hhhhhHHHHHHHHHHHHHhhhhhhhhh---hhhhhccccceEEcc
Confidence            999999765   449999999999999999754  357999999999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccC----CCCccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          320 DFSAKLSGYGCAGHIP----ETDISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~----~~~~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      ++.|||+||||+..-.    ........+...|||||++..   ..|++.+||||||||+|||+||..||......+   
T Consensus       524 ~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dq---  600 (678)
T KOG0193|consen  524 DLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQ---  600 (678)
T ss_pred             CCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhh---
Confidence            9999999999986432    233445567789999999854   358999999999999999999999998433222   


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                       |-|..   ..+..   ..|.   .....++..++.+|+..||..++++||.+.+||..|+.+..
T Consensus       601 -IifmV---GrG~l---~pd~---s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  601 -IIFMV---GRGYL---MPDL---SKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             -eEEEe---ccccc---Cccc---hhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence             22211   11100   0000   01134677899999999999999999999999998888776

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-45  Score=378.97  Aligned_cols=261  Identities=25%  Similarity=0.417  Sum_probs=224.5

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ..+.||+|.||.||+|...+.........|+||.+++  +.+...+|.+|+++|..++|||||+|+|.|..+  +.+|||
T Consensus       490 ~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~--~P~~Mv  567 (774)
T KOG1026|consen  490 FKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREG--DPLCMV  567 (774)
T ss_pred             ehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccC--CeeEEE
Confidence            3389999999999999987776666777788887765  344678999999999999999999999999877  899999


Q ss_pred             EEeccCCChhhhhhcCC-------CC----CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEE
Q 011995          257 YERLFHGSLDRLIYGRS-------DG----PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL  325 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~-------~~----~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl  325 (473)
                      +|||..|||.++|....       .+    .+|+..+.+.||.|||.|++||-++.   +|||||.+.|+||+++..|||
T Consensus       568 FEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~---FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  568 FEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH---FVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc---ccccchhhhhceeccceEEEe
Confidence            99999999999996532       12    23889999999999999999999998   999999999999999999999


Q ss_pred             eccCCCcccCCCCccCcc----cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccc
Q 011995          326 SGYGCAGHIPETDISNSS----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       326 ~DFGla~~~~~~~~~~~~----~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      +|||+++.+...++....    ..++||+||.+..++|+.+||||||||+|||+++ |..||.+....+-.+.+...   
T Consensus       645 sDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g---  721 (774)
T KOG1026|consen  645 SDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAG---  721 (774)
T ss_pred             cccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcC---
Confidence            999999998887765443    4579999999999999999999999999999998 89999887666654444321   


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                                   ++ -..|.+++.++++|+..||+.+|.+||++.||-..|+.+......
T Consensus       722 -------------~l-L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~~  768 (774)
T KOG1026|consen  722 -------------QL-LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASPK  768 (774)
T ss_pred             -------------Cc-ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCcc
Confidence                         11 134788999999999999999999999999999999988765543

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.3e-44  Score=357.34  Aligned_cols=265  Identities=21%  Similarity=0.344  Sum_probs=205.7

Q ss_pred             hcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|++.+.||+|+||.||+|.+..  .......+++|+............+.+|+.++..+ +|||||+++++|...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~-   84 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN-   84 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC-
Confidence            3578888999999999999997532  22333445555554333344456789999999999 8999999999887543 


Q ss_pred             CceEEEEEeccCCChhhhhhcCCC--------------------------------------------------------
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSD--------------------------------------------------------  274 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~--------------------------------------------------------  274 (473)
                      ..+++||||+++|+|.+++.....                                                        
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence            568999999999999999864311                                                        


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc----cCcccccc
Q 011995          275 ---GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAA  347 (473)
Q Consensus       275 ---~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~  347 (473)
                         ...+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||+++.......    ....++..
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~  241 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLK  241 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCcc
Confidence               134888999999999999999999999   99999999999999999999999999976533211    12234578


Q ss_pred             cCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHH
Q 011995          348 NLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAART  426 (473)
Q Consensus       348 y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  426 (473)
                      |+|||++.+..++.++|||||||++|||++ |..||.+..........      +..+.          ....+..++..
T Consensus       242 y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~------~~~~~----------~~~~~~~~~~~  305 (338)
T cd05102         242 WMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQR------LKDGT----------RMRAPENATPE  305 (338)
T ss_pred             ccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHH------HhcCC----------CCCCCCCCCHH
Confidence            999999998899999999999999999997 99999865432211100      00000          00113345678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          427 VADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       427 l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      +.+++.+||+.||.+|||+.+|++.|+++..+
T Consensus       306 l~~li~~cl~~dp~~RPs~~el~~~l~~~~~~  337 (338)
T cd05102         306 IYRIMLACWQGDPKERPTFSALVEILGDLLQE  337 (338)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-45  Score=352.17  Aligned_cols=248  Identities=21%  Similarity=0.328  Sum_probs=215.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      .|....+||+|.||.||+|.   +..+.+.+++|++.+.......+.+.+|+.+|..++++||.++||.+..+  ..+++
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~---d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g--~~Lwi   88 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAI---DNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKG--TKLWI   88 (467)
T ss_pred             ccccchhccccccceeeeee---eccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeec--ccHHH
Confidence            46666899999999999998   66688999999999998888889999999999999999999999998876  88999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      +||||.+|++.+.|.   .+..+++..+..++.+++.||.|||.++   .+|||||+.|||+..+|.+||+|||++....
T Consensus        89 iMey~~gGsv~~lL~---~~~~~~E~~i~~ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql~  162 (467)
T KOG0201|consen   89 IMEYCGGGSVLDLLK---SGNILDEFEIAVILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQLT  162 (467)
T ss_pred             HHHHhcCcchhhhhc---cCCCCccceeeeehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeeee
Confidence            999999999999993   4455688899999999999999999999   9999999999999999999999999998776


Q ss_pred             CCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          336 ETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       336 ~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ...  ..+++||+.|||||++....|+.++||||||++.+||.+|.+|+...+++....                 ++..
T Consensus       163 ~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlf-----------------lIpk  225 (467)
T KOG0201|consen  163 NTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLF-----------------LIPK  225 (467)
T ss_pred             chhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEE-----------------eccC
Confidence            553  357799999999999998899999999999999999999999999877633221                 1111


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .....+...++..+++|+..||.+||+.||+|.++|+.
T Consensus       226 ~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  226 SAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             CCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence            22222334667889999999999999999999999864

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-44  Score=343.01  Aligned_cols=261  Identities=21%  Similarity=0.304  Sum_probs=211.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+.|+....||.|..++||+|+..   .....+++|+..+.........+.+|+..|+.++||||++++..|..+  ..+
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~---p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~--~~L   99 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCI---PTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVD--SEL   99 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeec---ccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEec--cee
Confidence            356888899999999999999843   344666777777776666789999999999999999999999888876  899


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+||.||.+||+.+++...... .+++..+..|+++++.||.|||.+|   .||||||+.||||+.+|.|||+|||.+..
T Consensus       100 WvVmpfMa~GS~ldIik~~~~~-Gl~E~~Ia~iLre~LkaL~YLH~~G---~IHRdvKAgnILi~~dG~VkLadFgvsa~  175 (516)
T KOG0582|consen  100 WVVMPFMAGGSLLDIIKTYYPD-GLEEASIATILREVLKALDYLHQNG---HIHRDVKAGNILIDSDGTVKLADFGVSAS  175 (516)
T ss_pred             EEeehhhcCCcHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHhcC---ceecccccccEEEcCCCcEEEcCceeeee
Confidence            9999999999999999764333 4999999999999999999999999   99999999999999999999999998755


Q ss_pred             cCCC------CccCcccccccCChhhhh--cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          334 IPET------DISNSSVAAANLSVETLE--RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       334 ~~~~------~~~~~~~t~~y~aPE~~~--~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +...      +..+.++|++|||||++.  ...|+.|+||||||++.+||.+|+.||....+.......-...+....  
T Consensus       176 l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~--  253 (516)
T KOG0582|consen  176 LFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLL--  253 (516)
T ss_pred             ecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcc--
Confidence            4322      124568899999999953  345999999999999999999999999988776655433322222111  


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            ...+..+-....+..+++++..||++||.+|||++++++.
T Consensus       254 ------t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  254 ------TSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             ------cccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence                  0011111133456689999999999999999999999863

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-43  Score=353.21  Aligned_cols=249  Identities=20%  Similarity=0.252  Sum_probs=207.2

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CC-hhhHhHHHHHHHHHhCC-CCCcccceeeee
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SS-QGVKEFINDVNTLASLQ-HPNLCKLLGFHA  246 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~  246 (473)
                      ...++|..++.||+|+||.|+.|....   +...+++++.....   .. ...+.+.+|+.++++++ ||||+++++++.
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~---t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~   90 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRL---TGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFA   90 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeecc---CCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEe
Confidence            446789999999999999999998543   33555666443321   11 34566778999999998 999999999998


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEE
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKL  325 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl  325 (473)
                      ..  ..+++||||+.+|+|.+++..   ..++.+..+..++.|++.|++|||+++   |+||||||+|||++.+ +++||
T Consensus        91 t~--~~~~ivmEy~~gGdL~~~i~~---~g~l~E~~ar~~F~Qlisav~y~H~~g---i~HRDLK~ENilld~~~~~~Kl  162 (370)
T KOG0583|consen   91 TP--TKIYIVMEYCSGGDLFDYIVN---KGRLKEDEARKYFRQLISAVAYCHSRG---IVHRDLKPENILLDGNEGNLKL  162 (370)
T ss_pred             cC--CeEEEEEEecCCccHHHHHHH---cCCCChHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEecCCCCCEEE
Confidence            87  669999999999999999954   457899999999999999999999999   9999999999999999 99999


Q ss_pred             eccCCCcccC--CCCccCcccccccCChhhhhcCC-CC-CcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          326 SGYGCAGHIP--ETDISNSSVAAANLSVETLERGL-LT-PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       326 ~DFGla~~~~--~~~~~~~~~t~~y~aPE~~~~~~-~s-~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      +|||++....  .....+.+||+.|+|||++.+.. |+ .++||||+||+||.|++|..||...+.......+....   
T Consensus       163 ~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~---  239 (370)
T KOG0583|consen  163 SDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGE---  239 (370)
T ss_pred             eccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCC---
Confidence            9999999883  34567789999999999999877 75 78999999999999999999999865544433322110   


Q ss_pred             ccccccccccccccCCCCCHHH-HHHHHHHHHHhcccCCCCCCCHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKA-ARTVADIALRCLQKEPSERPTMRSIF  449 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~-~~~l~~li~~cl~~dP~~RPt~~eil  449 (473)
                                     -.+|..+ +.++..++.+||..||.+|+|+.+|+
T Consensus       240 ---------------~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  240 ---------------FKIPSYLLSPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             ---------------ccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence                           1234444 89999999999999999999999999

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=1.6e-43  Score=348.44  Aligned_cols=246  Identities=21%  Similarity=0.318  Sum_probs=207.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|.+...||+|.||+||+|+   ...+.+.++++.+... ..+...+.+.+|++|++.++|||||.++++|+..  .++
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgr---rK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~--~~~   76 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGR---RKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETS--AHL   76 (808)
T ss_pred             cchhHHHHhcCCccceeeecc---cccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhccc--ceE
Confidence            467777899999999999998   5556667777765443 2444567799999999999999999999999876  899


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+|.||+.| +|..+|.   ....+++..+..|+.+++.||.|||+.+   |+|||+||.|||++..|.+|+||||+|+.
T Consensus        77 ~vVte~a~g-~L~~il~---~d~~lpEe~v~~~a~~LVsaL~yLhs~r---ilhrd~kPqniLl~~~~~~KlcdFg~Ar~  149 (808)
T KOG0597|consen   77 WVVTEYAVG-DLFTILE---QDGKLPEEQVRAIAYDLVSALYYLHSNR---ILHRDMKPQNILLEKGGTLKLCDFGLARA  149 (808)
T ss_pred             EEEehhhhh-hHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHhcC---cccccCCcceeeecCCCceeechhhhhhh
Confidence            999999966 9999994   4557999999999999999999999999   99999999999999999999999999998


Q ss_pred             cCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      +..+.  .+...||+.|||||.+.+..|+..+|+||+|||+|||++|++||......   +++..   ...+        
T Consensus       150 m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~---~Lv~~---I~~d--------  215 (808)
T KOG0597|consen  150 MSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSIT---QLVKS---ILKD--------  215 (808)
T ss_pred             cccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHH---HHHHH---HhcC--------
Confidence            75442  35568999999999999999999999999999999999999999653322   22221   1111        


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       +.   .+|.+.+..+.+|+...|.+||.+|.|-.+++.
T Consensus       216 -~v---~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  216 -PV---KPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             -CC---CCcccccHHHHHHHHHHhhcChhhcccHHHHhc
Confidence             11   236688999999999999999999999998875

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.7e-42  Score=344.97  Aligned_cols=267  Identities=19%  Similarity=0.298  Sum_probs=206.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||++.....   ...+++++............+.+|+++|+.++||||+++++++..+  +..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   78 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPS---GLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--GEI   78 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCC---CcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC--CEE
Confidence            36788999999999999999986543   3455566655443444567899999999999999999999998776  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++..   ...+++..+..++.|++.||.|||+.+  .|+||||||+|||++.++.+||+|||++..
T Consensus        79 ~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  153 (331)
T cd06649          79 SICMEHMDGGSLDQVLKE---AKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (331)
T ss_pred             EEEeecCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCccccc
Confidence            999999999999999954   335899999999999999999999864  399999999999999999999999999987


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc-------
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR-------  406 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------  406 (473)
                      ..........++..|+|||++.+..++.++|||||||++|||++|+.||......+....+..  +.......       
T Consensus       154 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  231 (331)
T cd06649         154 LIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGR--PVVDGEEGEPHSISP  231 (331)
T ss_pred             ccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcc--cccccccCCccccCc
Confidence            655444556788999999999988899999999999999999999999976554332221110  00000000       


Q ss_pred             -------------------------cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          407 -------------------------LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       407 -------------------------~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                                               ...+.............+.++.+|+.+||+.||++|||+.+|++.-
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         232 RPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             ccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                                     0000000000001123567899999999999999999999998764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-43  Score=347.99  Aligned_cols=251  Identities=22%  Similarity=0.396  Sum_probs=210.0

Q ss_pred             CCCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcc
Q 011995          160 GTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC  239 (473)
Q Consensus       160 ~~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv  239 (473)
                      .....+++++|...       .-||.|+.|.||+|++.+..++       ||+.+      +.-..+|+-|++|+|+|||
T Consensus       116 ~e~WeiPFe~IsEL-------eWlGSGaQGAVF~Grl~netVA-------VKKV~------elkETdIKHLRkLkH~NII  175 (904)
T KOG4721|consen  116 EELWEIPFEEISEL-------EWLGSGAQGAVFLGRLHNETVA-------VKKVR------ELKETDIKHLRKLKHPNII  175 (904)
T ss_pred             hhhccCCHHHhhhh-------hhhccCcccceeeeeccCceeh-------hHHHh------hhhhhhHHHHHhccCccee
Confidence            45667888988877       7899999999999999876643       32221      2223688999999999999


Q ss_pred             cceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       240 ~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      .+.|+|...  .++|||||||+.|-|...|.   .+..+.......|..+||.|+.|||.+.   |||||||.=||||..
T Consensus       176 ~FkGVCtqs--PcyCIiMEfCa~GqL~~VLk---a~~~itp~llv~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~  247 (904)
T KOG4721|consen  176 TFKGVCTQS--PCYCIIMEFCAQGQLYEVLK---AGRPITPSLLVDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISY  247 (904)
T ss_pred             eEeeeecCC--ceeEEeeeccccccHHHHHh---ccCccCHHHHHHHHHHhhhhhHHHHHhh---HhhhccCCCceEeec
Confidence            999999876  89999999999999999994   4567888999999999999999999998   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          320 DFSAKLSGYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +..|||+|||-++...... ...+.||..|||||++.+...+.|+|||||||||||||||..||.+-+...    |-|. 
T Consensus       248 ~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssA----IIwG-  322 (904)
T KOG4721|consen  248 DDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSA----IIWG-  322 (904)
T ss_pred             cceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhe----eEEe-
Confidence            9999999999988765442 345789999999999999999999999999999999999999998654322    1121 


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                                 +-...+.-..|..++.-+.-|+++||+..|..||++++|+..|+-
T Consensus       323 -----------VGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldI  367 (904)
T KOG4721|consen  323 -----------VGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDI  367 (904)
T ss_pred             -----------ccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhh
Confidence                       111122223467788999999999999999999999999999984

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.2e-43  Score=352.74  Aligned_cols=249  Identities=18%  Similarity=0.236  Sum_probs=213.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +-|+.++-||.|+-|.|-.|+   +..++...++|++...  ........+.+||.||+.+.||||+.+|+++++.  .+
T Consensus        12 GpwkLgkTLG~Gstg~vrlak---h~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~--~~   86 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAK---HAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENK--QH   86 (786)
T ss_pred             cceeccccccCCCCceehhhh---cccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccC--ce
Confidence            457788999999999999998   5556666667766544  2333456788999999999999999999999876  89


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|||+||+++|.|++++..   .+++++.++++++.||+.|+.|||..+   |+||||||+|+|||..+++||+|||+|.
T Consensus        87 lylvlEyv~gGELFdylv~---kG~l~e~eaa~ff~QIi~gv~yCH~~~---icHRDLKpENlLLd~~~nIKIADFGMAs  160 (786)
T KOG0588|consen   87 LYLVLEYVPGGELFDYLVR---KGPLPEREAAHFFRQILDGVSYCHAFN---ICHRDLKPENLLLDVKNNIKIADFGMAS  160 (786)
T ss_pred             EEEEEEecCCchhHHHHHh---hCCCCCHHHHHHHHHHHHHHHHHhhhc---ceeccCCchhhhhhcccCEeeeccceee
Confidence            9999999999999999954   357999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCC-CccCcccccccCChhhhhcCCCC-CcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPET-DISNSSVAAANLSVETLERGLLT-PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~s-~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .-..+ ...+.||.+.|.+||++.|..|. .++||||.|||||.||||+.||++.+.......++...            
T Consensus       161 Le~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~------------  228 (786)
T KOG0588|consen  161 LEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGV------------  228 (786)
T ss_pred             cccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCc------------
Confidence            76544 45678999999999999999985 78999999999999999999999877666555444221            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                            ...|.+++.++++|+.+||..||++|.|++||+++-
T Consensus       229 ------f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP  264 (786)
T KOG0588|consen  229 ------FEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHP  264 (786)
T ss_pred             ------ccCCCcCCHHHHHHHHHHhccCccccccHHHHhhCc
Confidence                  123678889999999999999999999999999864

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-42  Score=336.28  Aligned_cols=265  Identities=18%  Similarity=0.300  Sum_probs=207.1

Q ss_pred             CCCCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCC
Q 011995          159 TGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHP  236 (473)
Q Consensus       159 ~~~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~Hp  236 (473)
                      ....+.++.+++.     ......||+|++|.||+|.+.+.     .+++|+.....  .....+.|.+|+.+|.+++||
T Consensus         9 ~~~~~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~~~~-----~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   78 (283)
T PHA02988          9 INDIKCIESDDID-----KYTSVLIKENDQNSIYKGIFNNK-----EVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSN   78 (283)
T ss_pred             cCcceecCHHHcC-----CCCCeEEeeCCceEEEEEEECCE-----EEEEEeccccccccHHHHHHHHHHHHHHHhcCCC
Confidence            3455667777773     33336799999999999997443     33344333221  122246788999999999999


Q ss_pred             Ccccceeeeec--CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCC
Q 011995          237 NLCKLLGFHAR--DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTA  313 (473)
Q Consensus       237 nIv~l~g~~~~--~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~  313 (473)
                      |||+++|++.+  ++...+++||||+++|+|.+++..   ...+++.....++.+++.||.|||.. +   ++||||||+
T Consensus        79 nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~---~~Hrdlkp~  152 (283)
T PHA02988         79 NILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDK---EKDLSFKTKLDMAIDCCKGLYNLYKYTN---KPYKNLTSV  152 (283)
T ss_pred             CEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhh---CCCCChhHHHHHHHHHHHHHHHHHhcCC---CCCCcCChh
Confidence            99999999876  434678999999999999999954   34689999999999999999999985 6   889999999


Q ss_pred             ceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH
Q 011995          314 NIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER  391 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~  391 (473)
                      |||++.++.+||+|||++....... ....++..|+|||++.+  ..++.++|||||||++|||++|..||......+..
T Consensus       153 nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~  231 (283)
T PHA02988        153 SFLVTENYKLKIICHGLEKILSSPP-FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIY  231 (283)
T ss_pred             hEEECCCCcEEEcccchHhhhcccc-ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            9999999999999999987654322 34467889999999976  67999999999999999999999999876544332


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      ..+.      ...          ....++..++..+.+|+.+||+.||++|||+.+|++.|+.+.
T Consensus       232 ~~i~------~~~----------~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        232 DLII------NKN----------NSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             HHHH------hcC----------CCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            2211      000          011123345678999999999999999999999999998764

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.7e-42  Score=339.24  Aligned_cols=265  Identities=20%  Similarity=0.360  Sum_probs=202.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCC-------------eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA-------------STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL  241 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l  241 (473)
                      ++|...+.||+|+||.||+|.+.+..             .....+++|+............|.+|++++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            46888899999999999999865432             12234555555443344456789999999999999999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCC----------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCce
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRS----------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQA  305 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~----------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~i  305 (473)
                      ++++.+.  +..++||||+.+|+|.+++....                ....+++..+..++.||+.||.|||+.+   |
T Consensus        85 ~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i  159 (304)
T cd05096          85 LGVCVDE--DPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN---F  159 (304)
T ss_pred             EEEEecC--CceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC---c
Confidence            9999876  77999999999999999885421                1134788999999999999999999999   9


Q ss_pred             eecCCCCCceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc--CC
Q 011995          306 MYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT--GR  379 (473)
Q Consensus       306 vHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt--G~  379 (473)
                      +||||||+|||++.++.+||+|||+++.......    ....++..|+|||++.++.++.++|||||||++|||++  +.
T Consensus       160 vH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~  239 (304)
T cd05096         160 VHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKE  239 (304)
T ss_pred             cccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999976543322    22344678999999988889999999999999999986  56


Q ss_pred             CCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          380 KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       380 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .||...........+.   ........       ......+..++..+.+|+.+||+.||.+|||+.+|.+.|++
T Consensus       240 ~p~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         240 QPYGELTDEQVIENAG---EFFRDQGR-------QVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCCCcCCHHHHHHHHH---HHhhhccc-------cccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            7787654333221111   00000000       00001123455789999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-43  Score=323.07  Aligned_cols=238  Identities=16%  Similarity=0.236  Sum_probs=203.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||.|+||.|.+++.+.   ++..+|+|+.....  .-...+...+|..+|+.+.||+++++++-+.+.  ..
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~---~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~--~~  118 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKH---SGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDN--SN  118 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEcc---CCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccC--Ce
Confidence            456667999999999999998544   45566666654432  223346678899999999999999999888765  89


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +||||||++||.|..+|++   .++|++..+..+|.||+.||+|||+.+   |++|||||+|||||.+|.+||.|||+|+
T Consensus       119 lymvmeyv~GGElFS~Lrk---~~rF~e~~arFYAAeivlAleylH~~~---iiYRDLKPENiLlD~~G~iKitDFGFAK  192 (355)
T KOG0616|consen  119 LYMVMEYVPGGELFSYLRK---SGRFSEPHARFYAAEIVLALEYLHSLD---IIYRDLKPENLLLDQNGHIKITDFGFAK  192 (355)
T ss_pred             EEEEEeccCCccHHHHHHh---cCCCCchhHHHHHHHHHHHHHHHHhcC---eeeccCChHHeeeccCCcEEEEeccceE
Confidence            9999999999999999954   457999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... ..+.+||+.|+|||.++...|+.++|.|+|||++|||+.|.+||...++....+.|...               
T Consensus       193 ~v~~r-T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~---------------  256 (355)
T KOG0616|consen  193 RVSGR-TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEG---------------  256 (355)
T ss_pred             EecCc-EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhC---------------
Confidence            87554 66789999999999999999999999999999999999999999988876655444311               


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSER  442 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~R  442 (473)
                       .  -.||...+.++.+|+..+|+.|-.+|
T Consensus       257 -~--v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  257 -K--VKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             -c--ccCCcccCHHHHHHHHHHHhhhhHhh
Confidence             1  13577788999999999999999999

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-42  Score=348.76  Aligned_cols=243  Identities=19%  Similarity=0.275  Sum_probs=209.0

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ..++|...++||+|.||.|+++.+..+.   ..+|+|+.+...  ....++..+.|..|+... +||.++.|+..|.+. 
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~---e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~-  441 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTN---EYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTK-  441 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCC---cEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccC-
Confidence            3567888899999999999999976544   466676665442  556778889999998888 599999999999877 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       +++|+||||+.||++..+.    ....|++..+..++.+|+.||+|||+++   |||||||.+|||||.+|.+||+|||
T Consensus       442 -~~l~fvmey~~Ggdm~~~~----~~~~F~e~rarfyaAev~l~L~fLH~~~---IIYRDlKLdNiLLD~eGh~kiADFG  513 (694)
T KOG0694|consen  442 -EHLFFVMEYVAGGDLMHHI----HTDVFSEPRARFYAAEVVLGLQFLHENG---IIYRDLKLDNLLLDTEGHVKIADFG  513 (694)
T ss_pred             -CeEEEEEEecCCCcEEEEE----ecccccHHHHHHHHHHHHHHHHHHHhcC---ceeeecchhheEEcccCcEEecccc
Confidence             8999999999999965554    3346999999999999999999999999   9999999999999999999999999


Q ss_pred             CCccc--CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHI--PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~--~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      +++..  .....++.+||+.|||||++.+..|+.++|+|||||+||||+.|+.||.+.++.+..+-|....         
T Consensus       514 lcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~---------  584 (694)
T KOG0694|consen  514 LCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDE---------  584 (694)
T ss_pred             cccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCC---------
Confidence            99764  3445677899999999999999999999999999999999999999999988877666543211         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                               ..||..++.++.+++.++|.++|++|.-+
T Consensus       585 ---------~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  585 ---------VRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             ---------CCCCCcccHHHHHHHHHHhccCcccccCC
Confidence                     13577888999999999999999999866

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.1e-43  Score=314.31  Aligned_cols=251  Identities=19%  Similarity=0.254  Sum_probs=212.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|++++.||+|-||.||.|+.+.+.   -.+++||.-..  ...+...++.+|++|-+.|+||||+++|+||.++  .
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~---~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~--~   95 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSL---FIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDS--K   95 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCC---cEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheecc--c
Confidence            467888899999999999999965543   33444443322  1334457899999999999999999999999877  8


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..||++||...|+|...|... ....+++.....++.|+|.||.|+|..+   ||||||||+|+|++.++.+||+|||-+
T Consensus        96 riyLilEya~~gel~k~L~~~-~~~~f~e~~~a~Yi~q~A~Al~y~h~k~---VIhRdiKpenlLlg~~~~lkiAdfGws  171 (281)
T KOG0580|consen   96 RIYLILEYAPRGELYKDLQEG-RMKRFDEQRAATYIKQLANALLYCHLKR---VIHRDIKPENLLLGSAGELKIADFGWS  171 (281)
T ss_pred             eeEEEEEecCCchHHHHHHhc-ccccccccchhHHHHHHHHHHHHhccCC---cccCCCCHHHhccCCCCCeeccCCCce
Confidence            899999999999999999653 3556899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ...+.+...+.+||..|++||...+...+..+|+|++|++.||++.|.+||......+....+....             
T Consensus       172 V~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~-------------  238 (281)
T KOG0580|consen  172 VHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVD-------------  238 (281)
T ss_pred             eecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHcc-------------
Confidence            8877777778899999999999999999999999999999999999999998766444333332111             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           -.+|..++..+.++|.+|+.++|.+|.+..|+++.
T Consensus       239 -----~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  239 -----LKFPSTISGGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             -----ccCCcccChhHHHHHHHHhccCccccccHHHHhhh
Confidence                 12366788999999999999999999999999875

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-43  Score=373.49  Aligned_cols=259  Identities=23%  Similarity=0.410  Sum_probs=218.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +....+.||+|.||.||+|.+.+.......+.+++|.+..  +.+...+|.+|..+|+.++|||||+++|+|.+.  ...
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~--~~~  770 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDS--GPP  770 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCC--CCc
Confidence            3445588999999999999997765544456666666654  577788999999999999999999999999985  788


Q ss_pred             EEEEEeccCCChhhhhhcCC----CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          254 MLIYERLFHGSLDRLIYGRS----DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      +|++|||.+|+|..+|+...    ....+.....+.++.+||+|+.||++++   +|||||...|+||++...|||+|||
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~---fvHRDLAaRNCLL~~~r~VKIaDFG  847 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH---FVHRDLAARNCLLDERRVVKIADFG  847 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC---CcCcchhhhheeecccCcEEEcccc
Confidence            99999999999999997531    1456899999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCCccCccc----ccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccc
Q 011995          330 CAGHIPETDISNSSV----AAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       330 la~~~~~~~~~~~~~----t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      +|+.+...++....+    ...|||||.+..+.++.++|||||||++||++| |..||...+..+....+.      ..+
T Consensus       848 lArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~------~gg  921 (1025)
T KOG1095|consen  848 LARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVL------EGG  921 (1025)
T ss_pred             hhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHH------hCC
Confidence            999776655543322    368999999999999999999999999999998 999999887666543221      111


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                       ++          ..|..++..+.++|.+||+.+|++||++..|++.+..+.
T Consensus       922 -RL----------~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~  962 (1025)
T KOG1095|consen  922 -RL----------DPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAIS  962 (1025)
T ss_pred             -cc----------CCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhh
Confidence             11          237788899999999999999999999999999888654

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=7.7e-42  Score=329.46  Aligned_cols=257  Identities=20%  Similarity=0.329  Sum_probs=204.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|++.+.||+|+||.||+|.+.........++++.............+.+|+.++..++||||++++|++...  +..+
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~   82 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRG--NTMM   82 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecC--CCcE
Confidence            46888899999999999999875443344455555554433344456789999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..+..++.|++.||+|||+.+   ++||||||+|||++.++.++++|||.+...
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~i~~al~~lH~~~---iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          83 IVTEYMSNGALDSFLRKH--EGQLVAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             EEEEeCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            999999999999998643  346899999999999999999999999   999999999999999999999999987654


Q ss_pred             CCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....   ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+.       ++.     
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~-------~~~-----  225 (266)
T cd05064         158 KSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVE-------DGF-----  225 (266)
T ss_pred             cccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHH-------CCC-----
Confidence            22211   11234568999999999999999999999999999775 999998765443222211       100     


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                           ....+..++..+.+++.+||+.+|.+||++.+|++.|+++
T Consensus       226 -----~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         226 -----RLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             -----CCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence                 0011344567899999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-43  Score=337.99  Aligned_cols=256  Identities=20%  Similarity=0.261  Sum_probs=207.8

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--------Ch-----hhHhHHHHHHHHHhCCCCCc
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--------SQ-----GVKEFINDVNTLASLQHPNL  238 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----~~~~~~~Ei~~l~~l~HpnI  238 (473)
                      ...+.|++.+.||+|.||.|-+|.   +....+.+|+|+.....-        ..     -.+.+.+||.+|++++||||
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar---~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV  170 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLAR---DEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV  170 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEe---ecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence            456889999999999999999998   555566777776543311        11     12578899999999999999


Q ss_pred             ccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCC-CCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee
Q 011995          239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP-IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI  317 (473)
Q Consensus       239 v~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~-l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl  317 (473)
                      |+|+++..+...+.+|||+|||..|.+...=    ...+ +++.++.+++.+++.||+|||.++   ||||||||+|+||
T Consensus       171 V~LiEvLDDP~s~~~YlVley~s~G~v~w~p----~d~~els~~~Ar~ylrDvv~GLEYLH~Qg---iiHRDIKPsNLLl  243 (576)
T KOG0585|consen  171 VKLIEVLDDPESDKLYLVLEYCSKGEVKWCP----PDKPELSEQQARKYLRDVVLGLEYLHYQG---IIHRDIKPSNLLL  243 (576)
T ss_pred             eEEEEeecCcccCceEEEEEeccCCccccCC----CCcccccHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEE
Confidence            9999999888889999999999999875432    3334 999999999999999999999999   9999999999999


Q ss_pred             CCCCcEEEeccCCCcccCCC-------CccCcccccccCChhhhhcCC----CCCcCCchHHHHHHHHHHcCCCCCCCCC
Q 011995          318 DKDFSAKLSGYGCAGHIPET-------DISNSSVAAANLSVETLERGL----LTPKSNVWSFGIVLLELLTGRKNLDSRH  386 (473)
Q Consensus       318 ~~~~~vkl~DFGla~~~~~~-------~~~~~~~t~~y~aPE~~~~~~----~s~~sDvwSlGvvl~elltG~~p~~~~~  386 (473)
                      +++|.|||+|||.+..+...       ......||+.|||||.+.++.    .+.+.||||+||+||.|+.|+.||-+..
T Consensus       244 ~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~  323 (576)
T KOG0585|consen  244 SSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDF  323 (576)
T ss_pred             cCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccch
Confidence            99999999999999866322       234578999999999997743    3578999999999999999999998876


Q ss_pred             hHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          387 PKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ..+..+.|                ++..+.-....++.+++.+||.++|.+||++|.+..+|....-
T Consensus       324 ~~~l~~KI----------------vn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpw  374 (576)
T KOG0585|consen  324 ELELFDKI----------------VNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPW  374 (576)
T ss_pred             HHHHHHHH----------------hcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecce
Confidence            65544433                2222222222356789999999999999999999999977654

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=8e-42  Score=343.16  Aligned_cols=246  Identities=18%  Similarity=0.287  Sum_probs=190.8

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |+..+.||+|+||.||+|....+   ++.+++|+............+.+|+++++.++|+||+++++++...  +.+++|
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~lv  150 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPT---GRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHN--GEIQVL  150 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCC---CCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccC--CeEEEE
Confidence            44458999999999999986533   3455666654444444567889999999999999999999998765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++|+|.+..       .+.+..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++..+..
T Consensus       151 ~e~~~~~~L~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~  220 (353)
T PLN00034        151 LEFMDGGSLEGTH-------IADEQFLADVARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILAQ  220 (353)
T ss_pred             EecCCCCcccccc-------cCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEcccccceeccc
Confidence            9999999986533       3567788899999999999999999   99999999999999999999999999987643


Q ss_pred             CC--ccCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          337 TD--ISNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       337 ~~--~~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ..  .....++..|+|||++..     ...+.++|||||||++|||++|+.||...............          ..
T Consensus       221 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~----------~~  290 (353)
T PLN00034        221 TMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAI----------CM  290 (353)
T ss_pred             ccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHH----------hc
Confidence            32  234578899999998743     22456899999999999999999999743322111111100          00


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          ......+..++.++.+||.+||+.||++|||+.||++.
T Consensus       291 ----~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        291 ----SQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             ----cCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                00011233556789999999999999999999999975

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.8e-42  Score=341.05  Aligned_cols=245  Identities=18%  Similarity=0.236  Sum_probs=202.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|+....||+|+||.||+|+-   ..++..+|+|+.+...  ....++.++.|-.+|....+++||+||-.|.+.  
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarK---k~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~--  213 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARK---KDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDK--  213 (550)
T ss_pred             CcccchhheeeccccceeEEEEEE---ccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCC--
Confidence            357899999999999999999984   4466777777765432  344567889999999999999999998777665  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+||||||++||++-.+|..   ...|++..+..++.+++.||+-||+.|   +|||||||+|+|||..|++||+||||
T Consensus       214 ~~LYLiMEylPGGD~mTLL~~---~~~L~e~~arfYiaE~vlAI~~iH~~g---yIHRDIKPdNlLiD~~GHiKLSDFGL  287 (550)
T KOG0605|consen  214 EYLYLIMEYLPGGDMMTLLMR---KDTLTEDWARFYIAETVLAIESIHQLG---YIHRDIKPDNLLIDAKGHIKLSDFGL  287 (550)
T ss_pred             CeeEEEEEecCCccHHHHHHh---cCcCchHHHHHHHHHHHHHHHHHHHcC---cccccCChhheeecCCCCEeeccccc
Confidence            899999999999999999943   457999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCC----------------------CC---------------------------ccCcccccccCChhhhhcCCCCC
Q 011995          331 AGHIPE----------------------TD---------------------------ISNSSVAAANLSVETLERGLLTP  361 (473)
Q Consensus       331 a~~~~~----------------------~~---------------------------~~~~~~t~~y~aPE~~~~~~~s~  361 (473)
                      +.-+..                      .+                           ....+|||.|||||++.+..|+.
T Consensus       288 s~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~  367 (550)
T KOG0605|consen  288 STGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGK  367 (550)
T ss_pred             cchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCc
Confidence            842210                      00                           12356899999999999999999


Q ss_pred             cCCchHHHHHHHHHHcCCCCCCCCChHHHHhH-hhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCC
Q 011995          362 KSNVWSFGIVLLELLTGRKNLDSRHPKEERNL-VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS  440 (473)
Q Consensus       362 ~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~  440 (473)
                      .+|+||||||+||||.|.+||....+.+.-.. +.|...+...               -...++.++.+||.+|+. ||+
T Consensus       368 ~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP---------------~~~~~s~eA~DLI~rll~-d~~  431 (550)
T KOG0605|consen  368 ECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFP---------------EEVDLSDEAKDLITRLLC-DPE  431 (550)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCC---------------CcCcccHHHHHHHHHHhc-CHH
Confidence            99999999999999999999999888776543 3443221110               022345899999999999 999


Q ss_pred             CCCC
Q 011995          441 ERPT  444 (473)
Q Consensus       441 ~RPt  444 (473)
                      +|.-
T Consensus       432 ~RLG  435 (550)
T KOG0605|consen  432 NRLG  435 (550)
T ss_pred             HhcC
Confidence            9976

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-42  Score=349.09  Aligned_cols=262  Identities=22%  Similarity=0.391  Sum_probs=213.9

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeE-EEEEEEec--CCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKK-FEATVTRL--NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +-...++||+|+||.||+|++......... +|++..+.  ........+|.+|.++|+.++|||||++||++...  ..
T Consensus       158 ~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~--~P  235 (474)
T KOG0194|consen  158 DIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLE--EP  235 (474)
T ss_pred             CccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC--Cc
Confidence            334448999999999999998654332222 45555543  13456678999999999999999999999999876  88


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ++||||+|.||+|.++|....  ..++..++..++.++|.||+|||+++   +|||||...|+|++.++.+||+|||+++
T Consensus       236 l~ivmEl~~gGsL~~~L~k~~--~~v~~~ek~~~~~~AA~Gl~YLh~k~---~IHRDIAARNcL~~~~~~vKISDFGLs~  310 (474)
T KOG0194|consen  236 LMLVMELCNGGSLDDYLKKNK--KSLPTLEKLRFCYDAARGLEYLHSKN---CIHRDIAARNCLYSKKGVVKISDFGLSR  310 (474)
T ss_pred             cEEEEEecCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHhHHHHHHHCC---CcchhHhHHHheecCCCeEEeCcccccc
Confidence            999999999999999996543  36999999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCcc--CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          333 HIPETDIS--NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       333 ~~~~~~~~--~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....-...  .......|+|||.+..+.|+.++|||||||++||+++ |..||.+....+....+...            
T Consensus       311 ~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~------------  378 (474)
T KOG0194|consen  311 AGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKN------------  378 (474)
T ss_pred             CCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhc------------
Confidence            65422221  2235689999999999999999999999999999998 88999988776655444111            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                          ..+-..+...+.++..++.+||..||++||+|.++.+.|+.+.....
T Consensus       379 ----~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  379 ----GYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             ----CccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence                11112244667889999999999999999999999999999886655

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=6.3e-42  Score=346.53  Aligned_cols=260  Identities=19%  Similarity=0.319  Sum_probs=201.1

Q ss_pred             cccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|+..+.||+|+||.||+|++..  .......+++|+.+........+.+.+|+.+|..+ +|||||+++++|...  +
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~--~  112 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVG--G  112 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC--C
Confidence            457778999999999999997522  12233445555544333344456789999999999 899999999999766  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCC----------------------------------------------------------
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS----------------------------------------------------------  273 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~----------------------------------------------------------  273 (473)
                      ..++||||+++|+|.+++....                                                          
T Consensus       113 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (375)
T cd05104         113 PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSG  192 (375)
T ss_pred             cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccc
Confidence            8999999999999999986421                                                          


Q ss_pred             --------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc
Q 011995          274 --------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI  339 (473)
Q Consensus       274 --------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~  339 (473)
                                    ....+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++........
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  269 (375)
T cd05104         193 SYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIRNDSN  269 (375)
T ss_pred             eecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCchhhEEEECCCcEEEecCccceeccCccc
Confidence                          1125789999999999999999999999   99999999999999999999999999976643321


Q ss_pred             c----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          340 S----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       340 ~----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      .    ...++..|+|||++.+..++.++|||||||++|||++ |..||.........  ..+    +..+.         
T Consensus       270 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~--~~~----~~~~~---------  334 (375)
T cd05104         270 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKF--YKM----IKEGY---------  334 (375)
T ss_pred             ccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHH--HHH----HHhCc---------
Confidence            1    1233467999999999999999999999999999998 89999765432211  111    01110         


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                       ....+...+.++.+|+.+||+.||++||++.+|++.|++.
T Consensus       335 -~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         335 -RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             -cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence             0011223456899999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.6e-42  Score=324.70  Aligned_cols=277  Identities=17%  Similarity=0.206  Sum_probs=211.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh-hhHhHHHHHHHHHhCCCCC-cccceeeeecCC---
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ-GVKEFINDVNTLASLQHPN-LCKLLGFHARDG---  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ei~~l~~l~Hpn-Iv~l~g~~~~~~---  249 (473)
                      ..|...++||+|+||+||+|+.   ..+++.+++|..++....+ .-....+|+.+|+.++|+| ||.|++++....   
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~---~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~   87 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARS---KRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHR   87 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEE---ecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccc
Confidence            3455558899999999999994   4455777888888876533 3456789999999999999 999999998762   


Q ss_pred             -CCceEEEEEeccCCChhhhhhcCCCC-CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          250 -SDQRMLIYERLFHGSLDRLIYGRSDG-PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       250 -~~~~~lV~E~~~~gsL~~~l~~~~~~-~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                       ...++||+||++. +|.+++...... ..++...++.++.||+.||+|||+++   |+||||||.||||+.+|.+||+|
T Consensus        88 ~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~---IlHRDLKPQNlLi~~~G~lKlaD  163 (323)
T KOG0594|consen   88 GIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG---ILHRDLKPQNLLISSSGVLKLAD  163 (323)
T ss_pred             ccceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCcceEEECCCCcEeeec
Confidence             1278999999955 999999654321 35777899999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccC--CCCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          328 YGCAGHIP--ETDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       328 FGla~~~~--~~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      ||+|+...  ...+++.++|.+|.|||++.+. .|+...||||+|||+.||+++++.|.+..+.++...+-.....-...
T Consensus       164 FGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~  243 (323)
T KOG0594|consen  164 FGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEK  243 (323)
T ss_pred             cchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCcc
Confidence            99998764  3346777999999999999887 59999999999999999999999999987766554442111110000


Q ss_pred             cccccccccc----cCC-----CCC---HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhhcc
Q 011995          405 CRLSLIMDPQ----LKG-----RFP---LKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQESR  458 (473)
Q Consensus       405 ~~~~~~~~~~----l~~-----~~~---~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~~~  458 (473)
                      .+.....-+.    ...     .+.   .....+..+++.+||+.+|.+|.|+..++++  +..+...
T Consensus       244 ~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~  311 (323)
T KOG0594|consen  244 DWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPEK  311 (323)
T ss_pred             CCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccccc
Confidence            0000000000    000     011   1222578899999999999999999999987  6655443

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=4.7e-42  Score=347.25  Aligned_cols=261  Identities=21%  Similarity=0.324  Sum_probs=202.7

Q ss_pred             cccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|+..+.||+|+||.||+|....  .....+.+++|+............+.+|+++++.+ +|+|||+++++|...  +
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~--~  115 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHG--G  115 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCC--C
Confidence            467788999999999999998532  22233445555554433344456788999999999 899999999998766  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCC----------------------------------------------------------
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS----------------------------------------------------------  273 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~----------------------------------------------------------  273 (473)
                      ..++||||+++|+|.+++....                                                          
T Consensus       116 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (374)
T cd05106         116 PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSS  195 (374)
T ss_pred             CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccc
Confidence            8999999999999999885421                                                          


Q ss_pred             ---------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc----
Q 011995          274 ---------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS----  340 (473)
Q Consensus       274 ---------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~----  340 (473)
                               ....+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++.........    
T Consensus       196 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~  272 (374)
T cd05106         196 DSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN---CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKG  272 (374)
T ss_pred             cccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---EEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeecc
Confidence                     1135788999999999999999999999   999999999999999999999999998765332211    


Q ss_pred             CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCC
Q 011995          341 NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF  419 (473)
Q Consensus       341 ~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  419 (473)
                      ...++..|||||++.+..++.++|||||||++|||++ |..||.............      .          .......
T Consensus       273 ~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~------~----------~~~~~~~  336 (374)
T cd05106         273 NARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMV------K----------RGYQMSR  336 (374)
T ss_pred             CCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHH------H----------cccCccC
Confidence            1233467999999988889999999999999999997 999997654322111100      0          0001111


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       420 ~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      +...+.++.+++.+||+.||.+|||+.+|++.|+++.
T Consensus       337 ~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         337 PDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence            2234578999999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-42  Score=335.44  Aligned_cols=247  Identities=15%  Similarity=0.193  Sum_probs=201.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||+|....   ..+.+++|+.....  .......+.+|+++++.++||||+++++++.+.  +.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~   75 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRI---SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQ--RF   75 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcC---CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccC--Ce
Confidence            468888999999999999998543   33455566554332  223456688999999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +++||||+++|+|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~NIli~~~~~~kl~Dfg~~~  149 (291)
T cd05612          76 LYMLMEYVPGGELFSYLRN---SGRFSNSTGLFYASEIVCALEYLHSKE---IVYRDLKPENILLDKEGHIKLTDFGFAK  149 (291)
T ss_pred             EEEEEeCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEEecCcch
Confidence            9999999999999999854   346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... .....+++.|+|||++.+..++.++|||||||++|||++|..||...........+....              
T Consensus       150 ~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~--------------  214 (291)
T cd05612         150 KLRDR-TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGK--------------  214 (291)
T ss_pred             hccCC-cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--------------
Confidence            66432 234568899999999998889999999999999999999999998765544332221110              


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~  451 (473)
                          ..++...+..+.+|+.+||+.||.+|++     +.++++.
T Consensus       215 ----~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         215 ----LEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             ----cCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence                1123344678999999999999999995     8888765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=3.5e-41  Score=327.39  Aligned_cols=259  Identities=21%  Similarity=0.378  Sum_probs=207.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||+|......  ...+.++++.............|.+|+.++..++||||+++++++...  ..
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~--~~   82 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE--QP   82 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC--Cc
Confidence            36777799999999999999875433  233455555544333444566789999999999999999999998765  77


Q ss_pred             eEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      .+++|||+++|+|.+++.....             ...+++..+..++.|++.||.|||+.+   ++|+||||+|||++.
T Consensus        83 ~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nil~~~  159 (283)
T cd05048          83 TCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGE  159 (283)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccccceEEEcC
Confidence            8999999999999999865321             145889999999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHh
Q 011995          320 DFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLV  394 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~  394 (473)
                      ++.++|+|||++.......    .....++..|+|||.+.+..++.++|||||||++|||++ |..||.+....+....+
T Consensus       160 ~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i  239 (283)
T cd05048         160 GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMI  239 (283)
T ss_pred             CCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence            9999999999987653322    123345688999999988889999999999999999998 99999876554433222


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ...                 .....+..++.++.+|+.+||+.||.+||++.+|++.|+.+
T Consensus       240 ~~~-----------------~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         240 RSR-----------------QLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             HcC-----------------CcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            110                 01112445678999999999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.5e-41  Score=338.39  Aligned_cols=267  Identities=20%  Similarity=0.316  Sum_probs=202.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||++.....   ...+++++............+.+|+++++.++|+||+++++++.++  +..
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~---~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   78 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPS---GLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--GEI   78 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCC---CcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEEC--CEE
Confidence            36899999999999999999986533   3444555555443444557799999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++..   ...+++..+..++.|++.||.|||+.+  .|+|+||||+|||++.++.+||+|||++..
T Consensus        79 ~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  153 (333)
T cd06650          79 SICMEHMDGGSLDQVLKK---AGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (333)
T ss_pred             EEEEecCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchh
Confidence            999999999999999954   345889999999999999999999853  299999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh----hcccccccccc---
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK----WSRPFLADDCR---  406 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~----~~~~~~~~~~~---  406 (473)
                      ..........++..|+|||.+.+..++.++|||||||++|||++|+.||.............    ...........   
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (333)
T cd06650         154 LIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRP  233 (333)
T ss_pred             hhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCC
Confidence            64443444568899999999998889999999999999999999999997654433221110    00000000000   


Q ss_pred             ---------------------cccccccccCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          407 ---------------------LSLIMDPQLKGRFP-LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       407 ---------------------~~~~~~~~l~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                           ...+.... ...++ ...+.++.+|+.+||++||++|||+.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h  299 (333)
T cd06650         234 PGRPLSSYGPDSRPPMAIFELLDYIVNEP-PPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVH  299 (333)
T ss_pred             ccchhhhhcccccccccHHHHHHHHhcCC-CccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhC
Confidence                                 00000000 00011 1245678999999999999999999999753

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-42  Score=327.11  Aligned_cols=267  Identities=18%  Similarity=0.251  Sum_probs=210.8

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeec---C
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR---D  248 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~---~  248 (473)
                      ....|...+.||+|+||.|+.+....   +++.+|+|.+... ......++..+|+.+|+.++|+|||.+++++..   +
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~---t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~   96 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKR---TGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRD   96 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcC---CCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccc
Confidence            34556667899999999999998544   3455555544311 244556788999999999999999999998865   3


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ....+|+|+|+| ..+|...|..   +..|+...+..+++|+++||.|+|+.+   |+||||||+|+|++.+..+||+||
T Consensus        97 ~f~DvYiV~elM-etDL~~iik~---~~~L~d~H~q~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DF  169 (359)
T KOG0660|consen   97 KFNDVYLVFELM-ETDLHQIIKS---QQDLTDDHAQYFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDF  169 (359)
T ss_pred             ccceeEEehhHH-hhHHHHHHHc---CccccHHHHHHHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccc
Confidence            346799999999 5599999943   445999999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccC----CCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          329 GCAGHIP----ETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       329 Gla~~~~----~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+|+...    ....+..+.|.||.|||.+.. ..|+.+.||||.|||+.||++|++.|.+.+..++..++....+... 
T Consensus       170 GLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~-  248 (359)
T KOG0660|consen  170 GLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPS-  248 (359)
T ss_pred             cceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCC-
Confidence            9999885    344567788999999999855 4599999999999999999999999999888777776653332221 


Q ss_pred             ccccccccc----------c-----ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIMD----------P-----QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~----------~-----~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+..+..          +     .+...|+ ++++.+.+|+.+||..||.+|+|++|.|+.
T Consensus       249 ~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp-~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  249 EEDLQKIRSEKARPYIKSLPQIPKQPFSSIFP-NANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHHHHHhccHHHHHHHHhCCCCCCCCHHHHcC-CCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            111111111          0     0111123 677889999999999999999999999864

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.2e-41  Score=337.78  Aligned_cols=263  Identities=20%  Similarity=0.361  Sum_probs=205.3

Q ss_pred             cccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|++.+.||+|+||.||+|...+  +..+.+.+++|+.+........+.+..|+.++.++ +|+||++++++|...+ .
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~-~   85 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG-G   85 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC-C
Confidence            468888999999999999997533  22344566666554333334456788999999999 8999999999887553 6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC---------------------------------------------------------
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD---------------------------------------------------------  274 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~---------------------------------------------------------  274 (473)
                      .++++|||+++|+|.+++.....                                                         
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDEL  165 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHH
Confidence            78999999999999999854221                                                         


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC----ccCcccccccC
Q 011995          275 -GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANL  349 (473)
Q Consensus       275 -~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~  349 (473)
                       ...++|..+..++.||+.||+|||+.+   |+||||||+|||++.++.++|+|||++..+....    .....++..|+
T Consensus       166 ~~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~  242 (337)
T cd05054         166 YKEPLTLEDLISYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM  242 (337)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCcccc
Confidence             126899999999999999999999998   9999999999999999999999999998763322    12223457899


Q ss_pred             ChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHH
Q 011995          350 SVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVA  428 (473)
Q Consensus       350 aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  428 (473)
                      |||++.+..++.++|||||||++|||++ |..||.+....+...  .    .+...          .....+...+.++.
T Consensus       243 aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~--~----~~~~~----------~~~~~~~~~~~~~~  306 (337)
T cd05054         243 APESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFC--R----RLKEG----------TRMRAPEYATPEIY  306 (337)
T ss_pred             CcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHH--H----HHhcc----------CCCCCCccCCHHHH
Confidence            9999999999999999999999999997 999997643322110  0    00000          00111334557899


Q ss_pred             HHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          429 DIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       429 ~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      +++.+||+.+|++||++.||++.|+++..
T Consensus       307 ~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         307 SIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            99999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.1e-41  Score=338.02  Aligned_cols=241  Identities=18%  Similarity=0.248  Sum_probs=195.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      +.||+|+||.||++....   .++.+++|+.....  .......+.+|+.++.+++||||+++++++...  +..|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~--~~~~lv~e   75 (323)
T cd05571           1 KLLGKGTFGKVILVREKA---TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTH--DRLCFVME   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECC---CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcC--CEEEEEEe
Confidence            469999999999998544   34556666654321  233456778999999999999999999988766  78999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-  337 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-  337 (473)
                      |+++|+|.+++..   ...+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||+++..... 
T Consensus        76 ~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~  149 (323)
T cd05571          76 YANGGELFFHLSR---ERVFSEDRARFYGAEIVSALGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG  149 (323)
T ss_pred             CCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCC
Confidence            9999999999853   346899999999999999999999999   999999999999999999999999998754222 


Q ss_pred             -CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccC
Q 011995          338 -DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK  416 (473)
Q Consensus       338 -~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  416 (473)
                       ......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+...              +    
T Consensus       150 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~--------------~----  211 (323)
T cd05571         150 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME--------------E----  211 (323)
T ss_pred             CcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcC--------------C----
Confidence             223456899999999999989999999999999999999999999775543332222100              0    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          417 GRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       417 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                      ..++...+.++.+|+.+||+.||++||     ++.++++
T Consensus       212 ~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         212 IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             CCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            122445668899999999999999999     7999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1e-41  Score=339.08  Aligned_cols=248  Identities=14%  Similarity=0.217  Sum_probs=201.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+.....  .......+.+|+.++.+++||||+++++++..+  +
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~   91 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGT---GEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDE--N   91 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCC---CCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcC--C
Confidence            35788889999999999999986543   3455566554321  223456788999999999999999999998776  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..|+||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        92 ~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~  165 (329)
T PTZ00263         92 RVYFLLEFVVGGELFTHLRK---AGRFPNDVAKFYHAELVLAFEYLHSKD---IIYRDLKPENLLLDNKGHVKVTDFGFA  165 (329)
T ss_pred             EEEEEEcCCCCChHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEECCCCCEEEeeccCc
Confidence            89999999999999999854   346889999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ....... ....+++.|+|||++.+..++.++|||||||++|||++|..||.+.........+...              
T Consensus       166 ~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~--------------  230 (329)
T PTZ00263        166 KKVPDRT-FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAG--------------  230 (329)
T ss_pred             eEcCCCc-ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcC--------------
Confidence            8664332 3457889999999999988999999999999999999999999876544332222110              


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~  451 (473)
                        .  ..++...+..+.+|+.+||+.||.+|++     +.+++..
T Consensus       231 --~--~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        231 --R--LKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             --C--cCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence              0  0123335577899999999999999997     6777754

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2e-41  Score=330.04  Aligned_cols=253  Identities=19%  Similarity=0.259  Sum_probs=199.3

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .|+..+.||+|+||.||+|....+   .+.+++++.....  .......+.+|+.++..++|+||+++++++.++  +..
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~--~~~   75 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRAT---GKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETK--DAL   75 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecC---CceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccC--CeE
Confidence            367779999999999999986443   3445555443321  223345678999999999999999999988765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++... ....+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        76 ~lv~e~~~~g~L~~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nill~~~~~~kl~Dfg~~~~  151 (285)
T cd05631          76 CLVLTIMNGGDLKFHIYNM-GNPGFDEQRAIFYAAELCCGLEDLQRER---IVYRDLKPENILLDDRGHIRISDLGLAVQ  151 (285)
T ss_pred             EEEEEecCCCcHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeCCCcEE
Confidence            9999999999999888543 2346899999999999999999999999   99999999999999999999999999977


Q ss_pred             cCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... .....++..|+|||++.+..++.++|||||||++|||++|+.||...........+...            +. 
T Consensus       152 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~------------~~-  218 (285)
T cd05631         152 IPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRR------------VK-  218 (285)
T ss_pred             cCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHH------------hh-
Confidence            64332 23456889999999999999999999999999999999999999865432211111100            00 


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~  451 (473)
                       .....++...+.++.+|+.+||+.||.+||+     ++++++.
T Consensus       219 -~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         219 -EDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             -cccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence             0011234456788999999999999999997     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=5.1e-41  Score=332.10  Aligned_cols=260  Identities=20%  Similarity=0.342  Sum_probs=206.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+|+..+.||+|+||.||+|.+..+.. ....+++|+..........+++.+|+.+++.++||||++++|+|..   ...
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~---~~~   83 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT---STV   83 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC---CCc
Confidence            468888999999999999998754332 2334555554433344556789999999999999999999999875   457


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++|+||+++|+|.+++...  ...+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||+++.
T Consensus        84 ~~v~e~~~~g~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~LH~~~---iiH~dlkp~Nill~~~~~~kl~DfG~a~~  158 (316)
T cd05108          84 QLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (316)
T ss_pred             eeeeecCCCCCHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEecCCCcEEEcccccccc
Confidence            8999999999999999643  345889999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ......    .....+..|++||.+.+..++.++|||||||++|||++ |..||.+....+.......       ...  
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~-------~~~--  229 (316)
T cd05108         159 LGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEK-------GER--  229 (316)
T ss_pred             ccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhC-------CCC--
Confidence            643321    12233568999999999999999999999999999998 9999987554332221111       000  


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                              ...+..++.++.+++.+||..||.+||++.+++..|.++....
T Consensus       230 --------~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         230 --------LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             --------CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence                    0112234567899999999999999999999999999887544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.9e-41  Score=330.68  Aligned_cols=265  Identities=17%  Similarity=0.220  Sum_probs=200.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||+|....+   ...+++|+.+..........+.+|+.+++.++||||+++++++...  +..+
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~~   79 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLT---ENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTE--RCLT   79 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCC---CCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCC--CeEE
Confidence            5688889999999999999985433   3455566555443334456778999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++ +|.+++...  +..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++...
T Consensus        80 lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~  153 (288)
T cd07871          80 LVFEYLDS-DLKQYLDNC--GNLMSMHNVKIFMFQLLRGLSYCHKRK---ILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             EEEeCCCc-CHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEECcCcceeec
Confidence            99999974 899888542  345789999999999999999999999   999999999999999999999999998765


Q ss_pred             CCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc--------cccc
Q 011995          335 PET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP--------FLAD  403 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~--------~~~~  403 (473)
                      ...  ......+++.|+|||.+.+ ..++.++|||||||++|||++|++||.+....+....+.....        ....
T Consensus       154 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (288)
T cd07871         154 SVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITS  233 (288)
T ss_pred             cCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhcccc
Confidence            322  2234567899999999865 4589999999999999999999999987765544333211100        0000


Q ss_pred             ccccccccccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCRLSLIMDPQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~~~~~~~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .........+....    ......+.++.+|+.+||+.||.+|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         234 NEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             chhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            00000011111000    001234578899999999999999999999985

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=3.4e-41  Score=328.35  Aligned_cols=265  Identities=15%  Similarity=0.174  Sum_probs=200.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|++.+.||+|+||.||+|+...+   ...+++++..... .....+.+.+|+++++.++|+||+++++++..+  +..
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   75 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKET---KEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRR--GKL   75 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCC---CcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecC--CEE
Confidence            4688899999999999999996543   3344555544332 233456788999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+.++.+..+..   ....+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        76 ~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nill~~~~~~kl~Dfg~~~~  149 (287)
T cd07848          76 YLVFEYVEKNMLELLEE---MPNGVPPEKVRSYIYQLIKAIHWCHKND---IVHRDIKPENLLISHNDVLKLCDFGFARN  149 (287)
T ss_pred             EEEEecCCCCHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccCccc
Confidence            99999999877765542   2346899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc--------
Q 011995          334 IPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA--------  402 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~--------  402 (473)
                      .....   .....++..|+|||++.+..++.++|||||||++|||++|++||...........+......+.        
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (287)
T cd07848         150 LSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFY  229 (287)
T ss_pred             ccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhh
Confidence            64322   2334678999999999988899999999999999999999999987654433222211100000        


Q ss_pred             ccccccccccccc------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 DDCRLSLIMDPQL------KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~~~~~~~~~~~~l------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..........+..      ...+....+.++.+|+.+||+.||++|||++++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         230 SNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             ccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            0000000000000      01112235678999999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=3.7e-41  Score=342.77  Aligned_cols=263  Identities=17%  Similarity=0.283  Sum_probs=205.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~  250 (473)
                      .++|.+.+.||+|+||.||+|+.....  .....+++|+..........+.+.+|+++|.++. |||||++++++...  
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~--  113 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS--  113 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC--
Confidence            356788899999999999999864322  2334455555543334444577999999999996 99999999999765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCC---------------------------------------------------------
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRS---------------------------------------------------------  273 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~---------------------------------------------------------  273 (473)
                      +..||||||+++|+|.++|....                                                         
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE  193 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence            78999999999999999886421                                                         


Q ss_pred             ------------------------------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee
Q 011995          274 ------------------------------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI  317 (473)
Q Consensus       274 ------------------------------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl  317 (473)
                                                          ....+++..+..++.||+.||.|||+.+   |+||||||+|||+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dikp~Nill  270 (400)
T cd05105         194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN---CVHRDLAARNVLL  270 (400)
T ss_pred             hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHhEEE
Confidence                                                0134788899999999999999999999   9999999999999


Q ss_pred             CCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHh
Q 011995          318 DKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERN  392 (473)
Q Consensus       318 ~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~  392 (473)
                      +.++.+||+|||++........    ....++..|+|||.+.+..++.++|||||||++|||++ |..||..........
T Consensus       271 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~  350 (400)
T cd05105         271 AQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFY  350 (400)
T ss_pred             eCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHH
Confidence            9999999999999876543221    22345678999999998889999999999999999997 999997643322111


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      ..      +..+          .....+..++.++.+++.+||+.||++||++.+|.+.|+++.+
T Consensus       351 ~~------~~~~----------~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         351 NK------IKSG----------YRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             HH------HhcC----------CCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            00      0000          0011233456789999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-41  Score=336.42  Aligned_cols=254  Identities=17%  Similarity=0.201  Sum_probs=203.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||.||+|...+.   ...+++|+.....  .......+.+|++++..++||||+++++++...  +.
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~--~~   75 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDT---GEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDD--EY   75 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCC---CCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcC--CE
Confidence            4688899999999999999996543   3445555554321  223456788999999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .||||||+++|+|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~e~~~g~~L~~~l~~---~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~a~  149 (333)
T cd05600          76 LYLAMEYVPGGDFRTLLNN---LGVLSEDHARFYMAEMFEAVDALHELG---YIHRDLKPENFLIDASGHIKLTDFGLSK  149 (333)
T ss_pred             EEEEEeCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEEEeCcCCc
Confidence            9999999999999999953   346899999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSRPFLADDCRLSLIM  411 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  411 (473)
                      .... ......+++.|+|||++.+..++.++|||||||++|||++|..||......+....+. |... ..         
T Consensus       150 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~-~~---------  218 (333)
T cd05600         150 GIVT-YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKET-LQ---------  218 (333)
T ss_pred             cccc-ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhcccc-cc---------
Confidence            6543 3345578999999999998899999999999999999999999998766554333222 2110 00         


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .+.. .......+.++.+++.+||..+|.+||++.++++.
T Consensus       219 ~~~~-~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         219 RPVY-DDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             CCCC-CccccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            0000 00012456789999999999999999999999975

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-40  Score=320.56  Aligned_cols=257  Identities=20%  Similarity=0.363  Sum_probs=205.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||+|.+.........+++++............|.+|+.+++.++|+||+++++++...  +..+
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   81 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKS--RPVM   81 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecC--CceE
Confidence            57888899999999999999976543333444555544333444567789999999999999999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++..+..++.|++.||+|||+.+   |+|+||||+|||++.++.++|+|||++...
T Consensus        82 iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          82 IITEYMENGSLDKFLREN--DGKFTVGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             EEEEcCCCCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCCEEECccchhhcc
Confidence            999999999999999543  346899999999999999999999998   999999999999999999999999999876


Q ss_pred             CCCC--cc--CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          335 PETD--IS--NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       335 ~~~~--~~--~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....  ..  ....+..|+|||.+.+..++.++||||||+++|||++ |..||...........+..       ..    
T Consensus       157 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~-------~~----  225 (266)
T cd05033         157 EDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVED-------GY----  225 (266)
T ss_pred             cccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHc-------CC----
Confidence            4211  11  1233568999999998889999999999999999998 9999976543332221110       00    


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                            ....+..++..+.+++.+||+.+|++||++.+|++.|+++
T Consensus       226 ------~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         226 ------RLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                  0011234457889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=4.3e-42  Score=326.53  Aligned_cols=250  Identities=15%  Similarity=0.250  Sum_probs=208.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|++.+.||+|+||.|-+|.   ....++.++++.++..  .+++..-.+.+||+||+.|+||||+.+|++|...  
T Consensus        51 lkHRyE~~etLGkGTYGKVk~A~---e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENk--  125 (668)
T KOG0611|consen   51 LKHRYEITETLGKGTYGKVKLAY---EHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENK--  125 (668)
T ss_pred             hhhHHHHHHHhcCCcccceeehh---hccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCC--
Confidence            34678888999999999999997   4345556666655543  2566677899999999999999999999999765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+.|||||..+|.|+|++..   .+.|++.++..+++||..|+.|+|.++   ++|||||.+|||||.++++||+||||
T Consensus       126 dKIvivMEYaS~GeLYDYiSe---r~~LsErEaRhfFRQIvSAVhYCHknr---VvHRDLKLENILLD~N~NiKIADFGL  199 (668)
T KOG0611|consen  126 DKIVIVMEYASGGELYDYISE---RGSLSEREARHFFRQIVSAVHYCHKNR---VVHRDLKLENILLDQNNNIKIADFGL  199 (668)
T ss_pred             ceEEEEEEecCCccHHHHHHH---hccccHHHHHHHHHHHHHHHHHHhhcc---ceecccchhheeecCCCCeeeeccch
Confidence            899999999999999999944   457999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC-ccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPETD-ISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~~-~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +..+.... ..+++|++-|.+||++.+..| ++.+|.|||||+||-|+.|..||++.+-......+...           
T Consensus       200 SNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~G-----------  268 (668)
T KOG0611|consen  200 SNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRG-----------  268 (668)
T ss_pred             hhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcc-----------
Confidence            98876554 467899999999999999887 58999999999999999999999987544332222111           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                           ..   +....+.++.-||+.||..+|++|.|+.+|...-
T Consensus       269 -----aY---rEP~~PSdA~gLIRwmLmVNP~RRATieDiAsHW  304 (668)
T KOG0611|consen  269 -----AY---REPETPSDASGLIRWMLMVNPERRATIEDIASHW  304 (668)
T ss_pred             -----cc---cCCCCCchHHHHHHHHHhcCcccchhHHHHhhhh
Confidence                 00   0123346678899999999999999999997653

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-42  Score=324.84  Aligned_cols=270  Identities=19%  Similarity=0.239  Sum_probs=203.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC---
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD---  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~---  251 (473)
                      -.|...+++|+|+||+||+|.+...   ...+|+|..--  ..   +.--+|+++|+.+.|||||+|.-+|......   
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~---~~~vAIKKv~~--d~---r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~   95 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRET---EEEVAIKKVLQ--DK---RYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEV   95 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCC---CceeEEEEecC--CC---CcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchh
Confidence            3577779999999999999998765   34444443321  11   2223799999999999999999887754433   


Q ss_pred             ceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEeccC
Q 011995          252 QRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYG  329 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~DFG  329 (473)
                      +..||||||+. +|.+.++.. ..+..++...++-++.||.+||.|||..+   |+||||||.|+|+|.+ |.+||||||
T Consensus        96 ~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~---IcHRDIKPqNlLvD~~tg~LKicDFG  171 (364)
T KOG0658|consen   96 YLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG---ICHRDIKPQNLLVDPDTGVLKICDFG  171 (364)
T ss_pred             HHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC---cccCCCChheEEEcCCCCeEEeccCC
Confidence            67799999977 999988632 12456888889999999999999999998   9999999999999976 999999999


Q ss_pred             CCcccCCCCcc-CcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHIPETDIS-NSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~~~~~-~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .|+.+..+..+ +...|..|.|||.+.+.. |+.+.||||.|||+.||+-|++.|.+....++...+-.....-.++ .+
T Consensus       172 SAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e-~I  250 (364)
T KOG0658|consen  172 SAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTRE-DI  250 (364)
T ss_pred             cceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHH-HH
Confidence            99988655443 446789999999998764 9999999999999999999999999987766554442111111100 00


Q ss_pred             c-------cccccccCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhhc
Q 011995          408 S-------LIMDPQLKG-----RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQES  457 (473)
Q Consensus       408 ~-------~~~~~~l~~-----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~~  457 (473)
                      .       ....+.+..     -+....+.++.+|+.++|+.+|.+|.++.|++..  ++++..
T Consensus       251 ~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~  314 (364)
T KOG0658|consen  251 KSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRD  314 (364)
T ss_pred             hhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhC
Confidence            0       111122211     1345677899999999999999999999999853  444443

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=3.5e-41  Score=336.51  Aligned_cols=249  Identities=15%  Similarity=0.179  Sum_probs=201.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|.+.+..  ...+++++....  ........+.+|+.++..++||||+++++++.+.  +
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~--~  104 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNED--FPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDE--S  104 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCC--CeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeC--C
Confidence            346888899999999999999864432  234445544322  1233456788999999999999999999999776  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..|+||||+.+|+|.+++..   ...+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++
T Consensus       105 ~~~lv~Ey~~~g~L~~~i~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~ikL~DFG~a  178 (340)
T PTZ00426        105 YLYLVLEFVIGGEFFTFLRR---NKRFPNDVGCFYAAQIVLIFEYLQSLN---IVYRDLKPENLLLDKDGFIKMTDFGFA  178 (340)
T ss_pred             EEEEEEeCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEecCCCC
Confidence            89999999999999999954   346899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..... ......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+...              
T Consensus       179 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~--------------  243 (340)
T PTZ00426        179 KVVDT-RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEG--------------  243 (340)
T ss_pred             eecCC-CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcC--------------
Confidence            76643 234457899999999999888999999999999999999999999876544322222100              


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                        .  ..++...+..+.+++.+||+.||.+|+     +++++++.
T Consensus       244 --~--~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        244 --I--IYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             --C--CCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence              0  012344567789999999999999995     89988765

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=2.3e-40  Score=318.41  Aligned_cols=253  Identities=18%  Similarity=0.321  Sum_probs=203.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|...+.||+|+||.||+|.+.+..   +.+++++  ..........+.+|+++++.++|+||+++++++..+  +..+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~---~~~~~K~--~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   78 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYS---LTVAVKT--LKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFY   78 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCC---ceEEEEE--ecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCC--CCcE
Confidence            35777799999999999999875432   3333433  333444567889999999999999999999998765  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..++.++.|++.||+|||+.+   ++||||||+|||++.++.+||+|||++...
T Consensus        79 lv~e~~~~~~L~~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~df~~~~~~  154 (263)
T cd05052          79 IITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLM  154 (263)
T ss_pred             EEEEeCCCCcHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCcEEeCCCcccccc
Confidence            999999999999998653 2446899999999999999999999998   999999999999999999999999998776


Q ss_pred             CCCCccC---cccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDISN---SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~~---~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .......   ...+..|+|||.+.+..++.++|||||||++|||++ |..||...........+..              
T Consensus       155 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~--------------  220 (263)
T cd05052         155 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK--------------  220 (263)
T ss_pred             ccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHC--------------
Confidence            4432221   223567999999998899999999999999999998 9999987554332222110              


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                         ......+..++..+.+++.+||..||++||++.++++.|+.+
T Consensus       221 ---~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         221 ---GYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             ---CCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence               011122344568899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=3.1e-41  Score=324.17  Aligned_cols=250  Identities=28%  Similarity=0.492  Sum_probs=194.7

Q ss_pred             CcceeecCCceEEEEEEC-CCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          180 DRCISEGLSSVMYRASFG-DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      .+.||.|.||.||+|.+. ........+++++..........+.|.+|++++++++||||++++|++...  +..++|||
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~--~~~~lv~e   81 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIEN--EPLFLVME   81 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESS--SSEEEEEE
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccc--cccccccc
Confidence            478999999999999988 333444555555553333444578999999999999999999999999854  66999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD  338 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~  338 (473)
                      |+++|+|.++|... ....+++..+..|+.||+.||.|||+++   ++|+||+++|||++.++.+||+|||++.......
T Consensus        82 ~~~~g~L~~~L~~~-~~~~~~~~~~~~i~~~i~~~l~~Lh~~~---iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~  157 (259)
T PF07714_consen   82 YCPGGSLDDYLKSK-NKEPLSEQQRLSIAIQIAEALSYLHSNN---IIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKS  157 (259)
T ss_dssp             --TTEBHHHHHHHT-CTTTSBHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEEETTTEEEEESTTTGEETTTSS
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            99999999999765 2456999999999999999999999998   9999999999999999999999999997763221


Q ss_pred             c----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          339 I----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       339 ~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      .    ........|+|||.+.+..++.++||||||+++|||++ |+.||......+....+.....              
T Consensus       158 ~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~--------------  223 (259)
T PF07714_consen  158 KYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQR--------------  223 (259)
T ss_dssp             SEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEE--------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            1    22345678999999999889999999999999999999 7899987655443222211110              


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                         ...+..++..+.+++.+||..||.+|||+.+|++.|
T Consensus       224 ---~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  224 ---LPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ---TTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ---ceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence               112334567899999999999999999999999986

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.4e-41  Score=335.30  Aligned_cols=252  Identities=21%  Similarity=0.275  Sum_probs=215.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.+|+|+||.++..+..   ...+.+.+|.+++.. +....+..++|+.++++++|||||.+.+.|..+  +.
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk---~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~--~~   77 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHK---SDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEED--GQ   77 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhc---cCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcC--Cc
Confidence            357888899999999999999743   334566677777654 445556789999999999999999999999877  55


Q ss_pred             -eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          253 -RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 -~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                       ++|||+||+||+|.+.|.... +.-+++..+..|+.|++.|+.|||+.+   |+|||||+.||+++.++.|||+|||+|
T Consensus        78 ~l~Ivm~Y~eGg~l~~~i~~~k-~~~f~E~~i~~~~~Q~~~av~ylH~~~---iLHRDlK~~Nifltk~~~VkLgDfGla  153 (426)
T KOG0589|consen   78 LLCIVMEYCEGGDLAQLIKEQK-GVLFPEERILKWFVQILLAVNYLHENR---VLHRDLKCANIFLTKDKKVKLGDFGLA  153 (426)
T ss_pred             eEEEEEeecCCCCHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHhhh---hhcccchhhhhhccccCceeecchhhh
Confidence             999999999999999997653 677999999999999999999999888   999999999999999999999999999


Q ss_pred             cccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +......  ..+..||+.||+||.+.+..|+.++|||||||++|||++-+++|...+.......+...            
T Consensus       154 K~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~------------  221 (426)
T KOG0589|consen  154 KILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRG------------  221 (426)
T ss_pred             hhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhc------------
Confidence            9987664  45678999999999999999999999999999999999999999887655543322211            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           .....+...+.++..+|..||..+|..||++.++|..
T Consensus       222 -----~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  222 -----LYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             -----cCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence                 1123366778999999999999999999999999976

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-40  Score=375.30  Aligned_cols=267  Identities=26%  Similarity=0.464  Sum_probs=203.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ...|...+.||+|+||.||+|....+.   +.+++|  .+....   .....|++++++++|||||+++|+|.+.  +..
T Consensus       689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~---~~vavK--~~~~~~---~~~~~~~~~l~~l~HpnIv~~~~~~~~~--~~~  758 (968)
T PLN00113        689 LSSLKEENVISRGKKGASYKGKSIKNG---MQFVVK--EINDVN---SIPSSEIADMGKLQHPNIVKLIGLCRSE--KGA  758 (968)
T ss_pred             HhhCCcccEEccCCCeeEEEEEECCCC---cEEEEE--EccCCc---cccHHHHHHHhhCCCCCcceEEEEEEcC--CCC
Confidence            345777889999999999999864332   333344  332211   1223568999999999999999999876  678


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+||||+++|+|.++++      .++|..+..++.||+.||+|||..+.++|+||||||+||+++.++..++. ||.+..
T Consensus       759 ~lv~Ey~~~g~L~~~l~------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~  831 (968)
T PLN00113        759 YLIHEYIEGKNLSEVLR------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGL  831 (968)
T ss_pred             EEEEeCCCCCcHHHHHh------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccc
Confidence            99999999999999993      28999999999999999999996644459999999999999999888875 666544


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ....  ....++..|||||++.+..++.++|||||||++|||+||+.||..... .....+.|.+.... ......+.++
T Consensus       832 ~~~~--~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~  907 (968)
T PLN00113        832 LCTD--TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFG-VHGSIVEWARYCYS-DCHLDMWIDP  907 (968)
T ss_pred             cccC--CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccC-CCCcHHHHHHHhcC-ccchhheeCc
Confidence            3221  233678899999999998999999999999999999999999954322 12234445443222 2233445555


Q ss_pred             ccCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          414 QLKGR--FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       414 ~l~~~--~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .+...  .+.....++.+++.+||+.||++||||.||++.|+++....++
T Consensus       908 ~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~~~  957 (968)
T PLN00113        908 SIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSSSS  957 (968)
T ss_pred             cccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccccc
Confidence            55332  3445667888999999999999999999999999998664443

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.5e-40  Score=321.28  Aligned_cols=259  Identities=19%  Similarity=0.307  Sum_probs=203.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|.+..+.. ....++++............++..|+.++.++.||||+++++++..   ...
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~---~~~   83 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG---ASL   83 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC---Ccc
Confidence            356777999999999999998754322 2334445444333333445678889999999999999999998743   567


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++++||+++|+|.+++...  ...+++..+..++.||+.||.|||+++   ++||||||+|||++.++.+||+|||+++.
T Consensus        84 ~~i~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          84 QLVTQLSPLGSLLDHVRQH--RDSLDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADL  158 (279)
T ss_pred             EEEEEeCCCCcHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEEcCCcccee
Confidence            8999999999999999643  346899999999999999999999999   99999999999999999999999999976


Q ss_pred             cCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .....    .....++..|++||.+.++.++.++|||||||++|||++ |..||.+........++.-       +... 
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~-------~~~~-  230 (279)
T cd05111         159 LYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEK-------GERL-  230 (279)
T ss_pred             ccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHC-------CCcC-
Confidence            54322    122345678999999998899999999999999999998 9999987655443332221       0000 


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                               ..+..+..++.+++.+||..||++|||+.|+++.|..+...
T Consensus       231 ---------~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         231 ---------AQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             ---------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence                     00122346788999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=6.6e-41  Score=333.12  Aligned_cols=242  Identities=17%  Similarity=0.243  Sum_probs=195.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      +.||+|+||.||++....   ..+.+++|+....  ........+.+|+.+++.++||||+++++++...  +..++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~lv~E   75 (328)
T cd05593           1 KLLGKGTFGKVILVREKA---SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTK--DRLCFVME   75 (328)
T ss_pred             CeeeeCCCEEEEEEEECC---CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcC--CEEEEEEe
Confidence            469999999999998543   3445556655432  1234456788999999999999999999988765  78999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-  337 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-  337 (473)
                      |+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++...... 
T Consensus        76 y~~~g~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~  149 (328)
T cd05593          76 YVNGGELFFHLSR---ERVFSEDRTRFYGAEIVSALDYLHSGK---IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDA  149 (328)
T ss_pred             CCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeEECCCCcEEEecCcCCccCCCcc
Confidence            9999999988843   346899999999999999999999999   999999999999999999999999998754322 


Q ss_pred             -CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccC
Q 011995          338 -DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK  416 (473)
Q Consensus       338 -~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  416 (473)
                       ......+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+...              +    
T Consensus       150 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~--------------~----  211 (328)
T cd05593         150 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME--------------D----  211 (328)
T ss_pred             cccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccC--------------C----
Confidence             223456899999999999888999999999999999999999999765543322222110              0    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          417 GRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       417 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                      ..++...+.++.+|+.+||+.||.+|+     ++.++++.
T Consensus       212 ~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         212 IKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             ccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            112445567899999999999999997     89999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.7e-40  Score=322.87  Aligned_cols=270  Identities=22%  Similarity=0.325  Sum_probs=204.1

Q ss_pred             ccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          178 FSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ...+.||+|+||+||++.+.. .......+++|+............+.+|+++++.++||||+++++++........++|
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   86 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLI   86 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEE
Confidence            777999999999999876532 1223445556655443333456778899999999999999999999876544678999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++++|.+++..    ..+++..+..++.|++.||.|||+++   |+||||||+|||++.++.++|+|||++.....
T Consensus        87 ~e~~~~~~l~~~~~~----~~l~~~~~~~i~~~l~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  159 (283)
T cd05080          87 MEYVPLGSLRDYLPK----HKLNLAQLLLFAQQICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  159 (283)
T ss_pred             ecCCCCCCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccChheEEEcCCCcEEEeecccccccCC
Confidence            999999999999843    24999999999999999999999999   99999999999999999999999999876643


Q ss_pred             CCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          337 TDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       337 ~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ...     ....++..|++||.+.+..++.++|||||||++|||++|..||........ ....+..... ....+....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~  237 (283)
T cd05080         160 GHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFE-EMIGPKQGQM-TVVRLIELL  237 (283)
T ss_pred             cchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhh-hhhccccccc-chhhhhhhh
Confidence            221     122345679999999888899999999999999999999999865432211 1111111000 000111111


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      +.......+...+..+.+++.+||+.||++|||+.+|++.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         238 ERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            111112224455688999999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.7e-40  Score=321.85  Aligned_cols=260  Identities=20%  Similarity=0.348  Sum_probs=203.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|+..+.||+|+||.||+|.+....  .....+++++...........++.+|+.+++.++|+||+++++++...  
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~--   81 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG--   81 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--
Confidence            4578999999999999999999865321  223445555443322333456788999999999999999999998765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCC-------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcE
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSD-------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      ...++||||+++|+|.+++.....       ...+++..+..++.|++.||.|||+.+   ++|+||||+|||++.++.+
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~vH~dlkp~Nil~~~~~~~  158 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTV  158 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCcchheEEEcCCCCE
Confidence            789999999999999999864321       234688899999999999999999998   9999999999999999999


Q ss_pred             EEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcc
Q 011995          324 KLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       324 kl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +|+|||++........    ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+....
T Consensus       159 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~  238 (277)
T cd05062         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGG  238 (277)
T ss_pred             EECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC
Confidence            9999999876543322    12234678999999998889999999999999999999 789997765433222211000


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                                      . ...+..++..+.+++.+||+.||++|||+.|+++.|++
T Consensus       239 ----------------~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         239 ----------------L-LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             ----------------c-CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence                            0 01133445789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.6e-40  Score=322.03  Aligned_cols=258  Identities=21%  Similarity=0.376  Sum_probs=205.2

Q ss_pred             cccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|.+.+.||+|+||.||+|...+.  ....+.+++|+............+.+|+++|..++|+||+++++++...  ..
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~   82 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEG--DP   82 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecC--CC
Confidence            4577779999999999999986543  2233445555544333333567899999999999999999999998876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRS-----------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                      .++||||+++++|.+++....           ....+++..+..++.|++.||.|||+++   ++||||||+|||++.++
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~  159 (280)
T cd05049          83 PIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH---FVHRDLATRNCLVGYDL  159 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eeccccccceEEEcCCC
Confidence            999999999999999996532           1245789999999999999999999999   99999999999999999


Q ss_pred             cEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhh
Q 011995          322 SAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~  396 (473)
                      .+||+|||++........    ....++..|+|||++.+..++.++|||||||++|||++ |..||...........+..
T Consensus       160 ~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~  239 (280)
T cd05049         160 VVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQ  239 (280)
T ss_pred             eEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc
Confidence            999999999876533321    22234678999999999999999999999999999998 9999976654433222210


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .                 .....+...+..+.+++.+||+.||++||++.||++.|++
T Consensus       240 ~-----------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         240 G-----------------RLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             C-----------------CcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            0                 0001123456789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-41  Score=331.68  Aligned_cols=239  Identities=18%  Similarity=0.206  Sum_probs=192.5

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||+|+||.||+|...++   .+.+++|+....  ........+.+|+.++.+++||||+++++++...  +..++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~---~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRDT---QRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSP--EKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecC--CeEEEEEcCC
Confidence            79999999999986543   345556655432  1334456788999999999999999999988765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC--C
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET--D  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~--~  338 (473)
                      ++|+|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++......  .
T Consensus        76 ~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  149 (312)
T cd05585          76 NGGELFHHLQR---EGRFDLSRARFYTAELLCALENLHKFN---VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDK  149 (312)
T ss_pred             CCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCc
Confidence            99999999854   346899999999999999999999999   999999999999999999999999998754322  2


Q ss_pred             ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCC
Q 011995          339 ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR  418 (473)
Q Consensus       339 ~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (473)
                      .....+|+.|+|||++.+..++.++|||||||++|||++|..||...........+..      .            ...
T Consensus       150 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~------~------------~~~  211 (312)
T cd05585         150 TNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQ------E------------PLR  211 (312)
T ss_pred             cccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHc------C------------CCC
Confidence            2345689999999999998999999999999999999999999987654332221110      0            012


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCC---HHHHHH
Q 011995          419 FPLKAARTVADIALRCLQKEPSERPT---MRSIFE  450 (473)
Q Consensus       419 ~~~~~~~~l~~li~~cl~~dP~~RPt---~~eil~  450 (473)
                      ++...+.++.+++.+||..||.+||+   +.+++.
T Consensus       212 ~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         212 FPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             CCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence            34456688999999999999999985   566654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=3.3e-40  Score=322.32  Aligned_cols=263  Identities=22%  Similarity=0.372  Sum_probs=205.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+|...+.||+|+||.||+|...+.........++++.... .....+.+.+|++++++++|+||+++++++...  +..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   82 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDG--DPL   82 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccC--Cce
Confidence            45777899999999999999864432222222234444432 233346789999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ++||||+++++|.+++....             ....+++..++.++.||+.||+|||+++   |+||||||+|||++.+
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nil~~~~  159 (291)
T cd05094          83 IMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH---FVHRDLATRNCLVGAN  159 (291)
T ss_pred             EEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccC
Confidence            99999999999999996532             1235899999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          321 FSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      +.++|+|||++........    ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+.
T Consensus       160 ~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~  239 (291)
T cd05094         160 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECIT  239 (291)
T ss_pred             CcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh
Confidence            9999999999876543321    22345678999999998889999999999999999998 999997765443222111


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      .       ...          ...+...+..+.+++.+||+.||.+||++.+|++.|+++.+..
T Consensus       240 ~-------~~~----------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~~  286 (291)
T cd05094         240 Q-------GRV----------LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKAT  286 (291)
T ss_pred             C-------CCC----------CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhhc
Confidence            0       000          0112234578999999999999999999999999999986643

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.4e-40  Score=317.66  Aligned_cols=252  Identities=21%  Similarity=0.374  Sum_probs=201.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||+|...++.    .  ++++.........+.+.+|+.+++.++|+||+++++++...  +..+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~----~--v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   77 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNST----K--VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKE--EPIY   77 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCc----e--EEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--CCcE
Confidence            57888899999999999999865442    2  33333333344467899999999999999999999988665  7789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++... ....+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        78 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~  153 (261)
T cd05072          78 IITEYMAKGSLLDFLKSD-EGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVI  153 (261)
T ss_pred             EEEecCCCCcHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEecCCCcEEECCCccceec
Confidence            999999999999998653 3456899999999999999999999998   999999999999999999999999999876


Q ss_pred             CCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....   ....++..|+|||++.+..++.++|||||||++|||++ |..||...........+...       ..    
T Consensus       154 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~-------~~----  222 (261)
T cd05072         154 EDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRG-------YR----  222 (261)
T ss_pred             CCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcC-------CC----
Confidence            43321   12234567999999988889999999999999999998 99999765543322221100       00    


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                        .    .....++.++.+++.+||..+|++||++.++++.|+++
T Consensus       223 --~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         223 --M----PRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             --C----CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence              0    01123457789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=3e-40  Score=323.70  Aligned_cols=262  Identities=19%  Similarity=0.309  Sum_probs=204.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|++.+.||+|+||.||+|...++... ..++++...........+.+.+|++++.++ +||||+++++++...  +..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~-~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~--~~~   78 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLK-MNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENR--GYL   78 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCc-ceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccC--Ccc
Confidence            5788889999999999999987654321 122333333222334456789999999999 799999999998765  679


Q ss_pred             EEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ++||||+++|+|.+++....             ....+++..+..++.|++.||+|||+++   |+||||||+|||++.+
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~  155 (297)
T cd05089          79 YIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ---FIHRDLAARNVLVGEN  155 (297)
T ss_pred             eEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCcCCcceEEECCC
Confidence            99999999999999996432             1235889999999999999999999998   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcc
Q 011995          321 FSAKLSGYGCAGHIPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +.+||+|||++........ .....+..|+|||++.+..++.++|||||||++|||++ |..||...........+..  
T Consensus       156 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~--  233 (297)
T cd05089         156 LASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQ--  233 (297)
T ss_pred             CeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhc--
Confidence            9999999999864322111 11223457999999988889999999999999999997 9999987654432221110  


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                                     ......+..++..+.+|+.+||+.+|.+||++.++++.|+.+...+
T Consensus       234 ---------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         234 ---------------GYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             ---------------CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence                           0011123345678999999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.4e-40  Score=325.39  Aligned_cols=263  Identities=21%  Similarity=0.376  Sum_probs=205.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|++.+.||+|+||.||+|.+.++.   ..+.++++...  ........+.+|++++.++ +|+||+++++++..+  
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~---~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~--   80 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDG---LRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR--   80 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCC---ceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCC--
Confidence            467888899999999999999875432   22223333332  2344567889999999999 899999999998765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI  317 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl  317 (473)
                      +..++||||+++|+|.+++....             ....+++..++.++.|++.||+|||+.+   |+||||||+|||+
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dlkp~Nili  157 (303)
T cd05088          81 GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILV  157 (303)
T ss_pred             CCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEe
Confidence            78999999999999999996432             1236899999999999999999999999   9999999999999


Q ss_pred             CCCCcEEEeccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          318 DKDFSAKLSGYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       318 ~~~~~vkl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      +.++.+||+|||++....... ......+..|+|||.+.+..++.++|||||||++|||+| |..||......+....+.
T Consensus       158 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~  237 (303)
T cd05088         158 GENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP  237 (303)
T ss_pred             cCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHh
Confidence            999999999999986432111 111233567999999988889999999999999999998 999997654433222111


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .       .          .....+...+..+.+|+.+||+.+|.+||++.++++.|+++...+..
T Consensus       238 ~-------~----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~~  286 (303)
T cd05088         238 Q-------G----------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT  286 (303)
T ss_pred             c-------C----------CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhhh
Confidence            0       0          00011233457789999999999999999999999999988766654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.4e-40  Score=316.91  Aligned_cols=249  Identities=18%  Similarity=0.351  Sum_probs=198.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||++.+.+..    .++++  ...........+.+|+.++++++||||+++++++...  +..+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~----~~a~K--~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQI----KVAIK--AINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQ--KPLY   75 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCc----eEEEE--ecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccC--CCEE
Confidence            45777899999999999999875432    23333  3333333456789999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..+..++.|++.||.|||+++   |+|+||||+||+++.++.+||+|||++...
T Consensus        76 iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~  150 (256)
T cd05114          76 IVTEFMENGCLLNYLRQR--QGKLSKDMLLSMCQDVCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTRYV  150 (256)
T ss_pred             EEEEcCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcceEEEcCCCeEEECCCCCcccc
Confidence            999999999999998643  235899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ......   ...++..|+|||.+.+..++.++||||||+++|||++ |+.||......+....+...       ..   .
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~-------~~---~  220 (256)
T cd05114         151 LDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRG-------FR---L  220 (256)
T ss_pred             CCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCC-------CC---C
Confidence            433222   1233467999999988889999999999999999999 99999876544332222110       00   0


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                             ..+...+..+.+++.+||+.||.+||++.++++.|.
T Consensus       221 -------~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         221 -------YRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             -------CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                   012223467899999999999999999999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.4e-40  Score=316.80  Aligned_cols=253  Identities=21%  Similarity=0.359  Sum_probs=202.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|.+.++    +.++++.  ........+++.+|+.++++++|+||+++++++...  +..
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~----~~v~iK~--~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   76 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNT----TPVAVKT--LKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLE--EPI   76 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCC----eEEEEEe--eCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecC--CCe
Confidence            35688889999999999999986543    2333433  333334457799999999999999999999988765  788


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++.... +..+++..+..++.|++.||.|||+.+   |+|+||||+||+++.++.+||+|||++..
T Consensus        77 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~  152 (261)
T cd05068          77 YIVTELMKYGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLEAQN---YIHRDLAARNVLVGENNICKVADFGLARV  152 (261)
T ss_pred             eeeeecccCCcHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCcceEEEcCCCCEEECCcceEEE
Confidence            99999999999999996542 456899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCccCcc---cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDISNSS---VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~~~~~---~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ..........   .+..|+|||++.+..++.++||||||+++|||++ |+.||.+.........+...            
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~------------  220 (261)
T cd05068         153 IKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQG------------  220 (261)
T ss_pred             ccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC------------
Confidence            6533222222   2357999999988889999999999999999999 99999876544332222100            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                           .....+...+..+.+++.+||+.+|.+||++.+|++.|+.+
T Consensus       221 -----~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         221 -----YRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             -----CCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence                 00011334567899999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.2e-40  Score=330.43  Aligned_cols=245  Identities=18%  Similarity=0.232  Sum_probs=197.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC---CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||++....+....+.+++|+....   ........+.+|+.+|+.++||||+++++++..+  +..|+||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~--~~~~lv~   79 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTG--GKLYLIL   79 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecC--CeEEEEE
Confidence            6799999999999987554455666777765532   1223345678899999999999999999998776  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      ||+++|+|.+++..   ...+.+..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++......
T Consensus        80 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (323)
T cd05584          80 EYLSGGELFMHLER---EGIFMEDTACFYLSEISLALEHLHQQG---IIYRDLKPENILLDAQGHVKLTDFGLCKESIHE  153 (323)
T ss_pred             eCCCCchHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEeeCcCCeecccC
Confidence            99999999999853   345788999999999999999999999   999999999999999999999999998754222


Q ss_pred             --CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          338 --DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       338 --~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                        ......+++.|+|||++.+..++.++|||||||++|||++|..||...........+...                . 
T Consensus       154 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~----------------~-  216 (323)
T cd05584         154 GTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKG----------------K-  216 (323)
T ss_pred             CCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcC----------------C-
Confidence              223346889999999999888999999999999999999999999876544322222110                0 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                       ..++...+..+.+|+.+||+.||++||     ++.++++.
T Consensus       217 -~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         217 -LNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             -CCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence             012334567889999999999999999     78888763

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=6.7e-41  Score=332.36  Aligned_cols=242  Identities=17%  Similarity=0.250  Sum_probs=194.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      +.||+|+||.||++....   .++.+++|+....  ........+.+|+.++..++||||+++++++...  +..|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~--~~~~lv~E   75 (323)
T cd05595           1 KLLGKGTFGKVILVREKA---TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH--DRLCFVME   75 (323)
T ss_pred             CeeeeCCCEEEEEEEECC---CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecC--CEEEEEEe
Confidence            469999999999998543   3345556655432  1233456678899999999999999999988766  78999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-  337 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-  337 (473)
                      |+++|+|..++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++...... 
T Consensus        76 ~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~  149 (323)
T cd05595          76 YANGGELFFHLSR---ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG  149 (323)
T ss_pred             CCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEEcCCCCEEecccHHhccccCCC
Confidence            9999999988843   346899999999999999999999999   999999999999999999999999998754222 


Q ss_pred             -CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccC
Q 011995          338 -DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK  416 (473)
Q Consensus       338 -~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  416 (473)
                       ......+++.|+|||++.+..++.++|||||||++|||++|..||...........+...              +    
T Consensus       150 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~--------------~----  211 (323)
T cd05595         150 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILME--------------E----  211 (323)
T ss_pred             CccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcC--------------C----
Confidence             223456889999999999889999999999999999999999999766544332222110              0    


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          417 GRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       417 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                      ..++...+.++.+++.+||+.||.+|+     ++.++++.
T Consensus       212 ~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         212 IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             CCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            012445568899999999999999998     88888763

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=3.6e-40  Score=320.59  Aligned_cols=258  Identities=21%  Similarity=0.331  Sum_probs=202.1

Q ss_pred             cccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|.+.. +....+.++++.............+.+|+++++.++|+||+++++++...  +..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~   82 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQE--QPV   82 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecC--Cce
Confidence            467778999999999999998532 22233444454444333344456789999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCC--------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSD--------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~--------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      |+||||+++++|.+++.....              ...+++..+..++.|++.||.|||+++   |+|+||||+|||++.
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~nili~~  159 (283)
T cd05090          83 CMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGE  159 (283)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC---eehhccccceEEEcC
Confidence            999999999999999853211              235789999999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHh
Q 011995          320 DFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLV  394 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~  394 (473)
                      ++.+||+|||++.......    .....++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+
T Consensus       160 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~  239 (283)
T cd05090         160 QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMV  239 (283)
T ss_pred             CCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence            9999999999997653322    122334567999999988889999999999999999998 99999765543322222


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      ....                 ....+..++..+.+++.+||+.||++||++.+|++.|..
T Consensus       240 ~~~~-----------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         240 RKRQ-----------------LLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HcCC-----------------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            1100                 001133455789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-41  Score=308.94  Aligned_cols=257  Identities=18%  Similarity=0.290  Sum_probs=209.4

Q ss_pred             HHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC----Ch---hhHhHHHHHHHHHhC-CCCCcccc
Q 011995          170 VAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQ---GVKEFINDVNTLASL-QHPNLCKL  241 (473)
Q Consensus       170 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~Ei~~l~~l-~HpnIv~l  241 (473)
                      -....++|...+.||+|..++|-++.   ...+++.++++++.....    +.   ..+.-++|+.||+++ .||+|+++
T Consensus        12 a~~fy~~y~pkeilgrgvss~vrRci---~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l   88 (411)
T KOG0599|consen   12 AKGFYAKYEPKEILGRGVSSVVRRCI---HKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDL   88 (411)
T ss_pred             HhhHHhhcChHHHhcccchhhhhhhh---hcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEe
Confidence            34456788899999999999999998   445667777777665432    11   124456799999998 79999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                      .+++..+  ..+++|+|.|+.|.|+|+|.   ...++++....+|+.|+..|++|||.++   ||||||||+|||++++.
T Consensus        89 ~D~yes~--sF~FlVFdl~prGELFDyLt---s~VtlSEK~tR~iMrqlfegVeylHa~~---IVHRDLKpENILlddn~  160 (411)
T KOG0599|consen   89 QDVYESD--AFVFLVFDLMPRGELFDYLT---SKVTLSEKETRRIMRQLFEGVEYLHARN---IVHRDLKPENILLDDNM  160 (411)
T ss_pred             eeeccCc--chhhhhhhhcccchHHHHhh---hheeecHHHHHHHHHHHHHHHHHHHHhh---hhhcccChhheeecccc
Confidence            9999876  88999999999999999994   3457999999999999999999999999   99999999999999999


Q ss_pred             cEEEeccCCCcccCCC-CccCcccccccCChhhhhcC------CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh
Q 011995          322 SAKLSGYGCAGHIPET-DISNSSVAAANLSVETLERG------LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV  394 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~------~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~  394 (473)
                      ++||+|||+++.+..+ .....+||++|+|||.+...      .|+..+|+|++|||+|-|+.|.+||.-.....+...+
T Consensus       161 ~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~I  240 (411)
T KOG0599|consen  161 NIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMI  240 (411)
T ss_pred             ceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            9999999999988655 45677999999999998543      4788999999999999999999999754433333333


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ....-              .+...-..+.+.+..+||.+||+.||.+|.|++|+|..
T Consensus       241 meGky--------------qF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  241 MEGKY--------------QFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             Hhccc--------------ccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            21110              01111245778899999999999999999999999864

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=4.8e-40  Score=320.70  Aligned_cols=263  Identities=22%  Similarity=0.381  Sum_probs=205.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|.+.+.||+|+||.||++...+.........++++.+.. .......+.+|++++.+++|+||+++++++...  +.
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   81 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG--DP   81 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC--Cc
Confidence            357888899999999999999753321111122233344332 334456799999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCC----------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRS----------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS  322 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~  322 (473)
                      .++||||+++++|.+++....          ....+++..+..++.|++.||+|||+++   ++||||||+|||++.++.
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~---i~H~dlkp~Nili~~~~~  158 (288)
T cd05093          82 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLL  158 (288)
T ss_pred             cEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCc
Confidence            999999999999999986432          1235899999999999999999999999   999999999999999999


Q ss_pred             EEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhc
Q 011995          323 AKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~  397 (473)
                      +||+|||++........    ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+...
T Consensus       159 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~  238 (288)
T cd05093         159 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG  238 (288)
T ss_pred             EEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            99999999876543321    22234678999999998889999999999999999998 99999776543322222110


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ..             .    ..+...+.++.+|+.+||+.||.+|||+.++++.|+++...
T Consensus       239 ~~-------------~----~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         239 RV-------------L----QRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             Cc-------------C----CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence            00             0    01223456799999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=6.1e-40  Score=320.20  Aligned_cols=261  Identities=23%  Similarity=0.397  Sum_probs=204.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +|+..+.||+|+||.||+|......  .....+++++............+.+|+.+++.++||||+++++++...  +..
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   78 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQD--GPL   78 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecC--CCc
Confidence            4777899999999999999864321  122334444433333334456789999999999999999999998765  778


Q ss_pred             EEEEEeccCCChhhhhhcCC---------------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS---------------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST  312 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp  312 (473)
                      ++|+||+.+|+|.+++....                     ....+++..+..++.|++.||.|||+.+   |+||||||
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---ivH~dikp  155 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK---LVHRDLAA  155 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC---eehhhhhh
Confidence            99999999999999885421                     1235889999999999999999999998   99999999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCCh
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHP  387 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~  387 (473)
                      +|||++.++.+||+|||+++......    .....++..|+|||.+.+..++.++||||||+++|||++ |..||.+...
T Consensus       156 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  235 (290)
T cd05045         156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP  235 (290)
T ss_pred             heEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            99999999999999999987653221    122244578999999988889999999999999999998 9999977654


Q ss_pred             HHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ......+..       .          .....+...+.++.+|+.+||+.||.+||++.++++.|+++..+
T Consensus       236 ~~~~~~~~~-------~----------~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~~  289 (290)
T cd05045         236 ERLFNLLKT-------G----------YRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMVK  289 (290)
T ss_pred             HHHHHHHhC-------C----------CCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHhc
Confidence            432222110       0          00111334557899999999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.4e-40  Score=325.25  Aligned_cols=266  Identities=17%  Similarity=0.219  Sum_probs=196.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|....   ..+.+++|+............+.+|+.+++.++||||+++++++.+.  +..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~   78 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKV---NGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTK--ETL   78 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECC---CCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecC--CeE
Confidence            4689999999999999999998543   34555666655443333445678999999999999999999998766  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+. ++|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        79 ~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  152 (303)
T cd07869          79 TLVFEYVH-TDLCQYMDKH--PGGLHPENVKLFLFQLLRGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARA  152 (303)
T ss_pred             EEEEECCC-cCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECCCCccee
Confidence            99999995 6888877542  345889999999999999999999999   99999999999999999999999999875


Q ss_pred             cCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH-HHhHhhhccccccccc----
Q 011995          334 IPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-ERNLVKWSRPFLADDC----  405 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~----  405 (473)
                      ....  ......+++.|+|||++.+ ..++.++|||||||++|||++|..||.+..... ....+.+.........    
T Consensus       153 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (303)
T cd07869         153 KSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGV  232 (303)
T ss_pred             ccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccch
Confidence            4322  2234567899999999865 457899999999999999999999998754322 1111111000000000    


Q ss_pred             ---------ccccccccccCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 ---------RLSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ---------~~~~~~~~~l~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                               .........+...+ ....+..+.+|+.+||+.||.+|||+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         233 HSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             hhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence                     00000000000000 0012357889999999999999999999986

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=3.2e-40  Score=322.42  Aligned_cols=261  Identities=21%  Similarity=0.377  Sum_probs=207.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||++...+..  .....++++.............+.+|++++.++ +|+||+++++++..+  
T Consensus        11 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~--   88 (293)
T cd05053          11 RDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE--   88 (293)
T ss_pred             HhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC--
Confidence            456888899999999999999875432  233445555544433444556789999999999 899999999998765  


Q ss_pred             CceEEEEEeccCCChhhhhhcC-------------CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee
Q 011995          251 DQRMLIYERLFHGSLDRLIYGR-------------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI  317 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~-------------~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl  317 (473)
                      +..++||||+++|+|.+++...             .....+++..++.++.|++.||.|||+.+   |+||||||+|||+
T Consensus        89 ~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~Nil~  165 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK---CIHRDLAARNVLV  165 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC---ccccccceeeEEE
Confidence            6899999999999999998642             22456899999999999999999999998   9999999999999


Q ss_pred             CCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHh
Q 011995          318 DKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERN  392 (473)
Q Consensus       318 ~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~  392 (473)
                      +.++.+||+|||++........    ....++..|+|||++.+..++.++|||||||++|||++ |..||......+...
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~  245 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFK  245 (293)
T ss_pred             cCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHH
Confidence            9999999999999987644322    11233467999999988889999999999999999997 999998765444332


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .+...                 .....+..++..+.+|+.+||..||++|||+.++++.|+.+-
T Consensus       246 ~~~~~-----------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         246 LLKEG-----------------YRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             HHHcC-----------------CcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            22100                 001123345678999999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=9.3e-41  Score=331.60  Aligned_cols=242  Identities=17%  Similarity=0.247  Sum_probs=194.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      +.||+|+||.||++....   .++.+++|+....  ........+.+|++++..++||||+++++++...  +..|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~---~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~--~~~~lv~E   75 (325)
T cd05594           1 KLLGKGTFGKVILVKEKA---TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH--DRLCFVME   75 (325)
T ss_pred             CeeeeCCCEEEEEEEECC---CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcC--CEEEEEEe
Confidence            469999999999998543   3455566655432  1233456778899999999999999999988766  78999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      |+++|+|.+++..   ...+++..+..++.||+.||.|||+ .+   |+||||||+|||++.++.+||+|||++......
T Consensus        76 ~~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~lH~~~~---ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~  149 (325)
T cd05594          76 YANGGELFFHLSR---ERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD  149 (325)
T ss_pred             CCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCCCCeEEECCCCCEEEecCCCCeecCCC
Confidence            9999999988843   3468999999999999999999997 67   999999999999999999999999998754322


Q ss_pred             --CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          338 --DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       338 --~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                        ......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+....                 
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~-----------------  212 (325)
T cd05594         150 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE-----------------  212 (325)
T ss_pred             CcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCC-----------------
Confidence              2234568999999999999899999999999999999999999998765443332221110                 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                       ..++...+.++.+|+.+||+.||.+|+     ++.++++.
T Consensus       213 -~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         213 -IRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             -CCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence             012334567899999999999999997     89999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.4e-40  Score=320.94  Aligned_cols=269  Identities=17%  Similarity=0.226  Sum_probs=197.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhC---CCCCcccceeeeecC--
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASL---QHPNLCKLLGFHARD--  248 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l---~HpnIv~l~g~~~~~--  248 (473)
                      ++|+..+.||+|+||.||+|.....  .+..+++|+.+.... ......+.+|+.+++.+   +||||+++++++...  
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~   78 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKN--GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   78 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCC--CCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccC
Confidence            3688889999999999999985322  223445555544322 22334567788777766   699999999988532  


Q ss_pred             -CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          249 -GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       249 -~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                       ....+++||||+. ++|.+++... ....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|
T Consensus        79 ~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~---iiH~dlkp~Nil~~~~~~~kl~D  153 (290)
T cd07862          79 DRETKLTLVFEHVD-QDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLAD  153 (290)
T ss_pred             CCCCcEEEEEccCC-CCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEcCCCCEEEcc
Confidence             2356899999996 6899988653 2345899999999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hhccccccccc
Q 011995          328 YGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLADDC  405 (473)
Q Consensus       328 FGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~~~~~~~  405 (473)
                      ||++....... .....+++.|+|||.+.+..++.++|||||||++|||++|.+||.+....+....+ ...........
T Consensus       154 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~  233 (290)
T cd07862         154 FGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDW  233 (290)
T ss_pred             ccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhc
Confidence            99997664332 23456789999999998888999999999999999999999999876654433222 11110000000


Q ss_pred             cc-----ccccccccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RL-----SLIMDPQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~-----~~~~~~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..     .........   ..+....+..+.+++.+||+.||++|||+.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         234 PRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            00     000000000   0011235677889999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.3e-40  Score=315.60  Aligned_cols=259  Identities=20%  Similarity=0.380  Sum_probs=204.4

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC----C
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS----D  251 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~----~  251 (473)
                      |.+.+.||+|+||.||+|.+..+....+.++++...... .......+.+|+++++.++|+||+++++++.....    .
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            456789999999999999976655445566666655432 23445688999999999999999999998865421    2


Q ss_pred             ceEEEEEeccCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS---DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ..++||||+++|+|..++....   ....+++..+..++.|++.||.|||+.+   ++||||||+||++++++.+||+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN---FIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchheEEECCCCeEEECCc
Confidence            4799999999999998885432   2246899999999999999999999998   999999999999999999999999


Q ss_pred             CCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccc
Q 011995          329 GCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       329 Gla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+++.......    .....+..|++||.+.+..++.++|||||||++|||++ |..||...........+.       .
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~-------~  230 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLR-------H  230 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-------c
Confidence            99986643321    11234568999999988889999999999999999999 999997655433222111       0


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      +.          ....+..++..+.+++.+||+.||.+||++.+|++.|+++
T Consensus       231 ~~----------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         231 GN----------RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             CC----------CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            00          0112344567899999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-40  Score=326.72  Aligned_cols=260  Identities=21%  Similarity=0.387  Sum_probs=210.7

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ..+.++||+|-||.|..+....    ..++|+|..+-........+|.+|+++|.+++|||||.|+|+|..+  +.+++|
T Consensus       540 L~~~ekiGeGqFGEVhLCeveg----~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~D--ePicmI  613 (807)
T KOG1094|consen  540 LRFKEKIGEGQFGEVHLCEVEG----PLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQD--DPLCMI  613 (807)
T ss_pred             eehhhhhcCcccceeEEEEecC----ceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecC--CchHHH
Confidence            3445999999999999997654    3455555555555666778999999999999999999999999988  889999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      +|||++|+|.+++..... +.+.-....+|+.||+.||+||.+-+   +|||||.+.|+|+|.++++||+|||+++.+..
T Consensus       614 ~EYmEnGDLnqFl~ahea-pt~~t~~~vsi~tqiasgmaYLes~n---fVHrd~a~rNcLv~~e~~iKiadfgmsR~lys  689 (807)
T KOG1094|consen  614 TEYMENGDLNQFLSAHEL-PTAETAPGVSICTQIASGMAYLESLN---FVHRDLATRNCLVDGEFTIKIADFGMSRNLYS  689 (807)
T ss_pred             HHHHhcCcHHHHHHhccC-cccccchhHHHHHHHHHHHHHHHhhc---hhhccccccceeecCcccEEecCccccccccc
Confidence            999999999999976432 23455667789999999999999999   99999999999999999999999999998877


Q ss_pred             CCccCcc----cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc--CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          337 TDISNSS----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT--GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       337 ~~~~~~~----~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt--G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .++....    ..+.|||+|.+.-++++.++|||+||+++||+++  .+.||......+.   ++-...+..+...... 
T Consensus       690 g~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~v---ven~~~~~~~~~~~~~-  765 (807)
T KOG1094|consen  690 GDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQV---VENAGEFFRDQGRQVV-  765 (807)
T ss_pred             CCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHH---HHhhhhhcCCCCccee-
Confidence            7665443    4589999999999999999999999999999864  7889976654432   2222223332222111 


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                            ...|.-++..+.+++.+||..|-++||+++++...|++..
T Consensus       766 ------l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~~  805 (807)
T KOG1094|consen  766 ------LSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQEDA  805 (807)
T ss_pred             ------ccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHhc
Confidence                  1225567788999999999999999999999999998653

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.8e-40  Score=330.53  Aligned_cols=254  Identities=20%  Similarity=0.249  Sum_probs=198.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC---CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      +|++.+.||+|+||.||++....+....+.+++|+....   ......+.+..|+.++..+ +|+||+++++++..+  +
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~--~   78 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTE--A   78 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecC--C
Confidence            578889999999999999986555555666777766432   1233446688999999999 599999999888765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        79 ~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nili~~~~~~kl~DfG~~  152 (332)
T cd05614          79 KLHLILDYVSGGEMFTHLYQ---RDNFSEDEVRFYSGEIILALEHLHKLG---IVYRDIKLENILLDSEGHVVLTDFGLS  152 (332)
T ss_pred             EEEEEEeCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHeEECCCCCEEEeeCcCC
Confidence            89999999999999999854   345899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC---ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          332 GHIPETD---ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       332 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      +......   .....+|+.|+|||++.+.. ++.++|||||||++|||++|..||...........+..  ...      
T Consensus       153 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~--~~~------  224 (332)
T cd05614         153 KEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSR--RIL------  224 (332)
T ss_pred             ccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHH--HHh------
Confidence            7653321   22446899999999997654 78999999999999999999999965332111110100  000      


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                        ..++    .++...+..+.+++.+||+.||++||     +++++++.
T Consensus       225 --~~~~----~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  267 (332)
T cd05614         225 --KCDP----PFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEH  267 (332)
T ss_pred             --cCCC----CCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcC
Confidence              0111    22344567889999999999999999     77788754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-40  Score=346.15  Aligned_cols=262  Identities=17%  Similarity=0.232  Sum_probs=210.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceee-eec---
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGF-HAR---  247 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~-~~~---  247 (473)
                      ...++++.+.|.+|||+.||.|......   +.+++|..... .+...+.+++||++|+.|. |+|||.+++. ...   
T Consensus        35 g~~~v~V~~vLAEGGFa~VYla~~~~~~---~~~AlKrm~~~-de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~  110 (738)
T KOG1989|consen   35 GSHRVTVEKVLAEGGFAQVYLAQDVKGG---KKYALKRMYVN-DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSS  110 (738)
T ss_pred             CCEEEEEEEEEccCCcEEEEEEEecCCC---ceeeeeeeecC-CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccC
Confidence            3467788899999999999999865443   56666665555 6778889999999999995 9999999993 222   


Q ss_pred             CC-CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          248 DG-SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       248 ~~-~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                      .+ .-+++|+||||.+|+|-|++..+.. ..|++.++++|+.++++|+++||...+ +|||||||-+||||+.++..|||
T Consensus       111 ~~~~~EvllLmEyC~gg~Lvd~mn~Rlq-~~lte~eVLkIf~dv~~AVa~mH~~~p-PiIHRDLKiENvLls~~g~~KLC  188 (738)
T KOG1989|consen  111 NNGVWEVLLLMEYCKGGSLVDFMNTRLQ-TRLTEDEVLKIFYDVCEAVAAMHYLKP-PIIHRDLKIENVLLSADGNYKLC  188 (738)
T ss_pred             CCceeEEEeehhhccCCcHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHhcCCC-ccchhhhhhhheEEcCCCCEEeC
Confidence            11 2468899999999999999976543 349999999999999999999999975 59999999999999999999999


Q ss_pred             ccCCCcccCCCCc-----------cCcccccccCChhhh---hcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          327 GYGCAGHIPETDI-----------SNSSVAAANLSVETL---ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       327 DFGla~~~~~~~~-----------~~~~~t~~y~aPE~~---~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      |||.++.......           -....|+.|++||++   .+...++|+|||+|||+||-|+....||+......   
T Consensus       189 DFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~la---  265 (738)
T KOG1989|consen  189 DFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLA---  265 (738)
T ss_pred             cccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCccee---
Confidence            9999865422110           122458999999987   45678999999999999999999999998643211   


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                                       |++....-.-....+..+.+||..||+.||.+||++-+++..+-+|.....
T Consensus       266 -----------------Ilng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~  316 (738)
T KOG1989|consen  266 -----------------ILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPC  316 (738)
T ss_pred             -----------------EEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCC
Confidence                             122222111124788999999999999999999999999999998876543

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-42  Score=308.81  Aligned_cols=253  Identities=17%  Similarity=0.241  Sum_probs=207.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|++...||+|.|+.||++.   +..++..++++++..+. ...+.+.+.+|+.|-+.++|||||+|++-+..+  ..
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~---~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~--~~   84 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCV---HKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE--SF   84 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHH---hccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhccc--ce
Confidence            4567777899999999999998   45566666666665542 455788999999999999999999999987665  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---CcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---FSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~~vkl~DFG  329 (473)
                      .|||+|+|.|++|..-|-.+   .-+++..+-..+.||+.+|.|+|.++   |||||+||+|+|+...   .-+||+|||
T Consensus        85 ~ylvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~n~---IvHRDvkP~nllLASK~~~A~vKL~~FG  158 (355)
T KOG0033|consen   85 HYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHSNG---IVHRDLKPENLLLASKAKGAAVKLADFG  158 (355)
T ss_pred             eEEEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeeeeccCCCceeecccc
Confidence            99999999999997666433   34688888999999999999999999   9999999999999533   459999999


Q ss_pred             CCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          330 CAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       330 la~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +|..+... ......||++|||||++....|+..+|||+.|||||-|+.|.+||.+.......+.+....          
T Consensus       159 vAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~----------  228 (355)
T KOG0033|consen  159 LAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGA----------  228 (355)
T ss_pred             eEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccc----------
Confidence            99887643 3456789999999999999999999999999999999999999999866555444332111          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          -...+....++++++++|+.+||..||.+|.|+.|.|+.
T Consensus       229 ----yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  229 ----YDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             ----cCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCC
Confidence                011222345788999999999999999999999998754

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=6.9e-40  Score=341.12  Aligned_cols=270  Identities=14%  Similarity=0.176  Sum_probs=196.0

Q ss_pred             HHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC------CCccc
Q 011995          167 LDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH------PNLCK  240 (473)
Q Consensus       167 ~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H------pnIv~  240 (473)
                      .+++...+++|.+.+.||+|+||+||+|....   ..+.+++|+.+..  ......+..|++++..++|      .+++.
T Consensus       121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~---~~~~vAvK~i~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~  195 (467)
T PTZ00284        121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWDRK---RKEYCAVKIVRNV--PKYTRDAKIEIQFMEKVRQADPADRFPLMK  195 (467)
T ss_pred             CCccccCCCcEEEEEEEEeccCEEEEEEEEcC---CCeEEEEEEEecc--hhhHHHHHHHHHHHHHHhhcCcccCcceee
Confidence            34555567899999999999999999998543   3345556655422  2233456677777777754      45888


Q ss_pred             ceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCC
Q 011995          241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       241 l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~  319 (473)
                      +++++..+ ...+|+|||++ +++|.+++..   ...+++..+..|+.||+.||.|||++ +   ||||||||+|||++.
T Consensus       196 i~~~~~~~-~~~~~iv~~~~-g~~l~~~l~~---~~~l~~~~~~~i~~qi~~aL~yLH~~~g---IiHrDlKP~NILl~~  267 (467)
T PTZ00284        196 IQRYFQNE-TGHMCIVMPKY-GPCLLDWIMK---HGPFSHRHLAQIIFQTGVALDYFHTELH---LMHTDLKPENILMET  267 (467)
T ss_pred             eEEEEEcC-CceEEEEEecc-CCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEec
Confidence            88888754 36789999988 7789888854   34699999999999999999999984 7   999999999999987


Q ss_pred             CC----------------cEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          320 DF----------------SAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       320 ~~----------------~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      ++                .+||+|||++.... .......+|+.|+|||++.+..++.++|||||||++|||++|++||.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~-~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~  346 (467)
T PTZ00284        268 SDTVVDPVTNRALPPDPCRVRICDLGGCCDER-HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD  346 (467)
T ss_pred             CCcccccccccccCCCCceEEECCCCccccCc-cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            65                49999999876432 22345678999999999999999999999999999999999999998


Q ss_pred             CCChHHHHhHhhhccccccccc-------cccccc------ccccCC----------CC-CHHHHHHHHHHHHHhcccCC
Q 011995          384 SRHPKEERNLVKWSRPFLADDC-------RLSLIM------DPQLKG----------RF-PLKAARTVADIALRCLQKEP  439 (473)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~------~~~l~~----------~~-~~~~~~~l~~li~~cl~~dP  439 (473)
                      +....+....+......+....       ....+.      .+....          .. .......+.+||.+||++||
T Consensus       347 ~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP  426 (467)
T PTZ00284        347 THDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDR  426 (467)
T ss_pred             CCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcCh
Confidence            7765544433321110000000       000000      000000          00 01124567899999999999


Q ss_pred             CCCCCHHHHHH
Q 011995          440 SERPTMRSIFE  450 (473)
Q Consensus       440 ~~RPt~~eil~  450 (473)
                      .+|||++|+|+
T Consensus       427 ~~R~ta~e~L~  437 (467)
T PTZ00284        427 QKRLNARQMTT  437 (467)
T ss_pred             hhCCCHHHHhc
Confidence            99999999997

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.2e-39  Score=316.29  Aligned_cols=259  Identities=20%  Similarity=0.345  Sum_probs=205.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||+||+|.+..+.. ....+++|+............+.+|+.++..++|+||+++++++..   ...
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~---~~~   83 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT---STV   83 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC---CCc
Confidence            567888999999999999998644332 2334566665544455556788999999999999999999999864   457


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++++||+++|+|.+++...  ...+++..++.++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+++.
T Consensus        84 ~l~~~~~~~g~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~---iiH~dlkp~Nil~~~~~~~kL~dfG~~~~  158 (279)
T cd05109          84 QLVTQLMPYGCLLDYVREN--KDRIGSQDLLNWCVQIAKGMSYLEEVR---LVHRDLAARNVLVKSPNHVKITDFGLARL  158 (279)
T ss_pred             EEEEEcCCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCCCceee
Confidence            8999999999999998542  346899999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ......    ....++..|++||.+.+..++.++|||||||++|||++ |..||...........+..       ...  
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~-------~~~--  229 (279)
T cd05109         159 LDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEK-------GER--  229 (279)
T ss_pred             cccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHC-------CCc--
Confidence            643221    12234568999999988889999999999999999998 9999976544332222210       000  


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                              ...+...+.++.+++.+||..||++||++.++++.|+++...
T Consensus       230 --------~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         230 --------LPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             --------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence                    011234557889999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=3.3e-40  Score=344.02  Aligned_cols=250  Identities=22%  Similarity=0.285  Sum_probs=199.5

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      .|...+.||+|+||.||+|....+.  ...+++|+.... .......+.+|+.+|..++|||||++++++...  +.+||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~--~~~vv~K~~~~~-~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~--~~~~l  142 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDP--KEKVVAKFVMLN-DERQAAYARSELHCLAACDHFGIVKHFDDFKSD--DKLLL  142 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCC--CeEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEEC--CEEEE
Confidence            3888899999999999999854331  233334333222 333445678899999999999999999999876  78999


Q ss_pred             EEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          256 IYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||||+++|+|.+++... .....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++..+
T Consensus       143 v~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~~~~~~kL~DFgla~~~  219 (478)
T PTZ00267        143 IMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQY  219 (478)
T ss_pred             EEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCcCHHhEEECCCCcEEEEeCcCceec
Confidence            99999999999988542 22456899999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....    .....+|+.|+|||++.+..++.++|||||||++|||++|+.||......+....+....            
T Consensus       220 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~------------  287 (478)
T PTZ00267        220 SDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGK------------  287 (478)
T ss_pred             CCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC------------
Confidence            4322    234468999999999998889999999999999999999999998765443322221110            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                           ...++..++.++.+||.+||..||++||++.+++.
T Consensus       288 -----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        288 -----YDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             -----CCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence                 00123345678999999999999999999999875

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=8.1e-40  Score=315.26  Aligned_cols=258  Identities=18%  Similarity=0.327  Sum_probs=203.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|....+......++++.............+..|++++..++|+||+++++++...  +..
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   81 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKF--KPA   81 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccC--CCc
Confidence            457888899999999999999976443333344455444333344567789999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++...  ...+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.+||+|||++..
T Consensus        82 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~  156 (268)
T cd05063          82 MIITEYMENGALDKYLRDH--DGEFSSYQLVGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRV  156 (268)
T ss_pred             EEEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEEcCCCcEEECCCcccee
Confidence            9999999999999998542  356899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCCccC-----cccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETDISN-----SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~~~~-----~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ........     ...+..|++||++.+..++.++|||||||++|||++ |..||...........+..       .   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~-------~---  226 (268)
T cd05063         157 LEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAIND-------G---  226 (268)
T ss_pred             cccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhc-------C---
Confidence            54322111     122357999999988889999999999999999997 9999976544332221110       0   


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                             .....+..++..+.+++.+||+.+|++||++.+|++.|+++
T Consensus       227 -------~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         227 -------FRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             -------CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                   00011223457889999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=3.8e-40  Score=335.21  Aligned_cols=261  Identities=19%  Similarity=0.290  Sum_probs=203.9

Q ss_pred             cccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~  251 (473)
                      ++|...+.||+|+||.||+|++.+.  ....+.+++|+............+.+|+.+|.++. |||||++++++...  .
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~--~  114 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKG--G  114 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC--C
Confidence            3566669999999999999997642  22344556665554333444567899999999997 99999999999776  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC---------------------------------------------------------
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD---------------------------------------------------------  274 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~---------------------------------------------------------  274 (473)
                      ..++||||+.+|+|.++++....                                                         
T Consensus       115 ~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (401)
T cd05107         115 PIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQD  194 (401)
T ss_pred             CcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhc
Confidence            89999999999999999965321                                                         


Q ss_pred             --------------------------------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          275 --------------------------------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       275 --------------------------------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                                                            ...+++..+..++.|++.||+|||+.+   |+||||||+|||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrdlkp~NiL  271 (401)
T cd05107         195 MKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN---CVHRDLAARNVL  271 (401)
T ss_pred             chhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC---cCcccCCcceEE
Confidence                                                  124678889999999999999999998   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ++.++.+||+|||+++......    .....++..|+|||.+.+..++.++|||||||++|||++ |..||......+..
T Consensus       272 l~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~  351 (401)
T cd05107         272 ICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQF  351 (401)
T ss_pred             EeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHH
Confidence            9999999999999997653221    122345678999999988889999999999999999998 89999765433321


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      ....      ..+          .....+..++.++.+|+.+||..+|.+||++.+|++.|+++.
T Consensus       352 ~~~~------~~~----------~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         352 YNAI------KRG----------YRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             HHHH------HcC----------CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            1110      000          011123345688999999999999999999999999999763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=8.4e-40  Score=317.07  Aligned_cols=259  Identities=19%  Similarity=0.315  Sum_probs=201.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      +++|.+.+.||+|+||.||+|.+.+..  .....++++.............|.+|+.+++.++|+||+++++++.+.  +
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~   82 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER--L   82 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC--C
Confidence            467888899999999999999875421  123333344333333344456789999999999999999999988765  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC---cEE
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD----GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF---SAK  324 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~---~vk  324 (473)
                      ..++||||+++++|.+++.....    ...+++..+..++.||+.||+|||+.+   ++|+||||+|||++.++   .+|
T Consensus        83 ~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~nil~~~~~~~~~~k  159 (277)
T cd05036          83 PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCKGPGRVAK  159 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchheEEEeccCCCcceE
Confidence            78999999999999999865421    235899999999999999999999999   99999999999998654   599


Q ss_pred             EeccCCCcccCCCCcc----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETDIS----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~~~----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||+++........    ....+..|+|||++.+..++.++|||||||++|||++ |..||...........+...  
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~--  237 (277)
T cd05036         160 IADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGG--  237 (277)
T ss_pred             eccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC--
Confidence            9999999876432221    1223467999999998899999999999999999997 99999876544332222100  


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                                     ....++..++..+.+++.+||+.+|++||++.+|++.|+.
T Consensus       238 ---------------~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         238 ---------------GRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             ---------------CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence                           0111233456789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=5.1e-40  Score=328.77  Aligned_cols=263  Identities=20%  Similarity=0.325  Sum_probs=204.1

Q ss_pred             cccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|++.+.||+|+||.||+|...+  .....+.+++|+.+..........+.+|+.++.++ +|+||+++++++...+ .
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~-~   85 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG-G   85 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC-C
Confidence            478888999999999999998532  23345666676665443444556788999999999 7899999999886553 5


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC---------------------------------------------------------
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD---------------------------------------------------------  274 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~---------------------------------------------------------  274 (473)
                      ..++||||+++|+|.+++.....                                                         
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  165 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhh
Confidence            78999999999999999864210                                                         


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc----cCcc
Q 011995          275 -------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI----SNSS  343 (473)
Q Consensus       275 -------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~  343 (473)
                             ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++........    ....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  242 (343)
T cd05103         166 AEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDAR  242 (343)
T ss_pred             hhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCC
Confidence                   124788899999999999999999999   99999999999999999999999999876532211    1223


Q ss_pred             cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHH
Q 011995          344 VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLK  422 (473)
Q Consensus       344 ~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (473)
                      ++..|+|||.+.+..++.++|||||||++|||++ |..||............      +..+..          ...+..
T Consensus       243 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~------~~~~~~----------~~~~~~  306 (343)
T cd05103         243 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR------LKEGTR----------MRAPDY  306 (343)
T ss_pred             CCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHH------HhccCC----------CCCCCC
Confidence            4567999999988889999999999999999996 99999764332211110      000000          011222


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          423 AARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       423 ~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      .+.++.+++..||+.||.+|||+.+|++.|+.+.+
T Consensus       307 ~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         307 TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            44678999999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-40  Score=317.65  Aligned_cols=259  Identities=21%  Similarity=0.349  Sum_probs=205.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|...+..  ...+.++++.............+.+|+.++..++|+||+++++++...  .
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~   82 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG--Q   82 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC--C
Confidence            357888899999999999999875433  233455555543333334456788999999999999999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC-------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD-------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      ..++||||+++|+|.+++.....       ...+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+|
T Consensus        83 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~di~p~nill~~~~~~k  159 (277)
T cd05032          83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK---FVHRDLAARNCMVAEDLTVK  159 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccChheEEEcCCCCEE
Confidence            89999999999999999865321       234789999999999999999999998   99999999999999999999


Q ss_pred             EeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||+++.......    ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+.... 
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~-  238 (277)
T cd05032         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGG-  238 (277)
T ss_pred             ECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCC-
Confidence            999999876543321    22345678999999988889999999999999999998 999997655444332221000 


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                                      ....+..++..+.+++.+||+.+|++|||+.++++.|++
T Consensus       239 ----------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         239 ----------------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             ----------------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence                            001233346789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-40  Score=335.15  Aligned_cols=250  Identities=18%  Similarity=0.230  Sum_probs=198.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||+||+|....   .++.+++|+.....  .......+.+|+++|..++|+||+++++++.+.  +.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~--~~   75 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKD---TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDE--NY   75 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECC---CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcC--Ce
Confidence            478889999999999999998544   34455666655321  223446678999999999999999999998876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||+.+|+|.+++..   ...+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~E~~~~g~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  149 (364)
T cd05599          76 LYLIMEYLPGGDMMTLLMK---KDTFTEEETRFYIAETILAIDSIHKLG---YIHRDIKPDNLLLDAKGHIKLSDFGLCT  149 (364)
T ss_pred             EEEEECCCCCcHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEeecccce
Confidence            9999999999999999854   346899999999999999999999999   9999999999999999999999999986


Q ss_pred             ccCCCC----------------------------------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHH
Q 011995          333 HIPETD----------------------------------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVL  372 (473)
Q Consensus       333 ~~~~~~----------------------------------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl  372 (473)
                      .+....                                        .....||+.|+|||++.+..++.++|||||||++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  229 (364)
T cd05599         150 GLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIM  229 (364)
T ss_pred             eccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHH
Confidence            542211                                        0123589999999999988899999999999999


Q ss_pred             HHHHcCCCCCCCCChHHHHhHh-hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC---HHHH
Q 011995          373 LELLTGRKNLDSRHPKEERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---MRSI  448 (473)
Q Consensus       373 ~elltG~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt---~~ei  448 (473)
                      |||++|..||......+....+ .|....             ...  .....+.++.+++.+|+. +|.+|++   +.++
T Consensus       230 ~el~~G~~Pf~~~~~~~~~~~i~~~~~~~-------------~~~--~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~l  293 (364)
T cd05599         230 YEMLVGYPPFCSDNPQETYRKIINWKETL-------------QFP--DEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEI  293 (364)
T ss_pred             HHhhcCCCCCCCCCHHHHHHHHHcCCCcc-------------CCC--CCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHH
Confidence            9999999999876654432222 221110             000  011346788999999996 9999998   8888


Q ss_pred             HHH
Q 011995          449 FEE  451 (473)
Q Consensus       449 l~~  451 (473)
                      ++.
T Consensus       294 l~h  296 (364)
T cd05599         294 KSH  296 (364)
T ss_pred             hcC
Confidence            773

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=7.6e-40  Score=321.72  Aligned_cols=260  Identities=18%  Similarity=0.308  Sum_probs=204.3

Q ss_pred             hcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|...+.||+|+||.||++....  .......++++..+........+.+.+|+++++++ +|+||+++++++...  
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~--  111 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG--  111 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC--
Confidence            3578889999999999999997532  12234455555444333344456789999999999 799999999998766  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..++||||+.+|+|.+++.... ...+++.++..++.|++.||.|||+++   |+|+||||+|||++.++.++|+|||+
T Consensus       112 ~~~~lv~e~~~~~~L~~~i~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~dfg~  187 (302)
T cd05055         112 GPILVITEYCCYGDLLNFLRRKR-ESFLTLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNVLLTHGKIVKICDFGL  187 (302)
T ss_pred             CceEEEEEcCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---eehhhhccceEEEcCCCeEEECCCcc
Confidence            78999999999999999996532 334899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +........    ....++..|+|||.+.+..++.++|||||||++|||++ |..||..............      .. 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~------~~-  260 (302)
T cd05055         188 ARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIK------EG-  260 (302)
T ss_pred             cccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHH------cC-
Confidence            876543221    12234578999999998889999999999999999998 9999976554332211100      00 


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                               .....+...+.++.+|+.+||..+|++|||+.+|++.|+++
T Consensus       261 ---------~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         261 ---------YRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             ---------CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence                     00011223457899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=7.7e-40  Score=322.28  Aligned_cols=262  Identities=21%  Similarity=0.358  Sum_probs=207.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCC----eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA----STSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ++|.+.+.||+|+||.||++...+..    .....+++++............+.+|++++..+ +|+||+++++++... 
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~-   96 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD-   96 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-
Confidence            57899999999999999999753321    123345555554333344556788999999999 899999999998766 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                       +..++||||+++|+|.+++.....             ...+++..++.++.|++.||+|||+.+   ++||||||+|||
T Consensus        97 -~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nil  172 (307)
T cd05098          97 -GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVL  172 (307)
T ss_pred             -CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHHheE
Confidence             789999999999999999965321             235899999999999999999999998   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ++.++.+||+|||++........    .....+..|+|||.+.+..++.++|||||||++|||++ |..||......+..
T Consensus       173 l~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~  252 (307)
T cd05098         173 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF  252 (307)
T ss_pred             EcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHH
Confidence            99999999999999876543221    11223468999999998889999999999999999998 88999765543322


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ..+....                 ....+...+.++.+++.+||..+|.+||++.+|++.|+++...
T Consensus       253 ~~~~~~~-----------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         253 KLLKEGH-----------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HHHHcCC-----------------CCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            2221100                 0112334567899999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3.3e-40  Score=334.85  Aligned_cols=250  Identities=18%  Similarity=0.198  Sum_probs=196.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .|+..+.||+|+||+||+|....   +.+.+++|+.....  .......+.+|++++..++|+||+++++++.+.  +.+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~---~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~--~~~   76 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVD---THALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDK--DNL   76 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECC---CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecC--CEE
Confidence            57888999999999999998544   34556666655432  233456789999999999999999999999865  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+||||+++|+|.+++..   ...+++..+..++.||+.||+|||..+   |+||||||+||||+.++.+||+|||++..
T Consensus        77 ~lv~E~~~gg~L~~~l~~---~~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDlKp~Nili~~~~~~kL~DFGl~~~  150 (381)
T cd05626          77 YFVMDYIPGGDMMSLLIR---MEVFPEVLARFYIAELTLAIESVHKMG---FIHRDIKPDNILIDLDGHIKLTDFGLCTG  150 (381)
T ss_pred             EEEEecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence            999999999999999854   346889999999999999999999999   99999999999999999999999998753


Q ss_pred             cCCC-------------------------------------------------CccCcccccccCChhhhhcCCCCCcCC
Q 011995          334 IPET-------------------------------------------------DISNSSVAAANLSVETLERGLLTPKSN  364 (473)
Q Consensus       334 ~~~~-------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~s~~sD  364 (473)
                      +...                                                 ......||+.|+|||++.+..++.++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~D  230 (381)
T cd05626         151 FRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCD  230 (381)
T ss_pred             cccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccc
Confidence            3100                                                 011346889999999999888999999


Q ss_pred             chHHHHHHHHHHcCCCCCCCCChHHHHh-HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHH--hcccCCCC
Q 011995          365 VWSFGIVLLELLTGRKNLDSRHPKEERN-LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALR--CLQKEPSE  441 (473)
Q Consensus       365 vwSlGvvl~elltG~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~--cl~~dP~~  441 (473)
                      ||||||++|||++|..||......+... ++.|....               ........+.++.+|+.+  |+..++..
T Consensus       231 iwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~~~~---------------~~~~~~~~s~~~~dli~~ll~~~~~~~~  295 (381)
T cd05626         231 WWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTL---------------HIPPQVKLSPEAVDLITKLCCSAEERLG  295 (381)
T ss_pred             eeehhhHHHHHHhCCCCCcCCCHHHHHHHHHcccccc---------------CCCCCCCCCHHHHHHHHHHccCcccccC
Confidence            9999999999999999998765443222 22221110               000012356788899988  55666777


Q ss_pred             CCCHHHHHHH
Q 011995          442 RPTMRSIFEE  451 (473)
Q Consensus       442 RPt~~eil~~  451 (473)
                      |+++.+|++.
T Consensus       296 R~~~~~~l~h  305 (381)
T cd05626         296 RNGADDIKAH  305 (381)
T ss_pred             CCCHHHHhcC
Confidence            9999999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.2e-39  Score=312.77  Aligned_cols=254  Identities=20%  Similarity=0.370  Sum_probs=195.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|+||.||+|.+.+.......+++|.............+.+|+.+++.++||||+++++++...+ ...++||||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSE-GSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCC-CCcEEEEecC
Confidence            468999999999998755443334444544332223344678889999999999999999999876543 5678999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC--
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD--  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~--  338 (473)
                      .+|+|.+++...  ...+++..+..++.|++.||.|||+.+   ++||||||+|||++.++.+||+|||+++......  
T Consensus        80 ~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~  154 (262)
T cd05058          80 KHGDLRNFIRSE--THNPTVKDLIGFGLQVAKGMEYLASKK---FVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYY  154 (262)
T ss_pred             CCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCccccccccCCcce
Confidence            999999999643  334678888999999999999999998   9999999999999999999999999987553321  


Q ss_pred             ----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          339 ----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       339 ----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                          .....++..|+|||.+.+..++.++|||||||++|||++ |.+||...........+....             ..
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~-------------~~  221 (262)
T cd05058         155 SVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGR-------------RL  221 (262)
T ss_pred             eecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCC-------------CC
Confidence                112344668999999988889999999999999999999 566776544333222111100             00


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                          ..+...+..+.+++.+||..+|++||++.+|++.|+++..
T Consensus       222 ----~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         222 ----LQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             ----CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence                0122335678999999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.3e-39  Score=316.08  Aligned_cols=264  Identities=21%  Similarity=0.362  Sum_probs=208.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC-eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA-STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|.+.+.. .....++++.............+.+|+.+++.++|+||+++++++...+ ..
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~   83 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG-EP   83 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-CC
Confidence            467888899999999999999976522 1233344444333333445677899999999999999999999887643 67


Q ss_pred             eEEEEEeccCCChhhhhhcCCCC-----CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDG-----PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~-----~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                      .++++||+++|+|.+++......     ..+++..+..++.|++.||+|||+.+   ++|+||||+|||++.++.+||+|
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCHhhEEEcCCCcEEECC
Confidence            89999999999999998653222     56899999999999999999999998   99999999999999999999999


Q ss_pred             cCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccc
Q 011995          328 YGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       328 FGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      ||+++.+.....    ....++..|+|||++.+..++.++|||||||++||+++ |+.||...........+.       
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~-------  233 (280)
T cd05043         161 NALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLK-------  233 (280)
T ss_pred             CCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHH-------
Confidence            999986543321    12234567999999988889999999999999999999 999998765433222111       


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      .+...          ..+..++.++.+++.+||..||++|||+.++++.|+.+.++
T Consensus       234 ~~~~~----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         234 DGYRL----------AQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             cCCCC----------CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence            11000          11223457889999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=8.1e-40  Score=312.37  Aligned_cols=247  Identities=19%  Similarity=0.371  Sum_probs=195.1

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|+||.||+|....+   .+.++++.............+.+|+++++.++|+||+++++++...  ...++||||+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~---~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~lv~e~~   75 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRAD---NTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK--QPIYIVMELV   75 (252)
T ss_pred             CccCcccCccEEEEEEecC---CceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC--CCeEEEEeec
Confidence            3699999999999986543   2334444433223344557799999999999999999999998765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS  340 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~  340 (473)
                      ++++|.+++...  ...+++..+..++.|++.||.|||+++   |+|+||||+|||++.++.+||+|||++.........
T Consensus        76 ~~~~L~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (252)
T cd05084          76 QGGDFLTFLRTE--GPRLKVKELIQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYA  150 (252)
T ss_pred             cCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEEcCCCcEEECccccCccccccccc
Confidence            999999998542  346899999999999999999999999   999999999999999999999999998765432211


Q ss_pred             Cc----ccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          341 NS----SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       341 ~~----~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                      ..    ..+..|+|||.+.++.++.++|||||||++|||++ |..||...........+...                 .
T Consensus       151 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~-----------------~  213 (252)
T cd05084         151 STGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQG-----------------V  213 (252)
T ss_pred             ccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcC-----------------C
Confidence            11    22356999999998889999999999999999997 99999765543322222110                 0


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      ...++...+..+.+++.+||+.||++|||+.+|++.|++
T Consensus       214 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         214 RLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             CCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            111233456789999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=8.1e-40  Score=313.89  Aligned_cols=255  Identities=23%  Similarity=0.413  Sum_probs=204.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ...+|...+.||.|+||.||+|...++    +.+++++.... .......+.+|+.+++.++|+||+++++++...  +.
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~----~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~   76 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNR----VRVAIKILKSD-DLLKQQDFQKEVQALKRLRHKHLISLFAVCSVG--EP   76 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCC----CcEEEEecccc-chhhHHHHHHHHHHHhcCCCcchhheeeeEecC--CC
Confidence            356788889999999999999987653    22333333221 222456788999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++... .+..+++..+..++.|++.||.|||+++   |+|+||||+||+++.++.+||+|||++.
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~h~dl~~~nilv~~~~~~kl~d~g~~~  152 (261)
T cd05148          77 VYIITELMEKGSLLAFLRSP-EGQVLPVASLIDMACQVAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGLAR  152 (261)
T ss_pred             eEEEEeecccCCHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccCcceEEEcCCceEEEccccchh
Confidence            99999999999999999654 3456899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          333 HIPETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       333 ~~~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .......  ....++..|++||.+.+..++.++||||||+++|+|++ |+.||......+....+..             
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~-------------  219 (261)
T cd05148         153 LIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITA-------------  219 (261)
T ss_pred             hcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHh-------------
Confidence            6643321  12234568999999988889999999999999999998 8999977654333222210             


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                          ......+..++..+.+++.+||+.||.+|||+.+|++.|+.+
T Consensus       220 ----~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         220 ----GYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             ----CCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence                001112345567899999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-41  Score=332.84  Aligned_cols=260  Identities=19%  Similarity=0.310  Sum_probs=222.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+....++||.|.||.||.|.|.....+     ++|+.++......++|+.|..+|+.++|||+|+|+|+|..+  ..+|
T Consensus       267 tdItMkhKLGGGQYGeVYeGvWKkyslT-----vAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~E--pPFY  339 (1157)
T KOG4278|consen  267 TDITMKHKLGGGQYGEVYEGVWKKYSLT-----VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHE--PPFY  339 (1157)
T ss_pred             hheeeeeccCCCcccceeeeeeecccee-----eehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccC--CCeE
Confidence            3445568999999999999999876543     77778877778889999999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||.|||..|+|.++|+... ..-++....++++.||..|++||..++   +|||||...|+|+.++-.|||+||||++++
T Consensus       340 IiTEfM~yGNLLdYLRecn-r~ev~avvLlyMAtQIsSaMeYLEkkn---FIHRDLAARNCLVgEnhiVKvADFGLsRlM  415 (1157)
T KOG4278|consen  340 IITEFMCYGNLLDYLRECN-RSEVPAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHIVKVADFGLSRLM  415 (1157)
T ss_pred             EEEecccCccHHHHHHHhc-hhhcchhHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccccccceEEeeccchhhhh
Confidence            9999999999999997653 345777888999999999999999999   999999999999999999999999999999


Q ss_pred             CCCCccCccc---ccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDISNSSV---AAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~~~~~---t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ..+.++...|   .+.|.|||-+....++.++|||+|||+|||+.| |..||.+.+..+...+.+       .+.+    
T Consensus       416 tgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLE-------kgyR----  484 (1157)
T KOG4278|consen  416 TGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLE-------KGYR----  484 (1157)
T ss_pred             cCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHh-------cccc----
Confidence            8776655444   478999999999999999999999999999987 889999876555443332       2212    


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCC
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS  462 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~  462 (473)
                            -+-|..|++.+.+|+..||+..|.+||+++||-+.|+.|.+..+.+
T Consensus       485 ------M~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~sSis  530 (1157)
T KOG4278|consen  485 ------MDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSSSIS  530 (1157)
T ss_pred             ------ccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhcccccc
Confidence                  2237788899999999999999999999999999999888766543

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=7.5e-40  Score=315.17  Aligned_cols=260  Identities=18%  Similarity=0.229  Sum_probs=203.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||.||+|+...+   .+.+++|.....  ........+.+|+++++.++||||+++++++...  +.
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   76 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLD---RKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIED--NE   76 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCC---CCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEEC--Ce
Confidence            5788999999999999999986443   334445544322  2334456788999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .++|+||+++|+|.+++.... ....+++..+..++.|++.||.|||+++   ++|+||||+|||++.++.++|+|||++
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~nil~~~~~~~~l~d~g~~  153 (267)
T cd08228          77 LNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             EEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCCHHHEEEcCCCCEEECccccc
Confidence            899999999999998885322 2345889999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ........  ....++..|+|||.+.+..++.++||||||+++|||++|+.||........ ......          ..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~-~~~~~~----------~~  222 (267)
T cd08228         154 RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLF-SLCQKI----------EQ  222 (267)
T ss_pred             eeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHH-HHHHHH----------hc
Confidence            77643321  234577899999999888899999999999999999999999965432111 111100          00


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      ...+   .......+..+.+++.+||..+|++||++.+|++.|+++.
T Consensus       223 ~~~~---~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         223 CDYP---PLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             CCCC---CCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            0001   1112345678999999999999999999999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3.9e-40  Score=332.20  Aligned_cols=251  Identities=16%  Similarity=0.212  Sum_probs=196.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||+||+|....   ..+.+++|+.....  .......+.+|+.++..++|+||+++++++.+.  ..
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~--~~   75 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKD---TGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDK--LN   75 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECC---CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecC--Ce
Confidence            478889999999999999998543   34556666655321  223346788999999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +||||||+++|+|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++
T Consensus        76 ~~lv~E~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~lH~~g---ivHrDlKp~NILi~~~~~vkL~DFGla~  149 (363)
T cd05628          76 LYLIMEFLPGGDMMTLLMK---KDTLTEEETQFYIAETVLAIDSIHQLG---FIHRDIKPDNLLLDSKGHVKLSDFGLCT  149 (363)
T ss_pred             EEEEEcCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCCEEEeeccCcc
Confidence            9999999999999999954   346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCC-------------------------------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHH
Q 011995          333 HIPETD-------------------------------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLEL  375 (473)
Q Consensus       333 ~~~~~~-------------------------------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~el  375 (473)
                      .+....                                     ....+||+.|+|||++.+..++.++|||||||++|||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~el  229 (363)
T cd05628         150 GLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEM  229 (363)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHH
Confidence            542210                                     1234689999999999998999999999999999999


Q ss_pred             HcCCCCCCCCChHHHHhHhh-hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcc--cCCCCCCCHHHHHHH
Q 011995          376 LTGRKNLDSRHPKEERNLVK-WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ--KEPSERPTMRSIFEE  451 (473)
Q Consensus       376 ltG~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~--~dP~~RPt~~eil~~  451 (473)
                      ++|..||.+....+....+. |....             .+..  ....+.++.+++.+++.  .++..||+++||++.
T Consensus       230 l~G~~Pf~~~~~~~~~~~i~~~~~~~-------------~~p~--~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         230 LIGYPPFCSETPQETYKKVMNWKETL-------------IFPP--EVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             HhCCCCCCCCCHHHHHHHHHcCcCcc-------------cCCC--cCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            99999998766544333221 11100             0000  11245678888887553  344456899999886

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=3.8e-40  Score=327.12  Aligned_cols=245  Identities=19%  Similarity=0.285  Sum_probs=193.3

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHH---HhCCCCCcccceeeeecCCCC
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTL---ASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l---~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      |.+.+.||+|+||.||+|....+   .+.+++|+.....  .....+.+.+|+.++   ..++||||+++++++...  +
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~--~   75 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKT---GELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTE--D   75 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcC--C
Confidence            56678999999999999986443   3455566554321  222345566776655   566899999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..|+||||+++|+|..++..    ..+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++
T Consensus        76 ~~~lv~E~~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrdlkp~Nill~~~~~~kL~Dfg~~  148 (324)
T cd05589          76 HVCFVMEYAAGGDLMMHIHT----DVFSEPRAVFYAACVVLGLQYLHENK---IVYRDLKLDNLLLDTEGFVKIADFGLC  148 (324)
T ss_pred             EEEEEEcCCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCcEEeCcccCC
Confidence            89999999999999988842    35999999999999999999999999   999999999999999999999999998


Q ss_pred             cccCC--CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPE--TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~--~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....  .......+++.|||||.+.+..++.++|||||||++|||++|..||...........+....           
T Consensus       149 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~-----------  217 (324)
T cd05589         149 KEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDE-----------  217 (324)
T ss_pred             ccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC-----------
Confidence            75422  22234568899999999998889999999999999999999999998765443332221110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                             ..++...+..+.+++.+||+.||.+||     ++.++++.
T Consensus       218 -------~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~  257 (324)
T cd05589         218 -------VRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQ  257 (324)
T ss_pred             -------CCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhC
Confidence                   012344567889999999999999999     57777663

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-40  Score=333.42  Aligned_cols=250  Identities=19%  Similarity=0.261  Sum_probs=201.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||+|....   ..+.+++|+.....  .......+.+|++++..++|+||+++++++.++  +.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~   75 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKD---TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDE--EH   75 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECC---CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecC--Ce
Confidence            468889999999999999998653   34555666654321  223456788999999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~g---iiH~Dlkp~NIll~~~~~~kL~Dfg~~~  149 (350)
T cd05573          76 LYLVMEYMPGGDLMNLLIRK---DVFPEETARFYIAELVLALDSVHKLG---FIHRDIKPDNILIDADGHIKLADFGLCK  149 (350)
T ss_pred             EEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEeecCCCCc
Confidence            99999999999999999543   46899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCC-------------------------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCC
Q 011995          333 HIPETD-------------------------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKN  381 (473)
Q Consensus       333 ~~~~~~-------------------------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p  381 (473)
                      ......                               .....+|+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~P  229 (350)
T cd05573         150 KMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPP  229 (350)
T ss_pred             cCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCC
Confidence            654332                               2334678999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHhHh-hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-HHHHHHH
Q 011995          382 LDSRHPKEERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-MRSIFEE  451 (473)
Q Consensus       382 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~eil~~  451 (473)
                      |...........+ .|....             .+.  ....++.++.+||.+||. ||.+||+ +.++++.
T Consensus       230 f~~~~~~~~~~~i~~~~~~~-------------~~p--~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         230 FYSDTLQETYNKIINWKESL-------------RFP--PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCCCCHHHHHHHHhccCCcc-------------cCC--CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            9876644433222 111100             000  011256889999999997 9999999 9999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=8.4e-40  Score=317.84  Aligned_cols=257  Identities=21%  Similarity=0.313  Sum_probs=201.9

Q ss_pred             ccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +|...+.||+|+||.||+|...+..  ...+.+++|+............+.+|+.++..++||||+++++++...  ...
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~--~~~   83 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKE--QPL   83 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC--Cce
Confidence            4556689999999999999875432  233445555544333333456788999999999999999999998766  678


Q ss_pred             EEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ++++||+.+++|.+++....             ....+++..+..++.|++.||.|||+++   |+||||||+|||++.+
T Consensus        84 ~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g---i~H~dlkp~Nil~~~~  160 (283)
T cd05091          84 SMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDK  160 (283)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhheEecCC
Confidence            99999999999999985321             1235889999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          321 FSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      +.+||+|||+++.......    ....+++.|+|||.+.++.++.++|||||||++|||++ |..||.+....+....+.
T Consensus       161 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~  240 (283)
T cd05091         161 LNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIR  240 (283)
T ss_pred             CceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            9999999999876543221    22344678999999988889999999999999999998 888987765443322221


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      ..                . ...++..++..+.+|+.+||+.+|.+||++.+|+..|+.
T Consensus       241 ~~----------------~-~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         241 NR----------------Q-VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             cC----------------C-cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            10                0 011234556789999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1.4e-39  Score=313.69  Aligned_cols=257  Identities=18%  Similarity=0.344  Sum_probs=202.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|.+.+.||+|+||.||+|...........++++.............+.+|+.++.+++||||+++++++..+  +..+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   81 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS--KPVM   81 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC--CccE
Confidence            57888899999999999999864333333344444443333334457889999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++.++..++.|++.||.|||+.+   ++|+||||+|||++.++.++|+|||++..+
T Consensus        82 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd05066          82 IVTEYMENGSLDAFLRKH--DGQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVL  156 (267)
T ss_pred             EEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeehhhchhcEEECCCCeEEeCCCCccccc
Confidence            999999999999999643  346899999999999999999999999   999999999999999999999999998866


Q ss_pred             CCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          335 PETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       335 ~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .....     .....+..|++||.+.+..++.++|+|||||++||+++ |..||......+....+.       ....  
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~-------~~~~--  227 (267)
T cd05066         157 EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIE-------EGYR--  227 (267)
T ss_pred             ccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHh-------CCCc--
Confidence            43221     11122457999999998889999999999999999886 999997655433222111       0000  


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                              ...+..++..+.+++.+||+.+|.+||++.++++.|+++
T Consensus       228 --------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         228 --------LPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             --------CCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence                    011233457889999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1.6e-39  Score=318.22  Aligned_cols=265  Identities=19%  Similarity=0.328  Sum_probs=200.8

Q ss_pred             cccccCcceeecCCceEEEEEECCC-------------CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDD-------------ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL  241 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l  241 (473)
                      ++|++.+.||+|+||.||++...+.             ......+++++............+.+|+.+++.++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            4688889999999999999864321             112233445544433344456789999999999999999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCCC--------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCC
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD--------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA  313 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~--------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~  313 (473)
                      ++++...  +..++||||+++|+|.+++.....        ...+++..+..++.|++.||+|||+.+   ++|+||||+
T Consensus        85 ~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dlkp~  159 (296)
T cd05095          85 LAVCITS--DPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATR  159 (296)
T ss_pred             EEEEecC--CccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC---eecccCChh
Confidence            9998776  678999999999999999865321        234788899999999999999999999   999999999


Q ss_pred             ceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc--CCCCCCCCCh
Q 011995          314 NIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT--GRKNLDSRHP  387 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt--G~~p~~~~~~  387 (473)
                      |||++.++.++|+|||++..+.....    .....+..|++||...++.++.++|||||||++|||++  |..||.....
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~  239 (296)
T cd05095         160 NCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSD  239 (296)
T ss_pred             eEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccCh
Confidence            99999999999999999876543321    12233578999999988889999999999999999998  7788876544


Q ss_pred             HHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .+.......   +......  ..     ....+..++..+.+|+.+||+.||.+||++.+|++.|++
T Consensus       240 ~~~~~~~~~---~~~~~~~--~~-----~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         240 EQVIENTGE---FFRDQGR--QV-----YLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             HHHHHHHHH---HHhhccc--cc-----cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            332211100   0000000  00     001122345789999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=4.9e-40  Score=327.70  Aligned_cols=266  Identities=16%  Similarity=0.229  Sum_probs=194.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC---C
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS---D  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~---~  251 (473)
                      +|+..+.||+|+||.||+|....+   +..+++|..... ........+.+|+.+++.++||||+++++++.....   .
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   77 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHT---GEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFK   77 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCC---CCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCc
Confidence            477889999999999999985433   344555544322 122344678899999999999999999998864321   3


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..|+||||+. ++|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kL~Dfg~~  150 (338)
T cd07859          78 DIYVVFELME-SDLHQVIKA---NDDLTPEHHQFFLYQLLRALKYIHTAN---VFHRDLKPKNILANADCKLKICDFGLA  150 (338)
T ss_pred             eEEEEEecCC-CCHHHHHHh---cccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEccCccc
Confidence            5899999995 689988843   346899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC-----ccCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc--cc--
Q 011995          332 GHIPETD-----ISNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR--PF--  400 (473)
Q Consensus       332 ~~~~~~~-----~~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~--~~--  400 (473)
                      +......     .....++..|+|||++.+  ..++.++|||||||++|||++|++||.+.........+....  +.  
T Consensus       151 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd07859         151 RVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPE  230 (338)
T ss_pred             cccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence            7653221     123468899999999876  578999999999999999999999998765433222111000  00  


Q ss_pred             ----ccccc--ccccccccccCCCC---CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 ----LADDC--RLSLIMDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 ----~~~~~--~~~~~~~~~l~~~~---~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          +....  .....+.......+   ....+..+.+++.+||+.||++|||+.|+++.
T Consensus       231 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         231 TISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             HHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                00000  00000000000000   01245678899999999999999999999975

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.3e-39  Score=320.17  Aligned_cols=263  Identities=19%  Similarity=0.341  Sum_probs=206.6

Q ss_pred             hcccccCcceeecCCceEEEEEECC----CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~  248 (473)
                      .++|.+.+.||+|+||.||+|....    .......+++++............+.+|+.++..+ +||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            4678888999999999999997532    12222344444443332344567899999999999 899999999998766


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                        ...++||||+++|+|.+++.....             ...+++..+..++.||+.||.|||+++   |+||||||+||
T Consensus        94 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Ni  168 (304)
T cd05101          94 --GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLAARNV  168 (304)
T ss_pred             --CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC---eeecccccceE
Confidence              788999999999999999965321             235789999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      |++.++.+||+|||++........    ....++..|+|||++.+..++.++|||||||++|||++ |..||......+.
T Consensus       169 li~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~  248 (304)
T cd05101         169 LVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL  248 (304)
T ss_pred             EEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHH
Confidence            999999999999999986643221    12234568999999988889999999999999999998 8888876554443


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ...+..       ...          ...+..++..+.+|+.+||+.+|.+||++.++++.|+++..-
T Consensus       249 ~~~~~~-------~~~----------~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         249 FKLLKE-------GHR----------MDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             HHHHHc-------CCc----------CCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence            322210       000          011334567899999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-40  Score=335.40  Aligned_cols=250  Identities=16%  Similarity=0.202  Sum_probs=196.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||++....   ..+.+++|+.....  .......+.+|++++..++|||||++++++.+.  +.
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~--~~   75 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKD---TGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDA--QY   75 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECC---CCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcC--Ce
Confidence            478888999999999999998543   34555666554321  233456788999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +||||||+++|+|.+++..   ...+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+++
T Consensus        76 ~~lv~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~ql~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629          76 LYLIMEFLPGGDLMTMLIK---YDTFSEDVTRFYMAECVLAIEAVHKLG---FIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             eEEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEEeeccccc
Confidence            9999999999999999853   346889999999999999999999999   9999999999999999999999999986


Q ss_pred             ccCCCC-------------------------------------------------ccCcccccccCChhhhhcCCCCCcC
Q 011995          333 HIPETD-------------------------------------------------ISNSSVAAANLSVETLERGLLTPKS  363 (473)
Q Consensus       333 ~~~~~~-------------------------------------------------~~~~~~t~~y~aPE~~~~~~~s~~s  363 (473)
                      .+....                                                 .....||+.|+|||++.+..++.++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  229 (377)
T cd05629         150 GFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQEC  229 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCce
Confidence            331100                                                 0023588999999999988899999


Q ss_pred             CchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 011995          364 NVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER  442 (473)
Q Consensus       364 DvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~R  442 (473)
                      |||||||++|||++|..||......+....+ .|....             .+..  ....+.++.+|+.+||. +|.+|
T Consensus       230 DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~-------------~~p~--~~~~s~~~~dli~~lL~-~~~~r  293 (377)
T cd05629         230 DWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETL-------------YFPD--DIHLSVEAEDLIRRLIT-NAENR  293 (377)
T ss_pred             eeEecchhhhhhhcCCCCCCCCCHHHHHHHHHccCCcc-------------CCCC--CCCCCHHHHHHHHHHhc-CHhhc
Confidence            9999999999999999999876654332221 221100             0000  11345788999999997 67765


Q ss_pred             ---CCHHHHHHH
Q 011995          443 ---PTMRSIFEE  451 (473)
Q Consensus       443 ---Pt~~eil~~  451 (473)
                         +++.++++.
T Consensus       294 ~~r~~~~~~l~h  305 (377)
T cd05629         294 LGRGGAHEIKSH  305 (377)
T ss_pred             CCCCCHHHHhcC
Confidence               599998875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.8e-40  Score=319.62  Aligned_cols=265  Identities=18%  Similarity=0.327  Sum_probs=199.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-----------eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCccccee
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-----------TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLG  243 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g  243 (473)
                      ++|++.+.||+|+||.||++...+...           ....+++|+.+..........|.+|++++.+++|+||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            478888999999999999997643211           112344444443333444567999999999999999999999


Q ss_pred             eeecCCCCceEEEEEeccCCChhhhhhcCC---------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCc
Q 011995          244 FHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTAN  314 (473)
Q Consensus       244 ~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~---------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~N  314 (473)
                      ++...  +..++||||+++++|.+++....         ....+++..++.++.|++.||+|||+.+   ++|+||||+|
T Consensus        85 ~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~N  159 (295)
T cd05097          85 VCVSD--DPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN---FVHRDLATRN  159 (295)
T ss_pred             EEcCC--CccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC---eeccccChhh
Confidence            98765  78999999999999999985431         1124789999999999999999999999   9999999999


Q ss_pred             eeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc--CCCCCCCCChH
Q 011995          315 IQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT--GRKNLDSRHPK  388 (473)
Q Consensus       315 ILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt--G~~p~~~~~~~  388 (473)
                      ||++.++.+||+|||++........    ....++..|+|||.+.++.++.++|||||||++|||++  |..||......
T Consensus       160 ill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~  239 (295)
T cd05097         160 CLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE  239 (295)
T ss_pred             EEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChH
Confidence            9999999999999999876543221    12234568999999988889999999999999999988  66788765443


Q ss_pred             HHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .....+..   +.........       ...+...+..+.+|+.+||+.||++||++.+|++.|++
T Consensus       240 ~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         240 QVIENTGE---FFRNQGRQIY-------LSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             HHHHHHHH---hhhhcccccc-------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            32211110   0000000000       00122345789999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.5e-39  Score=318.12  Aligned_cols=265  Identities=22%  Similarity=0.378  Sum_probs=203.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCee-------------eeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAST-------------SKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL  241 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l  241 (473)
                      .+|++.+.||+|+||.||+|...+....             ...+++++............+.+|++++.+++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            5788889999999999999987543221             133445544433344556789999999999999999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCC--------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCC
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRS--------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA  313 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~--------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~  313 (473)
                      ++++..+  +..++||||+++++|.+++....        ....+++..+..++.|++.||+|||+++   |+|+||||+
T Consensus        85 ~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~---i~H~dlkp~  159 (296)
T cd05051          85 LGVCTVD--PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN---FVHRDLATR  159 (296)
T ss_pred             EEEEecC--CCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC---ccccccchh
Confidence            9998766  78999999999999999986532        1126899999999999999999999999   999999999


Q ss_pred             ceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc--CCCCCCCCCh
Q 011995          314 NIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT--GRKNLDSRHP  387 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt--G~~p~~~~~~  387 (473)
                      ||+++.++.++|+|||++........    ....++..|+|||.+.+..++.++|||||||++|||++  |..||.....
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~  239 (296)
T cd05051         160 NCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD  239 (296)
T ss_pred             ceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh
Confidence            99999999999999999876543322    22344678999999988889999999999999999998  7788866543


Q ss_pred             HHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .......   .......       ........+..++.++.+++.+||+.||.+|||+.+|++.|++
T Consensus       240 ~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         240 QQVIENA---GHFFRDD-------GRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             HHHHHHH---Hhccccc-------cccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence            3321111   0010000       0000011123455789999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.9e-40  Score=316.03  Aligned_cols=249  Identities=21%  Similarity=0.226  Sum_probs=204.1

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .|+..+.||.|.-|+||++.+.+..   ..+|+||+....  ......+...|-+||..+.||.++.||..+..+  ...
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~---~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~--~~~  152 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTN---CLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETD--KYS  152 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCC---ceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeecc--cee
Confidence            4455599999999999999976644   677888876542  334456778899999999999999999999877  899


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |||||||+||+|..+++.+ .+..|++..+..++.+|+.||+|||..|   ||+|||||+||||.++|++.|+||.|+..
T Consensus       153 cl~meyCpGGdL~~LrqkQ-p~~~fse~~aRFYaAEvl~ALEYLHmlG---ivYRDLKPENILvredGHIMLsDFDLS~~  228 (459)
T KOG0610|consen  153 CLVMEYCPGGDLHSLRQKQ-PGKRFSESAARFYAAEVLLALEYLHMLG---IVYRDLKPENILVREDGHIMLSDFDLSLR  228 (459)
T ss_pred             EEEEecCCCccHHHHHhhC-CCCccchhhHHHHHHHHHHHHHHHHhhc---eeeccCCcceeEEecCCcEEeeecccccc
Confidence            9999999999999988765 5778999999999999999999999999   99999999999999999999999998632


Q ss_pred             cCC-----------------------------------C-----------------------CccCcccccccCChhhhh
Q 011995          334 IPE-----------------------------------T-----------------------DISNSSVAAANLSVETLE  355 (473)
Q Consensus       334 ~~~-----------------------------------~-----------------------~~~~~~~t~~y~aPE~~~  355 (473)
                      +..                                   .                       .....+||-.|+|||++.
T Consensus       229 ~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~  308 (459)
T KOG0610|consen  229 CPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIR  308 (459)
T ss_pred             CCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeee
Confidence            210                                   0                       012346788899999999


Q ss_pred             cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhc
Q 011995          356 RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL  435 (473)
Q Consensus       356 ~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl  435 (473)
                      |+.-+.++|+|.|||++|||+.|..||.+.+..+....|-.                ..+.-.-...++..+++||+++|
T Consensus       309 G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~----------------~~l~Fp~~~~vs~~akDLIr~LL  372 (459)
T KOG0610|consen  309 GEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVG----------------QPLKFPEEPEVSSAAKDLIRKLL  372 (459)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhc----------------CCCcCCCCCcchhHHHHHHHHHh
Confidence            99999999999999999999999999999887765543321                11111112367789999999999


Q ss_pred             ccCCCCCCC----HHHHH
Q 011995          436 QKEPSERPT----MRSIF  449 (473)
Q Consensus       436 ~~dP~~RPt----~~eil  449 (473)
                      .+||.+|..    +.||-
T Consensus       373 vKdP~kRlg~~rGA~eIK  390 (459)
T KOG0610|consen  373 VKDPSKRLGSKRGAAEIK  390 (459)
T ss_pred             ccChhhhhccccchHHhh
Confidence            999999998    55553

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-39  Score=312.12  Aligned_cols=247  Identities=18%  Similarity=0.339  Sum_probs=196.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +|...+.||+|+||.||+|.+.+.    ..+++|+.  .........+.+|+++++.++|+||+++++++...  +..++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~----~~~~iK~~--~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~l   76 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGK----IDVAIKMI--REGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQ--RPIFI   76 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCC----ccEEEEEe--ccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCC--CceEE
Confidence            477779999999999999986533    22334433  22223345788999999999999999999988765  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+++++|.+++...  ...+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++...
T Consensus        77 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~  151 (256)
T cd05059          77 VTEYMANGCLLNYLRER--KGKLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYVL  151 (256)
T ss_pred             EEecCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHhhEEECCCCcEEECCcccceecc
Confidence            99999999999999643  236899999999999999999999999   9999999999999999999999999987664


Q ss_pred             CCCccCc---ccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          336 ETDISNS---SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       336 ~~~~~~~---~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .......   ..+..|+|||.+.+..++.++|||||||++|||++ |..||......+....+...              
T Consensus       152 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~--------------  217 (256)
T cd05059         152 DDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAG--------------  217 (256)
T ss_pred             cccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC--------------
Confidence            3322222   22357999999998889999999999999999999 89999765443322211100              


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                         .....+...+..+.+++.+||..+|++|||+.++++.|
T Consensus       218 ---~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         218 ---YRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             ---CcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence               00111334567899999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=8e-40  Score=318.15  Aligned_cols=274  Identities=19%  Similarity=0.259  Sum_probs=200.9

Q ss_pred             cccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+|++.+.||+|+||.||++.+.. +......++++.... ......+.+.+|++++..++||||+++++++...+...+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQH-STAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEecc-CCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            467788999999999999998642 222344445554332 233445678999999999999999999998866555678


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        83 ~lv~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~l~~aL~~LH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~  157 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKH--RERLDHRKLLLYASQICKGMEYLGSKR---YVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             EEEEEecCCCCHHHHHHhc--CcCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHhhEEECCCCeEEECCCccccc
Confidence            9999999999999998542  345899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCcc-----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDIS-----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~~-----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......     ....+..|+|||.+.+..++.++|||||||++|||++|..++.......... .............+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  236 (284)
T cd05081         158 LPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRM-MGNDKQGQMIVYHLI  236 (284)
T ss_pred             ccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhh-cccccccccchHHHH
Confidence            6433211     1122346999999988889999999999999999999887764332111000 000000000000000


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ...........+..++.++.+|+.+||..+|++|||+.+|++.|+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         237 ELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            01111111112334567899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.3e-39  Score=320.98  Aligned_cols=266  Identities=20%  Similarity=0.303  Sum_probs=202.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||++.....   ...++++............++.+|++++.+++||||+++++++..+  +.++
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~---~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~   75 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPS---GLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSD--GEIS   75 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCC---CeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC--CEEE
Confidence            4688899999999999999986543   3344454444333334456788999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++...   ..+++..+..++.|++.||.|||+. +   ++|+||||+|||++.++.+||+|||++..
T Consensus        76 lv~ey~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          76 ICMEHMDGGSLDQVLKKA---GRIPENILGKISIAVLRGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             EEeeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhhCC---EEECCCChHHEEEecCCcEEEccCCCccc
Confidence            999999999999999543   4689999999999999999999984 6   99999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc-------
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR-------  406 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------  406 (473)
                      ..........++..|+|||.+.+..++.++|||||||++|||++|..||........................       
T Consensus       150 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (308)
T cd06615         150 LIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGH  229 (308)
T ss_pred             ccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCC
Confidence            6544444557789999999998888999999999999999999999999765433222111110000000000       


Q ss_pred             -------------cccccccccCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          407 -------------LSLIMDPQLKGRFP-LKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       407 -------------~~~~~~~~l~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                                   ...+... .....+ ...+.++.+|+.+||..||++|||+.+|++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         230 PPDSPRPMAIFELLDYIVNE-PPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             CCCccchhhHHHHHHHHhcC-CCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence                         0000000 000011 12456799999999999999999999999873

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.1e-39  Score=312.57  Aligned_cols=249  Identities=18%  Similarity=0.328  Sum_probs=197.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|...+.||+|+||.||.|.+.+..    .  ++++...........+.+|+.++..++||||+++++++...  +..+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~----~--~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQY----D--VAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQ--RPIY   75 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCC----c--EEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccC--CCcE
Confidence            35777899999999999999865432    1  33333333333456799999999999999999999998765  6789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+|+|.+++...  ...+++..+..++.||+.||+|||+.+   ++|+||||+|||++.++.+||+|||+++..
T Consensus        76 lv~e~~~~~~l~~~i~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~d~g~~~~~  150 (256)
T cd05113          76 IVTEYMSNGCLLNYLREH--GKRFQPSQLLEMCKDVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSRYV  150 (256)
T ss_pred             EEEEcCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCCEEECCCccceec
Confidence            999999999999998643  236899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCCccC---cccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDISN---SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~~---~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .......   ..++..|++||.+.+..++.++|||||||++|||++ |..||...........+....       .    
T Consensus       151 ~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~-------~----  219 (256)
T cd05113         151 LDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL-------R----  219 (256)
T ss_pred             CCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCC-------C----
Confidence            4332222   234567999999988889999999999999999998 999997655433222221100       0    


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                            ...+...+..+.+++.+||+.||.+||++.+|++.|+
T Consensus       220 ------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         220 ------LYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence                  0112234578899999999999999999999998774

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-39  Score=311.14  Aligned_cols=250  Identities=20%  Similarity=0.339  Sum_probs=198.3

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|+||.||+|.+.......+.+++|...........+.+.+|+.+++.+.|+||+++++++..   +..++||||+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~~v~e~~   77 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG---EPLMLVMELA   77 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC---CceEEEEEeC
Confidence            4699999999999987554433345555554433333456789999999999999999999998753   5689999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS  340 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~  340 (473)
                      ++|+|.+++...   ..+++..+..++.|++.||+|||..+   ++|+||||+|||++.++.+||+|||++.........
T Consensus        78 ~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~  151 (257)
T cd05060          78 PLGPLLKYLKKR---REIPVSDLKELAHQVAMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY  151 (257)
T ss_pred             CCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHhhcC---eeccCcccceEEEcCCCcEEeccccccceeecCCcc
Confidence            999999999543   36899999999999999999999999   999999999999999999999999998766432211


Q ss_pred             -----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          341 -----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       341 -----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                           ...++..|+|||.+.+..++.++|||||||++|||++ |..||...........+....       .        
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~-------~--------  216 (257)
T cd05060         152 YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGE-------R--------  216 (257)
T ss_pred             cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCC-------c--------
Confidence                 1122357999999988889999999999999999998 999997765433322221110       0        


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                        ...+..++..+.+++.+||..+|.+||++.+|++.|+++.
T Consensus       217 --~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         217 --LPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             --CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence              0113345578999999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=2.2e-39  Score=312.82  Aligned_cols=257  Identities=18%  Similarity=0.353  Sum_probs=198.8

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC----CCc
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG----SDQ  252 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~----~~~  252 (473)
                      .+++.||+|+||.||+|.+.+... ...++++..... ........+.+|+++++.++|+||+++++++....    ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~-~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDS-ILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCC-eeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            456899999999999998765432 233444444332 23344677899999999999999999999875421    235


Q ss_pred             eEEEEEeccCCChhhhhhcC---CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGR---SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      .++||||+.+|+|.+++...   .....+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhheEEcCCCCEEECCCC
Confidence            78999999999999887422   12345899999999999999999999998   9999999999999999999999999


Q ss_pred             CCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccc
Q 011995          330 CAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       330 la~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      +++.......    .....+..|++||.+.+..++.++|||||||++|||++ |+.||...........+.       .+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~-------~~  230 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLR-------QG  230 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH-------cC
Confidence            9987643321    12234568999999998889999999999999999999 899997655433222111       00


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ...          ..+..++..+.+++.+||+.||++|||+.+|++.|+++
T Consensus       231 ~~~----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         231 NRL----------KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             CCC----------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            000          11234457789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-40  Score=319.24  Aligned_cols=253  Identities=20%  Similarity=0.260  Sum_probs=199.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +|+..+.||+|+||.||++....   ....+++++.....  .......+.+|+.+++.++|+||+++++++...  +.+
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   75 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRA---TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK--DAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcC---CCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCC--CeE
Confidence            47788999999999999998543   33455555544321  122345678899999999999999999988765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++... ....+++..+..++.|++.||.|||+.+   |+||||||+||++++++.++|+|||++..
T Consensus        76 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~  151 (285)
T cd05605          76 CLVLTLMNGGDLKFHIYNM-GNPGFDEERAVFYAAEITCGLEDLHRER---IVYRDLKPENILLDDYGHIRISDLGLAVE  151 (285)
T ss_pred             EEEEeccCCCcHHHHHHhc-CcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHEEECCCCCEEEeeCCCcee
Confidence            9999999999999888643 2346899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...... ....++..|+|||.+.+..++.++|||||||++|||++|+.||.+.........+...   +.          
T Consensus       152 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~---~~----------  218 (285)
T cd05605         152 IPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERR---VK----------  218 (285)
T ss_pred             cCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHH---hh----------
Confidence            643322 3346789999999998888999999999999999999999999865433221111100   00          


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                       .....++...+..+.+|+.+||+.||.+||     ++.++++.
T Consensus       219 -~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         219 -EDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             -hcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence             001122445667899999999999999999     88888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=2.2e-39  Score=310.91  Aligned_cols=250  Identities=21%  Similarity=0.394  Sum_probs=198.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|++.+.||+|+||.||+|...++..    ++++  ...........+.+|+.++++++|+||+++++++..   ...+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~----~~~k--~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~---~~~~   76 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTK----VAVK--TLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSE---EPIY   76 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCce----eEEE--EecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEECC---CCcE
Confidence            467788999999999999998654432    2333  333333345679999999999999999999998743   5689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..+..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||++...
T Consensus        77 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~Nili~~~~~~~l~dfg~~~~~  152 (260)
T cd05070          77 IVTEYMSKGSLLDFLKDG-EGRALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGDGLVCKIADFGLARLI  152 (260)
T ss_pred             EEEEecCCCcHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEEeCCceEEeCCceeeeec
Confidence            999999999999998653 2346899999999999999999999999   999999999999999999999999999765


Q ss_pred             CCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ......   ...++..|+|||.+.+..++.++||||||+++|||++ |..||......+....+...             
T Consensus       153 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~-------------  219 (260)
T cd05070         153 EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERG-------------  219 (260)
T ss_pred             cCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-------------
Confidence            433221   2234567999999988889999999999999999999 89999765543322221100             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                          .....+...+..+.+|+.+||..||.+|||+.++++.|++
T Consensus       220 ----~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         220 ----YRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             ----CCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                0111233456789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=6.2e-40  Score=324.45  Aligned_cols=241  Identities=20%  Similarity=0.315  Sum_probs=191.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|...++   .+.+++|+.....  .......+..|..++..+ +||||+++++++.+.  +.+++||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~--~~~~lv~   75 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGT---NQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTK--ENLFFVM   75 (316)
T ss_pred             CeeeeCCCEEEEEEEECCC---CCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeC--CEEEEEE
Confidence            4699999999999986543   3445566554321  123345667788888764 999999999998776  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC--
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP--  335 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~--  335 (473)
                      ||+++|+|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++....  
T Consensus        76 ey~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~al~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~  149 (316)
T cd05619          76 EYLNGGDLMFHIQS---CHKFDLPRATFYAAEIICGLQFLHSKG---IVYRDLKLDNILLDTDGHIKIADFGMCKENMLG  149 (316)
T ss_pred             eCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEccCCcceECCCC
Confidence            99999999999853   346899999999999999999999999   9999999999999999999999999987532  


Q ss_pred             CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          336 ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       336 ~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                      ........+|..|+|||++.+..++.++|||||||++|||++|..||......+....+....              +  
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~--------------~--  213 (316)
T cd05619         150 DAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDN--------------P--  213 (316)
T ss_pred             CCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--------------C--
Confidence            222344568899999999998889999999999999999999999998766544333222111              1  


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMR-SIFE  450 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-eil~  450 (473)
                        .++...+.++.+++.+||+.||.+||++. ++++
T Consensus       214 --~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         214 --CYPRWLTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             --CCCccCCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence              12334557889999999999999999997 5643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=2.1e-39  Score=310.74  Aligned_cols=247  Identities=16%  Similarity=0.303  Sum_probs=197.0

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      .||+|+||.||+|.+... ...+.+++|+..... .....+++.+|+.+++.+.|+||+++++++..   +..++||||+
T Consensus         2 ~lg~G~~g~v~~~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~lv~e~~   77 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMK-KSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA---ESWMLVMELA   77 (257)
T ss_pred             cCCCcCCcceEEeEEecC-CCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC---CCcEEEEecC
Confidence            589999999999976432 234455566554332 23345788999999999999999999998753   5679999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc-
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI-  339 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~-  339 (473)
                      ++|+|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||.|||++.++.+||+|||++........ 
T Consensus        78 ~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~  151 (257)
T cd05116          78 ELGPLNKFLQK---NKHVTEKNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY  151 (257)
T ss_pred             CCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchhhEEEcCCCeEEECCCccccccCCCCCe
Confidence            99999999853   346899999999999999999999999   99999999999999999999999999976643321 


Q ss_pred             ----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          340 ----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       340 ----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                          ....++..|+|||.+....++.++|||||||++|||++ |..||......+....+...                 
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~-----------------  214 (257)
T cd05116         152 YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESG-----------------  214 (257)
T ss_pred             eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCC-----------------
Confidence                11223468999999988889999999999999999998 99999876544333222211                 


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      .....+..++.++.++|.+||+.||++||++.+|.+.|+..
T Consensus       215 ~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         215 ERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             CCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            01112345668899999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4.7e-40  Score=325.89  Aligned_cols=236  Identities=19%  Similarity=0.282  Sum_probs=189.6

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   .+.+++|+....  ........+..|+.++..+ +||||+++++++...  +.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~--~~~~iv~   75 (320)
T cd05590           1 RVLGKGSFGKVMLARLKES---GRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTP--DRLFFVM   75 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCC---CCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcC--CEEEEEE
Confidence            4699999999999986443   345556655432  1233456678899998877 799999999988765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..... 
T Consensus        76 Ey~~~g~L~~~i~~---~~~l~~~~~~~~~~ql~~~L~~lH~~~---ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~  149 (320)
T cd05590          76 EFVNGGDLMFHIQK---SRRFDEARARFYAAEITSALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFN  149 (320)
T ss_pred             cCCCCchHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcC
Confidence            99999999998854   346899999999999999999999999   99999999999999999999999999875422 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                       .......+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+....                 
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~-----------------  212 (320)
T cd05590         150 GKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDE-----------------  212 (320)
T ss_pred             CCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------------
Confidence             22334568999999999998889999999999999999999999998766544332221100                 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                       ..++...+.++.+++.+||+.||.+||++
T Consensus       213 -~~~~~~~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         213 -VVYPTWLSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             -CCCCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence             01233456788999999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.3e-40  Score=327.69  Aligned_cols=241  Identities=17%  Similarity=0.231  Sum_probs=194.3

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      +.||+|+||.||++....+...+..+++++..... .......+.+|+++|.+++||||+++++++..+  +..|+||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTE--GKLYLILDF   79 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcC--CEEEEEEcC
Confidence            67999999999999754344455666677665322 222345677899999999999999999998766  789999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC--
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET--  337 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~--  337 (473)
                      +.+|+|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++......  
T Consensus        80 ~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  153 (318)
T cd05582          80 LRGGDLFTRLSK---EVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK  153 (318)
T ss_pred             CCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC
Confidence            999999999843   346899999999999999999999999   999999999999999999999999998765433  


Q ss_pred             CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCC
Q 011995          338 DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG  417 (473)
Q Consensus       338 ~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  417 (473)
                      ......+++.|+|||.+.+..++.++|||||||++|||++|+.||...........+...                  ..
T Consensus       154 ~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~------------------~~  215 (318)
T cd05582         154 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKA------------------KL  215 (318)
T ss_pred             ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcC------------------CC
Confidence            223456889999999998888999999999999999999999999876544332222100                  00


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          418 RFPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       418 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                      .++...+.++.+++.+||+.||.+||++.+
T Consensus       216 ~~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         216 GMPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            123445678899999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2.6e-39  Score=311.11  Aligned_cols=252  Identities=22%  Similarity=0.372  Sum_probs=201.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|.+.+.||+|+||.||+|...++.    .+++  +.+.........+.+|+++++.++|+||+++++++..   +..+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~----~val--K~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~---~~~~   76 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTT----RVAI--KTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---EPIY   76 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCc----eEEE--EecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECC---CCcE
Confidence            46888999999999999999865442    2333  3333333345678999999999999999999988743   5679


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++... ....+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        77 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~Nill~~~~~~~L~dfg~~~~~  152 (262)
T cd05071          77 IVTEYMSKGSLLDFLKGE-MGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLI  152 (262)
T ss_pred             EEEEcCCCCcHHHHHhhc-cccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcccEEEcCCCcEEeccCCceeec
Confidence            999999999999999643 2346899999999999999999999999   999999999999999999999999999766


Q ss_pred             CCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ......   ...++..|++||++.+..++.++|||||||++|||++ |..||...........+....            
T Consensus       153 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~------------  220 (262)
T cd05071         153 EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY------------  220 (262)
T ss_pred             cccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCC------------
Confidence            433221   2234567999999988889999999999999999999 888997765443322221110            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                           ....+...+..+.+++.+||+.||++||++.++++.|++..
T Consensus       221 -----~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         221 -----RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             -----CCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence                 00113345678899999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=3.3e-39  Score=309.58  Aligned_cols=248  Identities=16%  Similarity=0.293  Sum_probs=195.9

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEecc
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF  261 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~  261 (473)
                      .||+|+||.||+|.+.... ....+++++..........+.+.+|+.++++++|+||+++++++..   ...++||||++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~-~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~---~~~~lv~e~~~   77 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRK-KQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA---EALMLVMEMAS   77 (257)
T ss_pred             ccCCCCcccEEEEEEecCC-CceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC---CCeEEEEEeCC
Confidence            3899999999999865322 2233445554433334445679999999999999999999998743   57899999999


Q ss_pred             CCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc--
Q 011995          262 HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI--  339 (473)
Q Consensus       262 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~--  339 (473)
                      +|+|.+++...  ...+++..++.++.|++.||.|||+++   ++||||||+|||++.++.+||+|||++........  
T Consensus        78 ~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~  152 (257)
T cd05115          78 GGPLNKFLSGK--KDEITVSNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYY  152 (257)
T ss_pred             CCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhcC---eeecccchheEEEcCCCcEEeccCCccccccCCccce
Confidence            99999998542  346899999999999999999999999   99999999999999999999999999875533211  


Q ss_pred             ---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          340 ---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       340 ---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                         ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+...                 .
T Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-----------------~  215 (257)
T cd05115         153 KARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQG-----------------K  215 (257)
T ss_pred             eccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCC-----------------C
Confidence               11122468999999988889999999999999999996 99999876544332222110                 0


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ...++..++.++.+++.+||..||++||++.+|.+.|+.+
T Consensus       216 ~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         216 RLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            1122345568899999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=4.8e-40  Score=326.35  Aligned_cols=246  Identities=19%  Similarity=0.238  Sum_probs=195.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCC-CcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHP-NLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~Hp-nIv~l~g~~~~~~~~~  252 (473)
                      +|...+.||+|+||.||+|...+.   .+.+++|+....  ......+.+..|++++..+.|+ +|+.+++++...  +.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~--~~   75 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGT---DELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM--DR   75 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcC--CE
Confidence            477889999999999999986543   345566655432  1234456788899999999765 577888887765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~E~~~~g~L~~~~~~---~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05587          76 LYFVMEYVNGGDLMYHIQQ---VGKFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCK  149 (324)
T ss_pred             EEEEEcCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEEcCCCCEEEeecCcce
Confidence            9999999999999998853   345899999999999999999999999   9999999999999999999999999986


Q ss_pred             ccC--CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIP--ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~--~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ...  ........+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+...             
T Consensus       150 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~-------------  216 (324)
T cd05587         150 ENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEH-------------  216 (324)
T ss_pred             ecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcC-------------
Confidence            432  22233456889999999999989999999999999999999999999876544333222100             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM-----RSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~  450 (473)
                           ...++...+.++.+++.+||..||.+|++.     .++++
T Consensus       217 -----~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  256 (324)
T cd05587         217 -----NVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIRE  256 (324)
T ss_pred             -----CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence                 012234456789999999999999999976     56654

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=6.9e-40  Score=324.11  Aligned_cols=241  Identities=20%  Similarity=0.298  Sum_probs=190.3

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|...+.   .+.+++|+.+...  .......+..|..++..+ +||||+++++++...  +.+++||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~--~~~~lv~   75 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGT---NEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTK--EHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcC--CEEEEEE
Confidence            4699999999999986543   3445566554321  223345566777777654 899999999988765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      ||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++......
T Consensus        76 e~~~gg~L~~~~~~---~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~  149 (316)
T cd05592          76 EYLNGGDLMFHIQS---SGRFDEARARFYAAEIICGLQFLHKKG---IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNG  149 (316)
T ss_pred             cCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHeEECCCCCEEEccCcCCeECCCC
Confidence            99999999998853   346899999999999999999999999   999999999999999999999999998754322


Q ss_pred             --CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          338 --DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       338 --~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                        ......+|+.|+|||.+.+..++.++|||||||++|||++|..||.+.........+....                 
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~-----------------  212 (316)
T cd05592         150 EGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDR-----------------  212 (316)
T ss_pred             CCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCC-----------------
Confidence              2234568999999999998889999999999999999999999998766543332221110                 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMR-SIFE  450 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-eil~  450 (473)
                       ..++...+.++.+++.+||+.||.+||++. ++++
T Consensus       213 -~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         213 -PHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             -CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence             112344567889999999999999999875 5543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2.3e-39  Score=312.46  Aligned_cols=257  Identities=19%  Similarity=0.338  Sum_probs=203.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|...+.||+|+||.||+|....+......+++|+............|..|+.+++.++||||+++++++..+  ...+
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~--~~~~   81 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS--RPVM   81 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCC--CceE
Confidence            35777899999999999999976554433445555544333444567899999999999999999999998665  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..+..++.|++.||.|||+.+   ++|+||||+|||++.++.+||+|||++...
T Consensus        82 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~~l~~al~~lH~~g---~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          82 IITEFMENGALDSFLRQN--DGQFTVIQLVGMLRGIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             EEEecCCCCcHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccChheEEEcCCCcEEECCCcccccc
Confidence            999999999999998543  346899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCCc----cCcc---cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          335 PETDI----SNSS---VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       335 ~~~~~----~~~~---~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      .....    ....   .+..|++||.+.+..++.++|||||||++|||++ |..||...........+..       ...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~-------~~~  229 (269)
T cd05065         157 EDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQ-------DYR  229 (269)
T ss_pred             ccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHc-------CCc
Confidence            43221    1111   1347999999998899999999999999999886 9999977654332222210       000


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                                ...+..++..+.+++.+||+.+|.+||++.+|+..|+++
T Consensus       230 ----------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         230 ----------LPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ----------CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                      011234457789999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=7e-40  Score=324.77  Aligned_cols=242  Identities=18%  Similarity=0.268  Sum_probs=193.7

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|...+.   ...+++|+....  ........+..|++++..+ +||||+++++++...  +..|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~--~~~~lv~   75 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGT---DEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTK--DRLFFVM   75 (321)
T ss_pred             CccccCCCeEEEEEEECCC---CCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC--CeEEEEE
Confidence            4699999999999986543   344556655432  1234456678899999876 899999999998766  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      ||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++......
T Consensus        76 E~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~  149 (321)
T cd05591          76 EYVNGGDLMFQIQR---SRKFDEPRSRFYAAEVTLALMFLHRHG---VIYRDLKLDNILLDAEGHCKLADFGMCKEGILN  149 (321)
T ss_pred             eCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeecccceecccC
Confidence            99999999988853   346899999999999999999999999   999999999999999999999999998754222


Q ss_pred             --CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          338 --DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       338 --~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                        ......+++.|+|||++.+..++.++|||||||++|||++|+.||...........+...      .           
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~------~-----------  212 (321)
T cd05591         150 GVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHD------D-----------  212 (321)
T ss_pred             CccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcC------C-----------
Confidence              233456889999999999889999999999999999999999999876654433222110      0           


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCC-------CHHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERP-------TMRSIFEE  451 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RP-------t~~eil~~  451 (473)
                       ..++...+.++.+++.+||+.||++|+       ++.++++.
T Consensus       213 -~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         213 -VLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             -CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence             012333567889999999999999999       78888754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=6.6e-40  Score=325.24  Aligned_cols=246  Identities=18%  Similarity=0.231  Sum_probs=196.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      +|...+.||+|+||.||+|....+   .+.+++|+.....  .......+..|..++..+ +|++|+++++++...  +.
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~--~~   75 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGT---DELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTM--DR   75 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecC--CE
Confidence            577889999999999999986543   3445566554321  223345677788888877 688999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +++||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~E~~~~g~L~~~~~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kL~DfG~~~  149 (323)
T cd05616          76 LYFVMEYVNGGDLMYQIQQ---VGRFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEecCCCHHHeEECCCCcEEEccCCCce
Confidence            9999999999999998854   245899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....  ......+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+...             
T Consensus       150 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~-------------  216 (323)
T cd05616         150 ENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEH-------------  216 (323)
T ss_pred             ecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhC-------------
Confidence            54322  223456889999999999999999999999999999999999999876654433222110             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM-----RSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~  450 (473)
                           ...++...+.++.+++.+||+.||.+|+++     .++++
T Consensus       217 -----~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~  256 (323)
T cd05616         217 -----NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  256 (323)
T ss_pred             -----CCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhc
Confidence                 012244566889999999999999999984     55553

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2.3e-39  Score=314.66  Aligned_cols=257  Identities=20%  Similarity=0.344  Sum_probs=200.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .+|.....||+|+||.||++...+..  .....++++... .........+.+|+++++.++|+||+++++++...  +.
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   81 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALK-EASESARQDFQREAELLTVLQHQHIVRFYGVCTEG--RP   81 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecC-cCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecC--Cc
Confidence            45677799999999999999754321  122333333322 22334456899999999999999999999998765  77


Q ss_pred             eEEEEEeccCCChhhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSD------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      .++||||+++|+|.+++.....            ...+++..++.++.|++.||+|||+.+   ++||||||+|||++++
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~nil~~~~  158 (280)
T cd05092          82 LLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCLVGQG  158 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC---eecccccHhhEEEcCC
Confidence            8999999999999999865321            135899999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          321 FSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      +.+||+|||++........    ....+++.|+|||.+.+..++.++|||||||++|||++ |.+||...........+.
T Consensus       159 ~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~  238 (280)
T cd05092         159 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECIT  238 (280)
T ss_pred             CCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHH
Confidence            9999999999876543221    12234578999999998889999999999999999998 999997655443332221


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      ....                 ...+..++..+.+|+.+||+.||.+||++.+|++.|++
T Consensus       239 ~~~~-----------------~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         239 QGRE-----------------LERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             cCcc-----------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            1100                 01123445778999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=5.1e-40  Score=338.95  Aligned_cols=266  Identities=15%  Similarity=0.181  Sum_probs=194.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC-----
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD-----  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~-----  248 (473)
                      ..+|...+.||+|+||.||+|...+.   ...+++|+....     .....+|+.+|+.++|+|||++++++...     
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~---~~~vAiK~i~~~-----~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~  136 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDT---SEKVAIKKVLQD-----PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKN  136 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCC---CCEEEEEEEecC-----cchHHHHHHHHHhcCCCCCcceeeeEeecccccC
Confidence            45799999999999999999986543   334445443221     12345799999999999999999886532     


Q ss_pred             -CCCceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEE
Q 011995          249 -GSDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKL  325 (473)
Q Consensus       249 -~~~~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl  325 (473)
                       ....+++||||+++ +|.+++... .....+++..+..++.||+.||+|||+++   |+||||||+||||+.++ .+||
T Consensus       137 ~~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~---IiHrDLKp~NILl~~~~~~vkL  212 (440)
T PTZ00036        137 EKNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKL  212 (440)
T ss_pred             CCceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCcCHHHEEEcCCCCceee
Confidence             11246799999975 777666421 23457899999999999999999999999   99999999999999664 7999


Q ss_pred             eccCCCcccCCC-CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--cccc
Q 011995          326 SGYGCAGHIPET-DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--RPFL  401 (473)
Q Consensus       326 ~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--~~~~  401 (473)
                      +|||+++.+... ......+|+.|+|||++.+. .++.++|||||||++|||++|.+||.+....+....+...  .+..
T Consensus       213 ~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~  292 (440)
T PTZ00036        213 CDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTE  292 (440)
T ss_pred             eccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCH
Confidence            999999876433 23345678999999998764 5899999999999999999999999876654433222111  0000


Q ss_pred             cc---------ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 AD---------DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~---------~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..         ...+..+....+...++...+.++.+|+.+||++||.+|||+.|+++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        293 DQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             HHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            00         000000111111222344456789999999999999999999999854

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=4e-39  Score=311.12  Aligned_cols=251  Identities=22%  Similarity=0.390  Sum_probs=194.7

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|.+.++..   .+.++++...  ........+.+|++++.++ +||||+++++++...  +..++||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~--~~~~lv~   75 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGL---RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR--GYLYLAI   75 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCC---eeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecC--CCceEEE
Confidence            368999999999999765432   2223333333  2334556789999999999 899999999998765  6789999


Q ss_pred             EeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          258 ERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      ||+++|+|.+++....             ....+++..+..++.|++.||+|||+.+   ++|+||||+|||++.++.+|
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nili~~~~~~k  152 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAK  152 (270)
T ss_pred             EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccccceEEEcCCCeEE
Confidence            9999999999986432             1235889999999999999999999998   99999999999999999999


Q ss_pred             EeccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccc
Q 011995          325 LSGYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       325 l~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      |+|||++....... ......+..|+|||++....++.++|||||||++|||++ |..||...........+..      
T Consensus       153 l~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~------  226 (270)
T cd05047         153 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ------  226 (270)
T ss_pred             ECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhC------
Confidence            99999985332111 111223567999999988889999999999999999997 9999976543332221110      


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                       .          .....+...+.++.+++.+||..||.+|||+.++++.|+++.
T Consensus       227 -~----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         227 -G----------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             -C----------CCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence             0          000112334567899999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.5e-39  Score=315.44  Aligned_cols=259  Identities=23%  Similarity=0.352  Sum_probs=203.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||.||+|.....  ......+++++............+.+|+.+++.++||||+++++++..+  +
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~--~   81 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVG--K   81 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC--C
Confidence            46788899999999999999986431  1233455555544333344567799999999999999999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCC-------------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS-------------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST  312 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~-------------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp  312 (473)
                      ..++||||+++|+|.+++....                   ....+++..++.++.|++.||+|||+.+   ++||||||
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~---i~H~dl~p  158 (288)
T cd05050          82 PMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK---FVHRDLAT  158 (288)
T ss_pred             ccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---eecccccH
Confidence            8899999999999999996421                   1235788999999999999999999999   99999999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCCh
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHP  387 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~  387 (473)
                      +|||++.++.++|+|||++........    .....+..|+|||.+.+..++.++|||||||++|||++ |..||.+...
T Consensus       159 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~  238 (288)
T cd05050         159 RNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH  238 (288)
T ss_pred             hheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999999876533321    12233567999999998899999999999999999997 8888876554


Q ss_pred             HHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .+....+....                . ...+...+.++.+|+.+||+.||.+|||+.||++.|++
T Consensus       239 ~~~~~~~~~~~----------------~-~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         239 EEVIYYVRDGN----------------V-LSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             HHHHHHHhcCC----------------C-CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            33222111100                0 01123445789999999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-41  Score=304.99  Aligned_cols=255  Identities=19%  Similarity=0.329  Sum_probs=204.1

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCccccee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLG  243 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g  243 (473)
                      ....||+..       ..||.|+.|.||+++++.   +++.++||..+.....+..++++..++++...+ .|+||+++|
T Consensus        89 ~dindl~~l-------~dlGsGtcG~V~k~~~rs---~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~G  158 (391)
T KOG0983|consen   89 ADINDLENL-------GDLGSGTCGQVWKMRFRS---TGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFG  158 (391)
T ss_pred             cChHHhhhH-------HhhcCCCccceEEEEEcc---cceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeee
Confidence            444555544       889999999999999654   456777888877777778889999999988875 999999999


Q ss_pred             eeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcE
Q 011995          244 FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       244 ~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      ||..+  ..+++.||.|. ..++.++..  -..++++..+-++...++.||.||.+++  .|||||+||+|||+|+.|++
T Consensus       159 yFi~n--~dV~IcMelMs-~C~ekLlkr--ik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~Gni  231 (391)
T KOG0983|consen  159 YFITN--TDVFICMELMS-TCAEKLLKR--IKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNI  231 (391)
T ss_pred             EEeeC--chHHHHHHHHH-HHHHHHHHH--hcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCE
Confidence            99987  67889999983 356666643  2346999999999999999999999887  69999999999999999999


Q ss_pred             EEeccCCCcccCCCC-ccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhhcc
Q 011995          324 KLSGYGCAGHIPETD-ISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSR  398 (473)
Q Consensus       324 kl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~~~  398 (473)
                      |+||||++..+.... .+...|.+.|||||.+.-   ..|+.++||||||+.++||.||+.||.+.+...+ ...+....
T Consensus       232 KlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~e  311 (391)
T KOG0983|consen  232 KLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEE  311 (391)
T ss_pred             EeecccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcC
Confidence            999999998775543 345678899999999843   4589999999999999999999999988544322 22221111


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                   .|.+.+  ....+..+.+|+..||.+|+.+||...++|+.
T Consensus       312 -------------PP~L~~--~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  312 -------------PPLLPG--HMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             -------------CCCCCc--ccCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence                         122222  22377899999999999999999999999864

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=7.7e-40  Score=323.77  Aligned_cols=240  Identities=20%  Similarity=0.298  Sum_probs=190.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   ++.+++|+.....  .......+..|..++... +||||+++++++.+.  +.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~--~~~~lv~   75 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGK---GEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTK--EHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeC--CEEEEEE
Confidence            4699999999999986543   3455565554321  123445667788888764 899999999998766  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC--
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP--  335 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~--  335 (473)
                      ||+.+|+|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...  
T Consensus        76 E~~~~g~L~~~i~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  149 (316)
T cd05620          76 EFLNGGDLMFHIQD---KGRFDLYRATFYAAEIVCGLQFLHSKG---IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFG  149 (316)
T ss_pred             CCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEeCccCCCeecccC
Confidence            99999999998853   346899999999999999999999999   9999999999999999999999999987432  


Q ss_pred             CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          336 ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       336 ~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                      ........+++.|+|||++.+..++.++|||||||++|||++|+.||...........+....              +  
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~--------------~--  213 (316)
T cd05620         150 DNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDT--------------P--  213 (316)
T ss_pred             CCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--------------C--
Confidence            222344578999999999999999999999999999999999999998765543332221110              1  


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHH-HHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMR-SIF  449 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-eil  449 (473)
                        .++...+.++.+++.+||+.||.+||++. +++
T Consensus       214 --~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         214 --HYPRWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             --CCCCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence              12334567889999999999999999985 555

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=4.8e-39  Score=308.71  Aligned_cols=250  Identities=22%  Similarity=0.370  Sum_probs=199.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|.....||+|+||.||+|.+.+..    .+++  +...........+.+|+.+++.++|+|++++++++..   +..+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~----~~~l--K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~   76 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTT----KVAI--KTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSE---EPIY   76 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCc----eEEE--EEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEcC---CCcE
Confidence            45888899999999999999865542    2233  3333333445678899999999999999999988743   5689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+|+|.+++... ....+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        77 ~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dl~~~Nill~~~~~~~l~dfg~~~~~  152 (260)
T cd05069          77 IVTEFMGKGSLLDFLKEG-DGKYLKLPQLVDMAAQIADGMAYIERMN---YIHRDLRAANILVGDNLVCKIADFGLARLI  152 (260)
T ss_pred             EEEEcCCCCCHHHHHhhC-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCeEEECCCccceEc
Confidence            999999999999999653 2345899999999999999999999999   999999999999999999999999999766


Q ss_pred             CCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ......   ...++..|++||.+.+..++.++|||||||++|||++ |..||.+.........+...             
T Consensus       153 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~-------------  219 (260)
T cd05069         153 EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERG-------------  219 (260)
T ss_pred             cCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-------------
Confidence            433221   2234578999999988889999999999999999999 99999876544332221110             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                          ....++...+..+.+++.+||..||.+||++++|++.|++
T Consensus       220 ----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         220 ----YRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ----CCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                0001233456789999999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=4.4e-39  Score=318.00  Aligned_cols=263  Identities=21%  Similarity=0.358  Sum_probs=205.4

Q ss_pred             cccccCcceeecCCceEEEEEECCC----CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDD----ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ++|.+.+.||+|+||.||++...+.    ......+++|.............+.+|+.++..+ +||||+++++++... 
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-   90 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE-   90 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC-
Confidence            5677889999999999999975321    1122334444444333444566789999999999 699999999998765 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                       +..++||||+++|+|.+++....             ....+++..+..++.|++.||.|||+++   |+||||||+|||
T Consensus        91 -~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nil  166 (314)
T cd05099          91 -GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR---CIHRDLAARNVL  166 (314)
T ss_pred             -CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeeccccceeEE
Confidence             67999999999999999996532             1245899999999999999999999999   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ++.++.+||+|||+++.......    ....++..|+|||.+.+..++.++|||||||++|||++ |..||.........
T Consensus       167 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~  246 (314)
T cd05099         167 VTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELF  246 (314)
T ss_pred             EcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            99999999999999976643221    11223467999999988889999999999999999999 89999766544333


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ..+..       ...          ...+..++.++.+++.+||..||++|||+.++++.|+++....
T Consensus       247 ~~~~~-------~~~----------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~  297 (314)
T cd05099         247 KLLRE-------GHR----------MDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAV  297 (314)
T ss_pred             HHHHc-------CCC----------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHh
Confidence            22210       000          0113345578899999999999999999999999999886543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.8e-39  Score=315.89  Aligned_cols=273  Identities=19%  Similarity=0.284  Sum_probs=202.7

Q ss_pred             ccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .|+..+.||+|+||.||.+.+.. +....+.+++|.............+.+|+++++.++|+||+++++++...+....+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            46778999999999999998642 23344555566554333444557799999999999999999999998876557789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++..+..++.|++.||+|||+++   ++||||||+|||++.++.++|+|||++...
T Consensus        85 lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~i~~~i~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRN--KNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAI  159 (284)
T ss_pred             EEEEccCCCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccchheEEEcCCCCEEECCCcccccc
Confidence            999999999999998543  336899999999999999999999999   999999999999999999999999999866


Q ss_pred             CCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          335 PETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       335 ~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....     ....++..|+|||++.+..++.++|||||||++|||++++.|+...........-.+.... ... ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~  237 (284)
T cd05079         160 ETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQM-TVT-RLVR  237 (284)
T ss_pred             ccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccc-cHH-HHHH
Confidence            43221     1234556799999998888999999999999999999987765332110000000000000 000 0000


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ..........+..++..+.+|+.+||+.||.+||++.++++.|+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         238 VLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            0000001111334568899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-40  Score=321.14  Aligned_cols=248  Identities=18%  Similarity=0.285  Sum_probs=212.1

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      =|...+.||+|.|++|-+|+   +..++.+++||++.... ..-....+.+|+..|+.++|||||+||++..+.  ..+|
T Consensus        19 LYDLekTlG~GHFAVVKLAr---HVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQ--TKly   93 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLAR---HVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQ--TKLY   93 (864)
T ss_pred             eehhhhhhcCCceehhhhhh---hhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhccc--ceEE
Confidence            36666889999999999997   77888888888876543 344557789999999999999999999987655  8899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla~~  333 (473)
                      ||+|+-++|+|+|+|.+.  ...+.+....+++.||+.||.|+|+.+   +|||||||+||.+- .-|.|||.|||++..
T Consensus        94 LiLELGD~GDl~DyImKH--e~Gl~E~La~kYF~QI~~AI~YCHqLH---VVHRDLKPENVVFFEKlGlVKLTDFGFSNk  168 (864)
T KOG4717|consen   94 LILELGDGGDLFDYIMKH--EEGLNEDLAKKYFAQIVHAISYCHQLH---VVHRDLKPENVVFFEKLGLVKLTDFGFSNK  168 (864)
T ss_pred             EEEEecCCchHHHHHHhh--hccccHHHHHHHHHHHHHHHHHHhhhh---hhcccCCcceeEEeeecCceEeeecccccc
Confidence            999999999999999654  445899999999999999999999998   99999999998775 569999999999976


Q ss_pred             cC-CCCccCcccccccCChhhhhcCCCC-CcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IP-ETDISNSSVAAANLSVETLERGLLT-PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~-~~~~~~~~~t~~y~aPE~~~~~~~s-~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      +. .....+.+|+..|-|||++.+..|+ +++||||||||||.|++|++||...++.+....|                +
T Consensus       169 f~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmI----------------m  232 (864)
T KOG4717|consen  169 FQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMI----------------M  232 (864)
T ss_pred             CCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhh----------------h
Confidence            64 4466788999999999999999986 7899999999999999999999987766644333                2


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      |-..  ..|..++.++++||..||+.||.+|.+.+||...
T Consensus       233 DCKY--tvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  233 DCKY--TVPSHVSKECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             cccc--cCchhhhHHHHHHHHHHHhcCchhhccHHHHhcc
Confidence            2221  2377899999999999999999999999999753

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-41  Score=343.49  Aligned_cols=277  Identities=18%  Similarity=0.344  Sum_probs=224.7

Q ss_pred             CcCCCHHHHHHHhcc---------cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHH
Q 011995          162 LRNFPLDEVAAACHN---------FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTL  230 (473)
Q Consensus       162 ~~~~~~~el~~~~~~---------f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l  230 (473)
                      ...++|++--++...         ..+.++||.|-||.||+|+++-...  +.+.|++|.++  ..+....+|+.|..||
T Consensus       607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgk--re~~VAIKTLK~GytekqrrdFL~EAsIM  684 (996)
T KOG0196|consen  607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGK--REITVAIKTLKAGYTEKQRRDFLSEASIM  684 (996)
T ss_pred             cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCC--cceeEEEeeeccCccHHHHhhhhhhhhhc
Confidence            344666554444333         3466899999999999999866543  34445555555  3566678899999999


Q ss_pred             HhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCC
Q 011995          231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF  310 (473)
Q Consensus       231 ~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDl  310 (473)
                      .+++||||++|.|+....  ..++||.|||++|+|+.+|+.+  .+.|.+.+..-++++|+.|+.||-+.+   +|||||
T Consensus       685 GQFdHPNIIrLEGVVTks--~PvMIiTEyMENGsLDsFLR~~--DGqftviQLVgMLrGIAsGMkYLsdm~---YVHRDL  757 (996)
T KOG0196|consen  685 GQFDHPNIIRLEGVVTKS--KPVMIITEYMENGSLDSFLRQN--DGQFTVIQLVGMLRGIASGMKYLSDMN---YVHRDL  757 (996)
T ss_pred             ccCCCCcEEEEEEEEecC--ceeEEEhhhhhCCcHHHHHhhc--CCceEeehHHHHHHHHHHHhHHHhhcC---chhhhh
Confidence            999999999999998765  7899999999999999999764  456999999999999999999999999   999999


Q ss_pred             CCCceeeCCCCcEEEeccCCCcccCCCC---ccCccc--ccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCC
Q 011995          311 STANIQIDKDFSAKLSGYGCAGHIPETD---ISNSSV--AAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS  384 (473)
Q Consensus       311 kp~NILl~~~~~vkl~DFGla~~~~~~~---~~~~~~--t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~  384 (473)
                      ...|||++.+..+||+|||+++.+.++.   +++..|  ...|.|||.+...+++.+||||||||++||.++ |+.||.+
T Consensus       758 AARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWd  837 (996)
T KOG0196|consen  758 AARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD  837 (996)
T ss_pred             hhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccc
Confidence            9999999999999999999999775443   222222  378999999999999999999999999999876 9999998


Q ss_pred             CChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCcc
Q 011995          385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSST  464 (473)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~~  464 (473)
                      ....+-...++       ++.++          .-|.+++..+.+|+..||++|-.+||.+.+|+..|+++-..-.+=+.
T Consensus       838 mSNQdVIkaIe-------~gyRL----------PpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~SLk~  900 (996)
T KOG0196|consen  838 MSNQDVIKAIE-------QGYRL----------PPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNSLKT  900 (996)
T ss_pred             cchHHHHHHHH-------hccCC----------CCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchhhcc
Confidence            77665444332       22222          12678889999999999999999999999999999998765555333

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=2.7e-39  Score=312.11  Aligned_cols=259  Identities=17%  Similarity=0.330  Sum_probs=204.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||+|.+.+.......++++...........+.+.+|+.+++.++|+||+++++++.+   +..+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~---~~~~   82 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE---NPVW   82 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC---CCcE
Confidence            4577789999999999999987544222233444444433334456789999999999999999999998864   5678


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..+..++.+++.||.|||+.+   ++|+||||+|||++.++.+||+|||++...
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~  157 (270)
T cd05056          83 IVMELAPLGELRSYLQVN--KYSLDLASLILYSYQLSTALAYLESKR---FVHRDIAARNVLVSSPDCVKLGDFGLSRYL  157 (270)
T ss_pred             EEEEcCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccChheEEEecCCCeEEccCceeeec
Confidence            999999999999999543  335899999999999999999999998   999999999999999999999999998766


Q ss_pred             CCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....   .....+..|+|||.+....++.++|||||||++|||++ |..||......+....+....       ..   
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~-------~~---  227 (270)
T cd05056         158 EDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGE-------RL---  227 (270)
T ss_pred             ccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC-------cC---
Confidence            43321   11223467999999988889999999999999999986 999997765443322221110       00   


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                             ..+..++..+.+++.+||..+|.+|||+.++++.|+.+...
T Consensus       228 -------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         228 -------PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             -------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                   11334567899999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=8.6e-40  Score=331.94  Aligned_cols=248  Identities=18%  Similarity=0.199  Sum_probs=194.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .|+..+.||+|+||.||+|....   ..+.+++|+.....  .......+.+|+.+++.++|+|||++++++.+.  +.+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~---~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~--~~~   76 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVD---TKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDK--DNL   76 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECC---CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeC--CEE
Confidence            57888999999999999998544   34455566554321  223456788999999999999999999998866  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        77 ~lv~E~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~al~~lH~~~---ivHrDlKp~NILl~~~g~~kL~DFGla~~  150 (382)
T cd05625          77 YFVMDYIPGGDMMSLLIRM---GIFPEDLARFYIAELTCAVESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (382)
T ss_pred             EEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence            9999999999999998543   45889999999999999999999999   99999999999999999999999999753


Q ss_pred             cCCC-------------------------------------------------CccCcccccccCChhhhhcCCCCCcCC
Q 011995          334 IPET-------------------------------------------------DISNSSVAAANLSVETLERGLLTPKSN  364 (473)
Q Consensus       334 ~~~~-------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~s~~sD  364 (473)
                      +...                                                 ......||+.|+|||++.+..++.++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~D  230 (382)
T cd05625         151 FRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCD  230 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeee
Confidence            2100                                                 001236789999999999889999999


Q ss_pred             chHHHHHHHHHHcCCCCCCCCChHHHHhH-hhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC
Q 011995          365 VWSFGIVLLELLTGRKNLDSRHPKEERNL-VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP  443 (473)
Q Consensus       365 vwSlGvvl~elltG~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP  443 (473)
                      ||||||++|||++|++||......+.... +.|...               +........+.++.+++.+|+ .+|.+|+
T Consensus       231 iwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~---------------~~~p~~~~~s~~~~~li~~l~-~~p~~R~  294 (382)
T cd05625         231 WWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTS---------------LHIPPQAKLSPEASDLIIKLC-RGPEDRL  294 (382)
T ss_pred             EEechHHHHHHHhCCCCCCCCCHHHHHHHHHccCCC---------------cCCCCcccCCHHHHHHHHHHc-cCHhHcC
Confidence            99999999999999999987665443221 222110               000012245677888888876 5999999


Q ss_pred             C---HHHHHH
Q 011995          444 T---MRSIFE  450 (473)
Q Consensus       444 t---~~eil~  450 (473)
                      +   +.++++
T Consensus       295 ~~~~~~ei~~  304 (382)
T cd05625         295 GKNGADEIKA  304 (382)
T ss_pred             CCCCHHHHhc
Confidence            7   888775

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.1e-39  Score=323.06  Aligned_cols=242  Identities=20%  Similarity=0.278  Sum_probs=193.4

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   ...+++|+.+..  ........+.+|++++..+ +||||+++++++...  +.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~--~~~~lv~   75 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGT---DELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTK--DRLFFVM   75 (318)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC--CEEEEEE
Confidence            4699999999999986543   344556655432  1233456678899999888 799999999998765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|.+++..   ...+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++..... 
T Consensus        76 e~~~~~~L~~~~~~---~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  149 (318)
T cd05570          76 EYVNGGDLMFHIQR---SGRFDEPRARFYAAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILG  149 (318)
T ss_pred             cCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEccCCCHHHeEECCCCcEEecccCCCeecCcC
Confidence            99999999988853   346999999999999999999999999   99999999999999999999999999865322 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                       .......++..|+|||++.+..++.++|||||||++|||++|..||...........+...                  
T Consensus       150 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~------------------  211 (318)
T cd05570         150 GVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILED------------------  211 (318)
T ss_pred             CCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcC------------------
Confidence             2223446889999999999999999999999999999999999999876543322211100                  


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTM-----RSIFEE  451 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~~  451 (473)
                      ...++...+..+.+|+.+||+.||.+||++     .++++.
T Consensus       212 ~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         212 EVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             CCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcC
Confidence            001233456789999999999999999999     777653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=5.4e-39  Score=307.56  Aligned_cols=250  Identities=20%  Similarity=0.336  Sum_probs=198.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||++...+..     ++++...   .....+.+.+|+.++++++|+|++++++++...+ +..+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~-----~~~k~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-~~~~   76 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYRGNK-----VAVKCIK---NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-GGLY   76 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEcCCc-----EEEEEeC---CCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCC-CceE
Confidence            46888899999999999999865432     2333332   2233567899999999999999999999875442 6789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||++...
T Consensus        77 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~  152 (256)
T cd05082          77 IVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEA  152 (256)
T ss_pred             EEEECCCCCcHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccccchheEEEcCCCcEEecCCccceec
Confidence            999999999999998653 2345899999999999999999999999   999999999999999999999999998755


Q ss_pred             CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      .... .....+..|+|||++.+..++.++|||||||++|||++ |..||...........+..       +         
T Consensus       153 ~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~-------~---------  215 (256)
T cd05082         153 SSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-------G---------  215 (256)
T ss_pred             cccC-CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhc-------C---------
Confidence            3322 23344568999999988889999999999999999997 9999976544332221110       0         


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                       .....+..++..+.+++.+||+.||++|||+.++++.|+++
T Consensus       216 -~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         216 -YKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             -CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence             00112334567899999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=8.9e-40  Score=330.23  Aligned_cols=253  Identities=14%  Similarity=0.145  Sum_probs=198.7

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|+..+.||+|+||.||++....   ..+.+++|+....  ........+.+|+.+++.++||||+++++++.+.  
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~--  115 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKS---SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDD--  115 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECC---CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecC--
Confidence            35689999999999999999998644   3345556655421  1223345578899999999999999999988765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+|+||||+++|+|.+++..    ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+
T Consensus       116 ~~~~lv~Ey~~gg~L~~~l~~----~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~kL~DfG~  188 (370)
T cd05596         116 KYLYMVMEYMPGGDLVNLMSN----YDIPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGT  188 (370)
T ss_pred             CEEEEEEcCCCCCcHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEcCCCCEEEEeccc
Confidence            789999999999999999843    24788899999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC---ccCcccccccCChhhhhcC----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          331 AGHIPETD---ISNSSVAAANLSVETLERG----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       331 a~~~~~~~---~~~~~~t~~y~aPE~~~~~----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      +.......   .....+|+.|+|||++.+.    .++.++|||||||++|||++|..||...........+.....    
T Consensus       189 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~----  264 (370)
T cd05596         189 CMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKN----  264 (370)
T ss_pred             eeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCC----
Confidence            87654332   2345689999999998653    378999999999999999999999987654433222211000    


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~  451 (473)
                                .+........+.++.+|+.+||..+|.+  |+++.++++.
T Consensus       265 ----------~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         265 ----------SLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             ----------cCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence                      0000001235688999999999999988  9999999765

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=4.4e-40  Score=333.34  Aligned_cols=250  Identities=19%  Similarity=0.191  Sum_probs=196.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||.||+|....   ..+.+++|+.....  .......+.+|+++|..++|+||+++++++.++  +.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~--~~   75 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVD---TNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDK--DN   75 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECC---CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcC--CE
Confidence            368889999999999999998544   34556666554321  122346688999999999999999999998766  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~E~~~~g~L~~~i~~---~~~~~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598          76 LYFVMDYIPGGDMMSLLIR---LGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             EEEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            9999999999999999954   345888999999999999999999999   9999999999999999999999999975


Q ss_pred             ccCCC---------------------------------------------CccCcccccccCChhhhhcCCCCCcCCchH
Q 011995          333 HIPET---------------------------------------------DISNSSVAAANLSVETLERGLLTPKSNVWS  367 (473)
Q Consensus       333 ~~~~~---------------------------------------------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwS  367 (473)
                      .+...                                             ......||+.|||||++.+..++.++||||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  229 (376)
T cd05598         150 GFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS  229 (376)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeee
Confidence            32100                                             001246889999999999989999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCChHHHHhHh-hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC---
Q 011995          368 FGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP---  443 (473)
Q Consensus       368 lGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP---  443 (473)
                      |||++|||++|+.||......+....+ .|...               +.......++.++.+++.+|+ .+|.+|+   
T Consensus       230 lGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~---------------~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~  293 (376)
T cd05598         230 VGVILYEMLVGQPPFLADTPAETQLKVINWETT---------------LHIPSQAKLSREASDLILRLC-CGAEDRLGKN  293 (376)
T ss_pred             ccceeeehhhCCCCCCCCCHHHHHHHHhccCcc---------------ccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCC
Confidence            999999999999999876654432222 22110               000011235677888999876 5999999   


Q ss_pred             CHHHHHHH
Q 011995          444 TMRSIFEE  451 (473)
Q Consensus       444 t~~eil~~  451 (473)
                      ++.++++.
T Consensus       294 t~~ell~h  301 (376)
T cd05598         294 GADEIKAH  301 (376)
T ss_pred             CHHHHhCC
Confidence            89999865

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=7.1e-40  Score=330.78  Aligned_cols=252  Identities=15%  Similarity=0.165  Sum_probs=196.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||.||++....+   .+.+++|+....  ........+.+|+.+++.++||||+++++++.++  +
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~--~  116 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKSS---QKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDD--K  116 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC--C
Confidence            57899999999999999999986543   345555554321  1223345678999999999999999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+||||+++|+|.+++..    ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~----~~~~~~~~~~~~~qil~aL~~LH~~~---IvHrDLKp~NILl~~~~~~kL~DFG~a  189 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSN----YDVPEKWAKFYTAEVVLALDAIHSMG---LIHRDVKPDNMLLDKHGHLKLADFGTC  189 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEEecccc
Confidence            89999999999999999843    24888999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC---ccCcccccccCChhhhhcC----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          332 GHIPETD---ISNSSVAAANLSVETLERG----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       332 ~~~~~~~---~~~~~~t~~y~aPE~~~~~----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      .......   .....+|+.|+|||++.+.    .++.++|||||||++|||++|..||...........+...      .
T Consensus       190 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~------~  263 (370)
T cd05621         190 MKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDH------K  263 (370)
T ss_pred             eecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhC------C
Confidence            8664322   2345689999999999754    3788999999999999999999999876544332222100      0


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~  451 (473)
                      .        .+........+..+.+++.+||..++.+  |+++.++++.
T Consensus       264 ~--------~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         264 N--------SLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             c--------ccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            0        0000011245678899999999855543  8899999886

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.5e-39  Score=315.64  Aligned_cols=252  Identities=18%  Similarity=0.263  Sum_probs=197.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||+|....   ....+++++............+.+|++++.+++||||+++++++..+  +..+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~   75 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLL---TRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVE--NRIS   75 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcC---CCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEEC--CEEE
Confidence            357778999999999999998543   34456666655444445567799999999999999999999999876  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|..+.       .+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.++|+|||++...
T Consensus        76 lv~e~~~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nill~~~~~~~l~dfg~~~~~  145 (279)
T cd06619          76 ICTEFMDGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLWSLK---ILHRDVKPSNMLVNTRGQVKLCDFGVSTQL  145 (279)
T ss_pred             EEEecCCCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCCHHHEEECCCCCEEEeeCCcceec
Confidence            999999999996542       3678899999999999999999999   999999999999999999999999999876


Q ss_pred             CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh-Hhhhccccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN-LVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      .........++..|+|||++.+..++.++|||||||++|+|++|..||.......... ...+.          ..+.+.
T Consensus       146 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~----------~~~~~~  215 (279)
T cd06619         146 VNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLL----------QCIVDE  215 (279)
T ss_pred             ccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHH----------HHHhcc
Confidence            5444455678899999999998889999999999999999999999996533211100 00000          000000


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..........+.++.+++.+||+.||.+||+++++++.
T Consensus       216 ~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         216 DPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             CCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            00000012345678999999999999999999999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-40  Score=296.30  Aligned_cols=264  Identities=19%  Similarity=0.270  Sum_probs=209.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC---CC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD---GS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~---~~  250 (473)
                      -++|.+.+.||+|||+-||.+.   +..+.+.+|+|.+.... .+..+..++|++..++++||||++++++...+   +.
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~---~~s~~~~YAlKkI~c~~-~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~   95 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVK---GLSTGHLYALKKILCHS-QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGK   95 (302)
T ss_pred             CceEEEeeeecCCCceeeeeec---ccCcccchhhheeeccc-hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCc
Confidence            3579999999999999999997   66677777777665543 56778899999999999999999999887543   44


Q ss_pred             CceEEEEEeccCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      .+.||+++|...|+|.+.+..... +..+++.+++.|+.+|++||++||+..+ ++.||||||.|||+++.+.++|.|||
T Consensus        96 ~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~-~yAH~DiKP~NILls~~~~~vl~D~G  174 (302)
T KOG2345|consen   96 HEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEP-PYAHRDIKPANILLSDSGLPVLMDLG  174 (302)
T ss_pred             eeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCC-cccccCCCcceeEecCCCceEEEecc
Confidence            679999999999999999976543 4478999999999999999999999985 59999999999999999999999999


Q ss_pred             CCcccCCC-----------CccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          330 CAGHIPET-----------DISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       330 la~~~~~~-----------~~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      .++...-.           +......|..|.|||.+.-   ...+.++|||||||+||+|+.|..||+.... . ..-+ 
T Consensus       175 S~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~-~-GgSl-  251 (302)
T KOG2345|consen  175 SATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ-Q-GGSL-  251 (302)
T ss_pred             CccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh-c-CCeE-
Confidence            98765321           1123345889999999853   3478999999999999999999999975332 1 1100 


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                                 .-.+.+..+.-.-....++.+.++|..||+.||.+||++.+++..++.+-
T Consensus       252 -----------aLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  252 -----------ALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             -----------EEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence                       01111112111112236789999999999999999999999999998763

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=3.3e-39  Score=310.72  Aligned_cols=260  Identities=20%  Similarity=0.260  Sum_probs=203.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||+|....+   .+.++++......  .......+.+|+.+++.++|+||+++++++..+  +.
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~---~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~   76 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLD---GVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED--NE   76 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCC---CceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeC--Ce
Confidence            4688889999999999999985433   3344454433221  223456788999999999999999999998876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .++||||+++++|.+++.... ....+++..+..++.||+.||.|||+.+   ++|+||||+||+++.++.++|+|||++
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~  153 (267)
T cd08229          77 LNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             EEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEECcchhh
Confidence            999999999999999885422 2356899999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .......  .....++..|+|||++.+..++.++||||||+++|||++|..||........ .....          +..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-~~~~~----------~~~  222 (267)
T cd08229         154 RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-SLCKK----------IEQ  222 (267)
T ss_pred             hccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHH-HHhhh----------hhc
Confidence            7664322  2234677899999999888899999999999999999999999975432211 11110          000


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      ...+..   .....+..+.+++.+||..||.+|||+.+|++.++++.
T Consensus       223 ~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         223 CDYPPL---PSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             CCCCCC---CcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            001111   12346678999999999999999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=5.5e-39  Score=307.39  Aligned_cols=250  Identities=20%  Similarity=0.321  Sum_probs=198.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|++|.||+|.+.........++++...........+.+.+|+.++++++|+||+++++++..   ...++||||+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~~~v~e~~   77 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT---HPLMMVTELA   77 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC---CeEEEEEEec
Confidence            4689999999999997654333334455554443333556789999999999999999999998865   6789999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC--
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD--  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~--  338 (473)
                      ++|+|.+++..... ..+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.+||+|||++..+....  
T Consensus        78 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  153 (257)
T cd05040          78 PLGSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLESKR---FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH  153 (257)
T ss_pred             CCCcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHhCC---ccccccCcccEEEecCCEEEeccccccccccccccc
Confidence            99999999965432 56899999999999999999999999   9999999999999999999999999998764421  


Q ss_pred             ---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          339 ---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       339 ---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                         .....++..|++||.+.+..++.++|||||||++|||++ |..||......+....+..      ....        
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~------~~~~--------  219 (257)
T cd05040         154 YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDK------EGER--------  219 (257)
T ss_pred             eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHh------cCCc--------
Confidence               112345678999999998889999999999999999998 9999976554432222210      0000        


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                        ...+...+..+.+++.+||+.+|++||++.++++.|.
T Consensus       220 --~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         220 --LERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             --CCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence              0112334578999999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=5.2e-39  Score=308.38  Aligned_cols=252  Identities=22%  Similarity=0.373  Sum_probs=200.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..++||+|+||.||+|...++    +.+++|.  +.........+.+|+.++++++|+||+++++++..   +..
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~----~~~a~K~--~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   75 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGH----TKVAIKS--LKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQ---EPI   75 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCC----ceEEEEE--ecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEcc---CCc
Confidence            35788889999999999999986543    3344443  33333445789999999999999999999988643   578


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+.+++|.+++... .+..+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++..
T Consensus        76 ~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          76 YIITEYMENGSLVDFLKTP-EGIKLTINKLIDMAAQIAEGMAFIERKN---YIHRDLRAANILVSETLCCKIADFGLARL  151 (260)
T ss_pred             EEEEEcCCCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHHhEEEcCCCCEEEccCcceee
Confidence            9999999999999998653 3457899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .......   ...++..|+|||++.+..++.++||||||+++|||++ |..||.............       ..     
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~-------~~-----  219 (260)
T cd05067         152 IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLE-------RG-----  219 (260)
T ss_pred             cCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHH-------cC-----
Confidence            6432221   2234578999999988889999999999999999999 999998665433222111       00     


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                           .....+...+.++.+++.+||..+|++||++++++..|+.+
T Consensus       220 -----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  260 (260)
T cd05067         220 -----YRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLEDF  260 (260)
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhcC
Confidence                 00011233457899999999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=7.3e-39  Score=306.28  Aligned_cols=251  Identities=21%  Similarity=0.426  Sum_probs=202.8

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|+||.||+|...........+++++............+.+|++++..++|+||+++++++...  ...++||||+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEE--EPLYLVLEYM   78 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCC--CceEEEEEec
Confidence            46999999999999976542334455555554433333467899999999999999999999998774  7899999999


Q ss_pred             cCCChhhhhhcCCC------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          261 FHGSLDRLIYGRSD------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       261 ~~gsL~~~l~~~~~------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ++++|.+++.....      ...+++..+..++.|++.||+|||+++   ++|+||+|+||+++.++.+||+|||.+...
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~  155 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK---FVHRDLAARNCLVGEDLVVKISDFGLSRDV  155 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC---cccCccCcceEEECCCCcEEEccccccccc
Confidence            99999999965311      367999999999999999999999999   999999999999999999999999999877


Q ss_pred             CCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          335 PETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       335 ~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....    .....++..|+|||.+....++.++|||||||++|||++ |..||...........+..       .     
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~-------~-----  223 (262)
T cd00192         156 YDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRK-------G-----  223 (262)
T ss_pred             ccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-------C-----
Confidence            5432    233456789999999988889999999999999999999 6999987644332222110       0     


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                           .....+..++.++.+++.+||..||.+|||+.++++.|+
T Consensus       224 -----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         224 -----YRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             -----CCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                 011224455788999999999999999999999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-42  Score=313.33  Aligned_cols=247  Identities=20%  Similarity=0.314  Sum_probs=207.0

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |.+..+||+|+||.||+|.++.   .+..++++.+..   ....++++.||.+|.++..+++|++||.+...  ..+|+|
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~E---sG~v~AIK~VPV---~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~--sDLWIV  106 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRE---SGHVLAIKKVPV---DTDLQEIIKEISIMQQCKSKYVVKYYGSYFKH--SDLWIV  106 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhc---cCcEEEEEecCc---cchHHHHHHHHHHHHHcCCchhhhhhhhhccC--CceEee
Confidence            4445889999999999998544   444444444433   35678999999999999999999999988765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      ||||..|++.|+++.+  ..+|.+.++..++...+.||+|||...   -||||||..||||+-+|.+||+|||+|..+..
T Consensus       107 MEYCGAGSiSDI~R~R--~K~L~E~EIs~iL~~TLKGL~YLH~~~---KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD  181 (502)
T KOG0574|consen  107 MEYCGAGSISDIMRAR--RKPLSEQEISAVLRDTLKGLQYLHDLK---KIHRDIKAGNILLNTDGIAKLADFGVAGQLTD  181 (502)
T ss_pred             hhhcCCCcHHHHHHHh--cCCccHHHHHHHHHHHHhHHHHHHHHH---HHHhhcccccEEEcccchhhhhhccccchhhh
Confidence            9999999999999654  568999999999999999999999998   89999999999999999999999999988765


Q ss_pred             CC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          337 TD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       337 ~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      ..  .++..||+-|||||+++.-.|+.++||||||+...||..|++||.+.++......+.               .+|.
T Consensus       182 TMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIP---------------T~PP  246 (502)
T KOG0574|consen  182 TMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIP---------------TKPP  246 (502)
T ss_pred             hHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEecc---------------CCCC
Confidence            53  356689999999999999999999999999999999999999998876544221111               1122


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..-.-|...+.++.+|++.||.+.|++|-|+-++++.
T Consensus       247 PTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  247 PTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             CCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence            2223377889999999999999999999999988764

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.4e-39  Score=340.00  Aligned_cols=260  Identities=16%  Similarity=0.196  Sum_probs=206.2

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      ++....++|.+.+.||+|+||+||+|....   ..+.+++|+..... .......+.+|+.++..++|+||+++++.+..
T Consensus        26 ~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~---~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~  102 (496)
T PTZ00283         26 TAKEQAKKYWISRVLGSGATGTVLCAKRVS---DGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAK  102 (496)
T ss_pred             cccccCCCEEEEEEEecCCCEEEEEEEEcC---CCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceec
Confidence            333445799999999999999999998543   34566677665543 33445678899999999999999999877654


Q ss_pred             CCC------CceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          248 DGS------DQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       248 ~~~------~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ...      ..+++||||+++|+|.+++.... ....+++..+..++.|++.||.|||+.+   |+||||||+|||++.+
T Consensus       103 ~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~---IiHrDLKP~NILl~~~  179 (496)
T PTZ00283        103 KDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH---MIHRDIKSANILLCSN  179 (496)
T ss_pred             ccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEeCC
Confidence            321      13689999999999999986432 2456899999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCC----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          321 FSAKLSGYGCAGHIPET----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      +.+||+|||+++.....    ......+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+..
T Consensus       180 ~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~  259 (496)
T PTZ00283        180 GLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLA  259 (496)
T ss_pred             CCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhc
Confidence            99999999998765422    12345789999999999998999999999999999999999999987654332221110


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .                 ....++..++.++.+++.+||+.||.+||++.++++.
T Consensus       260 ~-----------------~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        260 G-----------------RYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             C-----------------CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            0                 0011244556889999999999999999999999864

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=8.9e-39  Score=308.45  Aligned_cols=254  Identities=21%  Similarity=0.270  Sum_probs=191.8

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|+||.||+|.+.++. ....++++..+..........+.+|+.++++++||||+++++++.+.  ...++||||+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~   77 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGY-TPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEV--TPYLLVMEFC   77 (269)
T ss_pred             CcccccCCceEEEEEEcCCC-CceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC--CCcEEEEECC
Confidence            46899999999999875432 33444455544443344456789999999999999999999998765  7789999999


Q ss_pred             cCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC
Q 011995          261 FHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~  338 (473)
                      ++|+|.+++.....  ...+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.+||+|||++.......
T Consensus        78 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~  154 (269)
T cd05087          78 PLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN---FIHSDLALRNCLLTADLTVKIGDYGLSHNKYKED  154 (269)
T ss_pred             CCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEECCccccccccCcc
Confidence            99999999965322  235678888999999999999999999   9999999999999999999999999987553332


Q ss_pred             c----cCcccccccCChhhhhcC-------CCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          339 I----SNSSVAAANLSVETLERG-------LLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       339 ~----~~~~~t~~y~aPE~~~~~-------~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      .    ....++..|+|||++.+.       .++.++|||||||++|||++ |..||......+...... .    .   .
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~-~----~---~  226 (269)
T cd05087         155 YYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTV-R----E---Q  226 (269)
T ss_pred             eeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHh-h----c---c
Confidence            1    123456789999998642       35789999999999999996 999997655433221110 0    0   0


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .....++.+    ....+..+.+++.+|| .+|++|||+.+|++.|+
T Consensus       227 ~~~~~~~~~----~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         227 QLKLPKPRL----KLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCCCCcc----CCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            011111111    2234467889999999 68999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=323.64  Aligned_cols=252  Identities=18%  Similarity=0.206  Sum_probs=213.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~  250 (473)
                      ...|+..+.||+|.||.||+++...   +++.+++|++....  .......+.+|+.+|+++. |||||.+++.+.+.  
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~---tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~--  108 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKS---TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDP--  108 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecC---CCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcC--
Confidence            4568888999999999999998544   46666777665442  2335578999999999998 99999999999877  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC----CcEEEe
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD----FSAKLS  326 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~----~~vkl~  326 (473)
                      +.+++|||++.||.|.+.+...    .+++..+..++.|++.++.|||+.+   |+||||||+|+|+...    +.+|++
T Consensus       109 ~~~~lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~~g---vvHrDlKpEN~L~~~~~~~~~~ik~~  181 (382)
T KOG0032|consen  109 DSVYLVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHSLG---VVHRDLKPENLLLASKDEGSGRIKLI  181 (382)
T ss_pred             CeEEEEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHhCC---ceeccCCHHHeeeccccCCCCcEEEe
Confidence            7999999999999999999664    3999999999999999999999999   9999999999999533    579999


Q ss_pred             ccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          327 GYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       327 DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      |||++...... .....+||+.|+|||++....|+..+||||+||++|.|++|.+||.+.........+.....      
T Consensus       182 DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~------  255 (382)
T KOG0032|consen  182 DFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDF------  255 (382)
T ss_pred             eCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCC------
Confidence            99999888653 45667999999999999999999999999999999999999999998876655543332211      


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              .+.......++..+.+||..|+..||.+|+|+.++|+.
T Consensus       256 --------~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  256 --------DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             --------CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence                    22223345678999999999999999999999999995

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.6e-40  Score=331.89  Aligned_cols=258  Identities=17%  Similarity=0.219  Sum_probs=191.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|....   +.+.+++|+.       ....+.+|+++|++++|||||++++++...  ...
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~---~~~~vaiK~~-------~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--~~~  158 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNK---TCEHVVIKAG-------QRGGTATEAHILRAINHPSIIQLKGTFTYN--KFT  158 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECC---CCCEEEEech-------hhhhhHHHHHHHHhCCCCCCCCEeEEEEEC--Cee
Confidence            3579999999999999999998543   3344445432       134578999999999999999999998765  788


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++|+|++. ++|..++..   ...+++..++.++.||+.||.|||+++   ||||||||+|||++.++.+||+|||++..
T Consensus       159 ~lv~e~~~-~~L~~~l~~---~~~l~~~~~~~i~~qi~~aL~ylH~~~---IvHrDiKP~NIll~~~~~vkL~DFG~a~~  231 (391)
T PHA03212        159 CLILPRYK-TDLYCYLAA---KRNIAICDILAIERSVLRAIQYLHENR---IIHRDIKAENIFINHPGDVCLGDFGAACF  231 (391)
T ss_pred             EEEEecCC-CCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHhEEEcCCCCEEEEeCCcccc
Confidence            99999984 689888843   346899999999999999999999999   99999999999999999999999999975


Q ss_pred             cCC---CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh-------HHHH-hHhhhccccc-
Q 011995          334 IPE---TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP-------KEER-NLVKWSRPFL-  401 (473)
Q Consensus       334 ~~~---~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~-------~~~~-~~~~~~~~~~-  401 (473)
                      ...   .......+|+.|+|||++.+..++.++|||||||++|||++|..||.....       .... .++....... 
T Consensus       232 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~  311 (391)
T PHA03212        232 PVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPN  311 (391)
T ss_pred             cccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChh
Confidence            422   223345789999999999988999999999999999999999988753221       0111 1111000000 


Q ss_pred             ----cccccccc---------ccccccCCCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          402 ----ADDCRLSL---------IMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       402 ----~~~~~~~~---------~~~~~l~~~~--~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          .....+..         ...+.....+  ....+.++.+|+.+||+.||.+|||+.|+++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        312 EFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             hcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence                00000000         0000000000  1134668899999999999999999999985

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2.7e-39  Score=314.29  Aligned_cols=246  Identities=17%  Similarity=0.237  Sum_probs=192.3

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||+|+||+||++....   ..+.+++|+.....  .....+.+..|+++++.++|+||+++++++...  ...++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~--~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRA---TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTK--TDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEcc---CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCC--CeEEEEEeCC
Confidence            7999999999998543   33455555544321  222346678899999999999999999888765  7899999999


Q ss_pred             cCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC-
Q 011995          261 FHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-  338 (473)
Q Consensus       261 ~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~-  338 (473)
                      ++|+|.+++... .....+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.++|+|||++..+.... 
T Consensus        76 ~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~  152 (280)
T cd05608          76 NGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR---IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS  152 (280)
T ss_pred             CCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCccceecCCCCc
Confidence            999999887542 23456899999999999999999999999   9999999999999999999999999987654332 


Q ss_pred             -ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhcccccccccccccccccccC
Q 011995          339 -ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLADDCRLSLIMDPQLK  416 (473)
Q Consensus       339 -~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  416 (473)
                       .....+++.|+|||.+.+..++.++|||||||++|||++|+.||......... .....             +....  
T Consensus       153 ~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~-------------~~~~~--  217 (280)
T cd05608         153 KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQR-------------ILNDS--  217 (280)
T ss_pred             cccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHh-------------hcccC--
Confidence             23346789999999999999999999999999999999999999764322111 11110             00000  


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          417 GRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       417 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                      ..++...+..+.+++.+||+.||++||     +++++++.
T Consensus       218 ~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         218 VTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             CCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            122445668899999999999999999     77888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=4.3e-40  Score=327.43  Aligned_cols=252  Identities=16%  Similarity=0.177  Sum_probs=199.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||++....+   .+.+++|+.....  .......+.+|+.++..++|+||+++++++.+.  +.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~--~~   75 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKAT---GDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDK--DN   75 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecC--Ce
Confidence            4788899999999999999985443   3455566555321  233456788999999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++|+|.+++...  ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~---i~H~Dlkp~NIll~~~~~~kL~Dfg~a~  150 (330)
T cd05601          76 LYLVMEYQPGGDLLSLLNRY--EDQFDEDMAQFYLAELVLAIHSVHQMG---YVHRDIKPENVLIDRTGHIKLADFGSAA  150 (330)
T ss_pred             EEEEECCCCCCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEcccCchHheEECCCCCEEeccCCCCe
Confidence            99999999999999999543  346899999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCCCc---cCcccccccCChhhhh------cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLE------RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~------~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      .......   ....+|+.|+|||++.      ...++.++|||||||++|||++|..||...........+.....    
T Consensus       151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~----  226 (330)
T cd05601         151 RLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQR----  226 (330)
T ss_pred             ECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCC----
Confidence            6643322   2236789999999986      45678999999999999999999999987654433222211000    


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                .+........+.++.+|+.+||. +|.+||++.++++.
T Consensus       227 ----------~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         227 ----------FLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             ----------ccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence                      00000012356788999999997 99999999999863

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.5e-39  Score=314.85  Aligned_cols=260  Identities=21%  Similarity=0.331  Sum_probs=203.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||+||++....+   ++.+++++............+.+|+++++.++||||+++++++...  +.++
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~---~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~   79 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPT---GTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNE--NNIC   79 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCC---CcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecC--CEEE
Confidence            4677779999999999999986543   3445555555444455567899999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++..   ...+++..+..++.+++.+|.|||+ ++   ++|+||+|+||+++.++.++|+|||++..
T Consensus        80 lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~d~gl~~~  153 (284)
T cd06620          80 MCMEFMDCGSLDRIYKK---GGPIPVEILGKIAVAVVEGLTYLYNVHR---IMHRDIKPSNILVNSRGQIKLCDFGVSGE  153 (284)
T ss_pred             EEEecCCCCCHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHhcC---eeccCCCHHHEEECCCCcEEEccCCcccc
Confidence            99999999999998854   3468999999999999999999997 46   99999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH-----HHhHhhhcccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-----ERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  408 (473)
                      ..........++..|+|||++.+..++.++|||||||++|||++|..||.......     ......+.....       
T Consensus       154 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------  226 (284)
T cd06620         154 LINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIV-------  226 (284)
T ss_pred             hhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHh-------
Confidence            54333344567899999999988889999999999999999999999998654321     111111111000       


Q ss_pred             cccccccCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          409 LIMDPQLKGRFP-LKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       409 ~~~~~~l~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                         ... ...++ ...+.++.+|+.+||+.||++|||+.|+++...-+.
T Consensus       227 ---~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~  271 (284)
T cd06620         227 ---QEP-PPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQ  271 (284)
T ss_pred             ---hcc-CCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence               000 00111 125578999999999999999999999998754333

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.9e-39  Score=319.77  Aligned_cols=265  Identities=17%  Similarity=0.228  Sum_probs=198.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||+|+...   ....+++|.............+.+|+.++++++|+||+++++++..+  +..+
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~   80 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKL---TENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTD--KSLT   80 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecC---CCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeC--CeEE
Confidence            568888999999999999998543   33445566555443344445678999999999999999999998766  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+ +|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++...
T Consensus        81 lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  154 (309)
T cd07872          81 LVFEYLDK-DLKQYMDDC--GNIMSMHNVKIFLYQILRGLAYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAK  154 (309)
T ss_pred             EEEeCCCC-CHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECccccceec
Confidence            99999965 888887543  345889999999999999999999999   999999999999999999999999998754


Q ss_pred             CCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc--------ccc
Q 011995          335 PET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF--------LAD  403 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~--------~~~  403 (473)
                      ...  ......++..|+|||.+.+ ..++.++|||||||++|||++|++||......+....+......        +..
T Consensus       155 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (309)
T cd07872         155 SVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISS  234 (309)
T ss_pred             CCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcc
Confidence            322  2233467889999999865 45889999999999999999999999876654433332211000        000


Q ss_pred             ccccccccccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCRLSLIMDPQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~~~~~~~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .........+....    ......+.++.+++.+||+.||.+|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         235 NDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            00000000000000    011235678899999999999999999999987

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3e-39  Score=310.09  Aligned_cols=250  Identities=16%  Similarity=0.250  Sum_probs=199.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC----ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ++|...+.||+|++|.||+|...+   ..+.+++++......    ......+.+|++++++++||||+++++++.++  
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~---~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVD---TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDD--   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcC---CCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccC--
Confidence            578999999999999999998543   234455555443221    12245688999999999999999999999776  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..++|+||+++++|.+++..   ...+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||+
T Consensus        77 ~~~~~v~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nilv~~~~~~~l~dfg~  150 (263)
T cd06625          77 ETLSIFMEYMPGGSVKDQLKA---YGALTETVTRKYTRQILEGVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGA  150 (263)
T ss_pred             CeEEEEEEECCCCcHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeccc
Confidence            799999999999999999854   245889999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +........     ....++..|+|||.+.+..++.++|||||||++|||++|+.||.............          
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~----------  220 (263)
T cd06625         151 SKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIA----------  220 (263)
T ss_pred             ceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHh----------
Confidence            875532211     23356789999999998889999999999999999999999997654332221110          


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            .......++...+..+.+++.+||..+|.+|||+.++++.
T Consensus       221 ------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         221 ------TQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             ------ccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence                  0001112344566789999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.8e-39  Score=313.01  Aligned_cols=255  Identities=20%  Similarity=0.320  Sum_probs=201.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||++.....   .+.++++.............+.+|++++.+++|+||+++++++..+  +..+
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~---~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~   75 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPT---GVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIE--GAVY   75 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCC---CcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecC--CeEE
Confidence            3677889999999999999986533   3445555554443444557899999999999999999999988776  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|..++........+++..+..++.|++.||.|||+. +   |+|+||||+||+++.++.+||+|||++..
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~  152 (286)
T cd06622          76 MCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN---IIHRDVKPTNVLVNGNGQVKLCDFGVSGN  152 (286)
T ss_pred             EEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCC---EeeCCCCHHHEEECCCCCEEEeecCCccc
Confidence            9999999999999886533344789999999999999999999974 6   99999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCC------CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGL------LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~------~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ..........++..|+|||.+.+..      ++.++|||||||++|||++|..||.............            
T Consensus       153 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~------------  220 (286)
T cd06622         153 LVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLS------------  220 (286)
T ss_pred             ccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHH------------
Confidence            6544444556778999999985543      4789999999999999999999997644322211111            


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       .+.+. ....++..++.++.+|+.+||+.+|.+||++.+++..
T Consensus       221 -~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         221 -AIVDG-DPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             -HHhhc-CCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence             00000 0112344577889999999999999999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.2e-39  Score=322.29  Aligned_cols=248  Identities=18%  Similarity=0.277  Sum_probs=191.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   .+.+++|+.....  .......+.+|+.++..+ +||||+++++++.+.  +.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~---~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~--~~~~lv~   75 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKT---RRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTE--SRLFFVI   75 (329)
T ss_pred             CeEeeCCCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcC--CEEEEEE
Confidence            4699999999999986543   3455666655321  233456688999999998 799999999998766  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC--
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP--  335 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~--  335 (473)
                      ||+++|+|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++....  
T Consensus        76 e~~~~g~L~~~~~~---~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~  149 (329)
T cd05588          76 EFVSGGDLMFHMQR---QRKLPEEHARFYSAEISLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRP  149 (329)
T ss_pred             eCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEECcCccccccccC
Confidence            99999999988843   346999999999999999999999999   9999999999999999999999999987532  


Q ss_pred             CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH--HHhHhhhccccccccccccccccc
Q 011995          336 ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE--ERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       336 ~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ........+|..|+|||++.+..++.++|||||||++|||++|+.||.......  ......+..         ..+...
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~---------~~~~~~  220 (329)
T cd05588         150 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLF---------QVILEK  220 (329)
T ss_pred             CCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHH---------HHHHcC
Confidence            222334578999999999999899999999999999999999999996422111  000000000         000011


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCC------HHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPT------MRSIFE  450 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt------~~eil~  450 (473)
                      .  ..++..++.++.+++.+||+.||.+|++      ++++++
T Consensus       221 ~--~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         221 Q--IRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             C--CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhc
Confidence            1  1124455678999999999999999997      667764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=7.5e-39  Score=319.11  Aligned_cols=263  Identities=20%  Similarity=0.345  Sum_probs=205.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCC----eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA----STSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      .+|.+.+.||+|+||.||+|...+..    .....+++++...........++.+|++++.++ +|+||+++++++... 
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-   90 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-   90 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC-
Confidence            36888899999999999999753211    111233444433333344567899999999999 899999999998765 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                       +..++||||+++|+|.+++....             ....+++..++.++.|++.||.|||+++   |+||||||+|||
T Consensus        91 -~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nil  166 (334)
T cd05100          91 -GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK---CIHRDLAARNVL  166 (334)
T ss_pred             -CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEE
Confidence             68899999999999999986532             1245889999999999999999999999   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ++.++.+||+|||+++.......    ....++..|+|||++.+..++.++|||||||++|||++ |..||.........
T Consensus       167 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~  246 (334)
T cd05100         167 VTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELF  246 (334)
T ss_pred             EcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence            99999999999999876543221    11233467999999998889999999999999999998 88999776544432


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ..+...                 .....+...+..+.+++.+||+.+|.+||++.++++.|+++....
T Consensus       247 ~~~~~~-----------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~  297 (334)
T cd05100         247 KLLKEG-----------------HRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVT  297 (334)
T ss_pred             HHHHcC-----------------CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhc
Confidence            222100                 000113344578999999999999999999999999999887444

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=5.4e-39  Score=307.25  Aligned_cols=250  Identities=19%  Similarity=0.254  Sum_probs=202.5

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +|+..+.||+|+||.||++....   ..+.++++..+........+.+.+|+.+++.++|+||+++++++.+.  +.+++
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~---~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~l   75 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVN---SDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEAD--GHLYI   75 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcC---CCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEEC--CEEEE
Confidence            47788999999999999998543   34556666665544445567888999999999999999999998765  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+++|+|.+++... ....+++..+..++.|++.||.|||+++   |+|+||||+||+++.++.++|+|||++....
T Consensus        76 v~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  151 (255)
T cd08219          76 VMEYCDGGDLMQKIKLQ-RGKLFPEDTILQWFVQMCLGVQHIHEKR---VLHRDIKSKNIFLTQNGKVKLGDFGSARLLT  151 (255)
T ss_pred             EEeeCCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEECCCCcEEEcccCcceeec
Confidence            99999999999988543 3446889999999999999999999999   9999999999999999999999999987664


Q ss_pred             CCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          336 ETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       336 ~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ...  .....++..|+|||++.+..++.++||||||+++|+|++|..||...........+....               
T Consensus       152 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~---------------  216 (255)
T cd08219         152 SPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGS---------------  216 (255)
T ss_pred             ccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCC---------------
Confidence            322  223467788999999988889999999999999999999999998655433222111000               


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ....+...+..+.+|+.+||+.||++||++.+|+..
T Consensus       217 --~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         217 --YKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             --CCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence              001233456778999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=9.3e-39  Score=308.20  Aligned_cols=254  Identities=22%  Similarity=0.283  Sum_probs=189.0

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||+|+||.||+|...+.. ....++++.............+.+|+.+++.++|+||+++++++...  ...++||||+
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~--~~~~lv~e~~   77 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGM-SKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIES--IPYLLVLEFC   77 (269)
T ss_pred             CcCCccCCceEEEEEEecCC-CCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCC--CceEEEEEeC
Confidence            35899999999999764432 22233344333333344456788999999999999999999998765  7899999999


Q ss_pred             cCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC
Q 011995          261 FHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~  338 (473)
                      ++|+|.+++.....  ...+++.....++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||++.......
T Consensus        78 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~  154 (269)
T cd05042          78 PLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD---FIHSDLALRNCQLTADLSVKIGDYGLALEQYPED  154 (269)
T ss_pred             CCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC---EecccccHhheEecCCCcEEEeccccccccccch
Confidence            99999999965422  234578888999999999999999999   9999999999999999999999999986543221


Q ss_pred             c----cCcccccccCChhhhhc-------CCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          339 I----SNSSVAAANLSVETLER-------GLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       339 ~----~~~~~t~~y~aPE~~~~-------~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      .    ....++..|+|||++..       ..++.++|||||||++|||++ |..||......+....+...        .
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~--------~  226 (269)
T cd05042         155 YYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVRE--------Q  226 (269)
T ss_pred             heeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhc--------c
Confidence            1    22234567999999753       346789999999999999999 78898765443322111100        0


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ...+..+    ..+...+..+.+++..|| .||++|||+.+|++.|.
T Consensus       227 ~~~~~~~----~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         227 DIKLPKP----QLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             CccCCCC----cccccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            0011111    123345577888999999 59999999999999873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=7.4e-39  Score=312.30  Aligned_cols=261  Identities=21%  Similarity=0.370  Sum_probs=201.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|++.+.||+|+||.||+|...+..  .....+++|.............+.+|+.+++.++|+||+++++++...  +
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~   82 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG--Q   82 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--C
Confidence            567889999999999999999765321  122344444433222233445688999999999999999999998765  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC-------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD-------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      ..++||||+++|+|.+++.....       ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.++
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dikp~nili~~~~~~~  159 (288)
T cd05061          83 PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK---FVHRDLAARNCMVAHDFTVK  159 (288)
T ss_pred             CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCCChheEEEcCCCcEE
Confidence            88999999999999999964321       234577888999999999999999999   99999999999999999999


Q ss_pred             EeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||+++.......    ....++..|+|||.+.+..++.++|||||||++|||++ |..||...........+.    
T Consensus       160 L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~----  235 (288)
T cd05061         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVM----  235 (288)
T ss_pred             ECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH----
Confidence            999999876543221    12234567999999998889999999999999999998 788997654433222111    


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                         ....          ...+...+..+.+++.+||+.||.+|||+.++++.|++..
T Consensus       236 ---~~~~----------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         236 ---DGGY----------LDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             ---cCCC----------CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence               0000          0112334578999999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=9.1e-39  Score=305.37  Aligned_cols=250  Identities=19%  Similarity=0.266  Sum_probs=201.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|+||.||+|....+.   +.++++..... ........+.+|+++++.++||||+++++++...  +..+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADK---RVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDK--GKLN   75 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCC---cEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccC--CEEE
Confidence            4777799999999999999875443   44445544432 2344567889999999999999999999998766  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        76 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~~l~~al~~lH~~~---i~h~dl~~~nili~~~~~~~l~df~~~~~~  151 (256)
T cd08529          76 IVMEYAENGDLHKLLKMQ-RGRPLPEDQVWRFFIQILLGLAHLHSKK---ILHRDIKSLNLFLDAYDNVKIGDLGVAKLL  151 (256)
T ss_pred             EEEEeCCCCcHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEeCCCCEEEcccccceec
Confidence            999999999999999653 2457899999999999999999999998   999999999999999999999999998766


Q ss_pred             CCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .....  ....++..|+|||++.+..++.++|||||||++|||++|+.||...........+..                
T Consensus       152 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~----------------  215 (256)
T cd08529         152 SDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIR----------------  215 (256)
T ss_pred             cCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHc----------------
Confidence            43321  233567899999999988899999999999999999999999987653332211110                


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       .....++...+..+.+++.+||+.+|++||++.++++.
T Consensus       216 -~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         216 -GVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             -CCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence             00011223456789999999999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-38  Score=309.15  Aligned_cols=259  Identities=20%  Similarity=0.342  Sum_probs=205.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCee-eeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAST-SKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+|+..+.||+|+||.||+|.+.++... ...+++++............+.+|+.++.+++|+||+++++++..   ...
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~   83 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS---SQV   83 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec---Cce
Confidence            4677779999999999999987554322 233444444333334455788999999999999999999999875   678


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+.+   ++|+||||+|||++.++.+||+|||++..
T Consensus        84 ~~v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          84 QLITQLMPLGCLLDYVRNH--KDNIGSQYLLNWCVQIAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             EEEEecCCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecccCcceEEEcCCCeEEECCCccccc
Confidence            9999999999999999643  345899999999999999999999998   99999999999999999999999999976


Q ss_pred             cCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ......    .....+..|++||.+....++.++|||||||++|||++ |..||......+....+.....         
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~---------  229 (279)
T cd05057         159 LDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGER---------  229 (279)
T ss_pred             ccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCC---------
Confidence            643221    11123467999999988889999999999999999998 9999987655443322221000         


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                              ...+..++..+.+++.+||..||.+||++.++++.|+++.+.
T Consensus       230 --------~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         230 --------LPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             --------CCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence                    011223446789999999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.7e-39  Score=305.63  Aligned_cols=251  Identities=22%  Similarity=0.382  Sum_probs=201.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||.|+||.||+|...+.     .+++|....  .....+++.+|+.+++.++|+||+++++++...  +..
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~~~-----~v~iK~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~   75 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYRGQ-----KVAVKCLKD--DSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQG--NPL   75 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEecCc-----EEEEEEecc--chhHHHHHHHHHHHHHhcCCcceeeeEEEEcCC--CCe
Confidence            35678889999999999999986532     333444332  223567899999999999999999999998764  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++.... ...+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++..
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          76 YIVTEYMAKGSLVDYLRSRG-RAVITLAQQLGFALDVCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             EEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccchhcccceEEEeCCCCEEEcccccccc
Confidence            99999999999999986532 236899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... .....+..|+|||.+.+..++.++||||||+++|||++ |..||...........+..       +        
T Consensus       152 ~~~~~-~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~-------~--------  215 (256)
T cd05039         152 ASQGQ-DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEK-------G--------  215 (256)
T ss_pred             ccccc-ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhc-------C--------
Confidence            63322 23344568999999988889999999999999999997 9999976654332221110       0        


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                        .....+...+..+.+++.+||..+|++||++.++++.|+.+
T Consensus       216 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         216 --YRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             --CCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence              00111234467899999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=3e-39  Score=321.29  Aligned_cols=249  Identities=17%  Similarity=0.274  Sum_probs=190.8

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   .+.+++|+....  ........+.+|+.++.++ +||||+++++++...  +..++||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~--~~~~lv~   75 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKT---ERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE--SRLFFVI   75 (329)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeC--CEEEEEE
Confidence            4699999999999986543   344556555432  2334456678899998877 899999999998776  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|..++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..... 
T Consensus        76 E~~~~~~L~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~  149 (329)
T cd05618          76 EYVNGGDLMFHMQR---QRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP  149 (329)
T ss_pred             eCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCCEEEeeCCccccccCC
Confidence            99999999988843   346899999999999999999999999   99999999999999999999999999875422 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH--HhHhhhccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                       .......+|..|+|||++.+..++.++|||||||++|||++|..||........  .....+..         ..+...
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~---------~~i~~~  220 (329)
T cd05618         150 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF---------QVILEK  220 (329)
T ss_pred             CCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHH---------HHHhcC
Confidence             222345789999999999999999999999999999999999999953211100  00000000         000000


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCC------HHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPT------MRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt------~~eil~~  451 (473)
                        ...++...+..+.+++.+||+.||.+||+      +.++++.
T Consensus       221 --~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05618         221 --QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  262 (329)
T ss_pred             --CCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcC
Confidence              11234556688999999999999999998      4566543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-38  Score=306.01  Aligned_cols=252  Identities=22%  Similarity=0.404  Sum_probs=201.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|.+.+.||+|+||.||+|...++    +.+++|  .+.........+.+|+.+++.++|+||+++++++...  ...
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~----~~~~vK--~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   76 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGT----TKVAVK--TLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEE--EPI   76 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCC----ceEEEE--EecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecC--Cce
Confidence            46788899999999999999986543    223333  3333344567899999999999999999999988765  678


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++... .+..+++..+..++.+++.||.|||+.+   ++|+||||+||+++.++.+||+|||++..
T Consensus        77 ~~v~e~~~~~~L~~~i~~~-~~~~~~~~~~~~~~~~i~~al~~lh~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~  152 (261)
T cd05034          77 YIVTEYMSKGSLLDFLKSG-EGKKLRLPQLVDMAAQIAEGMAYLESRN---YIHRDLAARNILVGENLVCKIADFGLARL  152 (261)
T ss_pred             EEEEeccCCCCHHHHHhcc-ccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcchheEEEcCCCCEEECcccccee
Confidence            9999999999999999653 3456899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +......   ....+..|+|||.+.+..++.++|||||||++|||++ |+.||.+.........+...            
T Consensus       153 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~------------  220 (261)
T cd05034         153 IEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERG------------  220 (261)
T ss_pred             ccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC------------
Confidence            6432211   2233568999999998889999999999999999998 99999765543322221110            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                           .....+...+.++.+++.+||..+|.+||++.++++.|+.
T Consensus       221 -----~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         221 -----YRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence                 0001122335789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.2e-39  Score=321.80  Aligned_cols=241  Identities=19%  Similarity=0.205  Sum_probs=187.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHH-HHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~-~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||+||+|....+   .+.+++|+.....  .......+..|.. +++.++|+||+++++++...  +..|+||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~--~~~~lv~   75 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAE---EKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA--DKLYFVL   75 (325)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcC--CeEEEEE
Confidence            4699999999999986543   3445566554321  1222344455544 56788999999999988766  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|.+++..   ...+.+..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++..... 
T Consensus        76 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~L~~lH~~g---iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~  149 (325)
T cd05602          76 DYINGGELFYHLQR---ERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEH  149 (325)
T ss_pred             eCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEEccCCCCcccccC
Confidence            99999999999854   345788889999999999999999999   99999999999999999999999999875422 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                       .......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+..                .. 
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~----------------~~-  212 (325)
T cd05602         150 NGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILN----------------KP-  212 (325)
T ss_pred             CCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHh----------------CC-
Confidence             223345789999999999999999999999999999999999999987655443222110                00 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       ..++...+..+.+++.+||+.||.+|+++.+.+.
T Consensus       213 -~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         213 -LQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             -cCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHH
Confidence             0112345678899999999999999999875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.5e-38  Score=305.74  Aligned_cols=259  Identities=19%  Similarity=0.259  Sum_probs=204.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||+|....   .++.++++..+..  ........+.+|++++++++|+||+++++++...  +.
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~---~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~--~~   76 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLL---DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIEN--NE   76 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcC---CCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecC--Ce
Confidence            678999999999999999998653   2344455544322  1233457789999999999999999999998776  78


Q ss_pred             eEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .++||||+++|+|.+++... .....+++..+..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++
T Consensus        77 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~nil~~~~~~~~l~d~~~~  153 (267)
T cd08224          77 LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR---IMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             EEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC---EecCCcChhhEEECCCCcEEEecccee
Confidence            89999999999999988542 22456899999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .......  .....++..|+|||.+.+..++.++|||||||++|+|++|..||........ ......    ..      
T Consensus       154 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~----~~------  222 (267)
T cd08224         154 RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-SLCKKI----EK------  222 (267)
T ss_pred             eeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHH-HHHhhh----hc------
Confidence            7654322  2234577889999999888899999999999999999999999965432110 111100    00      


Q ss_pred             ccccccCCCCCH-HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          410 IMDPQLKGRFPL-KAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       410 ~~~~~l~~~~~~-~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                          ......+. ..+..+.+++.+||..+|++|||+.+|++.|+++.
T Consensus       223 ----~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         223 ----CDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             ----CCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence                00011122 55678999999999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=3.9e-39  Score=312.59  Aligned_cols=249  Identities=16%  Similarity=0.224  Sum_probs=190.5

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||+|+||.||++.....   ++.++++......  .......+..|+++++.++||||+++++++..+  ...++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~---~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~--~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKNT---GKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESK--THLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEccC---CcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecC--CeEEEEEecC
Confidence            79999999999986543   3445555443221  122334566799999999999999999988765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC-c
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-I  339 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~-~  339 (473)
                      ++++|.+++... ....+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.++|+|||++....... .
T Consensus        76 ~g~~L~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~  151 (277)
T cd05607          76 NGGDLKYHIYNV-GERGLEMERVIHYSAQITCGILHLHSMD---IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTI  151 (277)
T ss_pred             CCCCHHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHHCC---EEEccCChHhEEEcCCCCEEEeeceeeeecCCCcee
Confidence            999999888543 2345899999999999999999999999   9999999999999999999999999987664332 2


Q ss_pred             cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCC
Q 011995          340 SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF  419 (473)
Q Consensus       340 ~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  419 (473)
                      ....++..|+|||++.+..++.++|||||||++|||++|..||...........+..  ....          ..... .
T Consensus       152 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~--~~~~----------~~~~~-~  218 (277)
T cd05607         152 TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKR--RTLE----------DEVKF-E  218 (277)
T ss_pred             eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHH--Hhhc----------ccccc-c
Confidence            334678899999999988899999999999999999999999976433211111100  0000          00000 0


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       420 ~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ....+.++.+++.+||+.||.+||+++|+++.+.
T Consensus       219 ~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~  252 (277)
T cd05607         219 HQNFTEESKDICRLFLAKKPEDRLGSREKNDDPR  252 (277)
T ss_pred             cccCCHHHHHHHHHHhccCHhhCCCCccchhhhh
Confidence            1235678899999999999999999977664433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.8e-39  Score=322.13  Aligned_cols=237  Identities=20%  Similarity=0.220  Sum_probs=186.6

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHH-HHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~-~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   ++.+++|+.....  .......+..|.. +++.++||||+++++++...  +..++||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~--~~~~lv~   75 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKAD---GKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTA--DKLYFVL   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeC--CEEEEEE
Confidence            4699999999999986443   3455566554321  2223345555555 56789999999999988765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++..... 
T Consensus        76 e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~g---ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~  149 (323)
T cd05575          76 DYVNGGELFFHLQR---ERSFPEPRARFYAAEIASALGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEH  149 (323)
T ss_pred             cCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeccCCCcccccC
Confidence            99999999998853   346899999999999999999999999   99999999999999999999999999875422 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                       .......+|+.|+|||++.+..++.++|||||||++|||++|..||......+....+...                . 
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~----------------~-  212 (323)
T cd05575         150 SKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNK----------------P-  212 (323)
T ss_pred             CCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcC----------------C-
Confidence             2223456899999999999989999999999999999999999999876544332222100                0 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMR  446 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  446 (473)
                       ..++...+..+.+++.+||+.||.+||++.
T Consensus       213 -~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         213 -LRLKPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             -CCCCCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence             011233467899999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-40  Score=333.99  Aligned_cols=249  Identities=17%  Similarity=0.255  Sum_probs=202.2

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      .+||+|+|-+||+|........+.+-.+++..+..+....++|..|+.+|+.|+|+|||++|.++.+....++.+|.|+|
T Consensus        46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~  125 (632)
T KOG0584|consen   46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELF  125 (632)
T ss_pred             hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecc
Confidence            67999999999999854443333333344444445667778999999999999999999999999887667799999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEeccCCCcccCCCCc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYGCAGHIPETDI  339 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~DFGla~~~~~~~~  339 (473)
                      ..|+|..|+.+   ...++...++.|++||+.||.|||++.| +|||||||.+||+|+.+ |.|||+|+|||........
T Consensus       126 TSGtLr~Y~kk---~~~vn~kaik~W~RQILkGL~yLHs~~P-PIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a  201 (632)
T KOG0584|consen  126 TSGTLREYRKK---HRRVNIKAIKSWCRQILKGLVYLHSQDP-PIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA  201 (632)
T ss_pred             cCCcHHHHHHH---hccCCHHHHHHHHHHHHHHhhhhhcCCC-CccccccccceEEEcCCcCceeecchhHHHHhhcccc
Confidence            99999999954   4468889999999999999999999986 59999999999999865 9999999999998877777


Q ss_pred             cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH-HHhHhhhcccccccccccccccccccCCC
Q 011995          340 SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-ERNLVKWSRPFLADDCRLSLIMDPQLKGR  418 (473)
Q Consensus       340 ~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (473)
                      ....|||.|||||.+. ..|+..+||||||+.++||+|+..||..-.... ....+.-...    ...+..         
T Consensus       202 ksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiK----P~sl~k---------  267 (632)
T KOG0584|consen  202 KSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIK----PAALSK---------  267 (632)
T ss_pred             ceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCC----HHHhhc---------
Confidence            7789999999999997 789999999999999999999999997644332 2222211100    001112         


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       419 ~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         --.+++++||.+||.. .++|+|+.|+|+.
T Consensus       268 ---V~dPevr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  268 ---VKDPEVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             ---cCCHHHHHHHHHHhcC-chhccCHHHHhhC
Confidence               1236789999999999 9999999999863

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-40  Score=327.94  Aligned_cols=248  Identities=23%  Similarity=0.313  Sum_probs=204.4

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |...+.||.|+||.||.|+   +..+...+++|......  +......++.|+..|.+++|||+|.+-|+|..+  ...|
T Consensus        28 f~dLrEIGHGSFGAVYfAr---d~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre--~TaW  102 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFAR---DVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLRE--HTAW  102 (948)
T ss_pred             HHHHHHhcCCccceeEEee---ccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeecc--chHH
Confidence            6666899999999999998   44444555565554432  344567899999999999999999999999877  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      |||||| -||-.|+|.-  ...++-+..+..|..+.++||+|||+++   .||||||..||||++.|.|||+|||.|...
T Consensus       103 LVMEYC-lGSAsDlleV--hkKplqEvEIAAi~~gaL~gLaYLHS~~---~IHRDiKAGNILLse~g~VKLaDFGSAsi~  176 (948)
T KOG0577|consen  103 LVMEYC-LGSASDLLEV--HKKPLQEVEIAAITHGALQGLAYLHSHN---RIHRDIKAGNILLSEPGLVKLADFGSASIM  176 (948)
T ss_pred             HHHHHH-hccHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHHhh---HHhhhccccceEecCCCeeeeccccchhhc
Confidence            999999 5688888743  4567999999999999999999999999   999999999999999999999999998776


Q ss_pred             CCCCccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .  ...+++|||.|||||++.   .+.|+-++||||||++..||...++|+...+......-|....             
T Consensus       177 ~--PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNe-------------  241 (948)
T KOG0577|consen  177 A--PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-------------  241 (948)
T ss_pred             C--chhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcC-------------
Confidence            3  346789999999999984   5779999999999999999999999998877655433222111             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .|.+.   ....+..+++|+..||++-|.+|||.+++++.--
T Consensus       242 sPtLq---s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~f  280 (948)
T KOG0577|consen  242 SPTLQ---SNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRF  280 (948)
T ss_pred             CCCCC---CchhHHHHHHHHHHHHhhCcccCCcHHHHhhcch
Confidence            11121   3577899999999999999999999999987543

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=4.2e-39  Score=319.47  Aligned_cols=241  Identities=18%  Similarity=0.231  Sum_probs=192.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~  252 (473)
                      +|+..+.||+|+||.||+|....   ..+.+++|+.....  .......+..|+.++..+. |++|+++++++...  +.
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~--~~   75 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKG---TDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTV--DR   75 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECC---CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecC--CE
Confidence            46777999999999999998544   34455666654321  2334566788999998885 56778888887765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~Ey~~~g~L~~~i~~---~~~l~~~~~~~i~~qi~~al~~lH~~~---ivHrDikp~Nill~~~~~ikL~Dfg~~~  149 (323)
T cd05615          76 LYFVMEYVNGGDLMYHIQQ---VGKFKEPQAVFYAAEISVGLFFLHRRG---IIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             EEEEEcCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEecccccc
Confidence            9999999999999999853   346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....  ......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+...             
T Consensus       150 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~-------------  216 (323)
T cd05615         150 EHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEH-------------  216 (323)
T ss_pred             ccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhC-------------
Confidence            54322  223446889999999999888999999999999999999999999876544332222110             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                           ...++...+.++.+++.+||+.||.+|++.
T Consensus       217 -----~~~~p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         217 -----NVSYPKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             -----CCCCCccCCHHHHHHHHHHcccCHhhCCCC
Confidence                 011234456788999999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=4.7e-39  Score=310.46  Aligned_cols=253  Identities=21%  Similarity=0.303  Sum_probs=196.7

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC--
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG--  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~--  249 (473)
                      +++.|+..+.||+|+||.||+|...+..   ..+++++...  .......+.+|+.++.++ +|+||+++++++....  
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~---~~~aik~~~~--~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTG---QLAAIKVMDV--TGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   78 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCC---cEEEEEEEEc--CCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC
Confidence            4567888899999999999999865433   3444554433  233456788999999998 7999999999987542  


Q ss_pred             --CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          250 --SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       250 --~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                        ....++||||+.+++|.+++... ....+++..+..++.|++.||+|||+++   |+|+||||+||+++.++.++|+|
T Consensus        79 ~~~~~~~iv~e~~~~~~L~~~l~~~-~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivh~dl~~~nili~~~~~~~l~D  154 (272)
T cd06637          79 GMDDQLWLVMEFCGAGSVTDLIKNT-KGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVD  154 (272)
T ss_pred             CCCcEEEEEEEcCCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHEEECCCCCEEEcc
Confidence              24689999999999999998653 2456899999999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccCCC--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          328 YGCAGHIPET--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       328 FGla~~~~~~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      ||++......  ......++..|+|||++.     +..++.++|||||||++|||++|..||..............    
T Consensus       155 fg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~----  230 (272)
T cd06637         155 FGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPR----  230 (272)
T ss_pred             CCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhc----
Confidence            9998765332  223346788999999986     33578899999999999999999999976543332211110    


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         .      ..+..   .....+..+.+|+.+||..||.+|||+.++++
T Consensus       231 ---~------~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         231 ---N------PAPRL---KSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             ---C------CCCCC---CCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence               0      00000   12234567899999999999999999999985

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2e-38  Score=326.87  Aligned_cols=259  Identities=17%  Similarity=0.248  Sum_probs=191.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|.+.+.||+|+||.||+|......   ..+++|..       ....+.+|+++|++++|+|||++++++...  +..+
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~---~~vavK~~-------~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~--~~~~  236 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYP---QRVVVKAG-------WYASSVHEARLLRRLSHPAVLALLDVRVVG--GLTC  236 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCC---CEEEEecc-------cccCHHHHHHHHHHCCCCCCCcEEEEEEEC--CEEE
Confidence            36888999999999999999865432   33334421       234567899999999999999999998776  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|||++ .++|.+++...  ...+++..++.|+.||+.||.|||+++   ||||||||+||||+.++.+||+|||+++..
T Consensus       237 lv~e~~-~~~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDLKP~NILl~~~~~vkL~DFGla~~~  310 (461)
T PHA03211        237 LVLPKY-RSDLYTYLGAR--LRPLGLAQVTAVARQLLSAIDYIHGEG---IIHRDIKTENVLVNGPEDICLGDFGAACFA  310 (461)
T ss_pred             EEEEcc-CCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECcCCHHHEEECCCCCEEEcccCCceec
Confidence            999999 46898888542  346999999999999999999999999   999999999999999999999999999765


Q ss_pred             CCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCC--------hHHHHhHhhhcccccc
Q 011995          335 PETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRH--------PKEERNLVKWSRPFLA  402 (473)
Q Consensus       335 ~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~--------~~~~~~~~~~~~~~~~  402 (473)
                      ....    .....+|..|+|||++.+..++.++|||||||++|||++|..++....        ......++.+......
T Consensus       311 ~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~  390 (461)
T PHA03211        311 RGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVD  390 (461)
T ss_pred             ccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccc
Confidence            4321    123468999999999999899999999999999999999876553221        1112222222211100


Q ss_pred             ccc-----ccc-c-------cccccc-CCCCC--HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 DDC-----RLS-L-------IMDPQL-KGRFP--LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ~~~-----~~~-~-------~~~~~l-~~~~~--~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .-.     .+. .       ...+.. ...+.  ...+.++.+||.+||+.||.+|||+.|+|+.
T Consensus       391 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        391 EFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             cCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence            000     000 0       000000 00000  1234578899999999999999999999975

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=2.7e-39  Score=326.64  Aligned_cols=264  Identities=17%  Similarity=0.230  Sum_probs=208.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-C-----CCcccceeeeecC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-H-----PNLCKLLGFHARD  248 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-H-----pnIv~l~g~~~~~  248 (473)
                      -+|++.+.||+|+||.|-+|.   +..+...+|+|+++.+  ..-..+...|+.+|..++ |     -|+|++++||...
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~---d~~T~e~VAIKIiKN~--k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr  260 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAY---DHKTGEIVAIKIIKNK--KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFR  260 (586)
T ss_pred             EEEEEEEEecccccceeEEEE---ecCCCcEEEEEeeccC--hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccc
Confidence            378899999999999999998   4456667777776643  344566778999999996 4     3899999999877


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC--CcEEEe
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD--FSAKLS  326 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~--~~vkl~  326 (473)
                        +++|||+|.+ ..+|.++|..+ ....|+...+..|+.||+.||.+||..+   |||+||||+||||.+-  ..+||+
T Consensus       261 --~HlciVfELL-~~NLYellK~n-~f~Glsl~~ir~~~~Qil~~L~~L~~l~---IIHcDLKPENILL~~~~r~~vKVI  333 (586)
T KOG0667|consen  261 --NHLCIVFELL-STNLYELLKNN-KFRGLSLPLVRKFAQQILTALLFLHELG---IIHCDLKPENILLKDPKRSRIKVI  333 (586)
T ss_pred             --cceeeeehhh-hhhHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCChhheeeccCCcCceeEE
Confidence              8999999999 45999999765 3556999999999999999999999999   9999999999999643  479999


Q ss_pred             ccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc---------
Q 011995          327 GYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS---------  397 (473)
Q Consensus       327 DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~---------  397 (473)
                      |||.+++....-+ ....+..|.|||++.|..|+.+.||||||||+.||++|.+.|.+.++.++...+...         
T Consensus       334 DFGSSc~~~q~vy-tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL  412 (586)
T KOG0667|consen  334 DFGSSCFESQRVY-TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKML  412 (586)
T ss_pred             ecccccccCCcce-eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            9999998766554 677889999999999999999999999999999999999999999887766554210         


Q ss_pred             ------cccccc-cccc-----cc--------------------cccc-c---cCCCCCHHHHHHHHHHHHHhcccCCCC
Q 011995          398 ------RPFLAD-DCRL-----SL--------------------IMDP-Q---LKGRFPLKAARTVADIALRCLQKEPSE  441 (473)
Q Consensus       398 ------~~~~~~-~~~~-----~~--------------------~~~~-~---l~~~~~~~~~~~l~~li~~cl~~dP~~  441 (473)
                            ..+... ....     ..                    ...| .   +...+.......+.+|+.+||..||.+
T Consensus       413 ~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~  492 (586)
T KOG0667|consen  413 DTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAE  492 (586)
T ss_pred             HhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchh
Confidence                  111111 0000     00                    0001 0   001112244567899999999999999


Q ss_pred             CCCHHHHHHH
Q 011995          442 RPTMRSIFEE  451 (473)
Q Consensus       442 RPt~~eil~~  451 (473)
                      |+|+.+.|+.
T Consensus       493 R~tp~qal~H  502 (586)
T KOG0667|consen  493 RITPAQALNH  502 (586)
T ss_pred             cCCHHHHhcC
Confidence            9999999874

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=5.1e-39  Score=311.39  Aligned_cols=244  Identities=20%  Similarity=0.377  Sum_probs=187.2

Q ss_pred             ceeecCCceEEEEEECCCC-------------------eeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccc
Q 011995          182 CISEGLSSVMYRASFGDDA-------------------STSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKL  241 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l  241 (473)
                      .||+|+||.||+|.+....                   .......++++.+... ......+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            6999999999999863211                   1122334555555432 2234578889999999999999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                      ++++...  ...++||||+++|+|..++..  ....+++..+..++.||+.||+|||+++   |+||||||+|||++.++
T Consensus        82 ~~~~~~~--~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~Nill~~~~  154 (274)
T cd05076          82 HGVCVRG--SENIMVEEFVEHGPLDVCLRK--EKGRVPVAWKITVAQQLASALSYLEDKN---LVHGNVCAKNILLARLG  154 (274)
T ss_pred             EEEEEeC--CceEEEEecCCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHcCC---ccCCCCCcccEEEeccC
Confidence            9999876  788999999999999998854  2346899999999999999999999998   99999999999997643


Q ss_pred             -------cEEEeccCCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHH-HcCCCCCCCCChHHHHh
Q 011995          322 -------SAKLSGYGCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLEL-LTGRKNLDSRHPKEERN  392 (473)
Q Consensus       322 -------~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~el-ltG~~p~~~~~~~~~~~  392 (473)
                             .+|++|||++......  ....++..|+|||.+.+ ..++.++|||||||++||| ++|..||......+...
T Consensus       155 ~~~~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~  232 (274)
T cd05076         155 LAEGTSPFIKLSDPGVSFTALSR--EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKER  232 (274)
T ss_pred             cccCccceeeecCCccccccccc--cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHH
Confidence                   3899999987644222  22346778999998865 4589999999999999998 57999997654433222


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .....               ..    ++......+.++|.+||+.+|++|||+.+|++.|.
T Consensus       233 ~~~~~---------------~~----~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         233 FYEKK---------------HR----LPEPSCKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             HHHhc---------------cC----CCCCCChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence            11100               00    11122357899999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=3.2e-39  Score=349.05  Aligned_cols=264  Identities=16%  Similarity=0.180  Sum_probs=202.3

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|.+.+.||+|+||+||+|....   ....+++++..... .......|..|+.+|..++|||||+++++|.....
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~---tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~   86 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKR---TQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKAN   86 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECC---CCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCC
Confidence            445789999999999999999998654   34455555554432 33445778999999999999999999998876555


Q ss_pred             CceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCC----CceeecCCCCCceeeCC------
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGP----FQAMYNEFSTANIQIDK------  319 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~----~~ivHrDlkp~NILl~~------  319 (473)
                      ..+||||||+++|+|.++|.... ....+++..++.|+.||+.||.|||..+.    ..||||||||+||||+.      
T Consensus        87 ~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg  166 (1021)
T PTZ00266         87 QKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIG  166 (1021)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccc
Confidence            77999999999999999986422 23569999999999999999999998541    13999999999999964      


Q ss_pred             -----------CCcEEEeccCCCcccCCCCc-cCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCCCC
Q 011995          320 -----------DFSAKLSGYGCAGHIPETDI-SNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLDSR  385 (473)
Q Consensus       320 -----------~~~vkl~DFGla~~~~~~~~-~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~~~  385 (473)
                                 .+.+||+|||++..+..... ....+|+.|+|||++.+  ..++.++||||||||||||++|..||...
T Consensus       167 ~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~  246 (1021)
T PTZ00266        167 KITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA  246 (1021)
T ss_pred             cccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence                       34589999999987643322 34468999999999864  45889999999999999999999999765


Q ss_pred             ChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhh
Q 011995          386 HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE--ELDRQ  455 (473)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~--~L~~l  455 (473)
                      .............              +.+.   ....+.++.+||..||+.+|.+||++.++|.  .+..+
T Consensus       247 ~~~~qli~~lk~~--------------p~lp---i~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        247 NNFSQLISELKRG--------------PDLP---IKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             CcHHHHHHHHhcC--------------CCCC---cCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence            4333211110000              0000   1123578999999999999999999999994  44433

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.3e-38  Score=310.32  Aligned_cols=252  Identities=20%  Similarity=0.267  Sum_probs=197.5

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |+..+.||.|+||+||+|....+   .+.++++......  .......+.+|+++++.++|+||+.+++++..+  +..+
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~--~~~~   76 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRAT---GKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETK--DALC   76 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCC---CcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecC--CEEE
Confidence            56678999999999999986543   3445555443321  122345578899999999999999999888765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..+..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++...
T Consensus        77 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~ql~~~l~~lH~~~---iiH~dikp~Nili~~~~~~kl~Dfg~~~~~  152 (285)
T cd05632          77 LVLTIMNGGDLKFHIYNM-GNPGFEEERALFYAAEILCGLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAVKI  152 (285)
T ss_pred             EEEEeccCccHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEECCCCCEEEecCCcceec
Confidence            999999999999888643 2346999999999999999999999999   999999999999999999999999998655


Q ss_pred             CCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          335 PET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       335 ~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ... ......++..|+|||.+.+..++.++|+|||||++|||++|..||...........+....  ...          
T Consensus       153 ~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~--~~~----------  220 (285)
T cd05632         153 PEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRV--LET----------  220 (285)
T ss_pred             CCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhh--hcc----------
Confidence            332 2234567899999999998889999999999999999999999998765433222221100  000          


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~  451 (473)
                        ...++...+..+.+|+..||+.||++||+     +.++++.
T Consensus       221 --~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         221 --EEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             --ccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence              01123345677899999999999999999     6677764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.2e-39  Score=321.76  Aligned_cols=240  Identities=18%  Similarity=0.179  Sum_probs=188.4

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHH-HHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~-~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....   .++.+++|+.....  .......+..|.. +++.++||||+++++++..+  +..++||
T Consensus         1 ~~lG~G~~g~V~~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~--~~~~lv~   75 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKL---DGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTT--EKLYFVL   75 (325)
T ss_pred             CceeeCCCeEEEEEEECC---CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecC--CEEEEEE
Confidence            469999999999998543   34455666654321  2233455666665 46778999999999988765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|..++..   ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++..... 
T Consensus        76 e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~al~~lH~~g---ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~  149 (325)
T cd05604          76 DFVNGGELFFHLQR---ERSFPEPRARFYAAEIASALGYLHSIN---IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQ  149 (325)
T ss_pred             cCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEeecCCcccCCCC
Confidence            99999999988843   346899999999999999999999999   99999999999999999999999999875422 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                       .......+++.|+|||++.+..++.++|||||||++|||++|..||...........+...              ..  
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~--------------~~--  213 (325)
T cd05604         150 SDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHK--------------PL--  213 (325)
T ss_pred             CCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcC--------------Cc--
Confidence             2233456889999999999999999999999999999999999999876544432222100              00  


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIF  449 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil  449 (473)
                        .++...+..+.+++.+||+.||.+||++++.+
T Consensus       214 --~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         214 --VLRPGASLTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             --cCCCCCCHHHHHHHHHHhccCHHhcCCCCCCH
Confidence              01223457788999999999999999886433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.2e-38  Score=313.18  Aligned_cols=259  Identities=19%  Similarity=0.348  Sum_probs=201.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|.+..+.. ....+++++...........++.+|+.+++.++|+||++++|++..   ...
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~---~~~   83 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS---PTI   83 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC---CCc
Confidence            456777999999999999998754332 2233344443322233334578899999999999999999999864   346


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++++||+++|+|.+++...  ...+++..+..++.|++.||.|||+++   |+|+||||+|||++.++.+||+|||+++.
T Consensus        84 ~~v~e~~~~g~l~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dikp~Nill~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          84 QLVTQLMPHGCLLDYVHEH--KDNIGSQLLLNWCVQIAKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARL  158 (303)
T ss_pred             eeeehhcCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHhhcC---eeccccccceeeecCCCceEEcccccccc
Confidence            7999999999999998543  345899999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ......    ....++..|++||.+.+..++.++|||||||++|||++ |..||.+.........+....       .. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~-------~~-  230 (303)
T cd05110         159 LEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGE-------RL-  230 (303)
T ss_pred             ccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCC-------CC-
Confidence            643221    12234678999999988889999999999999999997 999997654433322221100       00 


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                               ..+..++..+.+++..||..+|++||++.++++.|.++...
T Consensus       231 ---------~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         231 ---------PQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             ---------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                     01223446789999999999999999999999999987543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1e-38  Score=308.71  Aligned_cols=259  Identities=18%  Similarity=0.302  Sum_probs=201.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe--eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS--TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .+|+....||+|+||.||+|+......  ..+.++++.............+.+|++++++++|+||+++++++.+.  +.
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~   82 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREA--EP   82 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCC--Cc
Confidence            468888999999999999999754332  22334444433222223457799999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCC------CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDG------PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~------~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                      .++||||+++|+|.+++......      ..+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.++|+
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~  159 (275)
T cd05046          83 HYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQREVKVS  159 (275)
T ss_pred             ceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC---cccCcCccceEEEeCCCcEEEc
Confidence            89999999999999999654321      26899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccc
Q 011995          327 GYGCAGHIPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       327 DFGla~~~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      |||++.......   .....++..|++||.+.+..++.++||||||+++|+|++ |..||...........+..      
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~------  233 (275)
T cd05046         160 LLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQA------  233 (275)
T ss_pred             ccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHc------
Confidence            999986543222   223355678999999988889999999999999999998 8889965443322211110      


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                                ..+....+..++..+.+++.+||+.||.+||++.++++.|.+
T Consensus       234 ----------~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         234 ----------GKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             ----------CCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence                      000001122345789999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.9e-39  Score=324.90  Aligned_cols=259  Identities=14%  Similarity=0.150  Sum_probs=199.9

Q ss_pred             HHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeee
Q 011995          168 DEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFH  245 (473)
Q Consensus       168 ~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~  245 (473)
                      .++....++|+..+.||+|+||.||++....+   .+.+++|+....  ........+.+|+.++..++||||+++++++
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~---~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~  112 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKST---RKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF  112 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCC---CcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            34445568999999999999999999986543   345556654421  1223345678899999999999999999988


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEE
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL  325 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl  325 (473)
                      ..+  ..+++||||+++|+|.+++..    ..++...+..++.||+.||+|||+++   |+||||||+|||++.++.+||
T Consensus       113 ~~~--~~~~lv~Ey~~gg~L~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NIll~~~~~ikL  183 (371)
T cd05622         113 QDD--RYLYMVMEYMPGGDLVNLMSN----YDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKL  183 (371)
T ss_pred             EcC--CEEEEEEcCCCCCcHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEECCCCCEEE
Confidence            765  789999999999999999843    24888999999999999999999999   999999999999999999999


Q ss_pred             eccCCCcccCCCC---ccCcccccccCChhhhhcC----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          326 SGYGCAGHIPETD---ISNSSVAAANLSVETLERG----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       326 ~DFGla~~~~~~~---~~~~~~t~~y~aPE~~~~~----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +|||++.......   .....+|+.|||||++.+.    .++.++|||||||++|||++|..||...........+....
T Consensus       184 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~  263 (371)
T cd05622         184 ADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHK  263 (371)
T ss_pred             EeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCC
Confidence            9999997664322   2345689999999999654    37899999999999999999999998765543322221100


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEEL  452 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~L  452 (473)
                      .              .+........+..+.++|..||..++.+  |+++.+|++..
T Consensus       264 ~--------------~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         264 N--------------SLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             C--------------cccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence            0              0000012245688999999999844433  78999988854

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=7.3e-39  Score=310.78  Aligned_cols=271  Identities=21%  Similarity=0.270  Sum_probs=204.6

Q ss_pred             ccccCcceeecCCceEEEEEECCC-CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDD-ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .|...+.||+|+||.||+|.+... ....+.+++++............|.+|+++++.++|+||+++++++...+....+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            466669999999999999987543 3344556666554332223467899999999999999999999998875557899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        85 lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRH--RDQINLKRLLLFSSQICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKVL  159 (284)
T ss_pred             EEEecCCCCCHHHHHHhC--ccccCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEccccccccc
Confidence            999999999999999643  235899999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCCcc-----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc--cccccc
Q 011995          335 PETDIS-----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL--ADDCRL  407 (473)
Q Consensus       335 ~~~~~~-----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~  407 (473)
                      ......     ....+..|++||.+.+..++.++|||||||++|||++|..|+.........    +..+..  .....+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~----~~~~~~~~~~~~~~  235 (284)
T cd05038         160 PEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLR----MIGIAQGQMIVTRL  235 (284)
T ss_pred             ccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcc----ccccccccccHHHH
Confidence            532111     123345699999998888999999999999999999999998653221100    000000  000000


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ...+........+..++.++.+++.+||+.+|.+|||+.||++.|+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         236 LELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            001111111112334457899999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=2.7e-38  Score=301.29  Aligned_cols=245  Identities=20%  Similarity=0.358  Sum_probs=194.0

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||.|+||.||+|...++    ..+++++............+.+|++++..++||||+++++++...  +..++||||+
T Consensus         1 ~~ig~g~~g~vy~~~~~~~----~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~lv~e~~   74 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDK----TPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQR--QPIYIVMELV   74 (250)
T ss_pred             CccCCCCCceEEEEEecCC----cEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecC--CccEEEEECC
Confidence            3689999999999986543    233444433322333445788999999999999999999998766  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS  340 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~  340 (473)
                      ++++|.+++...  ...+++..+..++.+++.+|.|||+++   ++|+||||+||+++.++.+||+|||++.........
T Consensus        75 ~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~  149 (250)
T cd05085          75 PGGDFLSFLRKK--KDELKTKQLVKFALDAAAGMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS  149 (250)
T ss_pred             CCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccChheEEEcCCCeEEECCCccceeccccccc
Confidence            999999998543  345899999999999999999999999   999999999999999999999999998754332211


Q ss_pred             ---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccccccC
Q 011995          341 ---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK  416 (473)
Q Consensus       341 ---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  416 (473)
                         ....+..|+|||++.+..++.++||||||+++|||++ |..||...........+..       .          ..
T Consensus       150 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~-------~----------~~  212 (250)
T cd05085         150 SSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEK-------G----------YR  212 (250)
T ss_pred             cCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHc-------C----------CC
Confidence               1233567999999998889999999999999999998 9999977654433222210       0          01


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       417 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ..++..++..+.+++.+||..+|++||++.++++.|.
T Consensus       213 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         213 MSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            1123345678999999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.1e-38  Score=310.59  Aligned_cols=267  Identities=17%  Similarity=0.205  Sum_probs=194.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhC---CCCCcccceeeeecC---
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASL---QHPNLCKLLGFHARD---  248 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l---~HpnIv~l~g~~~~~---  248 (473)
                      +|+..+.||+|+||.||+|...++   .+.+++|....... ......+.+|++++..+   +||||+++++++...   
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~   77 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHS---GHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTD   77 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCC---CcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCC
Confidence            477889999999999999986543   34555555544322 22234566777777665   799999999987642   


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      .....++||||+. ++|.+++... ....+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+||
T Consensus        78 ~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~kl~df  152 (288)
T cd07863          78 RETKVTLVFEHVD-QDLRTYLDKV-PPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADF  152 (288)
T ss_pred             CCceEEEEEcccc-cCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECcc
Confidence            2256899999997 4888888543 2345899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hhccccccccc-
Q 011995          329 GCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLADDC-  405 (473)
Q Consensus       329 Gla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~~~~~~~-  405 (473)
                      |++....... .....++..|+|||++.+..++.++|||||||++|||++|.+||...........+ .+......... 
T Consensus       153 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  232 (288)
T cd07863         153 GLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWP  232 (288)
T ss_pred             CccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCc
Confidence            9998664332 23446788999999999888999999999999999999999999776544332211 11100000000 


Q ss_pred             ---cc-ccccccccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 ---RL-SLIMDPQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ---~~-~~~~~~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         .. .....+...   ..+...++..+.+++.+||+.||.+|||+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         233 RDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             ccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence               00 000000000   0111245677899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=9.8e-39  Score=321.49  Aligned_cols=267  Identities=15%  Similarity=0.194  Sum_probs=197.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC-
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS-  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~-  250 (473)
                      ..++|+..+.||+|+||.||++....   .++.+++|+.... ........+.+|+.+++.++||||+++++++...+. 
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   95 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTV---LGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSL   95 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcC---CCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCc
Confidence            45789999999999999999998533   3455556655432 233445678899999999999999999998865421 


Q ss_pred             ---CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          251 ---DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       251 ---~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                         ..+|+||||+.+ +|.+.+..     .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|
T Consensus        96 ~~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~~~---ivHrDlkp~NIl~~~~~~~kl~D  166 (359)
T cd07876          96 EEFQDVYLVMELMDA-NLCQVIHM-----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILD  166 (359)
T ss_pred             cccceeEEEEeCCCc-CHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEec
Confidence               357999999965 67666632     3788999999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--cc-----
Q 011995          328 YGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--RP-----  399 (473)
Q Consensus       328 FGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--~~-----  399 (473)
                      ||++...... ......+|..|+|||.+.+..++.++|||||||++|||++|+.||.+.+.......+...  .+     
T Consensus       167 fg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~  246 (359)
T cd07876         167 FGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFM  246 (359)
T ss_pred             CCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHH
Confidence            9999765333 223457789999999999989999999999999999999999999876543221111000  00     


Q ss_pred             ---------ccccccc-----ccccccc-cc--CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 ---------FLADDCR-----LSLIMDP-QL--KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ---------~~~~~~~-----~~~~~~~-~l--~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                               +......     ....... ..  ........+..+.+|+.+||+.||++|||+.|+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         247 NRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             HHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence                     0000000     0000000 00  000112235678999999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=8.4e-39  Score=308.01  Aligned_cols=254  Identities=21%  Similarity=0.266  Sum_probs=196.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||.||+|....+   .+.+++++.... .......+.+|+.++..++|+||+++++++...  +..
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~---~~~~aik~~~~~-~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~--~~~   81 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHT---GELAAVKIIKLE-PGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSR--EKL   81 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCC---CeEEEEEEEecC-ccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeC--CEE
Confidence            35788899999999999999986443   334445554433 223345678999999999999999999998766  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++..   ...+++..+..++.|++.||.|||+.+   |+||||+|+||+++.++.++|+|||++..
T Consensus        82 ~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~  155 (267)
T cd06646          82 WICMEYCGGGSLQDIYHV---TGPLSELQIAYVCRETLQGLAYLHSKG---KMHRDIKGANILLTDNGDVKLADFGVAAK  155 (267)
T ss_pred             EEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEECcCcccee
Confidence            999999999999998853   246899999999999999999999998   99999999999999999999999999876


Q ss_pred             cCCCC--ccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .....  .....++..|+|||.+.   ...++.++|||||||++|||++|+.||............  ..         .
T Consensus       156 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~--~~---------~  224 (267)
T cd06646         156 ITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLM--SK---------S  224 (267)
T ss_pred             ecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheee--ec---------C
Confidence            54322  22345778999999984   344788999999999999999999999654332211100  00         0


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                      ....+...  .....+..+.+++.+||..||++||++++|++.|
T Consensus       225 ~~~~~~~~--~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         225 NFQPPKLK--DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             CCCCCCCc--cccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            00011111  1223457899999999999999999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=8e-39  Score=323.70  Aligned_cols=266  Identities=17%  Similarity=0.246  Sum_probs=196.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC---C
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS---D  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~---~  251 (473)
                      +|+..+.||+|+||.||++....   .++.+++|+.... ......+.+.+|+++++.++|+||+++++++.....   .
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   77 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPR---DGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFE   77 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECC---CCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccc
Confidence            47788999999999999998543   3344455544322 122345678899999999999999999999876521   2


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..|+||||+. ++|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~a  150 (372)
T cd07853          78 EIYVVTELMQ-SDLHKIIVS---PQPLSSDHVKVFLYQILRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLA  150 (372)
T ss_pred             eEEEEeeccc-cCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHHEEECCCCCEEeccccce
Confidence            6899999996 588887743   346899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC---ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc--ccccc-
Q 011995          332 GHIPETD---ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP--FLADD-  404 (473)
Q Consensus       332 ~~~~~~~---~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~--~~~~~-  404 (473)
                      .......   .....++..|+|||.+.+. .++.++|||||||++|||++|+.||...........+.....  ...+. 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~  230 (372)
T cd07853         151 RVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMR  230 (372)
T ss_pred             eecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence            7653322   2234568899999999774 478999999999999999999999987765544333221100  00000 


Q ss_pred             ----cccccc----ccc-ccC--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 ----CRLSLI----MDP-QLK--GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ----~~~~~~----~~~-~l~--~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          .....+    ..+ ...  ..+....+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         231 SACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                000000    000 000  01122346788999999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=8e-39  Score=321.62  Aligned_cols=268  Identities=15%  Similarity=0.198  Sum_probs=199.0

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC-
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG-  249 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~-  249 (473)
                      ...++|+..+.||+|+||.||++...   ...+.+++|+..... .......+.+|+.+++.++||||+++++++.... 
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   90 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDA---VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKS   90 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEec---CCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccc
Confidence            45678999999999999999999843   344555565544322 3334567889999999999999999999876432 


Q ss_pred             ---CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 ---SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                         ....++||||+++ +|.+.+..     .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+
T Consensus        91 ~~~~~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDikp~Nill~~~~~~kl~  161 (355)
T cd07874          91 LEEFQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKIL  161 (355)
T ss_pred             ccccceeEEEhhhhcc-cHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEECCCCCEEEe
Confidence               1357999999965 67776632     4788999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--------
Q 011995          327 GYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--------  397 (473)
Q Consensus       327 DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--------  397 (473)
                      |||+++...... .....+|..|+|||++.+..++.++|||||||++|||++|+.||.+.........+...        
T Consensus       162 Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  241 (355)
T cd07874         162 DFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEF  241 (355)
T ss_pred             eCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            999998654332 23456789999999999888999999999999999999999999876543322111000        


Q ss_pred             --------cccccccccccccccccc--------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          398 --------RPFLADDCRLSLIMDPQL--------KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       398 --------~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              ..+.........+..+..        ........+..+.+|+.+||+.||++|||+.|+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         242 MKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence                    000000000000000000        001122345678999999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=1.2e-38  Score=307.17  Aligned_cols=252  Identities=23%  Similarity=0.387  Sum_probs=196.7

Q ss_pred             cceeecCCceEEEEEECCCC---eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDA---STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|+..+..   ...+.++++.............+.+|+.+++.++||||+++++++...  +..++||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~~v~   78 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLN--EPQYIIM   78 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCC--CCeEEEE
Confidence            46999999999999875432   112333444333222234567889999999999999999999998765  6799999


Q ss_pred             EeccCCChhhhhhcCC----CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-----cEEEecc
Q 011995          258 ERLFHGSLDRLIYGRS----DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-----SAKLSGY  328 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-----~vkl~DF  328 (473)
                      ||+++++|.+++....    ....+++..++.++.|++.||.|||+.+   ++|+||||+||+++.++     .++|+||
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~~~~~l~df  155 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH---FIHRDLAARNCLVSEKGYDADRVVKIGDF  155 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC---cccCCCChheEEEecCCCCCCcceEECCc
Confidence            9999999999996432    2245789999999999999999999998   99999999999999877     8999999


Q ss_pred             CCCcccCCCCcc----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccc
Q 011995          329 GCAGHIPETDIS----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       329 Gla~~~~~~~~~----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |++.........    ....+..|+|||++.++.++.++|||||||++|||++ |..||......+....+..       
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~-------  228 (269)
T cd05044         156 GLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTA-------  228 (269)
T ss_pred             ccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhc-------
Confidence            998765433221    2234578999999999999999999999999999998 9999976554332222110       


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      ..          ....+...+..+.+++.+||..+|.+||++.+|++.|++
T Consensus       229 ~~----------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         229 GG----------RLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             CC----------ccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            00          011233456789999999999999999999999999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.6e-39  Score=325.76  Aligned_cols=250  Identities=16%  Similarity=0.224  Sum_probs=195.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||++.....   .+.+++|+.+...  .......+.+|+.++..++|+||+++++.+.+.  +.
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~--~~   75 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDT---GHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDK--RN   75 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCC---CCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC--CE
Confidence            4688889999999999999986543   3455566554321  233456788899999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +||||||+++|+|.+++..   ...+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~E~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~~L~~lH~~g---ivHrDLkp~NIli~~~~~vkL~DfG~~~  149 (360)
T cd05627          76 LYLIMEFLPGGDMMTLLMK---KDTLSEEATQFYIAETVLAIDAIHQLG---FIHRDIKPDNLLLDAKGHVKLSDFGLCT  149 (360)
T ss_pred             EEEEEeCCCCccHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEeeccCCc
Confidence            9999999999999999853   346899999999999999999999999   9999999999999999999999999986


Q ss_pred             ccCCCC-------------------------------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHH
Q 011995          333 HIPETD-------------------------------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLEL  375 (473)
Q Consensus       333 ~~~~~~-------------------------------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~el  375 (473)
                      .+....                                     .....||+.|+|||++.+..++.++|||||||++|||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel  229 (360)
T cd05627         150 GLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEM  229 (360)
T ss_pred             ccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeec
Confidence            442110                                     1134688999999999999999999999999999999


Q ss_pred             HcCCCCCCCCChHHHHhHhh-hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC---HHHHHHH
Q 011995          376 LTGRKNLDSRHPKEERNLVK-WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---MRSIFEE  451 (473)
Q Consensus       376 ltG~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt---~~eil~~  451 (473)
                      ++|..||...........+. |....             ....  ....+.++.+++.+|+ .||.+|++   +.++++.
T Consensus       230 ~tG~~Pf~~~~~~~~~~~i~~~~~~~-------------~~p~--~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~h  293 (360)
T cd05627         230 LIGYPPFCSETPQETYRKVMNWKETL-------------VFPP--EVPISEKAKDLILRFC-TDSENRIGSNGVEEIKSH  293 (360)
T ss_pred             ccCCCCCCCCCHHHHHHHHHcCCCce-------------ecCC--CCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcC
Confidence            99999998766544332221 11000             0000  1124578889998876 49999985   6666654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-39  Score=323.01  Aligned_cols=262  Identities=20%  Similarity=0.323  Sum_probs=216.8

Q ss_pred             CcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcc
Q 011995          162 LRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLC  239 (473)
Q Consensus       162 ~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv  239 (473)
                      ...++.++|...       ++||+|.||+|++|.|..  ..++.+.|+||.+..  -......|++|+.+|.+|+|+|+|
T Consensus       104 kclIpee~i~l~-------e~LG~GsFgvV~rg~Wt~--psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hli  174 (1039)
T KOG0199|consen  104 KCLIPEEQIKLY-------ELLGEGSFGVVKRGTWTQ--PSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLI  174 (1039)
T ss_pred             ceeccHHHHHHH-------HHhcCcceeeEeeccccC--CCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCccee
Confidence            344677777665       899999999999999976  344555566665553  334678999999999999999999


Q ss_pred             cceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       240 ~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      +|||+..+   ...+||||+++.|||.+.|+. .....|-......++.|||.||.||..++   +|||||...|+||..
T Consensus       175 RLyGvVl~---qp~mMV~ELaplGSLldrLrk-a~~~~llv~~Lcdya~QiA~aM~YLeskr---lvHRDLAARNlllas  247 (1039)
T KOG0199|consen  175 RLYGVVLD---QPAMMVFELAPLGSLLDRLRK-AKKAILLVSRLCDYAMQIAKAMQYLESKR---LVHRDLAARNLLLAS  247 (1039)
T ss_pred             EEeeeecc---chhhHHhhhcccchHHHHHhh-ccccceeHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhhhheecc
Confidence            99999875   568899999999999999987 34567888899999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCCcc-----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhH
Q 011995          320 DFSAKLSGYGCAGHIPETDIS-----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNL  393 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~~~-----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~  393 (473)
                      ...|||+||||.+-+..++..     .......|.|||.+....++.++|||+|||++|||+| |+.||.+.........
T Consensus       248 prtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~  327 (1039)
T KOG0199|consen  248 PRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKN  327 (1039)
T ss_pred             cceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHh
Confidence            999999999999988654321     2234578999999999999999999999999999998 8999998877665544


Q ss_pred             hhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          394 VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      ++       ++.++.          -+..+++++++++..||..+|++|||+..|.+.+-..+
T Consensus       328 iD-------~~erLp----------RPk~csedIY~imk~cWah~paDRptFsair~~~~l~e  373 (1039)
T KOG0199|consen  328 ID-------AGERLP----------RPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVLAE  373 (1039)
T ss_pred             cc-------ccccCC----------CCCCChHHHHHHHHHhccCCccccccHHHHHHhHHHHh
Confidence            43       111221          26788999999999999999999999999986655444

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.2e-38  Score=312.79  Aligned_cols=265  Identities=17%  Similarity=0.229  Sum_probs=198.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||+|....   ....++++.............+.+|+.+++.++|+||+++++++..+  +..+
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~--~~~~   80 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKL---TDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE--KSLT   80 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcC---CCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecC--CeEE
Confidence            568888999999999999998543   23445555555443334445678999999999999999999998766  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+. ++|.+++...  ...+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.+||+|||++...
T Consensus        81 lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  154 (301)
T cd07873          81 LVFEYLD-KDLKQYLDDC--GNSINMHNVKLFLFQLLRGLNYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAK  154 (301)
T ss_pred             EEEeccc-cCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHHHEEECCCCcEEECcCcchhcc
Confidence            9999996 5898888543  346889999999999999999999999   999999999999999999999999998754


Q ss_pred             CCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc------
Q 011995          335 PET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC------  405 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~------  405 (473)
                      ...  ......++..|+|||.+.+. .++.++|||||||++|||++|++||......+....+...........      
T Consensus       155 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (301)
T cd07873         155 SIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS  234 (301)
T ss_pred             CCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhc
Confidence            322  22334568899999998654 478899999999999999999999987665443322211100000000      


Q ss_pred             --ccccccccccCCC----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 --RLSLIMDPQLKGR----FPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 --~~~~~~~~~l~~~----~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                        .......+.....    ....++..+.+||.+||+.||.+|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         235 NEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence              0000000111111    11235678899999999999999999999987

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-40  Score=328.15  Aligned_cols=250  Identities=19%  Similarity=0.294  Sum_probs=202.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      -|.+...||.|+||.||+|...+..    .++.+...-..+....+.|+-||+||..+.||+||+|++.|+.+  +.+||
T Consensus        33 ~WeIiGELGDGAFGKVyKA~nket~----~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~e--nkLwi  106 (1187)
T KOG0579|consen   33 HWEIIGELGDGAFGKVYKAVNKETK----LLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFE--NKLWI  106 (1187)
T ss_pred             HHHHHhhhcCccchhhhhhhcccch----hhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhcc--CceEE
Confidence            3666789999999999999854322    22222222223556678899999999999999999999988776  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      +.|||.||.++.++..  -+..|.+.++..+++|++.||.|||+++   |||||||..|||++-+|.++|+|||++....
T Consensus       107 liEFC~GGAVDaimlE--L~r~LtE~QIqvvc~q~ldALn~LHs~~---iIHRDLKAGNiL~TldGdirLADFGVSAKn~  181 (1187)
T KOG0579|consen  107 LIEFCGGGAVDAIMLE--LGRVLTEDQIQVVCYQVLDALNWLHSQN---IIHRDLKAGNILLTLDGDIRLADFGVSAKNK  181 (1187)
T ss_pred             EEeecCCchHhHHHHH--hccccchHHHHHHHHHHHHHHHHHhhcc---hhhhhccccceEEEecCcEeeecccccccch
Confidence            9999999999988854  3567999999999999999999999999   9999999999999999999999999875443


Q ss_pred             CC--CccCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          336 ET--DISNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       336 ~~--~~~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ..  ....+.||++|||||++..     .+|++++||||||++|.||..+.+|-...++......+....|         
T Consensus       182 ~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSeP---------  252 (1187)
T KOG0579|consen  182 STRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEP---------  252 (1187)
T ss_pred             hHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCC---------
Confidence            22  3457789999999998743     5699999999999999999999999887666554333322211         


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          |.+.  -|...+..+.+|+.+||.+||..||++.++++.
T Consensus       253 ----PTLl--qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  253 ----PTLL--QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             ----Cccc--CcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence                1111  156778899999999999999999999998864

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=1.9e-38  Score=305.58  Aligned_cols=250  Identities=18%  Similarity=0.278  Sum_probs=195.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC----CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .+|...+.||+|+||.||+|...+.   .+.+++++.....    .......+.+|+.+++.++|+||+++++++.+...
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   78 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDT---GRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAE   78 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCC---CcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCC
Confidence            4789999999999999999985433   3445555544332    12234568899999999999999999998876544


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++++||+++++|.+++..   ...+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.+||+|||+
T Consensus        79 ~~~~l~~e~~~~~~L~~~l~~---~~~l~~~~~~~~~~qi~~~l~~LH~~~---i~H~~l~p~nil~~~~~~~~l~dfg~  152 (266)
T cd06651          79 KTLTIFMEYMPGGSVKDQLKA---YGALTESVTRKYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGA  152 (266)
T ss_pred             CEEEEEEeCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCCC
Confidence            678999999999999999854   235889999999999999999999998   99999999999999999999999999


Q ss_pred             CcccCCC-----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPET-----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +......     ......++..|+|||.+.+..++.++|||||||++|||++|+.||.............          
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~----------  222 (266)
T cd06651         153 SKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIA----------  222 (266)
T ss_pred             ccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHh----------
Confidence            8754321     1123356789999999988889999999999999999999999997654322211110          


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                            .......++......+.+++ .||..+|++||+++||++
T Consensus       223 ------~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         223 ------TQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             ------cCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence                  00011223445567788888 677789999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=4.8e-39  Score=318.76  Aligned_cols=237  Identities=18%  Similarity=0.208  Sum_probs=185.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHH-HHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~-~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|+...+   ...+++|+.....  .......+..|+. +++.++||||+++++++.+.  +..|+||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~--~~~~lv~   75 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSD---GSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTA--EKLYFVL   75 (321)
T ss_pred             CeeeeCCCEEEEEEEECCC---CCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcC--CEEEEEE
Confidence            4699999999999986543   3445555554321  2223345555654 67889999999999988765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC-
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE-  336 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~-  336 (473)
                      ||+++|+|..++..   ...+++..+..++.||+.||.|||+.+   |+||||||+||||+.++.+||+|||++..... 
T Consensus        76 e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  149 (321)
T cd05603          76 DYVNGGELFFHLQR---ERCFLEPRARFYAAEVASAIGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEP  149 (321)
T ss_pred             cCCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEccCCCCccCCCC
Confidence            99999999988843   346888999999999999999999999   99999999999999999999999999875322 


Q ss_pred             -CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 -TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 -~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                       .......+++.|+|||.+.+..++.++|||||||++|||++|..||...+.......+...                . 
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~----------------~-  212 (321)
T cd05603         150 EETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHK----------------P-  212 (321)
T ss_pred             CCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcC----------------C-
Confidence             2223446889999999999888999999999999999999999999876543322221100                0 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMR  446 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  446 (473)
                       ..++...+..+.+++.+||+.||.+|+++.
T Consensus       213 -~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         213 -LQLPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             -CCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence             012334567889999999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.5e-38  Score=319.81  Aligned_cols=261  Identities=15%  Similarity=0.220  Sum_probs=188.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ...+|.+.+.||+|+||.||+|......   ..+++|+..       ......|+.++++++|+||+++++++...  ..
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~---~~valK~~~-------~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~  131 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQP---DPVVLKIGQ-------KGTTLIEAMLLQNVNHPSVIRMKDTLVSG--AI  131 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCC---ceEEEEeCC-------ccccHHHHHHHHhCCCCCCcChhheEEeC--Ce
Confidence            4467999999999999999999965442   333344321       12345799999999999999999999876  77


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+ .++|.+++..  ....+++..+..|+.||+.||.|||+++   ||||||||+|||++.++.+||+|||+++
T Consensus       132 ~~lv~e~~-~~~l~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~  205 (357)
T PHA03209        132 TCMVLPHY-SSDLYTYLTK--RSRPLPIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVDQVCIGDLGAAQ  205 (357)
T ss_pred             eEEEEEcc-CCcHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEecCcccc
Confidence            89999999 4688888854  3456899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCC-CCCChHHH-------HhHhhhccccccc
Q 011995          333 HIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNL-DSRHPKEE-------RNLVKWSRPFLAD  403 (473)
Q Consensus       333 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~-~~~~~~~~-------~~~~~~~~~~~~~  403 (473)
                      ..... ......+|..|+|||++.+..++.++|||||||++|||+++..++ ........       ..+..........
T Consensus       206 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~  285 (357)
T PHA03209        206 FPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVH  285 (357)
T ss_pred             ccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccC
Confidence            54322 223456889999999999989999999999999999999865544 33211100       0000000000000


Q ss_pred             cccc---------ccccc--cccCC---CC----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRL---------SLIMD--PQLKG---RF----PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~---------~~~~~--~~l~~---~~----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+         ....+  ...+.   .+    ..+.+.++.+||.+||+.||.+|||+.|+++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~h  351 (357)
T PHA03209        286 PEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNY  351 (357)
T ss_pred             hhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcC
Confidence            0000         00000  00000   00    01334567789999999999999999999863

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.2e-39  Score=320.04  Aligned_cols=243  Identities=18%  Similarity=0.263  Sum_probs=188.3

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|....+   .+.+++|+.....  .......+.+|+.++.++ +|+||+.+++++...  +.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~~lv~   75 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKN---DQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTT--SRLFLVI   75 (327)
T ss_pred             CeeeeCCCeEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeC--CEEEEEE
Confidence            4699999999999986544   3445566555331  233456688999999888 699999999988765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC--
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP--  335 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~--  335 (473)
                      ||+++|+|..++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++....  
T Consensus        76 e~~~~~~L~~~~~~---~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~  149 (327)
T cd05617          76 EYVNGGDLMFHMQR---QRKLPEEHARFYAAEICIALNFLHERG---IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGP  149 (327)
T ss_pred             eCCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEeCCCCEEEeccccceeccCC
Confidence            99999999988843   346999999999999999999999999   9999999999999999999999999987532  


Q ss_pred             CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          336 ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       336 ~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                      ........+|+.|+|||++.+..++.++|||||||++|||++|..||.............+.         ...+...  
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~---------~~~~~~~--  218 (327)
T cd05617         150 GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYL---------FQVILEK--  218 (327)
T ss_pred             CCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHH---------HHHHHhC--
Confidence            22233457899999999999999999999999999999999999999643221110000000         0000000  


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                      ...++...+..+.+++.+||..||.+|+++
T Consensus       219 ~~~~p~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         219 PIRIPRFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             CCCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence            012344566788999999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=8.7e-39  Score=311.51  Aligned_cols=251  Identities=20%  Similarity=0.279  Sum_probs=196.7

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |+..+.||+|+||.||++.....   .+.++++......  .......+.+|+.+++.++|+||+.+++.+.+.  +..+
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~--~~~~   76 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRAT---GKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETK--DALC   76 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCC---CceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecC--CEEE
Confidence            66778999999999999986543   3455555443321  222345678899999999999999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..+..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++...
T Consensus        77 lv~e~~~g~~L~~~l~~~-~~~~l~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~  152 (285)
T cd05630          77 LVLTLMNGGDLKFHIYHM-GEAGFEEGRAVFYAAEICCGLEDLHQER---IVYRDLKPENILLDDHGHIRISDLGLAVHV  152 (285)
T ss_pred             EEEEecCCCcHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeccceeec
Confidence            999999999999988543 2345899999999999999999999998   999999999999999999999999998765


Q ss_pred             CCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          335 PETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       335 ~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      .... .....++..|+|||++.+..++.++|||||||++|||++|..||..............   ...           
T Consensus       153 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~---~~~-----------  218 (285)
T cd05630         153 PEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVER---LVK-----------  218 (285)
T ss_pred             CCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHh---hhh-----------
Confidence            4322 2334678999999999988999999999999999999999999976432211111100   000           


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFE  450 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~  450 (473)
                      .....++...+.++.+|+.+||+.||++|||     +.|+++
T Consensus       219 ~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         219 EVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             hhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence            0001123345678899999999999999999     889887

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.6e-38  Score=311.29  Aligned_cols=249  Identities=21%  Similarity=0.322  Sum_probs=197.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|+..+.||+|+||.||+|....+   ...++++....... .....+.+|+.+++.++|+||+++++++...  ...|
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~---~~~v~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~--~~~~   93 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVAT---GQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVG--DELW   93 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCC---CcEEEEEEEecCCc-chHHHHHHHHHHHHhCCCCCEeeEEEEEEeC--CEEE
Confidence            4688889999999999999985432   33444554443322 2346788999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++..    ..+++..+..++.|++.||+|||+.+   |+|+||||+|||++.++.++|+|||++...
T Consensus        94 lv~e~~~~~~L~~~~~~----~~~~~~~~~~i~~ql~~aL~~LH~~g---i~H~dLkp~Nill~~~~~~kl~dfg~~~~~  166 (296)
T cd06654          94 VVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (296)
T ss_pred             EeecccCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEECccccchhc
Confidence            99999999999999843    34889999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ....  .....++..|+|||.+.+..++.++|||||||++|+|++|..||..........  .+..    ..       .
T Consensus       167 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~--~~~~----~~-------~  233 (296)
T cd06654         167 TPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY--LIAT----NG-------T  233 (296)
T ss_pred             cccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHH--HHhc----CC-------C
Confidence            3322  223467789999999988889999999999999999999999997655432211  1100    00       0


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +.+  ..+......+.+++.+||..||++||++.+|++.
T Consensus       234 ~~~--~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         234 PEL--QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             CCC--CCccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence            000  1133456778999999999999999999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.1e-38  Score=303.44  Aligned_cols=244  Identities=20%  Similarity=0.379  Sum_probs=188.3

Q ss_pred             cceeecCCceEEEEEECCCCe-----eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGDDAS-----TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +.||+|+||.||+|.+.+...     ......++++...........+.+|+.+++.++|+||+++++++..   ...++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~l   77 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR---DENIM   77 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec---CCcEE
Confidence            468999999999999765431     1112223333333222236788999999999999999999999876   45789


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-------cEEEecc
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-------SAKLSGY  328 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-------~vkl~DF  328 (473)
                      ||||+++|+|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++       .+||+||
T Consensus        78 v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dlkp~Nill~~~~~~~~~~~~~kl~Df  152 (259)
T cd05037          78 VEEYVKFGPLDVFLHRE--KNNVSLHWKLDVAKQLASALHYLEDKK---LVHGNVCGKNILVARYGLNEGYVPFIKLSDP  152 (259)
T ss_pred             EEEcCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhhCC---eecccCccceEEEecCccccCCceeEEeCCC
Confidence            99999999999999643  226899999999999999999999998   99999999999999887       7999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhcC--CCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccc
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLERG--LLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~~--~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      |++.....  .....++..|+|||++.+.  .++.++|||||||++|||++ |..||.............+..       
T Consensus       153 g~a~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~-------  223 (259)
T cd05037         153 GIPITVLS--REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQH-------  223 (259)
T ss_pred             Cccccccc--ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCC-------
Confidence            99876543  2233456789999999876  68999999999999999999 577886654322111111000       


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                                  ..+......+.+++.+||..+|.+|||+.+|++.|+
T Consensus       224 ------------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         224 ------------RLPMPDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             ------------CCCCCCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                        001111278899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2e-38  Score=305.16  Aligned_cols=245  Identities=20%  Similarity=0.360  Sum_probs=186.9

Q ss_pred             cceeecCCceEEEEEECCCCe-------eeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          181 RCISEGLSSVMYRASFGDDAS-------TSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +.||+|+||.||+|++.....       ..+.+.++++.+.. .......+.+|+.++..++||||+++++++..+  ..
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~--~~   78 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRD--VE   78 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecC--CC
Confidence            368999999999998643221       12223344443332 223345788899999999999999999998765  67


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc-------EEE
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS-------AKL  325 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~-------vkl  325 (473)
                      .++||||+++|+|..++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.       +++
T Consensus        79 ~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~~~~~~~~~l  153 (262)
T cd05077          79 NIMVEEFVEFGPLDLFMHRK--SDVLTTPWKFKVAKQLASALSYLEDKD---LVHGNVCTKNILLAREGIDGECGPFIKL  153 (262)
T ss_pred             CEEEEecccCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHhhhCC---eECCCCCcccEEEecCCccCCCCceeEe
Confidence            89999999999999888542  346899999999999999999999999   999999999999987654       899


Q ss_pred             eccCCCcccCCCCccCcccccccCChhhhh-cCCCCCcCCchHHHHHHHHHH-cCCCCCCCCChHHHHhHhhhccccccc
Q 011995          326 SGYGCAGHIPETDISNSSVAAANLSVETLE-RGLLTPKSNVWSFGIVLLELL-TGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       326 ~DFGla~~~~~~~~~~~~~t~~y~aPE~~~-~~~~s~~sDvwSlGvvl~ell-tG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      +|||++......  ....++..|+|||.+. +..++.++|||||||++|||+ +|..||......+......       .
T Consensus       154 ~d~g~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~-------~  224 (262)
T cd05077         154 SDPGIPITVLSR--QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYE-------G  224 (262)
T ss_pred             CCCCCCccccCc--ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHh-------c
Confidence            999998655322  2345678899999986 456899999999999999997 6888887654332211110       0


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ...            .......++.+|+.+||+.||.+||++.+|++.|+
T Consensus       225 ~~~------------~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~~  262 (262)
T cd05077         225 QCM------------LVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDIN  262 (262)
T ss_pred             Ccc------------CCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhcC
Confidence            000            01122467899999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=4.1e-38  Score=302.23  Aligned_cols=251  Identities=24%  Similarity=0.427  Sum_probs=199.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||++.+.++..      ++++...........+.+|+++++.++|+||+++++++..   ...+
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~------~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~---~~~~   76 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTK------VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK---EPIY   76 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCcc------EEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC---CCeE
Confidence            568888999999999999998654332      3333333333445778999999999999999999998765   5689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++...
T Consensus        77 ~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  152 (260)
T cd05073          77 IITEFMAKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVI  152 (260)
T ss_pred             EEEEeCCCCcHHHHHHhC-CccccCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCCcceeec
Confidence            999999999999999653 3456899999999999999999999998   999999999999999999999999998765


Q ss_pred             CCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ......   ...++..|++||++....++.++|||||||++|+|++ |..||...........+...       ...   
T Consensus       153 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~-------~~~---  222 (260)
T cd05073         153 EDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG-------YRM---  222 (260)
T ss_pred             cCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCC-------CCC---
Confidence            432221   2234567999999988889999999999999999998 99999875543322221110       000   


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                             ..+...+.++.+++.+||+.+|++||++.++++.|+.+
T Consensus       223 -------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~~  260 (260)
T cd05073         223 -------PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF  260 (260)
T ss_pred             -------CCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhcC
Confidence                   11233457899999999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.8e-38  Score=313.89  Aligned_cols=198  Identities=17%  Similarity=0.223  Sum_probs=158.4

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      ++.||+|+||+||+|...+.. ..+.++++.....   .....+.+|+.+|++++||||+++++++........++||||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~-~~~~~aiK~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGK-DDRDYALKQIEGT---GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY   81 (317)
T ss_pred             ccccccCCCeEEEEEEEccCC-CCceEEEEEECCC---CCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEec
Confidence            368999999999999865432 2344445544322   223567899999999999999999998876555778999999


Q ss_pred             ccCCChhhhhhcCC------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee----CCCCcEEEeccC
Q 011995          260 LFHGSLDRLIYGRS------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI----DKDFSAKLSGYG  329 (473)
Q Consensus       260 ~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl----~~~~~vkl~DFG  329 (473)
                      +. ++|.+++....      ....+++..+..++.||+.||.|||+++   |+||||||+|||+    +.++.+||+|||
T Consensus        82 ~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivHrDlkp~Nil~~~~~~~~~~~kl~DfG  157 (317)
T cd07868          82 AE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMG  157 (317)
T ss_pred             cC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEecCCCCcCcEEEeecC
Confidence            85 58887774221      1235899999999999999999999999   9999999999999    456889999999


Q ss_pred             CCcccCCC-----CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCC
Q 011995          330 CAGHIPET-----DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSR  385 (473)
Q Consensus       330 la~~~~~~-----~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~  385 (473)
                      +++.....     ......+|+.|+|||++.+. .++.++|||||||++|||++|++||...
T Consensus       158 ~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         158 FARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             ceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            99766432     22345678999999999764 5899999999999999999999999654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.3e-38  Score=309.42  Aligned_cols=265  Identities=18%  Similarity=0.229  Sum_probs=196.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|++|.||+|+...+   ...+++++..... .......+.+|+.+++.++||||+++++++..+  +..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKT---GQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQE--SRLY   75 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCC---CcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeC--CeEE
Confidence            477789999999999999986543   3345555544432 223346788999999999999999999999865  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+. ++|.+++........+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.+||+|||++...
T Consensus        76 ~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  151 (285)
T cd07861          76 LIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR---VLHRDLKPQNLLIDNKGVIKLADFGLARAF  151 (285)
T ss_pred             EEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEEcCCCcEEECcccceeec
Confidence            9999996 689888865444467999999999999999999999999   999999999999999999999999998755


Q ss_pred             CCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-h-hcccc------ccc
Q 011995          335 PET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-K-WSRPF------LAD  403 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~-~~~~~------~~~  403 (473)
                      ...  ......+++.|+|||.+.+. .++.++|||||||++|||++|++||............ . +..+.      ...
T Consensus       152 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (285)
T cd07861         152 GIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTS  231 (285)
T ss_pred             CCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchh
Confidence            322  12333567899999998654 4789999999999999999999999876543322111 0 00000      000


Q ss_pred             ccccc----cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCRLS----LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~~~----~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .....    ........ ......+.++.++|.+||+.||.+|||+.+|++
T Consensus       232 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         232 LPDYKNTFPKWKKGSLR-SAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             hHHHHhhccccCcchhH-HhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            00000    00000000 011235678899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-38  Score=306.10  Aligned_cols=248  Identities=23%  Similarity=0.362  Sum_probs=201.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||.|+||.||+|....+   ...+++++............+.+|+++++.++|+||+++++++.++  ...+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRT---NQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKG--SKLW   75 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCC---CeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEEC--CeEE
Confidence            3678889999999999999986543   3455566655544445567789999999999999999999998766  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+++++|.+++...    .+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++...
T Consensus        76 ~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  148 (274)
T cd06609          76 IIMEYCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEEG---KIHRDIKAANILLSEEGDVKLADFGVSGQL  148 (274)
T ss_pred             EEEEeeCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEcccccceee
Confidence            999999999999998532    6899999999999999999999999   999999999999999999999999999776


Q ss_pred             CCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...  ......++..|++||.+.+..++.++|||||||++|||++|..||...........+...             ..
T Consensus       149 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~-------------~~  215 (274)
T cd06609         149 TSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKN-------------NP  215 (274)
T ss_pred             cccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhc-------------CC
Confidence            543  223446678899999999888999999999999999999999999765533222111100             00


Q ss_pred             cccCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLK-AARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~-~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +.+    +.. .+.++.+++.+||..||++|||++++++.
T Consensus       216 ~~~----~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         216 PSL----EGNKFSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             CCC----cccccCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            111    111 55778999999999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-39  Score=323.09  Aligned_cols=254  Identities=18%  Similarity=0.331  Sum_probs=212.7

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ..++||+|-||.||+|++.+.. .++.++|+++.-+  ......+.|+.|..+|+.++|||||+|+|+|.+   ...|||
T Consensus       393 l~r~iG~GqFGdVy~gvYt~~~-kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e---~P~Wiv  468 (974)
T KOG4257|consen  393 LKRLIGEGQFGDVYKGVYTDPE-KGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE---QPMWIV  468 (974)
T ss_pred             HHHhhcCCcccceeeeEecccc-cCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec---cceeEE
Confidence            3489999999999999987653 4455566666544  355667889999999999999999999999976   679999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      ||+++.|.|..+|..+  ...|+..+...++.||+.+|+|||+..   +|||||...|||+.....|||+|||+++.+..
T Consensus       469 mEL~~~GELr~yLq~n--k~sL~l~tL~ly~~Qi~talaYLeSkr---fVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed  543 (974)
T KOG4257|consen  469 MELAPLGELREYLQQN--KDSLPLRTLTLYCYQICTALAYLESKR---FVHRDIAARNILVSSPQCVKLADFGLSRYLED  543 (974)
T ss_pred             EecccchhHHHHHHhc--cccchHHHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhheeecCcceeeecccchhhhccc
Confidence            9999999999999654  346899999999999999999999999   99999999999999999999999999998877


Q ss_pred             CCccCcc---cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          337 TDISNSS---VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       337 ~~~~~~~---~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..+....   ..+.|||||.+.-..++.++|||-|||.+||+++ |..||.+-...+..       ..+..+.+      
T Consensus       544 ~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI-------~~iEnGeR------  610 (974)
T KOG4257|consen  544 DAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVI-------GHIENGER------  610 (974)
T ss_pred             cchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceE-------EEecCCCC------
Confidence            6554432   2478999999999999999999999999999986 99999875432211       11222222      


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                          -..|.+++..+..++.+||.+||.+||.+.+|...|.++...
T Consensus       611 ----lP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qe  652 (974)
T KOG4257|consen  611 ----LPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQE  652 (974)
T ss_pred             ----CCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHH
Confidence                234788999999999999999999999999999999987653

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.8e-38  Score=307.13  Aligned_cols=261  Identities=21%  Similarity=0.328  Sum_probs=203.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||.|++|.||++...+   ....++++.............+.+|++++++++|+||+++++++.......++
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~---~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   77 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKN---TGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIG   77 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECC---CCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEE
Confidence            467888999999999999999654   33455566555444445567899999999999999999999998766556799


Q ss_pred             EEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++... .....+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++..
T Consensus        78 lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~  154 (287)
T cd06621          78 IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDFGVSGE  154 (287)
T ss_pred             EEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecCCeEEEeecccccc
Confidence            999999999999887432 23456899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh--HHHHhHhhhccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP--KEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..........++..|++||.+.+..++.++|||||||++|+|++|..||.....  ........+....     .     
T Consensus       155 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-----~-----  224 (287)
T cd06621         155 LVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM-----P-----  224 (287)
T ss_pred             ccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC-----C-----
Confidence            544333344567899999999988899999999999999999999999976522  1111112211100     0     


Q ss_pred             ccccCCCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~--~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .+.+....  ....+..+.+|+.+||..+|.+|||+.|+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         225 NPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             chhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            00000000  12346789999999999999999999999983

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.6e-38  Score=342.34  Aligned_cols=261  Identities=15%  Similarity=0.151  Sum_probs=201.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||+|....   .++.+++|+.+...  .....+++.+|+++++.++||||+++++++.+.  +.
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~---tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~--~~   76 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPV---CSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDG--DP   76 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECC---CCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeC--CE
Confidence            578899999999999999998543   34455566554322  233456799999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCC--------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          253 RMLIYERLFHGSLDRLIYGRS--------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~--------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      .++||||+++|+|.+++....        ....+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+|
T Consensus        77 lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G---IIHRDLKPeNILLd~dg~vK  153 (932)
T PRK13184         77 VYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG---VLHRDLKPDNILLGLFGEVV  153 (932)
T ss_pred             EEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchheEEEcCCCCEE
Confidence            999999999999999885321        1234677888999999999999999999   99999999999999999999


Q ss_pred             EeccCCCcccCCC--------------------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCC
Q 011995          325 LSGYGCAGHIPET--------------------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDS  384 (473)
Q Consensus       325 l~DFGla~~~~~~--------------------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~  384 (473)
                      |+|||++......                    ......||+.|||||.+.+..++.++|||||||++|||+||..||..
T Consensus       154 LiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~  233 (932)
T PRK13184        154 ILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRR  233 (932)
T ss_pred             EEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            9999999765211                    01123588999999999999999999999999999999999999976


Q ss_pred             CChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhcc
Q 011995          385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-TMRSIFEELDRQESR  458 (473)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~l~~~  458 (473)
                      ...........              +.++.... -...++..+.+++.+||..||++|+ +++++++.|+.+...
T Consensus       234 ~~~~ki~~~~~--------------i~~P~~~~-p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        234 KKGRKISYRDV--------------ILSPIEVA-PYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             cchhhhhhhhh--------------ccChhhcc-ccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence            43222111000              00000000 0124457789999999999999996 678888888876553

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=3.1e-38  Score=318.49  Aligned_cols=267  Identities=14%  Similarity=0.180  Sum_probs=197.8

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC--
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG--  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~--  249 (473)
                      ..++|...+.||+|+||.||++....   ..+.+++|+.... ........+.+|+.+++.++||||+++++++....  
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~   98 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAI---LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL   98 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECC---CCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccc
Confidence            45789999999999999999998533   3344555554432 22344567889999999999999999999875432  


Q ss_pred             --CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          250 --SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       250 --~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                        ....|+||||+++ +|.+.+..     .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|
T Consensus        99 ~~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~D  169 (364)
T cd07875          99 EEFQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILD  169 (364)
T ss_pred             cccCeEEEEEeCCCC-CHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEECCCCcEEEEe
Confidence              1357999999965 77777632     3788999999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc-------
Q 011995          328 YGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP-------  399 (473)
Q Consensus       328 FGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~-------  399 (473)
                      ||+++...... .....++..|+|||++.+..++.++|||||||++|||++|+.||.+.+.......+.....       
T Consensus       170 fG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  249 (364)
T cd07875         170 FGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFM  249 (364)
T ss_pred             CCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            99997664332 2344678999999999999999999999999999999999999987665443222210000       


Q ss_pred             ---------ccccccc-----ccccccccc---CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 ---------FLADDCR-----LSLIMDPQL---KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ---------~~~~~~~-----~~~~~~~~l---~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                               +......     ...+....+   ...........+.+|+.+||+.||.+|||+.++++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         250 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                     0000000     000000000   001112234678999999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=3.8e-38  Score=303.26  Aligned_cols=250  Identities=16%  Similarity=0.242  Sum_probs=197.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC----ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ++|...+.||+|+||.||+|...++   ++.++++.......    ......+.+|+.++++++|+||+++++++.+...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~---~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   78 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADT---GRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPME   78 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCC---CcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCC
Confidence            5788899999999999999986543   34555555443321    2234678899999999999999999998876544


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ..+++||||+++++|.+++...   ..+++..+..++.|++.||+|||+.+   |+|+||||+|||++.++.++|+|||+
T Consensus        79 ~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~Dfg~  152 (265)
T cd06652          79 RTLSIFMEHMPGGSIKDQLKSY---GALTENVTRKYTRQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGA  152 (265)
T ss_pred             ceEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEecCCCCEEECcCcc
Confidence            6788999999999999998532   35788999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC-----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPET-----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +......     ......++..|+|||.+.+..++.++|||||||++|||++|+.||..............         
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~---------  223 (265)
T cd06652         153 SKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIAT---------  223 (265)
T ss_pred             ccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhc---------
Confidence            8755321     22334577899999999888899999999999999999999999976533322111110         


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                             .......+...+..+.+++.+||. +|++||++++|++
T Consensus       224 -------~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         224 -------QPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             -------CCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence                   001112355667788999999995 9999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=1.7e-38  Score=308.93  Aligned_cols=265  Identities=22%  Similarity=0.309  Sum_probs=202.9

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCccccee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLG  243 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g  243 (473)
                      +.++.+....++|+..+.||+|+||.||++.....   .+.+++++...  .......+.+|+.+++.+ +|+||+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~---~~~~~ik~~~~--~~~~~~~~~~e~~~l~~l~~h~~i~~~~~   82 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKN---GSKAAVKILDP--IHDIDEEIEAEYNILKALSDHPNVVKFYG   82 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCC---CceeEEEeecc--ccchHHHHHHHHHHHHHHhcCCCeeeeee
Confidence            44566777889999999999999999999986443   34444554332  222346688999999999 6999999999


Q ss_pred             eeecC---CCCceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          244 FHARD---GSDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       244 ~~~~~---~~~~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      ++...   ..+..++||||+++++|.+++... .....+++..+..++.|++.||.|||+.+   |+||||||+||+++.
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~  159 (286)
T cd06638          83 MYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK---TIHRDVKGNNILLTT  159 (286)
T ss_pred             eeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC---ccccCCCHHhEEECC
Confidence            87532   236789999999999999987532 23456899999999999999999999998   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC--ccCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          320 DFSAKLSGYGCAGHIPETD--ISNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~--~~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      ++.+||+|||++.......  .....++..|+|||++..     ..++.++|||||||++|||++|+.||..........
T Consensus       160 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~  239 (286)
T cd06638         160 EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALF  239 (286)
T ss_pred             CCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHh
Confidence            9999999999987654322  233467889999999853     347889999999999999999999997654332211


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                      .....             ..+.+  ..+...+..+.+++.+||+.||++|||+.||++.+
T Consensus       240 ~~~~~-------------~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         240 KIPRN-------------PPPTL--HQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             hcccc-------------CCCcc--cCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            11000             00000  01223356789999999999999999999999753

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=3.9e-38  Score=301.32  Aligned_cols=249  Identities=18%  Similarity=0.381  Sum_probs=196.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|+..+.||+|+||.||+|.+.++.    .++++.  ..........+.+|++++++++||||+++++++...  ...+
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~----~~~~k~--~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   75 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKR----KVAIKT--IREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER--SPIC   75 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCC----eEEEEE--CCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccC--CceE
Confidence            35777799999999999999865332    233333  333333456789999999999999999999988765  6889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++..+..++.+++.+|+|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        76 ~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  150 (256)
T cd05112          76 LVFEFMEHGCLSDYLRAQ--RGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRFV  150 (256)
T ss_pred             EEEEcCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccccceEEEcCCCeEEECCCcceeec
Confidence            999999999999998543  345889999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCCcc---CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDIS---NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~~---~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ......   ...++..|+|||.+.+..++.++|||||||++|||++ |..||...........+..       +.   ..
T Consensus       151 ~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~-------~~---~~  220 (256)
T cd05112         151 LDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINA-------GF---RL  220 (256)
T ss_pred             ccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhC-------CC---CC
Confidence            433222   2234568999999998889999999999999999998 9999976554332221110       00   00


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .       .+...+..+.+|+.+||+.+|++|||+.++++.|.
T Consensus       221 ~-------~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         221 Y-------KPRLASQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             C-------CCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence            0       12223578999999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=2.3e-38  Score=306.90  Aligned_cols=246  Identities=20%  Similarity=0.339  Sum_probs=197.4

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |+..+.||.|+||.||+|....+   ...+++++............+.+|++++++++|+||+++++++..+  +..++|
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~lv   80 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRT---KEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKG--TKLWII   80 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCC---CeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccC--CceEEE
Confidence            55558899999999999986443   3345555554444445567889999999999999999999998765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++++|.+++..    ..+++..+..++.|++.||.|||+++   ++|+||+|+||+++.++.++|+|||++.....
T Consensus        81 ~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~---ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06642          81 MEYLGGGSALDLLKP----GPLEETYIATILREILKGLDYLHSER---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             EEccCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhcCC---eeccCCChheEEEeCCCCEEEccccccccccC
Confidence            999999999998842    35899999999999999999999998   99999999999999999999999999876643


Q ss_pred             CCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          337 TDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       337 ~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      ...  ....++..|+|||.+.+..++.++|||||||++|||++|..||...........+       ..          .
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~-------~~----------~  216 (277)
T cd06642         154 TQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLI-------PK----------N  216 (277)
T ss_pred             cchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhh-------hc----------C
Confidence            321  2235678899999999888999999999999999999999999754432211110       00          0


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .........+..+.+++.+||+.+|++||++.++++.
T Consensus       217 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         217 SPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             CCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            0111233456789999999999999999999999983

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=3.6e-38  Score=308.90  Aligned_cols=248  Identities=21%  Similarity=0.347  Sum_probs=198.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|+..+.||.|+||.||+|....   ....++++..... .......+.+|+.+++.++|+||+++++++...  +.++
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~---~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~   92 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVA---TGQEVAIKQINLQ-KQPKKELIINEILVMKELKNPNIVNFLDSFLVG--DELF   92 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcC---CCcEEEEEEEecc-cCchHHHHHHHHHHHHhcCCCceeeeeeeEecC--ceEE
Confidence            468888999999999999998433   3344445544433 223456788999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+++++|.+++..    ..+++..+..++.+++.||+|||+.+   ++|+||||+||+++.++.+||+|||++...
T Consensus        93 lv~e~~~~~~L~~~~~~----~~l~~~~~~~i~~~l~~al~~LH~~~---i~H~dL~p~Nili~~~~~~kl~dfg~~~~~  165 (296)
T cd06655          93 VVMEYLAGGSLTDVVTE----TCMDEAQIAAVCRECLQALEFLHANQ---VIHRDIKSDNVLLGMDGSVKLTDFGFCAQI  165 (296)
T ss_pred             EEEEecCCCcHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccchhc
Confidence            99999999999998843    35899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .....  ....++..|+|||.+.+..++.++|||||||++|+|++|..||...........+.-..             .
T Consensus       166 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~-------------~  232 (296)
T cd06655         166 TPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNG-------------T  232 (296)
T ss_pred             ccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcC-------------C
Confidence            43322  23467789999999988889999999999999999999999998765543322111000             0


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +.+  ..+..++..+.++|.+||..||.+||++.+|++
T Consensus       233 ~~~--~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         233 PEL--QNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             ccc--CCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            000  113345678899999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.3e-37  Score=300.38  Aligned_cols=253  Identities=21%  Similarity=0.277  Sum_probs=188.6

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEecc
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF  261 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~  261 (473)
                      .||+|+||.||+|...++.. ...+.++.............+.+|+.+++.++||||+++++++...  ...++||||++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~   78 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTG-VARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEA--IPYLLVFEYCE   78 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCC-cceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCC--CccEEEEecCC
Confidence            59999999999997543322 2222334333333344567899999999999999999999998765  78999999999


Q ss_pred             CCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC--
Q 011995          262 HGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD--  338 (473)
Q Consensus       262 ~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~--  338 (473)
                      +|+|.+++..... ...+++..+..++.||+.||+|||+.+   ++||||||+|||++.++.++|+|||++.......  
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~  155 (268)
T cd05086          79 LGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN---FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYI  155 (268)
T ss_pred             CCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC---eeccCCccceEEEcCCccEEecccccccccCcchhh
Confidence            9999999965322 235677888999999999999999998   9999999999999999999999999986432221  


Q ss_pred             --ccCcccccccCChhhhhc-------CCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          339 --ISNSSVAAANLSVETLER-------GLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       339 --~~~~~~t~~y~aPE~~~~-------~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                        .....++..|+|||++..       ..++.++|||||||++|||++ |..||......+....+...        ...
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~--------~~~  227 (268)
T cd05086         156 ETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKD--------QQV  227 (268)
T ss_pred             hcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhh--------ccc
Confidence              123456789999999753       235789999999999999996 57788765443322211100        011


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ...++.+    ....+..+.+++..|| .+|.+||++.+|++.|.
T Consensus       228 ~~~~~~~----~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         228 KLFKPQL----ELPYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             ccCCCcc----CCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            1122222    2234577888999999 67999999999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=6.8e-38  Score=303.70  Aligned_cols=247  Identities=20%  Similarity=0.329  Sum_probs=201.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      .|+..+.||.|+||.||+|.....   ...+++++............+.+|+.+++.+.|+||+++++++.++  ...++
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~l   79 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRT---QQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKG--TKLWI   79 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccC---CEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC--CEEEE
Confidence            466668999999999999986543   3445566555444445567899999999999999999999998876  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+++|+|.+++..    ..+++..+..++.|++.||+|||+.+   ++|+||+|+||+++.++.++|+|||++....
T Consensus        80 v~e~~~~~~L~~~i~~----~~l~~~~~~~~~~~l~~~l~~lh~~~---ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~  152 (277)
T cd06640          80 IMEYLGGGSALDLLRA----GPFDEFQIATMLKEILKGLDYLHSEK---KIHRDIKAANVLLSEQGDVKLADFGVAGQLT  152 (277)
T ss_pred             EEecCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCcCCChhhEEEcCCCCEEEcccccceecc
Confidence            9999999999999843    35889999999999999999999998   9999999999999999999999999997664


Q ss_pred             CCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          336 ETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       336 ~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ....  ....++..|+|||.+.+..++.++|+|||||++|||++|..||...........+..                 
T Consensus       153 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~-----------------  215 (277)
T cd06640         153 DTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPK-----------------  215 (277)
T ss_pred             CCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhc-----------------
Confidence            4321  233567889999999888899999999999999999999999976554332211110                 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ......+..++..+.+++.+||+.+|++||++.++++.
T Consensus       216 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         216 NNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             CCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            01122345677889999999999999999999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=5e-38  Score=300.24  Aligned_cols=248  Identities=20%  Similarity=0.331  Sum_probs=199.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||.|+||.||+|...++.   ..++++.....   .....+.+|+++++.++|+||+++++++...  ...|
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~---~~~~~k~~~~~---~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~   74 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETG---QVVAIKVVPVE---EDLQEIIKEISILKQCDSPYIVKYYGSYFKN--TDLW   74 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCC---cEEEEEEeecH---HHHHHHHHHHHHHHhCCCCcEeeeeeeeecC--CcEE
Confidence            57888899999999999999976532   33344443322   1267899999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +++||+.+++|.+++...  ...+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++...
T Consensus        75 l~~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~  149 (256)
T cd06612          75 IVMEYCGAGSVSDIMKIT--NKTLTEEEIAAILYQTLKGLEYLHSNK---KIHRDIKAGNILLNEEGQAKLADFGVSGQL  149 (256)
T ss_pred             EEEecCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEECCCCcEEEcccccchhc
Confidence            999999999999998542  356899999999999999999999999   999999999999999999999999998876


Q ss_pred             CCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ....  .....++..|++||.+.+..++.++|||||||++|+|++|..||...........+.-             ...
T Consensus       150 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~-------------~~~  216 (256)
T cd06612         150 TDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPN-------------KPP  216 (256)
T ss_pred             ccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhcc-------------CCC
Confidence            4432  2233567899999999888899999999999999999999999976543322111100             000


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +.  ...+...+..+.+++.+||+.||.+|||+.+|++
T Consensus       217 ~~--~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         217 PT--LSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             CC--CCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            00  1113345678999999999999999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3e-38  Score=314.45  Aligned_cols=254  Identities=13%  Similarity=0.162  Sum_probs=194.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||.||++.....   .+.+++|+....  ........+.+|+.++..++|+||+.+++++.++  +.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~   75 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNT---GQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDE--NN   75 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCC---CCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecC--Ce
Confidence            4788899999999999999986543   345556655421  1223345688999999999999999999988766  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||+++|+|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~  150 (331)
T cd05597          76 LYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVLAIDSVHQLG---YVHRDIKPDNVLLDKNGHIRLADFGSCL  150 (331)
T ss_pred             EEEEEecCCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEECCCCHHHEEECCCCCEEEEECCcee
Confidence            99999999999999999542  346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCc---cCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      .......   ....+|+.|||||++..     ..++.++|||||||++|||++|+.||......+....+...      .
T Consensus       151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~------~  224 (331)
T cd05597         151 RLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH------K  224 (331)
T ss_pred             ecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcC------C
Confidence            6543221   22358899999999863     45788999999999999999999999876543332222100      0


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCC--CCCCHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS--ERPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~--~RPt~~eil~~  451 (473)
                      ...      .+. ......+..+.+++.+||..++.  .|+++.++++.
T Consensus       225 ~~~------~~~-~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         225 EHF------QFP-PDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             Ccc------cCC-CccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            000      000 01123567889999998865443  37899999877

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=4e-38  Score=307.43  Aligned_cols=264  Identities=23%  Similarity=0.330  Sum_probs=203.6

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCccccee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLG  243 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g  243 (473)
                      ++.+++...+++|...+.||+|+||.||++...++   .+.+++++...  .......+.+|+.++.++ +|+||+++++
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~---~~~~aik~~~~--~~~~~~~~~~e~~~l~~l~~h~ni~~~~~   86 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKD---GSLAAVKILDP--ISDVDEEIEAEYNILQSLPNHPNVVKFYG   86 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCC---CCEEEEEEecc--cccHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            45566677789999999999999999999986443   34444554432  223346778899999999 8999999999


Q ss_pred             eeecCC---CCceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          244 FHARDG---SDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       244 ~~~~~~---~~~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      ++....   .+..++||||+++|+|.+++... .....+++..+..++.|++.||.|||+.+   ++|+||||+||+++.
T Consensus        87 ~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~nili~~  163 (291)
T cd06639          87 MFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR---IIHRDVKGNNILLTT  163 (291)
T ss_pred             EEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcC
Confidence            987532   24689999999999999988532 23456899999999999999999999998   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC--ccCcccccccCChhhhhcCC-----CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          320 DFSAKLSGYGCAGHIPETD--ISNSSVAAANLSVETLERGL-----LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~--~~~~~~t~~y~aPE~~~~~~-----~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      ++.+||+|||++.......  .....++..|+|||.+....     ++.++|||||||++|||++|+.||..........
T Consensus       164 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~  243 (291)
T cd06639         164 EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLF  243 (291)
T ss_pred             CCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHH
Confidence            9999999999987654332  22345678899999986432     6889999999999999999999998665433222


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .+....+             +.+  ..+......+.++|.+||+.+|++||++.++++.
T Consensus       244 ~~~~~~~-------------~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         244 KIPRNPP-------------PTL--LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             HHhcCCC-------------CCC--CcccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            1111000             000  0122345679999999999999999999999863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.3e-38  Score=298.56  Aligned_cols=245  Identities=20%  Similarity=0.370  Sum_probs=195.2

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +.||.|+||.||++...+    .+.+++|.............+.+|+++++++.|+||+++++++...  ...++||||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~----~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~~v~e~~   74 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG----NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQK--QPIYIVMELV   74 (251)
T ss_pred             CccccCCCceEEEEEEeC----CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC--CCeEEEEEcC
Confidence            469999999999998654    2344455444333334567899999999999999999999998766  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS  340 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~  340 (473)
                      ++++|.+++...  ...+++..+..++.+++.+|+|||+++   ++||||+|+|||++.++.+||+|||++.........
T Consensus        75 ~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~  149 (251)
T cd05041          75 PGGSLLTFLRKK--KNRLTVKKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYT  149 (251)
T ss_pred             CCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---EehhhcCcceEEEcCCCcEEEeeccccccccCCcce
Confidence            999999998543  336889999999999999999999999   999999999999999999999999998765422211


Q ss_pred             ----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          341 ----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       341 ----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                          ....+..|+|||.+.++.++.++|||||||++|||++ |..||...........+...                 .
T Consensus       150 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~-----------------~  212 (251)
T cd05041         150 VSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESG-----------------Y  212 (251)
T ss_pred             eccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcC-----------------C
Confidence                1223567999999988889999999999999999999 88999766543332222110                 0


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ....+...+.++.+++.+||..+|.+|||+.||++.|+
T Consensus       213 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         213 RMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             CCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            01123345678999999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=5.5e-38  Score=300.91  Aligned_cols=253  Identities=18%  Similarity=0.253  Sum_probs=202.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||.|+||.||++....+   ...+++++..... .....+.+..|+++++.++|+||+++++++........+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   77 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSD---GKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLY   77 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCC---CCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEE
Confidence            477889999999999999985443   3444555544332 334456788999999999999999999988765556789


Q ss_pred             EEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhh-----hcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          255 LIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLH-----EEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH-----~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ++|||+++++|.+++... .....+++..+..++.|++.||.|||     +.+   ++|+||+|+||+++.++.+||+||
T Consensus        78 ~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~---i~h~dl~p~nili~~~~~~kl~d~  154 (265)
T cd08217          78 IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT---VLHRDLKPANIFLDANNNVKLGDF  154 (265)
T ss_pred             EEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc---ceecCCCHHHEEEecCCCEEEecc
Confidence            999999999999998542 22457899999999999999999999     777   999999999999999999999999


Q ss_pred             CCCcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          329 GCAGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       329 Gla~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      |++.......  .....++..|++||.+.+..++.++||||||+++++|++|..||...........+.       .   
T Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~-------~---  224 (265)
T cd08217         155 GLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIK-------E---  224 (265)
T ss_pred             cccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHh-------c---
Confidence            9998775443  234467889999999988889999999999999999999999998765332221111       0   


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             .....++...+..+.+++.+||+.+|.+||++.+|++.
T Consensus       225 -------~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         225 -------GKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             -------CCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                   00112344566889999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=4.7e-38  Score=303.14  Aligned_cols=257  Identities=16%  Similarity=0.303  Sum_probs=197.6

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      |++.+++++.....||+|+||.||+|...++.   ..++++.... ......+.+.+|+.+++.++|+||+++++++..+
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~---~~v~~k~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   77 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQ---VRIAIKEIPE-RDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSEN   77 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCC---cEEEEEEecC-CCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccC
Confidence            34556777777789999999999999865443   2333333222 2334556889999999999999999999998765


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPI--DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKL  325 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l--~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl  325 (473)
                        +..++|+||+++++|.+++....  ..+  ++..+..++.||+.||+|||+.+   |+||||||+||+++. ++.++|
T Consensus        78 --~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~h~dl~p~nil~~~~~~~~~l  150 (268)
T cd06624          78 --GFFKIFMEQVPGGSLSALLRSKW--GPLKDNEQTIIFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLVNTYSGVVKI  150 (268)
T ss_pred             --CEEEEEEecCCCCCHHHHHHHhc--ccCCCcHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCeEEE
Confidence              78999999999999999996432  234  78889999999999999999998   999999999999986 679999


Q ss_pred             eccCCCcccCCCC--ccCcccccccCChhhhhcCC--CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          326 SGYGCAGHIPETD--ISNSSVAAANLSVETLERGL--LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       326 ~DFGla~~~~~~~--~~~~~~t~~y~aPE~~~~~~--~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      +|||++.......  .....++..|+|||++.+..  ++.++||||||+++|+|++|..||.........   .+.....
T Consensus       151 ~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~---~~~~~~~  227 (268)
T cd06624         151 SDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA---MFKVGMF  227 (268)
T ss_pred             ecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh---Hhhhhhh
Confidence            9999987653322  22335678999999986644  788999999999999999999999654322111   1110000


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                  .....++.....++.+|+.+||+.+|.+|||+.+++..
T Consensus       228 ------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         228 ------------KIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             ------------ccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence                        01112344566889999999999999999999999863

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.6e-38  Score=315.31  Aligned_cols=268  Identities=12%  Similarity=0.176  Sum_probs=196.2

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC-
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG-  249 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~-  249 (473)
                      ...++|...+.||+|+||.||+|....+   .+.+++|+..... .......+.+|+.+|+.++|+||+++++++.... 
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRL---RQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATS   88 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCC---CCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccc
Confidence            4568899999999999999999985433   3444555443221 2233456789999999999999999999875432 


Q ss_pred             ---CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 ---SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                         ....|+++|++ +++|.+++.    ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+
T Consensus        89 ~~~~~~~~~~~~~~-~~~l~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrdikp~Nil~~~~~~~kl~  160 (343)
T cd07878          89 IENFNEVYLVTNLM-GADLNNIVK----CQKLSDEHVQFLIYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCELRIL  160 (343)
T ss_pred             ccccCcEEEEeecC-CCCHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCChhhEEECCCCCEEEc
Confidence               14578999988 779988873    235999999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hccccccc-
Q 011995          327 GYGCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSRPFLAD-  403 (473)
Q Consensus       327 DFGla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~~~~~~-  403 (473)
                      |||++..... ......++..|+|||++.+ ..++.++|||||||++|||++|..||...........+. ........ 
T Consensus       161 Dfg~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  239 (343)
T cd07878         161 DFGLARQADD-EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEV  239 (343)
T ss_pred             CCccceecCC-CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            9999986543 2344578899999999876 468999999999999999999999998755433222111 00000000 


Q ss_pred             cccc-----ccccc--cccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRL-----SLIMD--PQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~-----~~~~~--~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+     .....  +....    .........+.+|+.+||+.||.+|||+.|+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         240 LKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0000     00000  00000    0001234567899999999999999999999965

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=5.8e-38  Score=304.87  Aligned_cols=249  Identities=20%  Similarity=0.279  Sum_probs=193.6

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |+..+.||.|+||.||+|......   ..++++.... ........+.+|+++++.++|+||+++++++...  +..++|
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~---~~~~~k~~~~-~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~--~~~~~v   80 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETG---VLAAAKVIDT-KSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE--NNLWIL   80 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCC---eEEEEEEeCC-CCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeC--CEEEEE
Confidence            566688999999999999865443   2333333322 1234456788999999999999999999998776  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++++|..++...  ...+++..+..++.|++.||.|||+.+   ++||||||+|||++.++.+||+|||++.....
T Consensus        81 ~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~~L~~LH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~  155 (282)
T cd06643          81 IEFCAGGAVDAVMLEL--ERPLTEPQIRVVCKQTLEALNYLHENK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTR  155 (282)
T ss_pred             EEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEccCCCEEEccccccccccc
Confidence            9999999999887542  346899999999999999999999999   99999999999999999999999999875532


Q ss_pred             C--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          337 T--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       337 ~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .  ......++..|+|||++.     +..++.++|||||||++|||++|.+||...........+....           
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~-----------  224 (282)
T cd06643         156 TIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSE-----------  224 (282)
T ss_pred             cccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcC-----------
Confidence            2  123346788999999984     3457889999999999999999999997655433221111000           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        .+.+  ..+..++.++.+|+.+||+.||.+||++.++++.
T Consensus       225 --~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         225 --PPTL--AQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             --CCCC--CCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              0000  1123455789999999999999999999998754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7e-38  Score=300.27  Aligned_cols=252  Identities=22%  Similarity=0.317  Sum_probs=200.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||.|+||.||+|....+   .+.+++++...... .....+.+|++++++++||||+++++++...  +.++
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~~~   76 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIAT---GELVAIKVIKLEPG-DDFEIIQQEISMLKECRHPNIVAYFGSYLRR--DKLW   76 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCC---CCEEEEEEEEcCch-hhHHHHHHHHHHHHhCCCCChhceEEEEEeC--CEEE
Confidence            5788889999999999999986443   23455555554322 2567889999999999999999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ++|||+.+++|.+++...  ...+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.+||+|||++...
T Consensus        77 l~~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  151 (262)
T cd06613          77 IVMEYCGGGSLQDIYQVT--RGPLSELQIAYVCRETLKGLAYLHETG---KIHRDIKGANILLTEDGDVKLADFGVSAQL  151 (262)
T ss_pred             EEEeCCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhCC---ceecCCChhhEEECCCCCEEECccccchhh
Confidence            999999999999988542  246899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCC--ccCcccccccCChhhhhcC---CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERG---LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~---~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....  .....++..|++||.+.+.   .++.++|||||||++|||++|..||...........+....           
T Consensus       152 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~-----------  220 (262)
T cd06613         152 TATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSN-----------  220 (262)
T ss_pred             hhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcc-----------
Confidence            4321  2334567889999999776   78999999999999999999999998765443322111000           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...+.+  ......+.++.+|+.+||..+|.+|||+.+|+.
T Consensus       221 ~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         221 FPPPKL--KDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             CCCccc--cchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000000  123456678999999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.1e-37  Score=301.01  Aligned_cols=259  Identities=21%  Similarity=0.399  Sum_probs=201.5

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC----C
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS----D  251 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~----~  251 (473)
                      |.+.+.||+|+||.||+|.+..+......+++|+..... .....+++.+|+.+++.++||||+++++++.....    .
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            556689999999999999876555555666676655432 33446678999999999999999999998765321    1


Q ss_pred             ceEEEEEeccCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS---DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ..++++||+.+|+|.+++....   ....+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN---FIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccchhhEEEcCCCCEEECcc
Confidence            3478899999999988874321   2235789999999999999999999998   999999999999999999999999


Q ss_pred             CCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccc
Q 011995          329 GCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       329 Gla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+++......    .....++..|++||.+....++.++|||||||++|||++ |.+||...........+..       
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~-------  230 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIK-------  230 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHc-------
Confidence            9988664322    122234578999999988889999999999999999999 8999976554332221110       


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                      ....          ..+...+..+.+++.+||+.+|++||++.++++.|+.+
T Consensus       231 ~~~~----------~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         231 GNRL----------KQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             CCcC----------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            0000          01223457899999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-39  Score=322.79  Aligned_cols=243  Identities=19%  Similarity=0.359  Sum_probs=196.0

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      -+||+|+||+||-|+..+   +...+  +++.+.. ..+..+-+..||.+.++++|.|||+++|.+..+  +++-|.||-
T Consensus       581 vVLGKGTYG~VYA~RD~~---tqvrI--aIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~sen--Gf~kIFMEq  653 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMD---TQVRI--AIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSEN--GFFKIFMEQ  653 (1226)
T ss_pred             EEeecCceeEEEeecccc---ceeEE--EeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCC--CeEEEEeec
Confidence            479999999999998444   43443  4444432 344556788999999999999999999998766  678889999


Q ss_pred             ccCCChhhhhhcCCCCCCC--CHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCCcEEEeccCCCcccCC
Q 011995          260 LFHGSLDRLIYGRSDGPPI--DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l--~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla~~~~~  336 (473)
                      ++||||.++|+...  +++  .+.+...+..||++||.|||+..   |||||||-+||||+ -.|.+||+|||-++.+..
T Consensus       654 VPGGSLSsLLrskW--GPlKDNEstm~fYtkQILeGLkYLHen~---IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg  728 (1226)
T KOG4279|consen  654 VPGGSLSSLLRSKW--GPLKDNESTMNFYTKQILEGLKYLHENK---IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG  728 (1226)
T ss_pred             CCCCcHHHHHHhcc--CCCccchhHHHHHHHHHHHHhhhhhhcc---eeeccccCCcEEEeeccceEEecccccchhhcc
Confidence            99999999997643  456  78889999999999999999998   99999999999997 459999999998876632


Q ss_pred             --CCccCcccccccCChhhhhcCC--CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhccccccccccccccc
Q 011995          337 --TDISNSSVAAANLSVETLERGL--LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       337 --~~~~~~~~t~~y~aPE~~~~~~--~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  411 (473)
                        ....++.||..|||||++..+.  |+.++|||||||++.||.||++||......+.. ..+    .+.        ..
T Consensus       729 inP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkV----Gmy--------Kv  796 (1226)
T KOG4279|consen  729 INPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKV----GMY--------KV  796 (1226)
T ss_pred             CCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhh----cce--------ec
Confidence              2345678999999999996654  899999999999999999999999755433221 111    000        11


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .    ..+|...+.++..||.+|+..||.+||++.++|+.
T Consensus       797 H----P~iPeelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  797 H----PPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             C----CCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence            2    23488999999999999999999999999999874

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-38  Score=304.81  Aligned_cols=245  Identities=20%  Similarity=0.333  Sum_probs=186.9

Q ss_pred             cceeecCCceEEEEEECCCCee--eeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDAST--SKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||+|+||.||+|........  .....++++.... .....+.+.+|+.+++.++||||+++++++..+  ...++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~--~~~~lv~   78 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCG--DESIMVQ   78 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeC--CCcEEEE
Confidence            3689999999999986443211  1111122222222 223346788999999999999999999999875  6789999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc--------EEEeccC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS--------AKLSGYG  329 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~--------vkl~DFG  329 (473)
                      ||+++|+|.+++...  ...+++..++.++.||+.||+|||+.+   |+||||||+|||++.++.        ++++|||
T Consensus        79 e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g  153 (258)
T cd05078          79 EYVKFGSLDTYLKKN--KNLINISWKLEVAKQLAWALHFLEDKG---LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPG  153 (258)
T ss_pred             ecCCCCcHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEecccccccCCCceEEecccc
Confidence            999999999999643  336899999999999999999999999   999999999999987764        6999999


Q ss_pred             CCcccCCCCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcC-CCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHIPETDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTG-RKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ++......  ....++..|+|||++.+. .++.++|||||||++|||++| ..||.............       .    
T Consensus       154 ~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~-------~----  220 (258)
T cd05078         154 ISITVLPK--EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYE-------D----  220 (258)
T ss_pred             cccccCCc--hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHH-------c----
Confidence            88655332  234567889999999764 479999999999999999998 46665544332221111       0    


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                              ...++.....++.+++.+||+.||++|||+++|++.|+
T Consensus       221 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         221 --------RHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             --------cccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                    00122234467899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=8.5e-38  Score=299.00  Aligned_cols=251  Identities=18%  Similarity=0.240  Sum_probs=199.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||+|++|.||++....+   .+.++++...... .....+.+.+|++++++++|+|++++++.+... ...++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~   76 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTD---GKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGE-DGLLY   76 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCC---CcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCC-CCEEE
Confidence            478889999999999999986443   3445555554332 234456788999999999999999999877543 25689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++... ....+++.++..++.+++.||+|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        77 lv~e~~~~~~l~~~l~~~-~~~~l~~~~~~~~~~~l~~~l~~lH~~~---i~H~di~p~nil~~~~~~~~l~df~~~~~~  152 (257)
T cd08223          77 IVMGFCEGGDLYHKLKEQ-KGKLLPENQVVEWFVQIAMALQYLHEKH---ILHRDLKTQNVFLTRTNIIKVGDLGIARVL  152 (257)
T ss_pred             EEecccCCCcHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCchhEEEecCCcEEEecccceEEe
Confidence            999999999999998653 2446899999999999999999999999   999999999999999999999999998766


Q ss_pred             CCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...  ......+++.|+|||++.+..++.++|||||||+++||++|+.||...+.......+..       + .      
T Consensus       153 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~-------~-~------  218 (257)
T cd08223         153 ENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIE-------G-K------  218 (257)
T ss_pred             cccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHh-------c-C------
Confidence            432  22334567899999999988899999999999999999999999976553322111110       0 0      


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ....+...+..+.+|+.+||+.||.+||++.++++.
T Consensus       219 ---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         219 ---LPPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             ---CCCCccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence               011234566789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=9.1e-38  Score=298.75  Aligned_cols=251  Identities=19%  Similarity=0.255  Sum_probs=201.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||.|+||.||.+....+   +..++++...... .......+.+|++++++++|+||+++++++.+.  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~~~   75 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTED---DSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDD--NTLL   75 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCC---CcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecC--CeEE
Confidence            477889999999999999885433   3344455444332 344567789999999999999999999999875  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++.... ...+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.+||+|||++...
T Consensus        76 ~~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~  151 (256)
T cd08221          76 IEMEYANGGTLYDKIVRQK-GQLFEEEMVLWYLFQIVSAVSYIHKAG---ILHRDIKTLNIFLTKAGLIKLGDFGISKIL  151 (256)
T ss_pred             EEEEecCCCcHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChHhEEEeCCCCEEECcCcceEEc
Confidence            9999999999999996542 456899999999999999999999998   999999999999999999999999998766


Q ss_pred             CCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ....  .....++..|+|||.+.+..++.++||||||+++|||++|..||......+....+...               
T Consensus       152 ~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~---------------  216 (256)
T cd08221         152 GSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQG---------------  216 (256)
T ss_pred             ccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcC---------------
Confidence            4332  23446789999999998888899999999999999999999999775543322211100               


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                       ... ..+...+.++.+++.+||..+|.+||++.++++.+
T Consensus       217 -~~~-~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         217 -NYT-PVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             -CCC-CCccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence             000 11234567899999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=4.8e-38  Score=305.36  Aligned_cols=261  Identities=19%  Similarity=0.280  Sum_probs=201.9

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCccccee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLG  243 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g  243 (473)
                      .++.++....+.|+..+.||.|+||.||+|.....   ...+++++...  .......+..|+.++.++ +|+||+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~---~~~~a~K~~~~--~~~~~~~~~~e~~~l~~~~~h~~i~~~~~   80 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKT---GQLAAIKVMDV--TEDEEEEIKLEINMLKKYSHHRNIATYYG   80 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCC---CcEEEEEEEec--ChHHHHHHHHHHHHHHHhcCCCcEEEEee
Confidence            35556666678899999999999999999986543   23444554433  233456788999999998 7999999999


Q ss_pred             eeecC----CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          244 FHARD----GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       244 ~~~~~----~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      ++...    ..+..|+||||+++|+|.+++... ....+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.
T Consensus        81 ~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dl~~~nili~~  156 (282)
T cd06636          81 AFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNT-KGNALKEDWIAYICREILRGLAHLHAHK---VIHRDIKGQNVLLTE  156 (282)
T ss_pred             ehhcccccCCCCEEEEEEEeCCCCcHHHHHHHc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECC
Confidence            88542    236789999999999999998653 2445888999999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCC--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          320 DFSAKLSGYGCAGHIPET--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      ++.++|+|||++......  ......++..|+|||.+.     ...++.++|||||||++|||++|..||..........
T Consensus       157 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~  236 (282)
T cd06636         157 NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALF  236 (282)
T ss_pred             CCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhh
Confidence            999999999998765322  223346788999999985     3457889999999999999999999997654333222


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .+.+..             .+.   .....++.++.+||.+||+.||.+||++.||++
T Consensus       237 ~~~~~~-------------~~~---~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         237 LIPRNP-------------PPK---LKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             hHhhCC-------------CCC---CcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            111100             000   012235578999999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=4.7e-38  Score=302.45  Aligned_cols=248  Identities=19%  Similarity=0.312  Sum_probs=195.3

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-----CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      +|...+.||.|+||.||+|...++    ..++++......     .......+.+|+++++.++|+||+++++++.+.  
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~----~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--   74 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQG----QLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDD--   74 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCC----CeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecC--
Confidence            477789999999999999975432    334444443322     122345688999999999999999999999766  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..++||||+++++|.+++...   ..+++..+..++.|++.||+|||+.+   |+|+||+|+||+++.++.++|+|||+
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~  148 (265)
T cd06631          75 NTISIFMEFVPGGSISSILNRF---GPLPEPVFCKYTKQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGC  148 (265)
T ss_pred             CeEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHhEEECCCCeEEeccchh
Confidence            7899999999999999999542   35889999999999999999999999   99999999999999999999999998


Q ss_pred             CcccCCC--------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc
Q 011995          331 AGHIPET--------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       331 a~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      +......        ......++..|+|||++.+..++.++|||||||++|||++|..||...........+.-..    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~----  224 (265)
T cd06631         149 ARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHR----  224 (265)
T ss_pred             hHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhcc----
Confidence            8754211        1123456789999999998889999999999999999999999997654333221111000    


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                 ......+...+.++.+++.+||+.+|.+||++.++++
T Consensus       225 -----------~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         225 -----------GLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             -----------CCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                       0001123345678899999999999999999999985

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=1.9e-38  Score=303.71  Aligned_cols=252  Identities=21%  Similarity=0.367  Sum_probs=197.4

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChh-hHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |+..+.||+|+||+||++....+.   ..+++|+......... .....+|+.++++++|+||+++++++...  ...++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~---~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~~   75 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNG---QKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDD--NYLYI   75 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTT---EEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEES--SEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCC---eEEEEEEeccccccccccchhhhhhhcccccccccccccccccccc--ccccc
Confidence            567799999999999999965543   4556666655432222 23346699999999999999999999875  88999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc-
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI-  334 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~-  334 (473)
                      ||||+.+++|.+++.   ....+++..+..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||.+... 
T Consensus        76 v~~~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~L~~Lh~~~---i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~  149 (260)
T PF00069_consen   76 VMEYCPGGSLQDYLQ---KNKPLSEEEILKIAYQILEALAYLHSKG---IVHRDIKPENILLDENGEVKLIDFGSSVKLS  149 (260)
T ss_dssp             EEEEETTEBHHHHHH---HHSSBBHHHHHHHHHHHHHHHHHHHHTT---EEESSBSGGGEEESTTSEEEESSGTTTEEST
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence            999999999999995   2346899999999999999999999999   999999999999999999999999998753 


Q ss_pred             -CCCCccCcccccccCChhhhh-cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 -PETDISNSSVAAANLSVETLE-RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 -~~~~~~~~~~t~~y~aPE~~~-~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                       .........++..|+|||++. +..++.++||||||+++|+|++|..||......................        
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------  221 (260)
T PF00069_consen  150 ENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPS--------  221 (260)
T ss_dssp             STTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHH--------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccc--------
Confidence             223334557789999999998 7789999999999999999999999998763333322222111000000        


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       ..  .........+.+++.+||+.||++||++.++++
T Consensus       222 -~~--~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  222 -SS--QQSREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             -HT--TSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             -cc--cccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             00  000112378999999999999999999999985

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-38  Score=305.04  Aligned_cols=251  Identities=20%  Similarity=0.284  Sum_probs=197.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|++.+.||.|+||.||+|....+   ...+++++.... .......+.+|++++++++|+||+++++++..+  ...+
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~---~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   78 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKET---GLFAAAKIIQIE-SEEELEDFMVEIDILSECKHPNIVGLYEAYFYE--NKLW   78 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCC---CcEEEEEEEeeC-CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecC--CeEE
Confidence            5688889999999999999986543   234445554432 333456788999999999999999999998865  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++..+..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||++...
T Consensus        79 lv~e~~~~~~L~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~nili~~~~~~~l~d~g~~~~~  153 (280)
T cd06611          79 ILIEFCDGGALDSIMLEL--ERGLTEPQIRYVCRQMLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVSAKN  153 (280)
T ss_pred             EEeeccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEECCCCCEEEccCccchhh
Confidence            999999999999998542  346899999999999999999999999   999999999999999999999999988655


Q ss_pred             CCCC--ccCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ....  .....++..|++||.+..     ..++.++|||||||++|||++|..||...........+....         
T Consensus       154 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~---------  224 (280)
T cd06611         154 KSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSE---------  224 (280)
T ss_pred             cccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCC---------
Confidence            3221  233457889999999853     346789999999999999999999997754433221111000         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          .+.+  ..+...+.++.+++.+||+.||.+||++.++++.
T Consensus       225 ----~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         225 ----PPTL--DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             ----CCCc--CCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence                0000  1133456788999999999999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=6.5e-38  Score=299.71  Aligned_cols=247  Identities=22%  Similarity=0.378  Sum_probs=196.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||++...+.     .++++.....   .....+.+|+.++.+++|+||+++++++..   +..+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~-----~~~iK~~~~~---~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~---~~~~   74 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEYTGQ-----KVAVKNIKCD---VTAQAFLEETAVMTKLHHKNLVRLLGVILH---NGLY   74 (254)
T ss_pred             HHceeeeeeccCCCCceEecccCCC-----ceEEEeecCc---chHHHHHHHHHHHHhCCCCCcCeEEEEEcC---CCcE
Confidence            4688889999999999999875332     2334443321   234678899999999999999999998864   4579


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+++|.+++... ....+++..+..++.|++.||.|||+.+   ++||||||+|||++.++.+||+|||++...
T Consensus        75 ~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~H~dl~p~nili~~~~~~kl~Dfg~~~~~  150 (254)
T cd05083          75 IVMELMSKGNLVNFLRTR-GRALVSVIQLLQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFGLARVG  150 (254)
T ss_pred             EEEECCCCCCHHHHHHhc-CcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCcEEECCCccceec
Confidence            999999999999999654 2346899999999999999999999998   999999999999999999999999998754


Q ss_pred             CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ... ......+..|+|||.+.++.++.++|||||||++|||++ |..||...........+....               
T Consensus       151 ~~~-~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~---------------  214 (254)
T cd05083         151 SMG-VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGY---------------  214 (254)
T ss_pred             ccc-CCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCC---------------
Confidence            322 223344578999999988889999999999999999997 999998765544332222110               


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                        ....+..++..+.+++.+||+.+|.+||++.+|++.|++
T Consensus       215 --~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         215 --RMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             --CCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence              001123445788999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4e-38  Score=320.73  Aligned_cols=262  Identities=18%  Similarity=0.244  Sum_probs=193.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ..+|.+.+.||+|+||.||++...+.. ..+.+++|....      ...+.+|+++|+.++|||||++++++...  ...
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~-~~~~v~vK~~~~------~~~~~~E~~il~~l~h~~iv~~~~~~~~~--~~~  161 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDE-QRKKVIVKAVTG------GKTPGREIDILKTISHRAIINLIHAYRWK--STV  161 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCc-cceeEEEEeccc------cccHHHHHHHHHhcCCCCccceeeeEeeC--CEE
Confidence            357999999999999999999764432 334444443321      13456899999999999999999988765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+|||++. ++|.+++.   ....+++..++.++.||+.||.|||+++   ||||||||+|||++.++.++|+|||++..
T Consensus       162 ~lv~e~~~-~~l~~~l~---~~~~l~~~~~~~i~~ql~~aL~~LH~~g---ivHrDlkp~Nill~~~~~~~l~DfG~a~~  234 (392)
T PHA03207        162 CMVMPKYK-CDLFTYVD---RSGPLPLEQAITIQRRLLEALAYLHGRG---IIHRDVKTENIFLDEPENAVLGDFGAACK  234 (392)
T ss_pred             EEEehhcC-CCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEccCccccc
Confidence            99999985 68888883   3456999999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH----HhHhhhcc--cc-cc
Q 011995          334 IPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE----RNLVKWSR--PF-LA  402 (473)
Q Consensus       334 ~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~----~~~~~~~~--~~-~~  402 (473)
                      .....    .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.+......    ..++....  +. ..
T Consensus       235 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~  314 (392)
T PHA03207        235 LDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFP  314 (392)
T ss_pred             cCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccC
Confidence            54332    1245689999999999998999999999999999999999999976543211    11111000  00 00


Q ss_pred             ccc--cccc---ccccccCCCC--C-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 DDC--RLSL---IMDPQLKGRF--P-----LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ~~~--~~~~---~~~~~l~~~~--~-----~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...  .+..   ......+..+  +     ...+.++.+||.+||..||.+|||+.|++..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        315 QNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             CccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000  0000   0000000000  0     1234678899999999999999999999875

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=2.5e-38  Score=315.17  Aligned_cols=254  Identities=14%  Similarity=0.161  Sum_probs=195.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||++.....   .+.+++++....  ........+.+|+.++..++|+||+++++++.+.  +.
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~   75 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNA---DKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDE--NN   75 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCC---CCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecC--CE
Confidence            4688889999999999999987554   344455554321  1222334578899999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||+++|+|.+++...  ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~---iiHrDlkp~Nili~~~~~~kL~DfG~a~  150 (332)
T cd05623          76 LYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCL  150 (332)
T ss_pred             EEEEEeccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEeecchhe
Confidence            99999999999999999642  346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCC---ccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          333 HIPETD---ISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       333 ~~~~~~---~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      ......   .....+|+.|+|||++.     ...++.++|||||||++|||++|+.||...........+...      .
T Consensus       151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~------~  224 (332)
T cd05623         151 KLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH------K  224 (332)
T ss_pred             ecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCC------C
Confidence            553222   12346899999999986     345889999999999999999999999876544433222110      0


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~  451 (473)
                      ...      .. ......++.++.+|+.+|+..++.+  |+++.++++.
T Consensus       225 ~~~------~~-p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         225 ERF------QF-PAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             ccc------cC-CCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            000      00 0112345688999999988665444  6899999877

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=4.6e-38  Score=302.87  Aligned_cols=251  Identities=22%  Similarity=0.306  Sum_probs=195.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||+|...++   .+.+++++.+... ......+.+|+.+++.++||||+++++++...  +..+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~---~~~~~ik~~~~~~-~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~--~~~~   82 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNT---GELAAIKVIKLEP-GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRR--DKLW   82 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCC---CcEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeC--CEEE
Confidence            4677779999999999999985443   3445566554432 23345678999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++..   ...+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        83 lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd06645          83 ICMEFCGGGSLQDIYHV---TGPLSESQIAYVSRETLQGLYYLHSKG---KMHRDIKGANILLTDNGHVKLADFGVSAQI  156 (267)
T ss_pred             EEEeccCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECcceeeeEc
Confidence            99999999999999853   346899999999999999999999999   999999999999999999999999998755


Q ss_pred             CCC--CccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ...  ......++..|+|||++.   ...++.++|||||||++|||++|..||................           
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~-----------  225 (267)
T cd06645         157 TATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSN-----------  225 (267)
T ss_pred             cCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccC-----------
Confidence            322  123346788999999984   4558899999999999999999999986554332221111000           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...+....  ...++..+.+++.+||+.||++||++.+|++
T Consensus       226 ~~~~~~~~--~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         226 FQPPKLKD--KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             CCCCcccc--cCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence            00000100  1124467899999999999999999999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2.1e-38  Score=315.48  Aligned_cols=254  Identities=13%  Similarity=0.155  Sum_probs=195.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||++.....   .+.+++|+....  ........+.+|+.++..++|+||+.+++++.+.  +.
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~--~~   75 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHT---ERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDE--NY   75 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCC---CCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC--CE
Confidence            4788899999999999999986543   344555554321  1222345578899999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|+||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        76 ~~lv~Ey~~gg~L~~~l~~~--~~~l~~~~~~~~~~qi~~~L~~lH~~~---iiHrDlkp~Nill~~~~~~kl~DfG~a~  150 (331)
T cd05624          76 LYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYIAEMVLAIHSIHQLH---YVHRDIKPDNVLLDMNGHIRLADFGSCL  150 (331)
T ss_pred             EEEEEeCCCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCchHHEEEcCCCCEEEEecccee
Confidence            99999999999999999642  346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCc---cCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      .......   ....+++.|+|||++.+     +.++.++|||||||++|||++|+.||......+....+...      .
T Consensus       151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~------~  224 (331)
T cd05624         151 KMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH------E  224 (331)
T ss_pred             eccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcC------C
Confidence            6643322   22468899999999875     46789999999999999999999999876544332222110      0


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~  451 (473)
                      ...      .+. .....++.++.+++.+||..++.+  |++++++++.
T Consensus       225 ~~~------~~p-~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         225 ERF------QFP-SHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             Ccc------cCC-CccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            000      000 011235678999999999866544  4688888764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-38  Score=316.78  Aligned_cols=240  Identities=16%  Similarity=0.189  Sum_probs=185.0

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC---CCCCcccceeeeecCCCCceEEEE
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL---QHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l---~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      ||+|+||+||+|+...   ..+.+++|+.....  .......+..|..++..+   +||||+.+++++...  +..|+||
T Consensus         1 lG~G~~g~Vy~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~--~~~~lv~   75 (330)
T cd05586           1 IGKGTFGQVYQVRKKD---TRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTD--SDLYLVT   75 (330)
T ss_pred             CCCCCceEEEEEEECC---CCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecC--CeEEEEE
Confidence            7999999999998543   33455566543221  122334456677777665   699999999988766  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      ||+.+|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++......
T Consensus        76 e~~~~g~L~~~l~~---~~~~~~~~~~~~~~qil~al~~LH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~  149 (330)
T cd05586          76 DYMSGGELFWHLQK---EGRFSEDRAKFYIAELVLALEHLHKYD---IVYRDLKPENILLDATGHIALCDFGLSKANLTD  149 (330)
T ss_pred             cCCCCChHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEecCCcCcCCCCC
Confidence            99999999998853   346899999999999999999999999   999999999999999999999999998754322


Q ss_pred             --CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          338 --DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       338 --~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                        ......+|..|+|||++.+. .++.++|||||||++|||++|..||......+....+.....              .
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~--------------~  215 (330)
T cd05586         150 NKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKV--------------R  215 (330)
T ss_pred             CCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCC--------------C
Confidence              22345789999999998765 489999999999999999999999987654443222211100              0


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCC----CHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERP----TMRSIFE  450 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RP----t~~eil~  450 (473)
                      +.   ....+.++.+|+.+||..||.+||    ++.++++
T Consensus       216 ~~---~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         216 FP---KNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             CC---CccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            00   112457889999999999999998    5666665

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.4e-37  Score=299.30  Aligned_cols=247  Identities=18%  Similarity=0.285  Sum_probs=195.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC--------hhhHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--------QGVKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      +|.....||.|+||.||+|....+   .+.++++........        ...+.+.+|+.++++++||||+++++++..
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   77 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASS---GELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLD   77 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCC---CcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEe
Confidence            367779999999999999985432   334445544332211        123568899999999999999999999876


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                      .  +..++||||+++++|.+++..   ...+++..+..++.|++.||+|||+.+   ++|+||+|+||+++.++.++|+|
T Consensus        78 ~--~~~~lv~e~~~~~~L~~~l~~---~~~l~~~~~~~~~~~l~~~l~~lH~~~---ivH~di~p~nil~~~~~~~~l~d  149 (267)
T cd06628          78 A--DHLNIFLEYVPGGSVAALLNN---YGAFEETLVRNFVRQILKGLNYLHNRG---IIHRDIKGANILVDNKGGIKISD  149 (267)
T ss_pred             C--CccEEEEEecCCCCHHHHHHh---ccCccHHHHHHHHHHHHHHHHHHHhcC---cccccCCHHHEEEcCCCCEEecc
Confidence            5  788999999999999999954   246889999999999999999999998   99999999999999999999999


Q ss_pred             cCCCcccCCCC--------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          328 YGCAGHIPETD--------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       328 FGla~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      ||+++......        .....++..|+|||.+.+..++.++|||||||++|+|++|+.||...........+.    
T Consensus       150 fg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~----  225 (267)
T cd06628         150 FGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIG----  225 (267)
T ss_pred             cCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHh----
Confidence            99987664221        112346788999999988889999999999999999999999998654332211110    


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                               ....    ..++...+..+.+++.+||+.||.+||++.+|++
T Consensus       226 ---------~~~~----~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         226 ---------ENAS----PEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             ---------ccCC----CcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence                     0011    1223455688999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=9.3e-38  Score=310.31  Aligned_cols=263  Identities=18%  Similarity=0.187  Sum_probs=190.7

Q ss_pred             Ccceeec--CCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          180 DRCISEG--LSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       180 ~~~lG~G--~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ..+||+|  +|++||++....   +++.+++|....... ......+.+|+++++.++||||+++++++..+  +..++|
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~--~~~~lv   77 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKP---TGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD--NELWVV   77 (327)
T ss_pred             hhhccccccceEEEEEEeecc---cCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEEC--CEEEEE
Confidence            4789999  678999998543   345555665554432 23345677899999999999999999999876  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++|+|.+++.... ...+++..++.++.|++.||+|||+++   |+||||||+|||++.++.++++||+.......
T Consensus        78 ~e~~~~~~l~~~~~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~  153 (327)
T cd08227          78 TSFMAYGSAKDLICTHF-MDGMSELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMIN  153 (327)
T ss_pred             EeccCCCcHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCChhhEEEecCCcEEEcccchhhcccc
Confidence            99999999999985432 335899999999999999999999999   99999999999999999999999986543221


Q ss_pred             CC---------ccCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhH-hhhcccccccc
Q 011995          337 TD---------ISNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL-VKWSRPFLADD  404 (473)
Q Consensus       337 ~~---------~~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~-~~~~~~~~~~~  404 (473)
                      ..         .....++..|+|||++.+  ..++.++|||||||++|||++|..||........... .....+...+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  233 (327)
T cd08227         154 HGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDT  233 (327)
T ss_pred             ccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccc
Confidence            10         112245677999999976  3589999999999999999999999976443221110 00000000000


Q ss_pred             c-----c-------------cccc---------cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 C-----R-------------LSLI---------MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ~-----~-------------~~~~---------~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .     .             ....         ........+....+..+.+|+.+||+.||++|||+.++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         234 TTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             cchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence            0     0             0000         00000011223456789999999999999999999999873

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=4.2e-38  Score=302.50  Aligned_cols=253  Identities=22%  Similarity=0.349  Sum_probs=200.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||++.....   .+.++++.............+.+|++++++++||||+++++++...  +..+
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~   75 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPT---GKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNN--GDIS   75 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCC---CcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecC--CEEE
Confidence            3577779999999999999986532   3444555554443445567899999999999999999999998776  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +|+||+++++|.+++....  ..+++..+..++.|++.||+|||+ .+   ++|+||||+||+++.++.++|+|||++..
T Consensus        76 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~---i~H~dl~~~ni~~~~~~~~~l~d~g~~~~  150 (265)
T cd06605          76 ICMEYMDGGSLDKILKEVQ--GRIPERILGKIAVAVLKGLTYLHEKHK---IIHRDVKPSNILVNSRGQIKLCDFGVSGQ  150 (265)
T ss_pred             EEEEecCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHcCCCC---eecCCCCHHHEEECCCCCEEEeecccchh
Confidence            9999999999999995432  578999999999999999999999 88   99999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH--HHhHhhhccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE--ERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..........++..|++||.+.+..++.++||||||+++|+|++|..||.......  .......             +.
T Consensus       151 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-------------~~  217 (265)
T cd06605         151 LVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQY-------------IV  217 (265)
T ss_pred             hHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHH-------------Hh
Confidence            54332223567789999999998899999999999999999999999997543111  1111110             00


Q ss_pred             ccccCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLK-AARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~-~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ... ....+.. .+.++.++|.+||..||.+|||+.+++..
T Consensus       218 ~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         218 NEP-PPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             cCC-CCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            000 0011222 66789999999999999999999999853

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=9.5e-38  Score=308.43  Aligned_cols=262  Identities=18%  Similarity=0.237  Sum_probs=185.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ..||+|+||.||+|+..+.. ..+.++++....   ......+.+|+++++.++||||+++++++........++||||+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~-~~~~~a~k~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGK-DEKEYALKQIEG---TGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             eEeccCCCeeEEEEEecCCC-ccceEEEEEecC---CCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeee
Confidence            68999999999999865432 334444544332   12235678999999999999999999998765557889999998


Q ss_pred             cCCChhhhhhcC------CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee----CCCCcEEEeccCC
Q 011995          261 FHGSLDRLIYGR------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI----DKDFSAKLSGYGC  330 (473)
Q Consensus       261 ~~gsL~~~l~~~------~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl----~~~~~vkl~DFGl  330 (473)
                      .+ +|.+++...      .....+++..+..++.||+.||.|||+.+   |+||||||+|||+    +.++.+||+|||+
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07867          83 EH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             CC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEccCCCCCCcEEEeeccc
Confidence            64 777776421      12235889999999999999999999999   9999999999999    5668999999999


Q ss_pred             CcccCCC-----CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-------HhH---h
Q 011995          331 AGHIPET-----DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-------RNL---V  394 (473)
Q Consensus       331 a~~~~~~-----~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-------~~~---~  394 (473)
                      ++.....     ......+|..|+|||++.+. .++.++|||||||++|||+||.+||........       ...   .
T Consensus       159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~  238 (317)
T cd07867         159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIF  238 (317)
T ss_pred             eeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHH
Confidence            9866432     12334678899999998764 489999999999999999999999975432110       000   0


Q ss_pred             h---------hcccc-cccccccc------cccccccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          395 K---------WSRPF-LADDCRLS------LIMDPQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       395 ~---------~~~~~-~~~~~~~~------~~~~~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .         |.... ........      ......+.   ..........+.+++.+||+.||.+|||+.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~  313 (317)
T cd07867         239 SVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQ  313 (317)
T ss_pred             HhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhc
Confidence            0         00000 00000000      00000000   0001123456889999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=8.8e-38  Score=306.28  Aligned_cols=248  Identities=20%  Similarity=0.306  Sum_probs=197.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .+|...+.||+|+||.||+|....+   ...++++...... ....+.+.+|+.+++.++|+||+++++++...  +..+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~---~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~~~   92 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIAT---GQEVAIKQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVG--DELW   92 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCC---CCEEEEEEEecCc-cchHHHHHHHHHHHHhCCCCCEeeEEEEEecC--CEEE
Confidence            5788889999999999999985432   3445555554332 23346688999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++..    ..+++..+..++.|++.||.|||+.+   ++||||||+|||++.++.++|+|||++...
T Consensus        93 lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~l~~~L~~LH~~~---i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~  165 (297)
T cd06656          93 VVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALDFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQI  165 (297)
T ss_pred             EeecccCCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEECcCccceEc
Confidence            99999999999999843    35889999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ....  .....+++.|++||.+.+..++.++|||||||++|+|++|..||...........+      ..         .
T Consensus       166 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~------~~---------~  230 (297)
T cd06656         166 TPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI------AT---------N  230 (297)
T ss_pred             cCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeee------cc---------C
Confidence            4332  12345778999999999888999999999999999999999999765432211100      00         0


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .......+...+..+.+|+.+||..||++||++.+|++
T Consensus       231 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         231 GTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             CCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            00001123445677899999999999999999999998

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.5e-37  Score=302.10  Aligned_cols=265  Identities=20%  Similarity=0.255  Sum_probs=197.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|....+   ++.+++++..... .....+.+.+|+.+++.++|+||+++++++...  ...
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~~   75 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRET---GQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRK--RKL   75 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCC---CcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeC--CEE
Confidence            4688889999999999999986543   3344455443222 223345678999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||++++.|..++..   ...+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++..
T Consensus        76 ~~v~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~ql~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (286)
T cd07847          76 HLVFEYCDHTVLNELEKN---PRGVPEHLIKKIIWQTLQAVNFCHKHN---CIHRDVKPENILITKQGQIKLCDFGFARI  149 (286)
T ss_pred             EEEEeccCccHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCChhhEEEcCCCcEEECcccccee
Confidence            999999999888877632   345899999999999999999999998   99999999999999999999999999987


Q ss_pred             cCCCC--ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hcccccc-------
Q 011995          334 IPETD--ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSRPFLA-------  402 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~~~~~-------  402 (473)
                      .....  .....++..|+|||.+.+ ..++.++|||||||++|||++|..||.+....+....+. .......       
T Consensus       150 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (286)
T cd07847         150 LTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFS  229 (286)
T ss_pred             cCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcc
Confidence            64432  223456788999999876 457899999999999999999999998765543322211 0000000       


Q ss_pred             cccccccccccccCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 DDCRLSLIMDPQLKGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..........+......     ....+..+.+|+.+||+.||++||++.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         230 TNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            00000000111111000     1134678899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.4e-37  Score=298.82  Aligned_cols=255  Identities=23%  Similarity=0.338  Sum_probs=201.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||.|+||+||+|...++   ...+++++............+.+|+++++.++|+||+++++.+...  +..+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   75 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPN---NEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVG--DELW   75 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCC---CcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeC--CEEE
Confidence            4788899999999999999986543   2344455554443344667899999999999999999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+++++|.+++........+++..+..++.|++.||+|||+.+   ++|+||+|+||++++++.++|+|||++...
T Consensus        76 iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~---i~h~~l~p~ni~~~~~~~~~l~df~~~~~~  152 (267)
T cd06610          76 LVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG---QIHRDIKAGNILLGEDGSVKIADFGVSASL  152 (267)
T ss_pred             EEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccchHHHh
Confidence            99999999999999965433356899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCCCc------cCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          335 PETDI------SNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       335 ~~~~~------~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .....      ....++..|++||.+... .++.++|+|||||++|||++|+.||...............     .    
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~-----~----  223 (267)
T cd06610         153 ADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQN-----D----  223 (267)
T ss_pred             ccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcC-----C----
Confidence            43221      223567899999999777 6899999999999999999999999765443221111100     0    


Q ss_pred             ccccccccCCC-CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          408 SLIMDPQLKGR-FPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~-~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          .+.+... .....+..+.+++.+||..||++||++.+|++
T Consensus       224 ----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         224 ----PPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             ----CCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                0001000 01245688899999999999999999999986

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.3e-39  Score=315.41  Aligned_cols=250  Identities=20%  Similarity=0.310  Sum_probs=194.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ..|++.+.||+||.+.||++...+...   .++.+++......+....|.+|+.+|.+| .|.+||+|++|-..+  +.+
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~i---yalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d--~~l  435 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQI---YALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTD--GYL  435 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcc---hhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccC--ceE
Confidence            457788999999999999998655432   11223333345667788999999999999 699999999998776  899


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ||||||= ..+|..+|.++. .....| .++.+..|++.++.++|.++   |||.||||.|+|+-. |.+||+|||+|..
T Consensus       436 YmvmE~G-d~DL~kiL~k~~-~~~~~~-~lk~ywkqML~aV~~IH~~g---IVHSDLKPANFLlVk-G~LKLIDFGIA~a  508 (677)
T KOG0596|consen  436 YMVMECG-DIDLNKILKKKK-SIDPDW-FLKFYWKQMLLAVKTIHQHG---IVHSDLKPANFLLVK-GRLKLIDFGIANA  508 (677)
T ss_pred             EEEeecc-cccHHHHHHhcc-CCCchH-HHHHHHHHHHHHHHHHHHhc---eeecCCCcccEEEEe-eeEEeeeechhcc
Confidence            9999975 559999996543 223334 88899999999999999999   999999999999864 5899999999988


Q ss_pred             cCCCCc----cCcccccccCChhhhhcC-----------CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          334 IPETDI----SNSSVAAANLSVETLERG-----------LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       334 ~~~~~~----~~~~~t~~y~aPE~~~~~-----------~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +..+..    ...+||+.||+||.+...           ..+.++||||||||||+|+.|++||......       |+ 
T Consensus       509 I~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~-------~a-  580 (677)
T KOG0596|consen  509 IQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQ-------IA-  580 (677)
T ss_pred             cCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHH-------HH-
Confidence            865533    345899999999998532           2567899999999999999999999753211       11 


Q ss_pred             cccccccccccccccccCCCCCHHHH-HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAA-RTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             ++..+.+|.-.-.|+..-. .++.++++.||+.||.+||++.++|+.
T Consensus       581 -------Kl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  581 -------KLHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             -------HHHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence                   3444555544334443222 339999999999999999999999863

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=2.2e-37  Score=295.70  Aligned_cols=253  Identities=22%  Similarity=0.418  Sum_probs=199.5

Q ss_pred             cccCcceeecCCceEEEEEECCCC-eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDA-STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |++.+.||.|+||.||++...+.. .....+++|+............+..|+.++..++|+||+++++++.+.  +..++
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~~   78 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEE--EPLMI   78 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCC--CeeEE
Confidence            345688999999999999976533 122444455544333333567899999999999999999999998776  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      +|||+++++|.+++.... ...+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++....
T Consensus        79 i~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lh~~~---~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~  154 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNR-PKELSLSDLLSFALQIARGMEYLESKN---FIHRDLAARNCLVGENLVVKISDFGLSRDLY  154 (258)
T ss_pred             EEeccCCCCHHHHHHhhh-hccCCHHHHHHHHHHHHHHHHHHhcCC---eeecccccceEEEccCCeEEEcccCCceecc
Confidence            999999999999995432 122899999999999999999999999   9999999999999999999999999997665


Q ss_pred             CCCccC---cccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          336 ETDISN---SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       336 ~~~~~~---~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ......   ..++..|++||.+.+..++.++|||||||+++||++ |.+||...........+....       .     
T Consensus       155 ~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~-------~-----  222 (258)
T smart00219      155 DDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGY-------R-----  222 (258)
T ss_pred             cccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCC-------C-----
Confidence            432211   235678999999988889999999999999999998 889987654433322221100       0     


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                           ...+...+.++.+++.+||..||.+|||+.++++.|
T Consensus       223 -----~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      223 -----LPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             -----CCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence                 011223567899999999999999999999999864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.1e-37  Score=304.44  Aligned_cols=250  Identities=19%  Similarity=0.259  Sum_probs=194.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|++.+.||.|+||.||+|....+.   +.+++++.... .....+.+.+|+.+++.++|+||+++++++..+  ...+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~---~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   85 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETG---ALAAAKVIETK-SEEELEDYMVEIEILATCNHPYIVKLLGAFYWD--GKLW   85 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCC---ceEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeC--CeEE
Confidence            56888899999999999999865433   33444443322 334567788999999999999999999998766  6899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|..++...  ...+++..+..++.|++.+|.|||+.+   ++||||||+||+++.++.++|+|||++...
T Consensus        86 lv~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  160 (292)
T cd06644          86 IMIEFCPGGAVDAIMLEL--DRGLTEPQIQVICRQMLEALQYLHSMK---IIHRDLKAGNVLLTLDGDIKLADFGVSAKN  160 (292)
T ss_pred             EEEecCCCCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhcCC---eeecCCCcceEEEcCCCCEEEccCccceec
Confidence            999999999998887542  345899999999999999999999998   999999999999999999999999988654


Q ss_pred             CCC--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ...  ......++..|+|||.+.     ...++.++|||||||++|||++|..||..........  .+...        
T Consensus       161 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~--~~~~~--------  230 (292)
T cd06644         161 VKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL--KIAKS--------  230 (292)
T ss_pred             cccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHH--HHhcC--------
Confidence            322  123345678999999984     3446889999999999999999999997654332211  11000        


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         ..+.  ...+..++.++.+++.+||..||++||++.++++
T Consensus       231 ---~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         231 ---EPPT--LSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             ---CCcc--CCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence               0000  0113345577899999999999999999999986

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-39  Score=310.05  Aligned_cols=249  Identities=20%  Similarity=0.269  Sum_probs=203.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +.|..-++||+||||.||-+..+   .++|.++.+....+  ....+..-.++|-.+|.+++.+.||.+--.|.+.  +.
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvr---aTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTk--d~  259 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVR---ATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETK--DA  259 (591)
T ss_pred             cceeeeEEEecccccceeEEEEe---cchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCC--Cc
Confidence            55788899999999999999844   35555555432211  1334555678899999999999999997666555  89


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|||+..|+||+|.-+|+... .+.|++..+..++.+|+.||++||...   ||+||+||+|||||+.|+++|+|+|||.
T Consensus       260 LClVLtlMNGGDLkfHiyn~g-~~gF~e~ra~FYAAEi~cGLehlH~~~---iVYRDLKPeNILLDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  260 LCLVLTLMNGGDLKFHIYNHG-NPGFDEQRARFYAAEIICGLEHLHRRR---IVYRDLKPENILLDDHGHVRISDLGLAV  335 (591)
T ss_pred             eEEEEEeecCCceeEEeeccC-CCCCchHHHHHHHHHHHhhHHHHHhcc---eeeccCChhheeeccCCCeEeeccceEE
Confidence            999999999999999887653 467999999999999999999999999   9999999999999999999999999999


Q ss_pred             ccCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          333 HIPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       333 ~~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .+..... ...+||.+|||||++.++.|+...|.|||||+||||+.|+.||.....+....-++..  .+.         
T Consensus       336 ei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr--~~~---------  404 (591)
T KOG0986|consen  336 EIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRR--TLE---------  404 (591)
T ss_pred             ecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHH--Hhc---------
Confidence            9877654 4449999999999999999999999999999999999999999876544433212110  111         


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMR  446 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  446 (473)
                         ....++...++++.+|....|.+||++|.-.+
T Consensus       405 ---~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  405 ---DPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             ---chhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence               12245778889999999999999999997655

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=7.7e-38  Score=304.42  Aligned_cols=265  Identities=18%  Similarity=0.252  Sum_probs=198.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|...++   .+.+++++..... .......+.+|+++++.++|+||+++++++...  +..
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~---~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~   75 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKAT---GEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRK--GRL   75 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCC---CcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEEC--CEE
Confidence            4688889999999999999986543   3344444433322 333457789999999999999999999999775  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||++++.+..++..   ...+++..+..++.||+.||.|||+.+   ++|+||+|+||+++.++.+||+|||++..
T Consensus        76 ~iv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~ni~~~~~~~~kl~d~g~~~~  149 (288)
T cd07833          76 YLVFEYVERTLLELLEAS---PGGLPPDAVRSYIWQLLQAIAYCHSHN---IIHRDIKPENILVSESGVLKLCDFGFARA  149 (288)
T ss_pred             EEEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEEeeecccc
Confidence            999999988777665532   345899999999999999999999999   99999999999999999999999999877


Q ss_pred             cCCCC---ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc------
Q 011995          334 IPETD---ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD------  403 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~------  403 (473)
                      .....   .....++..|+|||++.+. .++.++||||||+++|+|++|++||...........+.........      
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (288)
T cd07833         150 LRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELF  229 (288)
T ss_pred             cCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhc
Confidence            65432   2334567889999999888 7899999999999999999999999866543322211110000000      


Q ss_pred             --ccccc--ccccc----ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 --DCRLS--LIMDP----QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 --~~~~~--~~~~~----~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                        .....  ...+.    .....++..++.++.+||.+||..+|++||+++++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         230 SSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             ccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence              00000  00000    0011223345788999999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=5.5e-38  Score=328.73  Aligned_cols=274  Identities=15%  Similarity=0.180  Sum_probs=189.0

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeE------------E--EEEEEecCCCChhhHhHHHHHHHHHhCCCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKK------------F--EATVTRLNPSSQGVKEFINDVNTLASLQHPN  237 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn  237 (473)
                      ...++|++.+.||+|+||.||+|.++........            .  .+..+...........+.+|+.+|.+++|+|
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            3457899999999999999999876432211000            0  0011111222334567889999999999999


Q ss_pred             cccceeeeecCCCCceEEEEEeccCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       238 Iv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                      ||++++++...  +..|+|+|++. ++|.+++.....  ........+..|+.||+.||.|||+++   ||||||||+||
T Consensus       225 Iv~l~~~~~~~--~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g---IiHrDLKP~NI  298 (501)
T PHA03210        225 ILKIEEILRSE--ANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK---LIHRDIKLENI  298 (501)
T ss_pred             cCcEeEEEEEC--CeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHE
Confidence            99999999876  78899999984 577777643211  122345667889999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCC-CCCCChHHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKN-LDSRHPKEER  391 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p-~~~~~~~~~~  391 (473)
                      ||+.++.+||+|||++..+....   .....+|..|+|||++.+..++.++|||||||++|||++|..+ |.........
T Consensus       299 Ll~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~  378 (501)
T PHA03210        299 FLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGK  378 (501)
T ss_pred             EECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHH
Confidence            99999999999999998764332   1235689999999999999999999999999999999998754 4332221111


Q ss_pred             h---Hhhhccc----cccccccccccccc----ccCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          392 N---LVKWSRP----FLADDCRLSLIMDP----QLKGRFP-----LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       392 ~---~~~~~~~----~~~~~~~~~~~~~~----~l~~~~~-----~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .   .+.....    +......+...++.    .....++     .....++.+++.+||+.||.+|||+.|+|..
T Consensus       379 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        379 QLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            1   1111000    00000000000000    0000000     1234567889999999999999999999864

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=8.6e-38  Score=305.63  Aligned_cols=244  Identities=18%  Similarity=0.305  Sum_probs=193.0

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      ...||.|+||.||++....+   ...++++..... .....+.+.+|+.+++.++|+||+++++++...  +..++||||
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~---~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~--~~~~lv~e~  100 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHT---GKQVAVKKMDLR-KQQRRELLFNEVVIMRDYHHENVVDMYNSYLVG--DELWVVMEF  100 (292)
T ss_pred             hhcccCCCCeEEEEEEECCC---CCEEEEEEEecc-hHHHHHHHHHHHHHHHhCCCCcHHHHHHheecC--CeEEEEEeC
Confidence            36799999999999985433   334445544322 233456788999999999999999999998765  789999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC-
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-  338 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~-  338 (473)
                      +++++|.+++..    ..+++..+..++.||+.||.|||+++   |+||||||+||+++.++.++|+|||++....... 
T Consensus       101 ~~~~~L~~~~~~----~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~  173 (292)
T cd06658         101 LEGGALTDIVTH----TRMNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP  173 (292)
T ss_pred             CCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEccCcchhhcccccc
Confidence            999999998832    35899999999999999999999999   9999999999999999999999999987553221 


Q ss_pred             -ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCC
Q 011995          339 -ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG  417 (473)
Q Consensus       339 -~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  417 (473)
                       .....++..|+|||.+.+..++.++|||||||++|||++|..||...........+...             ..+.+..
T Consensus       174 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~-------------~~~~~~~  240 (292)
T cd06658         174 KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDN-------------LPPRVKD  240 (292)
T ss_pred             cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhc-------------CCCcccc
Confidence             12345788999999998888999999999999999999999999865543322221110             0111111


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       418 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ....+..+.+++.+||..||.+|||+.++++.
T Consensus       241 --~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         241 --SHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             --ccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence              12345678999999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.6e-37  Score=303.22  Aligned_cols=246  Identities=19%  Similarity=0.233  Sum_probs=199.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||++....+   .+.+++++.....  .......+.+|++++++++||||+++++++...  ..
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   75 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGS---GKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDD--SN   75 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcC--Ce
Confidence            4688889999999999999986543   3445555544321  223456788999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++...   ..+++..+..++.|++.||.|||+.+   |+|+||+|.|||++.++.+||+|||++.
T Consensus        76 ~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qil~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~  149 (290)
T cd05580          76 LYLVMEYVPGGELFSHLRKS---GRFPEPVARFYAAQVVLALEYLHSLD---IVYRDLKPENLLLDSDGYIKITDFGFAK  149 (290)
T ss_pred             EEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEeeCCCcc
Confidence            99999999999999998543   46899999999999999999999999   9999999999999999999999999988


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... .....+++.|++||.+.+..++.++||||||+++|+|++|..||...........+...               
T Consensus       150 ~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---------------  213 (290)
T cd05580         150 RVKGR-TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEG---------------  213 (290)
T ss_pred             ccCCC-CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcC---------------
Confidence            76544 34456788999999998888899999999999999999999999765533222111100               


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                         ...++...+..+.+++.+||..||.+|+     +++++++
T Consensus       214 ---~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~  253 (290)
T cd05580         214 ---KVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKN  253 (290)
T ss_pred             ---CccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHc
Confidence               0112334467889999999999999999     7777764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-37  Score=299.62  Aligned_cols=255  Identities=23%  Similarity=0.341  Sum_probs=198.6

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC--
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG--  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~--  249 (473)
                      .+++|+..+.||.|+||.||+|.....   ...+++++...  .......+.+|+.+++++ .|+||+++++++....  
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~~k~~~~--~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~   78 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKT---GQLVAIKIMDI--IEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP   78 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCC---CcEEEEEEEec--CchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC
Confidence            468899999999999999999986543   33444554443  233456789999999999 7999999999987642  


Q ss_pred             --CCceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 --SDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 --~~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                        ...+++||||+++++|.+++.... ....+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~~l~p~ni~~~~~~~~~l~  155 (275)
T cd06608          79 GNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK---VIHRDIKGQNILLTKNAEVKLV  155 (275)
T ss_pred             CcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEEccCCeEEEC
Confidence              356899999999999999885422 2457899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCC--ccCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          327 GYGCAGHIPETD--ISNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       327 DFGla~~~~~~~--~~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |||++.......  .....++..|+|||.+..     ..++.++|||||||++|+|++|..||...........+...  
T Consensus       156 d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--  233 (275)
T cd06608         156 DFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRN--  233 (275)
T ss_pred             CCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhcc--
Confidence            999987653321  233457889999999854     24678999999999999999999999765433222111100  


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                 ..+.+  ..+...+.++.+|+.+||..||.+|||+.++++
T Consensus       234 -----------~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         234 -----------PPPTL--KSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             -----------CCCCC--CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                       00001  112345678999999999999999999999986

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-37  Score=306.69  Aligned_cols=251  Identities=19%  Similarity=0.220  Sum_probs=198.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC--hhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||+|...+   ..+.+++|........  ...+.+..|++++..++|+||+++++++...  ..
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~   75 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKG---TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTE--TY   75 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcC---CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecC--CE
Confidence            368888999999999999998654   3345555555443222  3456789999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|+||||+.+++|.+++... ....+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++.
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~  151 (316)
T cd05574          76 LCLVMDYCPGGELFRLLQRQ-PGKCLSEEVARFYAAEVLLALEYLHLLG---IVYRDLKPENILLHESGHIMLSDFDLSK  151 (316)
T ss_pred             EEEEEEecCCCCHHHHHHhC-CCCccCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChHHeEEcCCCCEEEeecchhh
Confidence            99999999999999998643 3457899999999999999999999999   9999999999999999999999999886


Q ss_pred             ccCCCC-------------------------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCC
Q 011995          333 HIPETD-------------------------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKN  381 (473)
Q Consensus       333 ~~~~~~-------------------------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p  381 (473)
                      ......                               .....++..|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~p  231 (316)
T cd05574         152 QSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTP  231 (316)
T ss_pred             cccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCC
Confidence            542211                               1123567889999999988899999999999999999999999


Q ss_pred             CCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC----HHHHHH
Q 011995          382 LDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT----MRSIFE  450 (473)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt----~~eil~  450 (473)
                      |...........+..                ...........+..+.+++.+||+.||++||+    +.+++.
T Consensus       232 f~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         232 FKGSNRDETFSNILK----------------KEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             CCCCchHHHHHHHhc----------------CCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            987654332221110                00000001125688999999999999999999    777666

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=1.6e-37  Score=301.55  Aligned_cols=251  Identities=23%  Similarity=0.325  Sum_probs=191.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHH-HHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNT-LASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~-l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|++.+.||+|+||.||++....   .++.++++.............+..|+.+ ++.++|+||+++++++..+  ...
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~--~~~   75 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVP---TGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFRE--GDV   75 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcC---CCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecC--CcE
Confidence            478888999999999999998543   3455556655444333344566677775 5667999999999999765  679


Q ss_pred             EEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ++||||++ |+|.+++... .....+++..+..++.||+.||+|||++ +   ++||||||+|||++.++.+||+|||++
T Consensus        76 ~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~---i~h~dlkp~nil~~~~~~~kl~dfg~~  151 (283)
T cd06617          76 WICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS---VIHRDVKPSNVLINRNGQVKLCDFGIS  151 (283)
T ss_pred             EEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecccc
Confidence            99999996 6888877542 2345789999999999999999999997 7   999999999999999999999999998


Q ss_pred             cccCCCCc-cCcccccccCChhhhhc----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChH-HHHhHhhhccccccccc
Q 011995          332 GHIPETDI-SNSSVAAANLSVETLER----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK-EERNLVKWSRPFLADDC  405 (473)
Q Consensus       332 ~~~~~~~~-~~~~~t~~y~aPE~~~~----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~  405 (473)
                      ........ ....++..|+|||.+.+    ..++.++|+|||||++|||++|+.||...... +....+.      .   
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~------~---  222 (283)
T cd06617         152 GYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVV------E---  222 (283)
T ss_pred             cccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHH------h---
Confidence            76643322 23467889999998865    34688999999999999999999999653221 1110000      0   


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          ...+.+.   ...++.++.+++.+||..+|.+||++.+|++
T Consensus       223 ----~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         223 ----EPSPQLP---AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             ----cCCCCCC---ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                0000010   1234678999999999999999999999987

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.6e-37  Score=295.50  Aligned_cols=248  Identities=23%  Similarity=0.329  Sum_probs=196.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC----CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      +|+..+.||+|+||.||+|....+.   ..++++......    .....+.+.+|+++++.++|+||+++++++...  .
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~   75 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDG---DFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREE--D   75 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCC---cEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecC--C
Confidence            4677799999999999999875332   233344433321    233457789999999999999999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++|+||+++++|.+++..   ...+++..+..++.|++.||+|||+.+   |+|+||+|+||+++.++.+||+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~~~ni~~~~~~~~kl~d~~~~  149 (258)
T cd06632          76 NLYIFLELVPGGSLAKLLKK---YGSFPEPVIRLYTRQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMA  149 (258)
T ss_pred             eEEEEEEecCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccc
Confidence            89999999999999999854   235889999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....... .....++..|++||.+.... ++.++|+|||||++|+|++|+.||...........+...            
T Consensus       150 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~------------  217 (258)
T cd06632         150 KQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRS------------  217 (258)
T ss_pred             eeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhc------------
Confidence            7654332 23456788899999997766 899999999999999999999999765432222111100            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          .....++..++..+.+++.+||+.+|.+||++.+++.
T Consensus       218 ----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         218 ----KELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             ----ccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence                0001123445688899999999999999999999985

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2.1e-37  Score=300.91  Aligned_cols=263  Identities=19%  Similarity=0.283  Sum_probs=199.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +|+..+.||.|++|.||+|+...+   +..+++++............+.+|++++++++|+||+++++++...  +..++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~l   75 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTT---GEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTE--NKLML   75 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCC---CeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeC--CcEEE
Confidence            578889999999999999996443   3455666665544444456788999999999999999999999876  78899


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+++ +|.+++........+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++....
T Consensus        76 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~  151 (284)
T cd07836          76 VFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENR---VLHRDLKPQNLLINKRGELKLADFGLARAFG  151 (284)
T ss_pred             EEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCcEEEeecchhhhhc
Confidence            9999975 89888865443456899999999999999999999999   9999999999999999999999999987553


Q ss_pred             CC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hh-cccccccccccccc
Q 011995          336 ET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KW-SRPFLADDCRLSLI  410 (473)
Q Consensus       336 ~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~  410 (473)
                      ..  ......++..|++||.+.+. .++.++|||||||++|+|++|..||.+....+....+ .. ..+.. .  ....+
T Consensus       152 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~  228 (284)
T cd07836         152 IPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTE-S--TWPGI  228 (284)
T ss_pred             CCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCCh-h--hHHHH
Confidence            22  12334567889999998664 4789999999999999999999999876544332211 11 00000 0  00000


Q ss_pred             cc-cccC-----------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MD-PQLK-----------GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~-~~l~-----------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .+ +.+.           ..+....+..+.+++.+||+.||.+||++.++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         229 SQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00 0000           0111234678899999999999999999999985

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.3e-37  Score=305.04  Aligned_cols=245  Identities=20%  Similarity=0.317  Sum_probs=194.1

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      ....||+|+||.||++....   ....+++++..... ....+.+.+|+.++..++||||+++++++..+  +..++|||
T Consensus        25 ~~~~ig~g~~g~v~~~~~~~---~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~--~~~~iv~e   98 (297)
T cd06659          25 NYIKIGEGSTGIVCIAREKH---SGRQVAVKMMDLRK-QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVG--EELWVLME   98 (297)
T ss_pred             hhhhcCCCCceeEEEEEEcC---CCCEEEEEEEEecc-cchHHHHHHHHHHHHhCCCCchhhhhhheeeC--CeEEEEEe
Confidence            34689999999999998543   23344555544332 23356788999999999999999999998765  78999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD  338 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~  338 (473)
                      |+++++|..++..    ..+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++.......
T Consensus        99 ~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~  171 (297)
T cd06659          99 FLQGGALTDIVSQ----TRLNEEQIATVCESVLQALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV  171 (297)
T ss_pred             cCCCCCHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHeEEccCCcEEEeechhHhhccccc
Confidence            9999999988732    35899999999999999999999999   9999999999999999999999999987554322


Q ss_pred             --ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccC
Q 011995          339 --ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK  416 (473)
Q Consensus       339 --~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  416 (473)
                        .....++..|+|||++.+..++.++|||||||++|||++|..||...........+....             .... 
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-------------~~~~-  237 (297)
T cd06659         172 PKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSP-------------PPKL-  237 (297)
T ss_pred             ccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccC-------------CCCc-
Confidence              233467889999999988889999999999999999999999997655433322221100             0000 


Q ss_pred             CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       417 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       ......+..+.+++.+||+.+|.+||++.+|++.
T Consensus       238 -~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         238 -KNAHKISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             -cccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence             0122345678999999999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=3e-37  Score=299.14  Aligned_cols=246  Identities=22%  Similarity=0.344  Sum_probs=198.0

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |+..+.||+|+||.||+|....+   ...+++++............+.+|+.++.+++|+||+++++++..+  +..++|
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv   80 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRT---QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD--TKLWII   80 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCC---CcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeC--CeEEEE
Confidence            55668999999999999985443   3445555544443344556788999999999999999999998766  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++++|.+++..    ..+++..+..++.|++.+|.|||+.+   ++|+||+|+||+++.++.++|+|||++.....
T Consensus        81 ~e~~~~~~l~~~i~~----~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06641          81 MEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTD  153 (277)
T ss_pred             EEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHccCC---eecCCCCHHhEEECCCCCEEEeecccceeccc
Confidence            999999999999842    35899999999999999999999999   99999999999999999999999999876543


Q ss_pred             CC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          337 TD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       337 ~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      ..  .....++..|++||.+.+..++.++|||||||++|+|++|..||...........+...                 
T Consensus       154 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-----------------  216 (277)
T cd06641         154 TQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKN-----------------  216 (277)
T ss_pred             chhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcC-----------------
Confidence            32  12335678899999998888899999999999999999999999765433222211100                 


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ....++..++.++.+++.+||+.+|.+||++.++++.
T Consensus       217 ~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         217 NPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             CCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            0011233456788999999999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=2.9e-37  Score=295.00  Aligned_cols=250  Identities=18%  Similarity=0.240  Sum_probs=199.5

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||+|+||.||++...+   ....++++...... .......+.+|+++++.++|+||+++++++...  +..+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~---~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~   75 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKA---DQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLED--KALM   75 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcC---CCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecC--CEEE
Confidence            47788999999999999998644   33445555554332 334467789999999999999999999988755  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++... ....+++..+..++.+++.+|.|||+++   ++|+||+|+||+++.+ +.+||+|||++..
T Consensus        76 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~~l~d~~~~~~  151 (256)
T cd08220          76 IVMEYAPGGTLAEYIQKR-CNSLLDEDTILHFFVQILLALHHVHTKL---ILHRDLKTQNILLDKHKMVVKIGDFGISKI  151 (256)
T ss_pred             EEEecCCCCCHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEccCCCcee
Confidence            999999999999999653 2445899999999999999999999999   9999999999999855 5689999999987


Q ss_pred             cCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...... ....++..|+|||.+.+..++.++||||||+++|+|++|..||...........+....              
T Consensus       152 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------------  217 (256)
T cd08220         152 LSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGT--------------  217 (256)
T ss_pred             cCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcC--------------
Confidence            654322 23456789999999988889999999999999999999999997765433222111100              


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ...++...+..+.+++.+||..||++|||+.++++.
T Consensus       218 ---~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         218 ---FAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             ---CCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence               011233456789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.4e-37  Score=297.76  Aligned_cols=251  Identities=20%  Similarity=0.335  Sum_probs=197.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-----ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-----SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      +|+..+.||+|+||.||+|...   .....+++++......     ......+.+|+.++++++|+||+++++++.+.  
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~---~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--   75 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDV---KTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCED--   75 (268)
T ss_pred             CccccceecCcCceEEEEEEEc---CCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccC--
Confidence            5788899999999999999843   3345566666553321     12356789999999999999999999998765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYG  329 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFG  329 (473)
                      +..++||||+++++|.+++..   ...+++..+..++.|++.||.|||+++   ++|+||+|+||+++.++ .+||+|||
T Consensus        76 ~~~~~v~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~ql~~al~~LH~~~---i~H~~i~~~nil~~~~~~~~~l~dfg  149 (268)
T cd06630          76 SHFNLFVEWMAGGSVSHLLSK---YGAFKEAVIINYTEQLLRGLSYLHENQ---IIHRDVKGANLLIDSTGQRLRIADFG  149 (268)
T ss_pred             CeEEEEEeccCCCcHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEcccc
Confidence            789999999999999999854   346899999999999999999999999   99999999999998775 59999999


Q ss_pred             CCcccCCCCc------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          330 CAGHIPETDI------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       330 la~~~~~~~~------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      ++........      ....++..|+|||.+.+..++.++|||||||++++|++|..||...........+....     
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-----  224 (268)
T cd06630         150 AAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIA-----  224 (268)
T ss_pred             cccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHh-----
Confidence            9876643211      12356789999999988889999999999999999999999997543222111111000     


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                              .......++...+.++.+++.+||..+|++||++.++++
T Consensus       225 --------~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         225 --------SATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             --------ccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence                    001112235566788999999999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.8e-37  Score=305.16  Aligned_cols=254  Identities=17%  Similarity=0.189  Sum_probs=196.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||++.....   .+.++++......  .......+.+|+++++.++|+||+++++.+..+  +.
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~---~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~   75 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKET---RQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETK--RH   75 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCC---CcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecC--CE
Confidence            4788889999999999999986543   3444455443321  123345788999999999999999999988765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..   ...+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++
T Consensus        76 ~~lv~e~~~g~~L~~~l~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~NIll~~~~~~~l~dfg~~~  149 (305)
T cd05609          76 LCMVMEYVEGGDCATLLKN---IGALPVDMARMYFAETVLALEYLHNYG---IVHRDLKPDNLLITSMGHIKLTDFGLSK  149 (305)
T ss_pred             EEEEEecCCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHEEECCCCCEEEeeCCCcc
Confidence            9999999999999999954   246899999999999999999999998   9999999999999999999999999886


Q ss_pred             ccCCC-----------------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          333 HIPET-----------------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       333 ~~~~~-----------------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      .....                 ......++..|+|||.+.+..++.++|||||||++|||++|..||.+....+....+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~  229 (305)
T cd05609         150 IGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVI  229 (305)
T ss_pred             ccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            42100                 0012345778999999988889999999999999999999999998655433222211


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      ...           ...+..    ....+.++.+++.+||+.||++||++.++++.|+.
T Consensus       230 ~~~-----------~~~~~~----~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         230 SDD-----------IEWPEG----DEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             hcc-----------cCCCCc----cccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            110           000000    11355778999999999999999997777766665

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=8.9e-39  Score=295.09  Aligned_cols=280  Identities=18%  Similarity=0.174  Sum_probs=201.1

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccceeeee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHA  246 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~  246 (473)
                      +-++....|+....||+|+||.||+|.-.+... -.+.+++|...-... ...-....+|+.+++.++|||||.|..++.
T Consensus        18 ~rve~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl   97 (438)
T KOG0666|consen   18 ERVEDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFL   97 (438)
T ss_pred             hhHHHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHh
Confidence            334556678999999999999999996443322 123344443332222 223466889999999999999999999887


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhc--CCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC----
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYG--RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD----  320 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~--~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~----  320 (473)
                      .. ...++|++||.++ +|..+|+-  ......++...+..|+.||+.|+.|||++.   |+||||||.|||+..+    
T Consensus        98 ~~-d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgper  172 (438)
T KOG0666|consen   98 SH-DKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPER  172 (438)
T ss_pred             cc-CceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCcc
Confidence            64 3789999999977 88888743  233467899999999999999999999999   9999999999999877    


Q ss_pred             CcEEEeccCCCcccCCC-----CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHH-----
Q 011995          321 FSAKLSGYGCAGHIPET-----DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-----  389 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~-----~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-----  389 (473)
                      |.|||+|||+++.+.+.     .....++|++|.|||.+.|.. |+.+.|||++|||+.||+|-++.|.+...+.     
T Consensus       173 G~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~P  252 (438)
T KOG0666|consen  173 GRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNP  252 (438)
T ss_pred             CeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCC
Confidence            99999999999987543     234568899999999998876 9999999999999999999999997654321     


Q ss_pred             ----HHhHhhhc--------cccccccccccc-ccccccCCCCC----------HHHHHHHHHHHHHhcccCCCCCCCHH
Q 011995          390 ----ERNLVKWS--------RPFLADDCRLSL-IMDPQLKGRFP----------LKAARTVADIALRCLQKEPSERPTMR  446 (473)
Q Consensus       390 ----~~~~~~~~--------~~~~~~~~~~~~-~~~~~l~~~~~----------~~~~~~l~~li~~cl~~dP~~RPt~~  446 (473)
                          +.+.|...        +|.+........ +.+-+.....+          ..-+....+|+.++|..||-+|.|++
T Consensus       253 fq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~  332 (438)
T KOG0666|consen  253 FQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAE  332 (438)
T ss_pred             chHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHH
Confidence                11111100        011110000000 00000000000          01123478999999999999999999


Q ss_pred             HHHHHHH
Q 011995          447 SIFEELD  453 (473)
Q Consensus       447 eil~~L~  453 (473)
                      +.++..=
T Consensus       333 qAleh~y  339 (438)
T KOG0666|consen  333 QALEHPY  339 (438)
T ss_pred             HHhcccc
Confidence            9887643

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=3.5e-37  Score=294.73  Aligned_cols=250  Identities=18%  Similarity=0.259  Sum_probs=200.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||+|+||.||.+....+   .+.++++..... .......++.+|+.+++.++|+||+++++++...  +..+
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   75 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKED---GKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEEN--GNLY   75 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCC---CCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCC--CeEE
Confidence            477889999999999999986443   344555554432 2334456889999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+++|.+++... ....+++..+..++.|++.||.|||+.+   ++|+||+|+|||++.++.++|+|||++...
T Consensus        76 lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~l~~~nil~~~~~~~~l~d~~~~~~~  151 (256)
T cd08218          76 IVMDYCEGGDLYKKINAQ-RGVLFPEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTIKLGDFGIARVL  151 (256)
T ss_pred             EEEecCCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEEeeccceeec
Confidence            999999999999988543 2345789999999999999999999998   999999999999999999999999999766


Q ss_pred             CCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .....  ....++..|+|||++.+..++.++|||||||++++|++|..||......+....+....              
T Consensus       152 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~--------------  217 (256)
T cd08218         152 NSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGS--------------  217 (256)
T ss_pred             CcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCC--------------
Confidence            44322  22356788999999988889999999999999999999999997655433222111000              


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ....+...+.++.++|.+||+.+|++||++.+|++.
T Consensus       218 ---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         218 ---YPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             ---CCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence               011233456789999999999999999999999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2.4e-37  Score=298.16  Aligned_cols=255  Identities=13%  Similarity=0.241  Sum_probs=198.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC---------CCChhhHhHHHHHHHHHh-CCCCCcccceeee
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN---------PSSQGVKEFINDVNTLAS-LQHPNLCKLLGFH  245 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~Ei~~l~~-l~HpnIv~l~g~~  245 (473)
                      +|+..+.||+|+||.||+|....+  ..+.++++.....         .......++.+|+.++.+ ++|+||+++++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~--~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~   78 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNN--GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTF   78 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCC--CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeE
Confidence            477789999999999999997652  1234444443322         122334567889998875 7999999999998


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcE
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      ..+  +..++||||+++++|.+++... .....+++..+..++.|++.||.|||+ .+   ++|+||+|+|||++.++.+
T Consensus        79 ~~~--~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~---i~H~dl~~~nil~~~~~~~  153 (269)
T cd08528          79 LEN--DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR---IVHRDLTPNNIMLGEDDKV  153 (269)
T ss_pred             ccC--CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc---eeecCCCHHHEEECCCCcE
Confidence            766  7899999999999999887432 234568999999999999999999996 56   9999999999999999999


Q ss_pred             EEeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc
Q 011995          324 KLSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       324 kl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      +|+|||++...... ......++..|++||.+.+..++.++||||||+++|||++|..||...........+....    
T Consensus       154 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~----  229 (269)
T cd08528         154 TITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAV----  229 (269)
T ss_pred             EEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhcc----
Confidence            99999999776544 2234467889999999998889999999999999999999999997654433222111000    


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                              ..+.    .....+..+.+++.+||+.||++||++.|+..+|.
T Consensus       230 --------~~~~----~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         230 --------YEPL----PEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             --------CCcC----CcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence                    0000    01134578899999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.8e-37  Score=301.74  Aligned_cols=267  Identities=19%  Similarity=0.235  Sum_probs=199.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||.|+||.||+|....+.   +.++++..+... .......+.+|+.++.+++||||+++++++.....+..
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~   81 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTG---EIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKI   81 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCC---cEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcE
Confidence            57888899999999999999975433   334444444332 22233467789999999999999999999876655789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+||||+. ++|.+++...  ...+++..+..++.||+.||+|||+.+   ++|+||||+|||++.++.+||+|||++..
T Consensus        82 ~lv~e~~~-~~L~~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~~l~d~g~~~~  155 (293)
T cd07843          82 YMVMEYVE-HDLKSLMETM--KQPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLARE  155 (293)
T ss_pred             EEEehhcC-cCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCcEEEeecCceee
Confidence            99999996 5999888543  236899999999999999999999999   99999999999999999999999999886


Q ss_pred             cCCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh--cccc------c-
Q 011995          334 IPET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW--SRPF------L-  401 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~--~~~~------~-  401 (473)
                      ....  ......++..|+|||.+.+.. ++.++||||||+++|||++|.+||...........+..  ..+.      . 
T Consensus       156 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (293)
T cd07843         156 YGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFS  235 (293)
T ss_pred             ccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhh
Confidence            6443  223345678899999987644 68999999999999999999999987655443322210  0000      0 


Q ss_pred             ----ccccccccccccccCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          402 ----ADDCRLSLIMDPQLKGRFPLK-AARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       402 ----~~~~~~~~~~~~~l~~~~~~~-~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          .............+...++.. .+..+.++|.+||+.||++|||+.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         236 ELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             ccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                000000011111122223333 5778999999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=1.4e-37  Score=302.19  Aligned_cols=264  Identities=17%  Similarity=0.203  Sum_probs=192.3

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||+|+||.||+|....+   ++.++++...... .......+.+|++++++++|+||+++++++.+.  ...+
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~---g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRET---HEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSD--KKLT   75 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCC---CcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccC--CceE
Confidence            477789999999999999986543   3344555544332 222345678899999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+. ++|.+++...  ...+++..+..++.||+.||.|||+.+   |+|+||||+||+++.++.+||+|||++...
T Consensus        76 lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  149 (284)
T cd07839          76 LVFEYCD-QDLKKYFDSC--NGDIDPEIVKSFMFQLLKGLAFCHSHN---VLHRDLKPQNLLINKNGELKLADFGLARAF  149 (284)
T ss_pred             EEEecCC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEcCCCcEEECccchhhcc
Confidence            9999996 5888877532  346899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChH-HHHhHhhhccccccccc--ccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPK-EERNLVKWSRPFLADDC--RLS  408 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~--~~~  408 (473)
                      ...  ......++..|+|||.+.+.. ++.++|||||||++|||++|..||...... .....+...........  ...
T Consensus       150 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (284)
T cd07839         150 GIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVS  229 (284)
T ss_pred             CCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhh
Confidence            332  223345678999999987654 789999999999999999998886433322 21111100000000000  000


Q ss_pred             cccc----cccC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          409 LIMD----PQLK-----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       409 ~~~~----~~l~-----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...+    +...     .......+.++.+++.+||+.||.+|||+.++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         230 KLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             hcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            0000    0000     0112245678999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=3.8e-37  Score=295.49  Aligned_cols=250  Identities=23%  Similarity=0.389  Sum_probs=196.3

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|+||.||+|....+   .+.+++++...... ......+.+|+++++.++|+||+++++++...  +..+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~   75 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDT---GELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHR--EKVY   75 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCC---CcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecC--CEEE
Confidence            477789999999999999986443   34455555554432 24567899999999999999999999988665  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+++++|.+++..   ...+++..+..++.+++.||.|||+.+   |+|+||+|+||+++.++.+||+|||++...
T Consensus        76 lv~e~~~~~~L~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~kl~d~g~~~~~  149 (264)
T cd06626          76 IFMEYCSGGTLEELLEH---GRILDEHVIRVYTLQLLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVKL  149 (264)
T ss_pred             EEEecCCCCcHHHHHhh---cCCCChHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccccccccc
Confidence            99999999999999853   345889999999999999999999999   999999999999999999999999998776


Q ss_pred             CCCCc------cCcccccccCChhhhhcCC---CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          335 PETDI------SNSSVAAANLSVETLERGL---LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       335 ~~~~~------~~~~~t~~y~aPE~~~~~~---~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      .....      ....++..|++||++.+..   ++.++||||||+++|||++|+.||............   ..      
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~---~~------  220 (264)
T cd06626         150 KNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFH---VG------  220 (264)
T ss_pred             CCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHH---Hh------
Confidence            43321      1235678999999998766   889999999999999999999999765322211100   00      


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         ....+.+..  ...++..+.+++.+||+.+|.+||++.+++.
T Consensus       221 ---~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         221 ---AGHKPPIPD--SLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             ---cCCCCCCCc--ccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence               000111110  1234677889999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=1.3e-37  Score=302.64  Aligned_cols=265  Identities=17%  Similarity=0.248  Sum_probs=196.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|...++.   +.+++++..... .....+.+.+|+++++.++|+||+++++++..+  ...
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~---~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   75 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETG---QIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRK--KRL   75 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCC---CEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccC--CeE
Confidence            46888899999999999999975432   334444433222 223456788999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|..+...   ...+++..+..++.||+.||.|||+.+   ++|+||+|+||+++.++.++|+|||++..
T Consensus        76 ~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~h~~l~p~ni~~~~~~~~~l~dfg~~~~  149 (286)
T cd07846          76 YLVFEFVDHTVLDDLEKY---PNGLDESRVRKYLFQILRGIEFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFART  149 (286)
T ss_pred             EEEEecCCccHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCcEEEEeeeeeee
Confidence            999999999999887643   235899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCC--ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh-ccccccc------
Q 011995          334 IPETD--ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW-SRPFLAD------  403 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~-~~~~~~~------  403 (473)
                      .....  .....++..|+|||++.+. .++.++|||||||++|||++|.+||......+....+.. ...+...      
T Consensus       150 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (286)
T cd07846         150 LAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQ  229 (286)
T ss_pred             ccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhc
Confidence            54322  2334567899999998653 478899999999999999999999976554332221111 0000000      


Q ss_pred             -ccccccccccccCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 -DCRLSLIMDPQLKG-----RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 -~~~~~~~~~~~l~~-----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .........+....     .....++..+.+|+.+||+.+|++||++.++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         230 KNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             cchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence             00000000000000     001245678999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-37  Score=295.49  Aligned_cols=250  Identities=18%  Similarity=0.251  Sum_probs=199.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC----CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .+|...+.||+|+||.||+|....   ..+.++++......    .......+.+|++++++++|+||+++++++.+...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~---~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~   78 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDAD---TGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEE   78 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcC---CCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCC
Confidence            478889999999999999998543   34455565544321    23345678899999999999999999999876544


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ..+++|+||+++++|.+++...   ..+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||+
T Consensus        79 ~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~  152 (264)
T cd06653          79 KKLSIFVEYMPGGSIKDQLKAY---GALTENVTRRYTRQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGA  152 (264)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcccc
Confidence            6789999999999999998532   35889999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC-----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPET-----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ++.....     ......++..|+|||.+.+..++.++|||||||++|||++|+.||.............          
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~----------  222 (264)
T cd06653         153 SKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIA----------  222 (264)
T ss_pred             ccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHH----------
Confidence            8765321     1123457789999999988889999999999999999999999997654333221111          


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                            .......++...+..+.+++.+||+ ++..||++.+++.
T Consensus       223 ------~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         223 ------TQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             ------cCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence                  0111123456677889999999999 5799999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=2.9e-37  Score=300.00  Aligned_cols=265  Identities=19%  Similarity=0.270  Sum_probs=198.9

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|++.+.||+|+||.||+|....+   ++.+++++..... .......+.+|+.++++++|+||+++++++...  ...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~   75 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRET---GETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHG--SGFV   75 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCC---CceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecC--CeeE
Confidence            477889999999999999986543   3444455544432 233456789999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+ +++|.+++...  ...+++..+..++.||+.||+|||+.+   ++|+||||+||+++.++.++|+|||++...
T Consensus        76 ~v~e~~-~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~  149 (286)
T cd07832          76 LVMEYM-PSDLSEVLRDE--ERPLPEAQVKSYMRMLLKGVAYMHANG---IMHRDLKPANLLISADGVLKIADFGLARLF  149 (286)
T ss_pred             EEeccc-CCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCHHHEEEcCCCcEEEeeeeecccc
Confidence            999999 99999998543  356999999999999999999999999   999999999999999999999999998876


Q ss_pred             CCCC---ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh--ccc------ccc
Q 011995          335 PETD---ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW--SRP------FLA  402 (473)
Q Consensus       335 ~~~~---~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~--~~~------~~~  402 (473)
                      ....   .....++..|+|||.+.+.. ++.++|||||||+++||++|.++|...........+..  ..+      ...
T Consensus       150 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (286)
T cd07832         150 SEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLT  229 (286)
T ss_pred             cCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhcc
Confidence            5432   34456788999999986544 68999999999999999999988876654332221110  000      000


Q ss_pred             cccccccccccccC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 DDCRLSLIMDPQLK----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ~~~~~~~~~~~~l~----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +......+..+...    .....+.+..+.+++.+||..||.+||+++++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         230 SLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             CcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            00000000000000    00112345889999999999999999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-37  Score=300.84  Aligned_cols=265  Identities=17%  Similarity=0.225  Sum_probs=193.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|++|.||+|....+   .+.+++|.............+.+|+++++.++|+||+++++++.++  +..+
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~   79 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLT---GQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTK--KTLT   79 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCC---CcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecC--CeEE
Confidence            5788889999999999999985433   3445566554433333345677899999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+ +|.+++...  ...+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.+||+|||++...
T Consensus        80 lv~e~~~~-~L~~~~~~~--~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  153 (291)
T cd07844          80 LVFEYLDT-DLKQYMDDC--GGGLSMHNVRLFLFQLLRGLAYCHQRR---VLHRDLKPQNLLISERGELKLADFGLARAK  153 (291)
T ss_pred             EEEecCCC-CHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCHHHEEEcCCCCEEECcccccccc
Confidence            99999974 999988543  236899999999999999999999999   999999999999999999999999998654


Q ss_pred             CCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChH-HHHhHhhhccccccccc-----
Q 011995          335 PET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK-EERNLVKWSRPFLADDC-----  405 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~-----  405 (473)
                      ...  ......++..|+|||.+.+ ..++.++|||||||++|||++|..||...... +....+...........     
T Consensus       154 ~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (291)
T cd07844         154 SVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVS  233 (291)
T ss_pred             CCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhh
Confidence            321  1223346788999999865 45889999999999999999999999765421 11111100000000000     


Q ss_pred             --------ccccccccccCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 --------RLSLIMDPQLKGRFP-LKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 --------~~~~~~~~~l~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                              .........+....+ .....++.+++.+||+.||.+|||+.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         234 SNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             hccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                    000000000000000 011267889999999999999999999885

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=4.1e-37  Score=295.07  Aligned_cols=252  Identities=20%  Similarity=0.300  Sum_probs=203.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||.|++|.||+|+..+   ..+.+++++............+.+|+..+.+++|+||+++++++...  ...+
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~---~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   75 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKP---TGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKE--GEIS   75 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcC---CCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccC--CeEE
Confidence            468888999999999999998654   33455555555443334567899999999999999999999998766  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++...   ..+++..+..++.|++.||.|||+ .+   ++|+||+|+||+++.++.++|+|||++..
T Consensus        76 lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lh~~~~---~~H~~l~~~ni~~~~~~~~~l~df~~~~~  149 (264)
T cd06623          76 IVLEYMDGGSLADLLKKV---GKIPEPVLAYIARQILKGLDYLHTKRH---IIHRDIKPSNLLINSKGEVKIADFGISKV  149 (264)
T ss_pred             EEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhccCC---CccCCCCHHHEEECCCCCEEEccCcccee
Confidence            999999999999999543   568999999999999999999999 98   99999999999999999999999999887


Q ss_pred             cCCCCcc--CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPETDIS--NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~~~--~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .......  ...++..|+|||.+.+..++.++||||||+++|+|++|..||.............+..             
T Consensus       150 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~-------------  216 (264)
T cd06623         150 LENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAIC-------------  216 (264)
T ss_pred             cccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHh-------------
Confidence            6543322  3456789999999998889999999999999999999999997764211111121111             


Q ss_pred             ccccCCCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLK-AARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~-~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ... ....+.. .+..+.+++.+||..+|++||++.++++.
T Consensus       217 ~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         217 DGP-PPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             cCC-CCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            000 0111223 56889999999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-37  Score=297.73  Aligned_cols=248  Identities=21%  Similarity=0.330  Sum_probs=196.9

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC---CCCcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ---HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~~~~~~~~  252 (473)
                      .|+..+.||+|+||.||+|....+   .+.+++++...........++.+|+.+++.++   |+|++++++++...  ..
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~--~~   76 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPT---GRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKG--PR   76 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCC---CcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeC--CE
Confidence            477779999999999999986433   34555665554444455677889999999996   99999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..    ..+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.
T Consensus        77 ~~lv~e~~~~~~L~~~~~~----~~l~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06917          77 LWIIMEYAEGGSVRTLMKA----GPIAEKYISVIIREVLVALKYIHKVG---VIHRDIKAANILVTNTGNVKLCDFGVAA  149 (277)
T ss_pred             EEEEEecCCCCcHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHHEEEcCCCCEEEccCCcee
Confidence            9999999999999998843    26899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCC--ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          333 HIPETD--ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       333 ~~~~~~--~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......  .....++..|+|||.+.++ .++.++|||||||++|+|++|..||...........+.             .
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~-------------~  216 (277)
T cd06917         150 LLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIP-------------K  216 (277)
T ss_pred             ecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccc-------------c
Confidence            664432  2334577889999998754 46899999999999999999999997654332211110             0


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+.+..   ...+.++.+++.+||..||++||++.++++.
T Consensus       217 ~~~~~~~~---~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         217 SKPPRLED---NGYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             CCCCCCCc---ccCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            00111111   1245789999999999999999999999874

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=346.03  Aligned_cols=254  Identities=21%  Similarity=0.335  Sum_probs=205.0

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG  249 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~  249 (473)
                      ...+-+|+.+..||.|.||.||.|...   .++...++|-+++.. .......+.+|+.++..+.|||+|++||+-... 
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~---~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHR- 1306 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNL---DTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHR- 1306 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecC---CccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecH-
Confidence            345677889999999999999999844   444555555555543 344567889999999999999999999987765 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       +.++|.||||.+|+|.+.+.   .+...++.....+..|++.|+.|||++|   ||||||||+||||+.+|.+|++|||
T Consensus      1307 -ekv~IFMEyC~~GsLa~ll~---~gri~dE~vt~vyt~qll~gla~LH~~g---IVHRDIK~aNI~Ld~~g~iK~~DFG 1379 (1509)
T KOG4645|consen 1307 -EKVYIFMEYCEGGSLASLLE---HGRIEDEMVTRVYTKQLLEGLAYLHEHG---IVHRDIKPANILLDFNGLIKYGDFG 1379 (1509)
T ss_pred             -HHHHHHHHHhccCcHHHHHH---hcchhhhhHHHHHHHHHHHHHHHHHhcC---ceecCCCccceeeecCCcEEeeccc
Confidence             78999999999999999993   4556778888889999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC------CccCcccccccCChhhhhcCC---CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          330 CAGHIPET------DISNSSVAAANLSVETLERGL---LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       330 la~~~~~~------~~~~~~~t~~y~aPE~~~~~~---~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      .|..+.+.      ......||+.|||||++.+..   -..++||||+|||++||+||+.||...+..       |+.-+
T Consensus      1380 sa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne-------~aIMy 1452 (1509)
T KOG4645|consen 1380 SAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNE-------WAIMY 1452 (1509)
T ss_pred             ceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccch-------hHHHh
Confidence            99876443      124557899999999997643   457899999999999999999999765432       21111


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           .    +...-.+++|...+.+-.+|+..||+.||.+|.++.|+++.
T Consensus      1453 -----~----V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1453 -----H----VAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEH 1494 (1509)
T ss_pred             -----H----HhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHh
Confidence                 1    11112234577899999999999999999999999877754

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=5.3e-37  Score=296.29  Aligned_cols=253  Identities=19%  Similarity=0.326  Sum_probs=194.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC---------ChhhHhHHHHHHHHHhCCCCCcccceeeee
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS---------SQGVKEFINDVNTLASLQHPNLCKLLGFHA  246 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~  246 (473)
                      +|...+.||.|+||.||+|....+   +..++++..+....         ....+.+.+|+.+++.++|+||+++++++.
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~---~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   78 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTT---GEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFET   78 (272)
T ss_pred             ceeecceecccCceEEEEEeecCC---CceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEec
Confidence            467789999999999999985433   33444554432211         112346788999999999999999999987


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                      ..  +..++||||+++++|.+++...   ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+
T Consensus        79 ~~--~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~~~nil~~~~~~~~l~  150 (272)
T cd06629          79 TE--EYLSIFLEYVPGGSIGSCLRTY---GRFEEQLVRFFTEQVLEGLAYLHSKG---ILHRDLKADNLLVDADGICKIS  150 (272)
T ss_pred             cC--CceEEEEecCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHhhCC---eeecCCChhhEEEcCCCeEEEe
Confidence            65  7899999999999999998543   46899999999999999999999998   9999999999999999999999


Q ss_pred             ccCCCcccCCC----CccCcccccccCChhhhhcCC--CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          327 GYGCAGHIPET----DISNSSVAAANLSVETLERGL--LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       327 DFGla~~~~~~----~~~~~~~t~~y~aPE~~~~~~--~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      |||++......    ......++..|++||.+....  ++.++||||||+++|||++|..||.............     
T Consensus       151 d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~-----  225 (272)
T cd06629         151 DFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLG-----  225 (272)
T ss_pred             eccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhh-----
Confidence            99998765322    112335678999999987654  7899999999999999999999997544332211100     


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       ..  .    ....+.......++..+.+++.+||..||.+||++.+|++.
T Consensus       226 -~~--~----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         226 -NK--R----SAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             -cc--c----cCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence             00  0    01111111223456889999999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=3.9e-37  Score=301.26  Aligned_cols=259  Identities=14%  Similarity=0.157  Sum_probs=185.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhh----------HhHHHHHHHHHhCCCCCcccceee
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV----------KEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      +.|.+.+.||+|+||.||+|...++....+.+++++..........          .....+...+..+.|+||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            5799999999999999999997665333344444444333221111          112234445666789999999987


Q ss_pred             eecCCC--CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc
Q 011995          245 HARDGS--DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS  322 (473)
Q Consensus       245 ~~~~~~--~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~  322 (473)
                      +.....  ...++++|++. .++.+.+..   ....++..+..++.|++.||+|||+.+   |+||||||+|||++.++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiHrDiKp~Nill~~~~~  164 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV-ENTKEIFKR---IKCKNKKLIKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNR  164 (294)
T ss_pred             eeEecCCceEEEEEEehhc-cCHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCc
Confidence            654321  13467777763 366666632   224678889999999999999999998   999999999999999999


Q ss_pred             EEEeccCCCcccCCC---------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-Hh
Q 011995          323 AKLSGYGCAGHIPET---------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RN  392 (473)
Q Consensus       323 vkl~DFGla~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~  392 (473)
                      ++|+|||+++.+...         ......+|+.|+|||++.+..++.++|||||||++|||++|..||........ ..
T Consensus       165 ~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~  244 (294)
T PHA02882        165 GYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIH  244 (294)
T ss_pred             EEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHH
Confidence            999999999765321         11223688999999999999999999999999999999999999986632221 11


Q ss_pred             H--hhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          393 L--VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       393 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .  ..+...          +....+   .....+..+.+++..||..+|++||++.+|++.|+
T Consensus       245 ~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        245 AAKCDFIKR----------LHEGKI---KIKNANKFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             HhHHHHHHH----------hhhhhh---ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence            1  111000          000000   01234578999999999999999999999998764

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-38  Score=287.16  Aligned_cols=252  Identities=16%  Similarity=0.253  Sum_probs=203.5

Q ss_pred             HhcccccC-cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeec--C
Q 011995          173 ACHNFFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHAR--D  248 (473)
Q Consensus       173 ~~~~f~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~--~  248 (473)
                      .+++|.+. .+||-|-.|.|-.+.   +..++.++++|+.+      .....++|+++.-.. .|||||.++++|..  .
T Consensus        59 itedY~is~qvLG~GinGkV~~C~---~k~T~ekfALKvL~------Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~  129 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCV---HKRTQEKFALKVLL------DSPKARREVELHWMASGHPHIVSIIDVYENSYQ  129 (400)
T ss_pred             chhhheehhhhhccccCCceEEEE---eccchhhhHHHHHh------cCHHHHhHhhhhhhhcCCCceEEeehhhhhhcc
Confidence            56777654 689999999999998   55567777777654      235567899987766 79999999998864  3


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC---CCCcEEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKL  325 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~---~~~~vkl  325 (473)
                      +..++.+|||.|+||.|+..+..+ ....|++.++..|+.||..|+.|||+.+   |.||||||+|+|..   .|..+||
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~-g~~afTErea~eI~~qI~~Av~~lH~~n---IAHRDlKpENLLyt~t~~na~lKL  205 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDR-GDQAFTEREASEIMKQIGLAVRYLHSMN---IAHRDLKPENLLYTTTSPNAPLKL  205 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHc-ccccchHHHHHHHHHHHHHHHHHHHhcc---hhhccCChhheeeecCCCCcceEe
Confidence            457889999999999999999765 4567999999999999999999999999   99999999999996   4567999


Q ss_pred             eccCCCcccC-CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh----HHHHhHhhhcccc
Q 011995          326 SGYGCAGHIP-ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP----KEERNLVKWSRPF  400 (473)
Q Consensus       326 ~DFGla~~~~-~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~----~~~~~~~~~~~~~  400 (473)
                      +|||+|+... .....+.+.|+.|.|||++...+|+...|+||+||++|-|++|.+||...+.    ..+...|.-..- 
T Consensus       206 tDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy-  284 (400)
T KOG0604|consen  206 TDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQY-  284 (400)
T ss_pred             cccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCc-
Confidence            9999998765 4456777899999999999999999999999999999999999999965432    111111111000 


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                   .+...-...+++.+.++|+.+|..+|.+|.|+.+++..
T Consensus       285 -------------~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  285 -------------EFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             -------------cCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence                         01111135788999999999999999999999999864

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=4.2e-37  Score=300.18  Aligned_cols=267  Identities=15%  Similarity=0.194  Sum_probs=194.4

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++++|...+.||+|+||.||+|....+   ...+++|+............+.+|+.+++.++|+||+++++++..+  +.
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~--~~   77 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRIN---GQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTK--ET   77 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCC---CcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecC--Ce
Confidence            357899999999999999999985433   3445566555443334445678999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|+||||+. ++|.+++...  ...+.+..+..++.|++.||.|||+.+   |+|+||||+|||++.++.++|+|||+++
T Consensus        78 ~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  151 (291)
T cd07870          78 LTFVFEYMH-TDLAQYMIQH--PGGLHPYNVRLFMFQLLRGLAYIHGQH---ILHRDLKPQNLLISYLGELKLADFGLAR  151 (291)
T ss_pred             EEEEEeccc-CCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEEcCCCcEEEecccccc
Confidence            999999995 6777776432  245788889999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc---
Q 011995          333 HIPET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR---  406 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~---  406 (473)
                      .....  ......++..|+|||.+.+. .++.++|||||||++|||++|..||.............|..........   
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (291)
T cd07870         152 AKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPG  231 (291)
T ss_pred             ccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhh
Confidence            54322  12333568899999998654 4788999999999999999999999865543221111111000000000   


Q ss_pred             ---c----ccccccccCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          407 ---L----SLIMDPQLKGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       407 ---~----~~~~~~~l~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         .    ............     .......+.+++.+|+..||.+|||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         232 VSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             hhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence               0    000000000000     0012467889999999999999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.3e-37  Score=300.72  Aligned_cols=264  Identities=18%  Similarity=0.239  Sum_probs=194.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||.|++|.||+|+...+   ...++++...... .......+.+|++++++++||||+++++++.+.  +..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~~   75 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLT---GEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE--NKLY   75 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCC---CCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccC--CcEE
Confidence            578889999999999999986543   3344455444332 222345788999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+. ++|..++... ....+++..+..++.|++.||+|||+.+   ++|+||+|+||+++.++.+||+|||++...
T Consensus        76 ~v~e~~~-~~l~~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~---i~H~~l~p~nill~~~~~~~l~dfg~~~~~  150 (284)
T cd07860          76 LVFEFLH-QDLKKFMDAS-PLSGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAF  150 (284)
T ss_pred             EEeeccc-cCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEeeccchhhc
Confidence            9999995 6898888653 2456899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh-Hhhhccccccc-------
Q 011995          335 PET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN-LVKWSRPFLAD-------  403 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~-~~~~~~~~~~~-------  403 (473)
                      ...  ......++..|+|||.+.+.. ++.++|||||||++|||+||..||.......... ...+.......       
T Consensus       151 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (284)
T cd07860         151 GVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTS  230 (284)
T ss_pred             ccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhH
Confidence            332  223335678899999886644 6889999999999999999999997655433221 11111000000       


Q ss_pred             ----ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 ----DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ----~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          ...........+ .......+.++.++|.+||+.||.+|||++++++
T Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         231 LPDYKPSFPKWARQDF-SKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HHHHHhhcccccccCH-HHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence                000000000000 0011234567889999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=8.1e-37  Score=296.29  Aligned_cols=265  Identities=20%  Similarity=0.229  Sum_probs=192.1

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |...+.||+|+||.||+|....+   .+.++++...............+|+.++.++. |+||+++++++.+...+..++
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~---~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~l   77 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKT---GKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLAL   77 (282)
T ss_pred             CceEeeccccccceEEEEEEcCC---CcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEE
Confidence            55678999999999999985433   33444554433222223344567999999985 999999999988764468999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+. |+|.+.+...  ...+++..+..++.|++.||.|||+.+   ++|+||+|+||+++. +.+||+|||++....
T Consensus        78 v~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~  150 (282)
T cd07831          78 VFELMD-MNLYELIKGR--KRPLPEKRVKSYMYQLLKSLDHMHRNG---IFHRDIKPENILIKD-DILKLADFGSCRGIY  150 (282)
T ss_pred             EEecCC-ccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEcC-CCeEEEecccccccc
Confidence            999996 5888887542  246899999999999999999999999   999999999999999 999999999997664


Q ss_pred             CCC-ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc----ccc---
Q 011995          336 ETD-ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD----DCR---  406 (473)
Q Consensus       336 ~~~-~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~----~~~---  406 (473)
                      ... .....++..|+|||.+.. ..++.++|||||||++|||++|..||.+.+..+....+.........    ...   
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (282)
T cd07831         151 SKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSR  230 (282)
T ss_pred             cCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccc
Confidence            332 233456789999998754 45789999999999999999999999876654322211100000000    000   


Q ss_pred             cccccccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          407 LSLIMDPQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       407 ~~~~~~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ......+....    ......+..+.++|.+||++||++||++.++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         231 HMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             cccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            00000000000    0112457889999999999999999999999863

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=7.9e-37  Score=299.17  Aligned_cols=265  Identities=19%  Similarity=0.241  Sum_probs=196.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC----ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      +|...+.||+|+||.||+|....+   ...++++..+....    ......+..|+++++.++|+||+++++++.+.  +
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~---~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~   75 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKET---GRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHK--S   75 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCC---CcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecC--C
Confidence            477778999999999999986543   33445555443321    22345677899999999999999999999875  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+ +|+|.+++....  ..+++..+..++.||+.||.|||+++   |+|+||+|+|||++.++.++|+|||++
T Consensus        76 ~~~lv~e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~  149 (298)
T cd07841          76 NINLVFEFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLA  149 (298)
T ss_pred             EEEEEEccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCChhhEEEcCCCCEEEccceee
Confidence            899999999 899999995432  36999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-ccccccc---
Q 011995          332 GHIPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-RPFLADD---  404 (473)
Q Consensus       332 ~~~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-~~~~~~~---  404 (473)
                      ......  ......++..|+|||.+.+ ..++.++|||||||++|||++|.++|...........+... .......   
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (298)
T cd07841         150 RSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPG  229 (298)
T ss_pred             eeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhh
Confidence            766443  2233355788999999865 45789999999999999999998888765543322221100 0000000   


Q ss_pred             -cccccccccccC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 -CRLSLIMDPQLK-----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 -~~~~~~~~~~l~-----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       ............     .......+..+.+++.+||..||.+|||+.|+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         230 VTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             cccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence             000000000000     01123456789999999999999999999999984

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.1e-36  Score=296.78  Aligned_cols=246  Identities=19%  Similarity=0.307  Sum_probs=194.6

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |...+.||+|++|.||++....+   ...+++++.... .....+.+.+|+.+++.++|+||+++++++...  +..++|
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~---~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~--~~~~~v   94 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKST---GRQVAVKKMDLR-KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVG--DELWVV   94 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCC---CCEEEEEEEecc-chhHHHHHHHHHHHHHHcCCCChheEEEEEEcC--CeEEEE
Confidence            44448999999999999985433   234445544332 223456688999999999999999999988765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      +||+.+++|.+++..    ..+++..+..++.|++.||+|||+++   |+||||+|+||+++.++.++|+|||++.....
T Consensus        95 ~e~~~~~~L~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~  167 (285)
T cd06648          95 MEFLEGGALTDIVTH----TRMNEEQIATVCLAVLKALSFLHAQG---VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK  167 (285)
T ss_pred             EeccCCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChhhEEEcCCCcEEEcccccchhhcc
Confidence            999999999999854    35899999999999999999999999   99999999999999999999999998865533


Q ss_pred             CC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          337 TD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       337 ~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      ..  .....++..|+|||.+.+..++.++|||||||++|||++|..||...........+....             .+.
T Consensus       168 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~-------------~~~  234 (285)
T cd06648         168 EVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNL-------------PPK  234 (285)
T ss_pred             CCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcC-------------CCC
Confidence            21  123457889999999988889999999999999999999999997655433322221110             000


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..  .+..++..+.+|+.+||..+|.+||++.++++
T Consensus       235 ~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         235 LK--NLHKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             Cc--ccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence            00  12235578999999999999999999999996

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=3.7e-37  Score=295.08  Aligned_cols=248  Identities=17%  Similarity=0.237  Sum_probs=198.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +|+..+.||.|+||.||+|....   ..+.+++++.....  .....+.+.+|++++++++||||+++++++.+.  +..
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~---~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   75 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRD---TKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDE--ENM   75 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEcc---CCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCC--CeE
Confidence            57888999999999999998543   33455565554322  224567899999999999999999999988655  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++|+||+.+++|.+++...   ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++..
T Consensus        76 ~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~l~d~~~~~~  149 (258)
T cd05578          76 YLVVDLLLGGDLRYHLSQK---VKFSEEQVKFWICEIVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATK  149 (258)
T ss_pred             EEEEeCCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEEcCCCCEEEeecccccc
Confidence            9999999999999999543   46899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .... ......++..|++||.+.+..++.++|+||||+++|+|++|..||...............    ..         
T Consensus       150 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~----~~---------  216 (258)
T cd05578         150 VTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQ----ET---------  216 (258)
T ss_pred             cCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHh----cc---------
Confidence            6443 223446778999999998888999999999999999999999999876532111111100    00         


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH--HHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTM--RSIF  449 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~--~eil  449 (473)
                        ....++...+..+.+++.+||..||.+||++  .|++
T Consensus       217 --~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         217 --ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             --ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence              1112344556889999999999999999999  5554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.3e-36  Score=295.99  Aligned_cols=252  Identities=23%  Similarity=0.350  Sum_probs=201.0

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      ..+++|+....||.|+||.||+|.....   ...+++++......  ....+.+|+++++.++|+||+++++++...  .
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~   88 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRAT---GKEVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYLVG--D   88 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccC---CcEEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEEEC--C
Confidence            3467788889999999999999986532   33445555543322  567789999999999999999999998876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++|+||+++++|.+++....  ..+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH~~g---i~H~dl~p~ni~i~~~~~~~l~d~~~~  163 (286)
T cd06614          89 ELWVVMEYMDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLHSQN---VIHRDIKSDNILLSKDGSVKLADFGFA  163 (286)
T ss_pred             EEEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCChhhEEEcCCCCEEECccchh
Confidence            8999999999999999996532  47999999999999999999999998   999999999999999999999999988


Q ss_pred             cccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .......  .....++..|++||.+.+..++.++|||||||++|+|++|..||...........+....        .  
T Consensus       164 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~--------~--  233 (286)
T cd06614         164 AQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKG--------I--  233 (286)
T ss_pred             hhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcC--------C--
Confidence            6553321  123346788999999988889999999999999999999999997655433222111000        0  


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         +..  .....++..+.+|+.+||+.+|.+||++.++++
T Consensus       234 ---~~~--~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         234 ---PPL--KNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             ---CCC--cchhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence               000  012235678999999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=9.5e-37  Score=300.49  Aligned_cols=269  Identities=18%  Similarity=0.197  Sum_probs=198.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|.....   +..+++|+...... ......+.+|+.++++++|+||+++++++.....+.
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTS---GEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDS   82 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCC---CcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCe
Confidence            46788999999999999999986543   34455665554432 222345678999999999999999999987654467


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+. ++|.+++...  ...+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++.
T Consensus        83 ~~lv~e~~~-~~l~~~l~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~kL~dfg~~~  156 (309)
T cd07845          83 IFLVMEYCE-QDLASLLDNM--PTPFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLAR  156 (309)
T ss_pred             EEEEEecCC-CCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccceee
Confidence            899999996 4888888542  356899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc-----
Q 011995          333 HIPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD-----  404 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~-----  404 (473)
                      .....  ......++..|+|||.+.+ ..++.++|||||||++|||++|.+||...........+..........     
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
T cd07845         157 TYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGF  236 (309)
T ss_pred             ecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhh
Confidence            76433  2223345788999999865 457899999999999999999999998776554433222110000000     


Q ss_pred             ---cccccc-cccccCCCC---CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 ---CRLSLI-MDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ---~~~~~~-~~~~l~~~~---~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ...... ........+   ....+..+.++|.+||+.||.+|||+.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         237 SDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             hcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence               000000 000000000   01246778899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=3.9e-37  Score=299.83  Aligned_cols=255  Identities=19%  Similarity=0.268  Sum_probs=191.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|+||.||++....+   ...++++.............+.+|+.++.++. |+||+++++++..+  ...+
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~--~~~~   79 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPS---GTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFRE--GDCW   79 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCC---CCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecC--CcEE
Confidence            445558899999999999986543   34455555444333455677899999999996 99999999988765  7789


Q ss_pred             EEEEeccCCChhhhhhc--CCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          255 LIYERLFHGSLDRLIYG--RSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~--~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ++|||+.. +|.++...  ......+++..+..++.|++.||+|||+. +   ++||||||+|||++.++.+||+|||++
T Consensus        80 ~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~  155 (288)
T cd06616          80 ICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK---IIHRDVKPSNILLDRNGNIKLCDFGIS  155 (288)
T ss_pred             EEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC---eeccCCCHHHEEEccCCcEEEeecchh
Confidence            99999854 65544321  11235689999999999999999999975 6   999999999999999999999999998


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcC---CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERG---LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~---~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ....... .....++..|+|||.+.+.   .++.++|||||||++|||++|..||......... ....    ..     
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-~~~~----~~-----  225 (288)
T cd06616         156 GQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQ-LTQV----VK-----  225 (288)
T ss_pred             HHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHH-Hhhh----cC-----
Confidence            7654332 2334678899999999776   6899999999999999999999999764421110 0000    00     


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ...+.+.......++.++.+|+.+||+.||++|||+.+|++.
T Consensus       226 --~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         226 --GDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             --CCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              001111112223466789999999999999999999999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.7e-36  Score=287.79  Aligned_cols=249  Identities=23%  Similarity=0.355  Sum_probs=199.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +|...+.||+|++|.||++....+   .+.+++++...... .....+.+|+++++.++|+||+++++++..+  ...++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~l   74 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRT---GKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSYLKK--DELWI   74 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCC---CcEEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEEecC--CeEEE
Confidence            467779999999999999997543   23344444433222 3567899999999999999999999998776  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ++||+++++|.+++...  ...+++..+..++.|++.+|.|||..+   ++|+||+|+||+++.++.++|+|||.+....
T Consensus        75 ~~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~  149 (253)
T cd05122          75 VMEFCSGGSLKDLLKST--NQTLTESQIAYVCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLS  149 (253)
T ss_pred             EEecCCCCcHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhcCC---EecCCCCHHHEEEccCCeEEEeecccccccc
Confidence            99999999999998543  256899999999999999999999998   9999999999999999999999999987765


Q ss_pred             CCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          336 ETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       336 ~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      ... .....++..|++||.+.+..++.++||||||+++|+|++|+.||...............        ...     .
T Consensus       150 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--------~~~-----~  216 (253)
T cd05122         150 DTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATN--------GPP-----G  216 (253)
T ss_pred             ccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhc--------CCC-----C
Confidence            443 23456778999999998888999999999999999999999999876443332221110        000     0


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +.  .....+..+.+++.+||+.||.+|||+.++++
T Consensus       217 ~~--~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         217 LR--NPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             cC--cccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            00  01123578999999999999999999999986

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=5.9e-37  Score=299.86  Aligned_cols=249  Identities=21%  Similarity=0.315  Sum_probs=196.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||++....+   .+.++++..... .....+.+.+|+.+++.++||||+++++++...  +..+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~---~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~--~~~~   92 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVAT---GQEVAIKQMNLQ-QQPKKELIINEILVMRENKHPNIVNYLDSYLVG--DELW   92 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCC---CCEEEEEEeccc-cchHHHHHHHHHHHHhhcCCCCeeehhheeeeC--CcEE
Confidence            6788889999999999999985432   234445544322 223356788999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+++++|.+++..    ..+++..+..++.|++.||.|||+++   ++|+||+|+||+++.++.++|+|||++...
T Consensus        93 lv~e~~~~~~L~~~~~~----~~l~~~~~~~i~~~l~~al~~LH~~g---i~H~dL~p~Nili~~~~~~kL~dfg~~~~~  165 (293)
T cd06647          93 VVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQI  165 (293)
T ss_pred             EEEecCCCCcHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHhCC---EeeccCCHHHEEEcCCCCEEEccCcceecc
Confidence            99999999999999843    24789999999999999999999999   999999999999999999999999988655


Q ss_pred             CCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ....  .....+++.|++||.+.+..++.++|||||||++|+|++|+.||...........+.      .         .
T Consensus       166 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~------~---------~  230 (293)
T cd06647         166 TPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIA------T---------N  230 (293)
T ss_pred             cccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehh------c---------C
Confidence            4332  223356788999999988889999999999999999999999997654332211000      0         0


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .......+...+..+.+++.+||..+|.+||++.+++..
T Consensus       231 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         231 GTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             CCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            000001123455778999999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=8.7e-37  Score=296.53  Aligned_cols=244  Identities=18%  Similarity=0.218  Sum_probs=184.7

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHH---hCCCCCcccceeeeecCCCCceEEE
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLA---SLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~---~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      .||+|+||.||++...++   .+.++++......  .......+.+|..++.   ..+|+||+.+++++...  +..++|
T Consensus         1 ~lg~G~~g~Vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~lv   75 (279)
T cd05633           1 IIGRGGFGEVYGCRKADT---GKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTP--DKLCFI   75 (279)
T ss_pred             CcccCCCeEEEEEEECCC---CcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecC--CeEEEE
Confidence            489999999999986443   3344455443321  1122233445544433   34799999999888765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+++|+|.+++..   ...+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.++|+|||++.....
T Consensus        76 ~e~~~~~~L~~~i~~---~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~  149 (279)
T cd05633          76 LDLMNGGDLHYHLSQ---HGVFSEKEMRFYATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSK  149 (279)
T ss_pred             EecCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCCCCCHHHEEECCCCCEEEccCCcceeccc
Confidence            999999999998853   346999999999999999999999999   99999999999999999999999999876544


Q ss_pred             CCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 TDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 ~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                      .......++..|+|||.+.+ ..++.++|||||||++|||++|..||...............           .    ..
T Consensus       150 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-----------~----~~  214 (279)
T cd05633         150 KKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMT-----------L----TV  214 (279)
T ss_pred             cCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHh-----------h----cC
Confidence            33344568899999999864 45899999999999999999999999754332211111100           0    00


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                      ...++...+.++.+++.+||..||.+||     ++.++++.
T Consensus       215 ~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         215 NVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             CcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            1122445668899999999999999999     59988875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.7e-36  Score=298.48  Aligned_cols=248  Identities=22%  Similarity=0.302  Sum_probs=194.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..|...+.||+|+||.||+|....+   ...+++++.....  .......+.+|+++++.++||||+++++++...  +.
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~---~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~--~~   89 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRT---NEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLRE--HT   89 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCC---CcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeC--Ce
Confidence            4477789999999999999986543   3344555544322  233446789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+. |+|.+++...  ...+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.
T Consensus        90 ~~lv~e~~~-g~l~~~~~~~--~~~l~~~~~~~~~~ql~~~L~~LH~~~---i~H~dl~p~nIl~~~~~~~kL~dfg~~~  163 (307)
T cd06607          90 AWLVMEYCL-GSASDILEVH--KKPLQEVEIAAICHGALQGLAYLHSHE---RIHRDIKAGNILLTEPGTVKLADFGSAS  163 (307)
T ss_pred             EEEEHHhhC-CCHHHHHHHc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEECCCCCEEEeecCcce
Confidence            899999996 5777777432  346899999999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....  ....++..|+|||.+.   ...++.++||||||+++|||++|..||...........+.+..+          
T Consensus       164 ~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~----------  231 (307)
T cd06607         164 LVSPA--NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDS----------  231 (307)
T ss_pred             ecCCC--CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCC----------
Confidence            65432  2345678899999874   35688999999999999999999999977654332221111100          


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         +.+   .....+..+.+++.+||..||++||++.+|+..
T Consensus       232 ---~~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         232 ---PTL---SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             ---CCC---CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence               000   122356789999999999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=2e-36  Score=295.82  Aligned_cols=267  Identities=17%  Similarity=0.214  Sum_probs=194.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC--
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~--  250 (473)
                      ++|+..+.||+|+||.||+|....+   .+.+++++..... .......+.+|+.+++.+ +|+||+++++++.....  
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~---~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~   77 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNT---GKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNG   77 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCC---CcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCC
Confidence            4788889999999999999986543   3445555544432 222346788999999999 46999999998876421  


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEEe
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKLS  326 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl~  326 (473)
                       ...|+||||+++ +|.+++.....  ...+++..+..++.||+.||.|||+++   |+||||+|+||+++. ++.+||+
T Consensus        78 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~~~nil~~~~~~~~kl~  153 (295)
T cd07837          78 KPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG---VMHRDLKPQNLLVDKQKGLLKIA  153 (295)
T ss_pred             CceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEecCCCeEEEe
Confidence             237999999975 89888864322  346899999999999999999999999   999999999999998 8999999


Q ss_pred             ccCCCcccCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hhcccccc
Q 011995          327 GYGCAGHIPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLA  402 (473)
Q Consensus       327 DFGla~~~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~~~~  402 (473)
                      |||++..+...  ......+++.|+|||++.+ ..++.++|||||||++|||++|..||...........+ .....  .
T Consensus       154 dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~--~  231 (295)
T cd07837         154 DLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGT--P  231 (295)
T ss_pred             ecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC--C
Confidence            99998765322  2233356788999998865 45789999999999999999999999876544332211 10000  0


Q ss_pred             ccccccccc-------ccccC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 DDCRLSLIM-------DPQLK----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~~~~~~~~~-------~~~l~----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .........       .+...    .......+..+.+||.+||..||.+||++.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         232 TEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             ChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            000000000       00000    0001235678899999999999999999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.6e-36  Score=289.94  Aligned_cols=250  Identities=19%  Similarity=0.270  Sum_probs=196.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|+||.||+|....+.   ..++++...... .....+.+.+|+++++.++|+||+++++++...  ...+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~--~~~~   75 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDS---EHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQEN--GRLF   75 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCC---ceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccC--CeEE
Confidence            4778899999999999999975543   334455443321 223456788999999999999999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGla~~  333 (473)
                      +|+||+++++|.+++... ....+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++ .+||+|||.+..
T Consensus        76 lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~~~l~d~~~~~~  151 (257)
T cd08225          76 IVMEYCDGGDLMKRINRQ-RGVLFSEDQILSWFVQISLGLKHIHDRK---ILHRDIKSQNIFLSKNGMVAKLGDFGIARQ  151 (257)
T ss_pred             EEEecCCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEcCCCCeEEecccccchh
Confidence            999999999999998653 2346899999999999999999999998   99999999999999885 569999999876


Q ss_pred             cCCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ......  ....++..|+|||.+.+..++.++|||||||+++||++|..||...........+.  .     .       
T Consensus       152 ~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~--~-----~-------  217 (257)
T cd08225         152 LNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKIC--Q-----G-------  217 (257)
T ss_pred             ccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHh--c-----c-------
Confidence            643321  22357788999999988889999999999999999999999997654333221110  0     0       


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        .. .......+.++.+++.+||..+|++|||+.++++.
T Consensus       218 --~~-~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         218 --YF-APISPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             --cC-CCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence              00 01122345789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-38  Score=290.90  Aligned_cols=240  Identities=17%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...++||+|+||.|-+++   ...+++.+++|+.+...  ....+..-+.|-.+|...+||.+..|.-.|...  +.
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~r---EKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~--dr  242 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCR---EKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQ--DR  242 (516)
T ss_pred             chhhHHHHhcCCccceEEEEe---ecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccC--ce
Confidence            455666999999999999998   66678888888765432  334455567789999999999999987667665  89


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|+||||..||.|.-+|.   ....+++.....+..+|+.||.|||+++   ||+||||.+|+|+|.+|++||+|||+.+
T Consensus       243 lCFVMeyanGGeLf~HLs---rer~FsE~RtRFYGaEIvsAL~YLHs~~---ivYRDlKLENLlLDkDGHIKitDFGLCK  316 (516)
T KOG0690|consen  243 LCFVMEYANGGELFFHLS---RERVFSEDRTRFYGAEIVSALGYLHSRN---IVYRDLKLENLLLDKDGHIKITDFGLCK  316 (516)
T ss_pred             EEEEEEEccCceEeeehh---hhhcccchhhhhhhHHHHHHhhhhhhCC---eeeeechhhhheeccCCceEeeecccch
Confidence            999999999999998884   3456888888999999999999999999   9999999999999999999999999986


Q ss_pred             cc--CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HI--PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~--~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .-  ......+.+||+.|+|||++....|+.++|.|.+||++|||++|+.||...+-.....+|...             
T Consensus       317 E~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~e-------------  383 (516)
T KOG0690|consen  317 EEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILME-------------  383 (516)
T ss_pred             hcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhh-------------
Confidence            43  233456789999999999999999999999999999999999999999876544444443211             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCC
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERP  443 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP  443 (473)
                         .  -.||...++++..|+..+|.+||.+|.
T Consensus       384 ---d--~kFPr~ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  384 ---D--LKFPRTLSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             ---h--ccCCccCCHHHHHHHHHHhhcChHhhc
Confidence               1  135778889999999999999999995

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=8.1e-37  Score=304.73  Aligned_cols=271  Identities=15%  Similarity=0.208  Sum_probs=197.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---C
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---S  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---~  250 (473)
                      +++|++.+.||+|+||.||+|....   ++..+++|+............+.+|+.+++.++|+||+++++++....   .
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   80 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKP---TGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESF   80 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcC---CCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeeccccccc
Confidence            5789999999999999999998543   334455555433233445567889999999999999999999876432   2


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++|+||+. ++|.+++.    ...+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+
T Consensus        81 ~~~~lv~e~~~-~~l~~~~~----~~~l~~~~~~~i~~ql~~aL~~LH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~  152 (336)
T cd07849          81 NDVYIVQELME-TDLYKLIK----TQHLSNDHIQYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTNCDLKICDFGL  152 (336)
T ss_pred             ceEEEEehhcc-cCHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEECcccc
Confidence            45799999996 48888773    235899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC-----ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          331 AGHIPETD-----ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       331 a~~~~~~~-----~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      +.......     .....++..|+|||.+.+ ..++.++|||||||++|+|++|+.||.+.+.......+...... ...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~-~~~  231 (336)
T cd07849         153 ARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGT-PSQ  231 (336)
T ss_pred             eeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCC-CCH
Confidence            87653221     122356889999998755 45889999999999999999999999765543322111000000 000


Q ss_pred             cccccccccc---------cCCC-----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          405 CRLSLIMDPQ---------LKGR-----FPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       405 ~~~~~~~~~~---------l~~~-----~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                      .....+.+..         ....     .....+.++.+++.+||+.||++|||+.++++.  |+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         232 EDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             HHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence            0000000000         0000     011346778999999999999999999999987  55544

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2e-37  Score=265.70  Aligned_cols=265  Identities=19%  Similarity=0.253  Sum_probs=212.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhh-HhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...++||+|+||+||+|+   +..+...++.+..++....++. ....+||-+|+.+.|.|||++++....+  ..+-
T Consensus         3 ~ydkmekigegtygtvfkar---n~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsd--kklt   77 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKAR---NRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--KKLT   77 (292)
T ss_pred             chHHHHhhcCCcceeeEecc---cCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccC--ceeE
Confidence            45556899999999999998   5556677888888888665554 5688999999999999999999987655  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+|||+. +|..+...  -.+.++.+.+..++.|+++||.|+|+++   +.|||+||.|+||+.+|++|++|||+++.+
T Consensus        78 lvfe~cdq-dlkkyfds--lng~~d~~~~rsfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglaraf  151 (292)
T KOG0662|consen   78 LVFEFCDQ-DLKKYFDS--LNGDLDPEIVRSFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAF  151 (292)
T ss_pred             EeHHHhhH-HHHHHHHh--cCCcCCHHHHHHHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhc
Confidence            99999955 88888743  3456899999999999999999999999   999999999999999999999999999877


Q ss_pred             CCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc-
Q 011995          335 PET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL-  409 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  409 (473)
                      .-.  -++..++|.+|.+|.++.+.. |+...|+||-|||+.|+.. |++.|.+.+-.++...+-|......++.+... 
T Consensus       152 gipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t  231 (292)
T KOG0662|consen  152 GIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMT  231 (292)
T ss_pred             CCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccc
Confidence            533  345668899999999998765 8999999999999999985 88888888777776666665444333323222 


Q ss_pred             -ccccccCCCCCH---------HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 -IMDPQLKGRFPL---------KAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 -~~~~~l~~~~~~---------~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       +.|=.....|+.         .....-++++.+.|.-+|.+|.++++.++.
T Consensus       232 ~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  232 KLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             cCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence             222222222332         334456799999999999999999988763

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=1.6e-36  Score=291.36  Aligned_cols=243  Identities=19%  Similarity=0.278  Sum_probs=192.7

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||.|+||.||+++...   ..+.+++++.....  .....+.+.+|+.+++.++|+||+++++++.++  ...++|+||+
T Consensus         1 lg~g~~~~v~~~~~~~---~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKS---KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDK--KYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECC---CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcC--CccEEEEecC
Confidence            6899999999999654   23445555554332  223457799999999999999999999988765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC-c
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-I  339 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~-~  339 (473)
                      ++++|.+++...   ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++....... .
T Consensus        76 ~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lH~~~---~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~  149 (262)
T cd05572          76 LGGELWTILRDR---GLFDEYTARFYIACVVLAFEYLHNRG---IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKT  149 (262)
T ss_pred             CCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEEcCCCCEEEeeCCcccccCccccc
Confidence            999999999543   35899999999999999999999998   9999999999999999999999999998765432 2


Q ss_pred             cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCC
Q 011995          340 SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF  419 (473)
Q Consensus       340 ~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  419 (473)
                      ....++..|++||.+.+..++.++|+||||+++|||++|..||.............              +.+......+
T Consensus       150 ~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~--------------~~~~~~~~~~  215 (262)
T cd05572         150 WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYND--------------ILKGNGKLEF  215 (262)
T ss_pred             ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHH--------------HhccCCCCCC
Confidence            23466789999999988889999999999999999999999997655211111000              0000111123


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 011995          420 PLKAARTVADIALRCLQKEPSERPT-----MRSIFE  450 (473)
Q Consensus       420 ~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~  450 (473)
                      +...+.++.+++.+||+.||.+||+     +.|+++
T Consensus       216 ~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         216 PNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             CcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            4444688999999999999999999     777776

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2.8e-36  Score=302.91  Aligned_cols=267  Identities=14%  Similarity=0.190  Sum_probs=197.3

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC--
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG--  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~--  249 (473)
                      ..++|+..+.||+|+||.||+|....   ..+.+++|..... ........+.+|+.++++++|+||+++++++....  
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTV---TGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSL   90 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECC---CCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCc
Confidence            45789999999999999999998543   3344455544322 23334567788999999999999999999876432  


Q ss_pred             --CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          250 --SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       250 --~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                        ....|+||||+. ++|.+.+..     .+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|
T Consensus        91 ~~~~~~~lv~e~~~-~~l~~~~~~-----~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nil~~~~~~~kL~D  161 (353)
T cd07850          91 EEFQDVYLVMELMD-ANLCQVIQM-----DLDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILD  161 (353)
T ss_pred             cccCcEEEEEeccC-CCHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEcc
Confidence              135799999995 588887732     2888999999999999999999999   99999999999999999999999


Q ss_pred             cCCCcccCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh--ccc-----
Q 011995          328 YGCAGHIPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW--SRP-----  399 (473)
Q Consensus       328 FGla~~~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~--~~~-----  399 (473)
                      ||++........ ....++..|+|||.+.+..++.++|||||||++|+|++|..||...+.......+..  ..+     
T Consensus       162 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  241 (353)
T cd07850         162 FGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFM  241 (353)
T ss_pred             CccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            999986644322 234567899999999998999999999999999999999999987654332211100  000     


Q ss_pred             ---------ccccc-----ccccccccc----ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 ---------FLADD-----CRLSLIMDP----QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ---------~~~~~-----~~~~~~~~~----~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                               +....     ..+..+...    ......+...+..+.+++.+||+.||.+|||+.|+|+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         242 SRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             HHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                     00000     000000000    00001122346778999999999999999999999965

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.7e-37  Score=309.24  Aligned_cols=252  Identities=18%  Similarity=0.254  Sum_probs=207.8

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .....|.+.+.||+|.|+.|..|+...   +...+++|++.... .......+.+|+++|..++|||||+++++....  
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~---t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~--  127 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHIL---TGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETE--  127 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecC---CCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeec--
Confidence            345788899999999999999998543   44555565544332 333445589999999999999999999998776  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ..+|+||||+.+|.+++++...   ..+.+..+..++.|+.++++|||+++   |||||||++||||+.+.++||+|||+
T Consensus       128 ~~lylV~eya~~ge~~~yl~~~---gr~~e~~ar~~F~q~vsaveYcH~k~---ivHrdLk~eNilL~~~mnikIaDfgf  201 (596)
T KOG0586|consen  128 ATLYLVMEYASGGELFDYLVKH---GRMKEKEARAKFRQIVSAVEYCHSKN---IVHRDLKAENILLDENMNIKIADFGF  201 (596)
T ss_pred             ceeEEEEEeccCchhHHHHHhc---ccchhhhhhhhhHHHHHHHHHHhhcc---eeccccchhhcccccccceeeecccc
Confidence            8999999999999999999543   34566888999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC-CccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPET-DISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~-~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +.++... ...+.+|++.|.|||++.+..| ++.+|+||+|++||-|+.|..||++.+..+....+...           
T Consensus       202 S~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~g-----------  270 (596)
T KOG0586|consen  202 STFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRG-----------  270 (596)
T ss_pred             ceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheee-----------
Confidence            9988654 3467799999999999998876 58999999999999999999999987655433222110           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                             +-.++.-.+.++.++|+++|..+|.+|+++.++++.-
T Consensus       271 -------k~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  271 -------KYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             -------eecccceeechhHHHHHHhhccCccccCCHHHhhhhc
Confidence                   0122455667889999999999999999999998753

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-36  Score=295.12  Aligned_cols=263  Identities=17%  Similarity=0.217  Sum_probs=194.6

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |+..+.||.|++|.||+|....+   +..+++++...... ......+.+|+++++.++|+||+++++++.+.  +..++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~--~~~~i   75 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLT---GEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSE--NKLYL   75 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCC---CCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccC--CeEEE
Confidence            56678999999999999986543   34455555544332 22346788999999999999999999998765  88999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||++ ++|.+++.... ...+++..+..++.|++.||+|||+++   ++|+||+|+||+++.++.++|+|||++....
T Consensus        76 v~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~L~~lH~~~---~~H~dl~p~nil~~~~~~~~l~df~~~~~~~  150 (283)
T cd07835          76 VFEFLD-LDLKKYMDSSP-LTGLDPPLIKSYLYQLLQGIAYCHSHR---VLHRDLKPQNLLIDREGALKLADFGLARAFG  150 (283)
T ss_pred             EEeccC-cCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCcEEEeecccccccC
Confidence            999995 68999885432 246899999999999999999999998   9999999999999999999999999987553


Q ss_pred             CC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhH-hhhcccccccc-------
Q 011995          336 ET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL-VKWSRPFLADD-------  404 (473)
Q Consensus       336 ~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~-~~~~~~~~~~~-------  404 (473)
                      ..  ......++..|+|||++.+. .++.++|||||||++|||++|.+||........... ..+........       
T Consensus       151 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd07835         151 VPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSL  230 (283)
T ss_pred             CCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhc
Confidence            22  12333557889999988654 478899999999999999999999987654332211 11110000000       


Q ss_pred             c----ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 C----RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ~----~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .    .......... .......+..+.+++.+||+.||.+|||+.++++
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         231 PDYKPTFPKWARQDL-SKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhhhhhcccccccch-hhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            0    0000000000 0112234578899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-37  Score=299.16  Aligned_cols=266  Identities=20%  Similarity=0.311  Sum_probs=194.9

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHh--CCCCCcccceeeeecCC--CCceEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLAS--LQHPNLCKLLGFHARDG--SDQRMLI  256 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~--l~HpnIv~l~g~~~~~~--~~~~~lV  256 (473)
                      .+||+|.||.||+|.+.+..     +|||+..    .+..+.|.+|-+|.+.  +.|+||++++++-....  .-.++||
T Consensus       216 eli~~Grfg~V~KaqL~~~~-----VAVKifp----~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQLDNRL-----VAVKIFP----EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             HHhhcCccceeehhhccCce-----eEEEecC----HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence            77999999999999987744     2344332    3456778888777765  48999999998654331  2489999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC------CCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG------PFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~------~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +||.+.|+|.++|..    ..++|....+|+..+++||+|||+..      +|+|+|||||..||||..|+++.|+|||+
T Consensus       287 t~fh~kGsL~dyL~~----ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGL  362 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLKA----NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGL  362 (534)
T ss_pred             eeeccCCcHHHHHHh----ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccce
Confidence            999999999999954    46999999999999999999999654      46899999999999999999999999999


Q ss_pred             CcccCCC----CccCcccccccCChhhhhcCC-CC-----CcCCchHHHHHHHHHHcCCCCCC-CCChHHHHhHhh--hc
Q 011995          331 AGHIPET----DISNSSVAAANLSVETLERGL-LT-----PKSNVWSFGIVLLELLTGRKNLD-SRHPKEERNLVK--WS  397 (473)
Q Consensus       331 a~~~~~~----~~~~~~~t~~y~aPE~~~~~~-~s-----~~sDvwSlGvvl~elltG~~p~~-~~~~~~~~~~~~--~~  397 (473)
                      |..+...    +....+||.+|||||++.+.. +.     .+.||||+|.|||||+++..-+. +..+..+.-+-.  -.
T Consensus       363 Al~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~  442 (534)
T KOG3653|consen  363 ALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGN  442 (534)
T ss_pred             eEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcC
Confidence            9877433    445578999999999997743 22     36899999999999999765543 211111110000  00


Q ss_pred             ccccccccccccccccccCCCCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPL-----KAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .|.+.+  ....++....+..++.     ....-+++.+..||..|++.|.|+.-+.+.+.++......
T Consensus       443 hPt~e~--mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~  509 (534)
T KOG3653|consen  443 HPTLEE--MQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWED  509 (534)
T ss_pred             CCCHHH--HHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCc
Confidence            111111  1111112222222222     3456789999999999999999999999999988765544

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=4.4e-36  Score=298.41  Aligned_cols=262  Identities=21%  Similarity=0.235  Sum_probs=190.5

Q ss_pred             cceeec--CCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEG--LSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G--~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      ..||+|  +||+||++..   ...++.+++++..... .....+.+.+|+.+++.++||||+++++++...  +..++||
T Consensus         4 ~~ig~g~~~~~~v~~a~~---~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~--~~~~~v~   78 (328)
T cd08226           4 VEIGRGFCNLTSVYLARH---TPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTG--SWLWVIS   78 (328)
T ss_pred             HHhCCcccCceeEEEEEE---cCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecC--CceEEEE
Confidence            456666  9999999984   3344566676665543 233457788999999999999999999999875  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      ||+.+++|.+++.... ...+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.++++||+.+......
T Consensus        79 e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~  154 (328)
T cd08226          79 PFMAYGSANSLLKTYF-PEGMSEALIGNILFGALRGLNYLHQNG---YIHRNIKASHILISGDGLVSLSGLSHLYSLVRN  154 (328)
T ss_pred             ecccCCCHHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEeCCCcEEEechHHHhhhhcc
Confidence            9999999999886532 345899999999999999999999998   999999999999999999999999754322111


Q ss_pred             C---------ccCcccccccCChhhhhcC--CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc--
Q 011995          338 D---------ISNSSVAAANLSVETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD--  404 (473)
Q Consensus       338 ~---------~~~~~~t~~y~aPE~~~~~--~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~--  404 (473)
                      .         .....++..|++||++.+.  .++.++|||||||++|||++|..||................++...+  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  234 (328)
T cd08226         155 GQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDIT  234 (328)
T ss_pred             CccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCcccc
Confidence            0         0111234679999999764  47899999999999999999999997654332211110000000000  


Q ss_pred             ----------------------cc-----cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 ----------------------CR-----LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ----------------------~~-----~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                            ..     ........+.......++..+.+|+.+||+.||++|||+.++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         235 TFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             ccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                                  00     000111111222234567889999999999999999999999854

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=3.7e-36  Score=287.13  Aligned_cols=251  Identities=20%  Similarity=0.264  Sum_probs=202.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|++.+.||+|+||.||++....+   .+.++++...... .......+.+|+++++.++|+||+++++++...  ...+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   75 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSD---NQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDG--NKLC   75 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCC---CCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccC--CEEE
Confidence            477789999999999999985443   3344455444322 233456788999999999999999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++.... ....+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.+||+|||++..
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~---i~h~~l~~~ni~~~~~~~~kl~d~g~~~~  152 (256)
T cd08530          76 IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK---ILHRDLKSANILLVANDLVKIGDLGISKV  152 (256)
T ss_pred             EEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEEecCCcEEEeeccchhh
Confidence            9999999999999885522 2356899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ..........++..|++||.+.+..++.++|+||||+++|||++|+.||...........+..                 
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~-----------------  215 (256)
T cd08530         153 LKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQR-----------------  215 (256)
T ss_pred             hccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhc-----------------
Confidence            765543445678899999999888899999999999999999999999987654332221110                 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ......+...+.++.+++.+||..+|++||++.++++.
T Consensus       216 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         216 GKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             CCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            00111234566889999999999999999999999863

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=4.2e-36  Score=295.33  Aligned_cols=268  Identities=17%  Similarity=0.220  Sum_probs=194.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|+..+.||+|+||.||+|....   ..+.++++...... .......+.+|+.++++++||||+++++++...+   
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~---~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKK---TKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPY   87 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECC---CCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccc
Confidence            3578999999999999999998544   34555566554432 2222345678999999999999999999886542   


Q ss_pred             ---CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 ---SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                         ....++||||+. ++|.+.+...  ...+++..+..++.||+.||.|||+++   ++|+||||+||+++.++.+||+
T Consensus        88 ~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~  161 (310)
T cd07865          88 NRYKGSFYLVFEFCE-HDLAGLLSNK--NVKFTLSEIKKVMKMLLNGLYYIHRNK---ILHRDMKAANILITKDGILKLA  161 (310)
T ss_pred             cCCCceEEEEEcCCC-cCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCcEEEC
Confidence               135699999995 5888887432  346899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCC------ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          327 GYGCAGHIPETD------ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       327 DFGla~~~~~~~------~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |||++.......      .....++..|+|||.+.+.. ++.++||||||+++|||++|..||...........+.....
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~  241 (310)
T cd07865         162 DFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCG  241 (310)
T ss_pred             cCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC
Confidence            999987653321      12335678899999986654 78899999999999999999999987665444333322111


Q ss_pred             ccccc-----cccccccccccCCC----C-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          400 FLADD-----CRLSLIMDPQLKGR----F-----PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       400 ~~~~~-----~~~~~~~~~~l~~~----~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .....     ........-.....    .     +...+..+.+||.+||..||.+|||+.++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         242 SITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             CCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence            00000     00000000000000    0     1112456789999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=3.2e-36  Score=291.95  Aligned_cols=245  Identities=19%  Similarity=0.270  Sum_probs=189.9

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||+|+||+||++....+   ++.+++++.....  .......+.+|+++++.++||||+++++++...  +..|+||||+
T Consensus         1 lg~g~~g~vy~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKAT---GKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETK--DDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcCC---CcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecC--CeEEEEEecC
Confidence            68999999999985443   3445555544321  222345667899999999999999999988765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-Cc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-DI  339 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-~~  339 (473)
                      ++++|.+++.... ...+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++...... ..
T Consensus        76 ~~~~L~~~l~~~~-~~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  151 (277)
T cd05577          76 NGGDLKYHIYNVG-EPGFPEARAIFYAAQIICGLEHLHQRR---IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKI  151 (277)
T ss_pred             CCCcHHHHHHHcC-cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEccCcchhhhccCCcc
Confidence            9999999986542 246899999999999999999999999   999999999999999999999999998765432 22


Q ss_pred             cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCC
Q 011995          340 SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF  419 (473)
Q Consensus       340 ~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  419 (473)
                      ....++..|++||.+.+..++.++|||||||++|+|++|+.||...........+...  ..            .....+
T Consensus       152 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~--~~------------~~~~~~  217 (277)
T cd05577         152 KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRR--TL------------EMAVEY  217 (277)
T ss_pred             ccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhc--cc------------cccccC
Confidence            3345678999999998888999999999999999999999999765431111111100  00            001112


Q ss_pred             CHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          420 PLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       420 ~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                      +...+..+.+++.+||+.||.+||     ++.+++.
T Consensus       218 ~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         218 PDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             CccCCHHHHHHHHHHccCChhHccCCCcccHHHHHh
Confidence            334567899999999999999999     6666764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=6e-36  Score=285.30  Aligned_cols=251  Identities=21%  Similarity=0.352  Sum_probs=201.3

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|++|.||+|....+   .+.+++++..... .......+.+|++++++++|+||+++++++........+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   77 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDT---GELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLN   77 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCC---CcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEE
Confidence            467779999999999999986542   3444455544332 234567889999999999999999999988765336789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|+||+++++|.+++...   ..+++..+..++.|++.+|+|||+.+   ++|+||+|+||+++.++.++|+|||.+...
T Consensus        78 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~~~---~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~  151 (260)
T cd06606          78 IFLEYVSGGSLSSLLKKF---GKLPEPVIRKYTRQILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRL  151 (260)
T ss_pred             EEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEcccccEEec
Confidence            999999999999999543   27999999999999999999999998   999999999999999999999999998877


Q ss_pred             CCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....    .....++..|++||.+.+..++.++||||||+++++|++|..||......... ...              +
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~-~~~--------------~  216 (260)
T cd06606         152 GDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAA-LYK--------------I  216 (260)
T ss_pred             ccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHH-HHh--------------c
Confidence            5543    23456778999999998888999999999999999999999999876511111 000              0


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ........++...+..+.+++.+||..||.+||++.++++
T Consensus       217 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         217 GSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             cccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            0011112234455788999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-36  Score=293.24  Aligned_cols=265  Identities=19%  Similarity=0.248  Sum_probs=196.7

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |++.+.||+|+||.||+|...++   .+.+++++..... .......+.+|+++++.++|+|++++++++........++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~---~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~l   77 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKT---GELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYM   77 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCC---CeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEE
Confidence            56678999999999999986553   3444555554432 2333467889999999999999999999987653468999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+++ +|.+++...  ...+++..+..++.||+.||+|||+.+   ++|+||+|+||+++.++.+||+|||++....
T Consensus        78 v~e~~~~-~l~~~~~~~--~~~~~~~~~~~i~~~i~~al~~LH~~~---~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~  151 (287)
T cd07840          78 VFEYMDH-DLTGLLDSP--EVKFTESQIKCYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARPYT  151 (287)
T ss_pred             Eeccccc-cHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEEcCCCCEEEccccceeecc
Confidence            9999975 898888543  246899999999999999999999999   9999999999999999999999999987664


Q ss_pred             CCC---ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc--cccc
Q 011995          336 ETD---ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC--RLSL  409 (473)
Q Consensus       336 ~~~---~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  409 (473)
                      ...   .....++..|+|||.+.+ ..++.++||||||+++|||++|..||...........+...........  ....
T Consensus       152 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (287)
T cd07840         152 KRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSK  231 (287)
T ss_pred             CCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhcccccc
Confidence            432   233456788999998765 4578999999999999999999999987665443322211100000000  0000


Q ss_pred             -----------ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 -----------IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 -----------~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                 .....+...+...++..+.+++.+||..+|.+||++.++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         232 LPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             chhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                       00000001111113678899999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=2.7e-36  Score=301.03  Aligned_cols=267  Identities=17%  Similarity=0.230  Sum_probs=197.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|+..+.||+|+||.||+|....+   ...++++..... ........+.+|+.++.++ +|+||+++++++.....
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~---~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~   81 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRT---KEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEND   81 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCC---CeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCC
Confidence            456788889999999999999986533   233334433211 1233445678899999999 99999999999876544


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||||+. ++|..++...    .+++..+..++.||+.||+|||+.+   |+|+||||+||+++.++.+||+|||+
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~~---i~H~dl~p~nill~~~~~~kl~d~g~  153 (337)
T cd07852          82 KDIYLVFEYME-TDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGL  153 (337)
T ss_pred             ceEEEEecccc-cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccc
Confidence            67899999996 5999888432    6889999999999999999999998   99999999999999999999999999


Q ss_pred             CcccCCCC-------ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc
Q 011995          331 AGHIPETD-------ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       331 a~~~~~~~-------~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      +.......       .....++..|+|||.+.+ ..++.++|||||||++|||++|+.||...........+........
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~  233 (337)
T cd07852         154 ARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPS  233 (337)
T ss_pred             hhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence            87654322       123356789999998755 4578999999999999999999999987655443332221111000


Q ss_pred             cc-----------cccccccc---cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 DD-----------CRLSLIMD---PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ~~-----------~~~~~~~~---~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..           ..+..+..   ..+. ......+.++.++|.+||+.||++|||+.++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         234 AEDIESIKSPFAATMLDSLPSRPRKPLD-ELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHHHHHhhhHHHhhhhcccccccchh-hhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            00           00000000   0000 0112256789999999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=5.3e-36  Score=292.88  Aligned_cols=266  Identities=17%  Similarity=0.217  Sum_probs=193.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|++|.||+|....+   .+.++++...... .......+.+|++++++++|+||+++++++...  ...
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   76 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVT---NETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE--KRL   76 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCC---CcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecC--CeE
Confidence            5788889999999999999986443   3344455444332 223346788999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEEeccCCCc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKLSGYGCAG  332 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl~DFGla~  332 (473)
                      ++||||++ ++|.+++... ....+++..+..++.||+.||+|||+++   ++|+||+|+||+++. ++.+||+|||++.
T Consensus        77 ~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dl~p~nill~~~~~~~kl~dfg~~~  151 (294)
T PLN00009         77 YLVFEYLD-LDLKKHMDSS-PDFAKNPRLIKTYLYQILRGIAYCHSHR---VLHRDLKPQNLLIDRRTNALKLADFGLAR  151 (294)
T ss_pred             EEEEeccc-ccHHHHHHhC-CCCCcCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCcceEEEECCCCEEEEccccccc
Confidence            99999995 5888877543 2334688899999999999999999998   999999999999985 5679999999987


Q ss_pred             ccCCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-h-hccccccc---c
Q 011995          333 HIPET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-K-WSRPFLAD---D  404 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~-~~~~~~~~---~  404 (473)
                      .....  ......++..|++||++.+. .++.++|||||||++|+|+||.+||...........+ . +..+....   .
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (294)
T PLN00009        152 AFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGV  231 (294)
T ss_pred             ccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccc
Confidence            55322  22334567899999998764 5789999999999999999999999876543332211 1 00000000   0


Q ss_pred             ccccccc--ccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 CRLSLIM--DPQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ~~~~~~~--~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..+....  .+....    ......+.++.+++.+||+.||++||++.++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        232 TSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             ccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0000000  000000    012234677899999999999999999999986

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=6.7e-36  Score=295.67  Aligned_cols=251  Identities=21%  Similarity=0.266  Sum_probs=194.6

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |...+.||+|+||.||++....+   ...+++++.....  .......+.+|+++++.++|+|++++++++..+  +..+
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~---~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~  101 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRT---NEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLRE--HTAW  101 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCC---CcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC--CeEE
Confidence            66668999999999999986543   2344455444321  223446788999999999999999999998776  7889


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+. |+|.+++..  ....+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++...
T Consensus       102 lv~e~~~-g~l~~~~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~~~---i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~  175 (317)
T cd06635         102 LVMEYCL-GSASDLLEV--HKKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIA  175 (317)
T ss_pred             EEEeCCC-CCHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcccEEECCCCCEEEecCCCcccc
Confidence            9999996 588777743  2346899999999999999999999999   999999999999999999999999988654


Q ss_pred             CCCCccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..  .....++..|+|||.+.   .+.++.++|||||||++|||++|..||...........+....             
T Consensus       176 ~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~-------------  240 (317)
T cd06635         176 SP--ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-------------  240 (317)
T ss_pred             CC--cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcc-------------
Confidence            33  23446778999999974   4568899999999999999999999997654333221111000             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                         .........+..+.+++.+||+.+|.+||++.++++.+..+.
T Consensus       241 ---~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  282 (317)
T cd06635         241 ---SPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLR  282 (317)
T ss_pred             ---CCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence               000012234567899999999999999999999998765433

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=7.5e-36  Score=289.74  Aligned_cols=244  Identities=18%  Similarity=0.227  Sum_probs=185.3

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHH---HHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDV---NTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei---~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      .||+|+||.||++...+   ..+.++++......  .......+..|.   .+++...||||+.+++++...  +..++|
T Consensus         1 ~ig~g~~g~Vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~v   75 (278)
T cd05606           1 IIGRGGFGEVYGCRKAD---TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP--DKLSFI   75 (278)
T ss_pred             CcccCCCeEEEEEEEec---CCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecC--CEEEEE
Confidence            48999999999998543   33445555544321  112222233443   344556899999999988765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||+.+|+|.+++..   ...+++..+..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.....
T Consensus        76 ~e~~~g~~L~~~l~~---~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~nili~~~~~~kl~dfg~~~~~~~  149 (278)
T cd05606          76 LDLMNGGDLHYHLSQ---HGVFSEAEMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSK  149 (278)
T ss_pred             EecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCCCCHHHEEECCCCCEEEccCcCccccCc
Confidence            999999999998843   346999999999999999999999998   99999999999999999999999999876654


Q ss_pred             CCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          337 TDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       337 ~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                      .......++..|+|||.+.++ .++.++|||||||++|||++|..||............. .          .....   
T Consensus       150 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~-~----------~~~~~---  215 (278)
T cd05606         150 KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR-M----------TLTMA---  215 (278)
T ss_pred             cCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHH-H----------hhccC---
Confidence            444455788999999999754 58999999999999999999999997653222111110 0          00001   


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                       ..++...+.++.+++.+||..+|.+||     ++.++++.
T Consensus       216 -~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         216 -VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             -CCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence             112334568899999999999999999     99999853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=5.3e-36  Score=299.02  Aligned_cols=272  Identities=17%  Similarity=0.242  Sum_probs=199.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--  250 (473)
                      .++|...+.||+|+||+||+|....   +.+.+++|..... ........+.+|+.+++.++|+||+++++++.....  
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~   80 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSE---TNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREA   80 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecC---CCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccc
Confidence            4578889999999999999998543   3445555544332 123345667889999999999999999998765321  


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       ...|+||||+. ++|.+++..   ...+++..+..++.|++.||.|||+++   ++|+||||+||+++.++.+||+|||
T Consensus        81 ~~~~~lv~e~~~-~~L~~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg  153 (337)
T cd07858          81 FNDVYIVYELMD-TDLHQIIRS---SQTLSDDHCQYFLYQLLRGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFG  153 (337)
T ss_pred             cCcEEEEEeCCC-CCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcCc
Confidence             35899999995 689888843   346999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-cc------
Q 011995          330 CAGHIPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-RP------  399 (473)
Q Consensus       330 la~~~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-~~------  399 (473)
                      ++......  ......++..|+|||.+.. ..++.++|||||||++|+|++|++||.+.+.......+... ..      
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T cd07858         154 LARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDL  233 (337)
T ss_pred             cccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHh
Confidence            99766433  1233456789999998865 46899999999999999999999999776433222211100 00      


Q ss_pred             -ccccccc------cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          400 -FLADDCR------LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       400 -~~~~~~~------~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                       +......      .....++... .....++.++.+++.+||+.||++|||+.++++.  |..+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~  298 (337)
T cd07858         234 GFIRNEKARRYIRSLPYTPRQSFA-RLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLH  298 (337)
T ss_pred             hhcCchhhhHHHHhcCcccccCHH-HHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhc
Confidence             0000000      0000000000 0112456788999999999999999999999987  65543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=8.7e-36  Score=289.05  Aligned_cols=262  Identities=20%  Similarity=0.244  Sum_probs=196.3

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |...+.||.|++|.||+|....+   .+.++++...... .......+.+|++++++++|+||+++++++...  +..++
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~~   75 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLT---GEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHK--GDLYL   75 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCC---CcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccC--CCEEE
Confidence            45668999999999999986433   3444455443322 223456788999999999999999999998765  88999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      |+||+.+ +|.+++...  ...+++..+..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||.+....
T Consensus        76 v~e~~~~-~l~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~df~~~~~~~  149 (283)
T cd05118          76 VFEFMDT-DLYKLIKDR--QRGLPESLIKSYLYQLLQGLAFCHSHG---ILHRDLKPENLLINTEGVLKLADFGLARSFG  149 (283)
T ss_pred             EEeccCC-CHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHHHHCC---eeecCcCHHHEEECCCCcEEEeeeeeeEecC
Confidence            9999965 888888543  257899999999999999999999999   9999999999999999999999999987664


Q ss_pred             CCC--ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--ccc------ccc-
Q 011995          336 ETD--ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--RPF------LAD-  403 (473)
Q Consensus       336 ~~~--~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--~~~------~~~-  403 (473)
                      ...  .....++..|++||.+.+. .++.++||||||+++|+|++|+.||...+..+....+...  .+.      ... 
T Consensus       150 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (283)
T cd05118         150 SPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSL  229 (283)
T ss_pred             CCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhh
Confidence            432  2234567889999999776 6899999999999999999999999776654332221100  000      000 


Q ss_pred             ----ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 ----DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ----~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          ............ .......+.++.+||.+||+.||.+||++.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         230 ARNYKFSFPKKAGMPL-PKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhhhhhhccccccCH-HHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                000000000000 0112346788999999999999999999999986

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=7.5e-36  Score=291.95  Aligned_cols=242  Identities=20%  Similarity=0.329  Sum_probs=192.4

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ..||+|+||.||++....+   ...+++++.... .......+.+|+.+++.++|+||+++++++...  +..++||||+
T Consensus        26 ~~lg~g~~g~v~~~~~~~~---~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~   99 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSS---GKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG--DELWVVMEFL   99 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCC---CeEEEEEEeccc-chhHHHHHHHHHHHHHhcCCcchhheeeEEEeC--CEEEEEEecC
Confidence            6799999999999986543   334445444322 233456789999999999999999999998776  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC--
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD--  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~--  338 (473)
                      ++++|.+++..    ..+++..+..++.|++.+|+|||+.+   ++|+||+|+||+++.++.++|+|||++.......  
T Consensus       100 ~~~~L~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH~~g---ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~  172 (292)
T cd06657         100 EGGALTDIVTH----TRMNEEQIAAVCLAVLKALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR  172 (292)
T ss_pred             CCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEcccccceeccccccc
Confidence            99999998732    35899999999999999999999999   9999999999999999999999999886553322  


Q ss_pred             ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCC
Q 011995          339 ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR  418 (473)
Q Consensus       339 ~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (473)
                      .....++..|++||.+.+..++.++|+|||||++|||++|..||...........+....+             +.+.  
T Consensus       173 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~-------------~~~~--  237 (292)
T cd06657         173 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PKLK--  237 (292)
T ss_pred             ccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCC-------------cccC--
Confidence            2234567899999999888899999999999999999999999986554433222211100             0000  


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          419 FPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       419 ~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ....++..+.+++.+||+.||.+||++.++++
T Consensus       238 ~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         238 NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             CcccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            01234567889999999999999999999998

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-36  Score=295.86  Aligned_cols=270  Identities=17%  Similarity=0.227  Sum_probs=193.5

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .|...+.||+|+||.||+|..... .....+++++.....  .......+.+|+.++..++||||+++++++.+......
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~-~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   79 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNG-KDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSV   79 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCC-CCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceE
Confidence            367778999999999999996542 134455566554421  12334667899999999999999999999987655789


Q ss_pred             EEEEEeccCCChhhhhhcCC--CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC----CCcEEEec
Q 011995          254 MLIYERLFHGSLDRLIYGRS--DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK----DFSAKLSG  327 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~----~~~vkl~D  327 (473)
                      ++||||+.+ +|.+++....  ....+++..+..++.||+.||.|||+.+   |+||||||+|||++.    ++.+||+|
T Consensus        80 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~h~dlkp~Nil~~~~~~~~~~~kl~D  155 (316)
T cd07842          80 YLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGD  155 (316)
T ss_pred             EEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEEcCCCCccceEEECC
Confidence            999999965 6766663221  2236899999999999999999999999   999999999999999    89999999


Q ss_pred             cCCCcccCCCC-----ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHH-------HHh--
Q 011995          328 YGCAGHIPETD-----ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-------ERN--  392 (473)
Q Consensus       328 FGla~~~~~~~-----~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-------~~~--  392 (473)
                      ||++.......     .....++..|+|||.+.+. .++.++|||||||+++||++|++||.......       ...  
T Consensus       156 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (316)
T cd07842         156 LGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLE  235 (316)
T ss_pred             CccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHH
Confidence            99987654321     1233567889999988764 47899999999999999999999997654322       000  


Q ss_pred             -Hhhh-ccc------ccccccccccccccccCCCCC---------H--HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          393 -LVKW-SRP------FLADDCRLSLIMDPQLKGRFP---------L--KAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       393 -~~~~-~~~------~~~~~~~~~~~~~~~l~~~~~---------~--~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       ++.. ..+      ............+......++         .  ..+.++.+++.+||+.||++|||+.|+++
T Consensus       236 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         236 RIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             HHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence             0000 000      000000000000000000011         1  34567899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=5.1e-36  Score=298.70  Aligned_cols=268  Identities=16%  Similarity=0.207  Sum_probs=197.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecC--CC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARD--GS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~--~~  250 (473)
                      .++|+..+.||+|+||.||+|....+   +..+++++..... .......+.+|+.+|+.++|+||+++++++...  ..
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~---~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   80 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRS---GKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADF   80 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCC---CCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCC
Confidence            36899999999999999999985443   3445555443322 233456788899999999999999999987643  23


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||||+. |+|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+||+++.++.+||+|||+
T Consensus        81 ~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~  153 (334)
T cd07855          81 KDVYVVMDLME-SDLHHIIHS---DQPLTEEHIRYFLYQLLRGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGM  153 (334)
T ss_pred             ceEEEEEehhh-hhHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEeccccc
Confidence            57899999995 689988843   345899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCCc------cCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--cccc
Q 011995          331 AGHIPETDI------SNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--RPFL  401 (473)
Q Consensus       331 a~~~~~~~~------~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--~~~~  401 (473)
                      +........      ....++..|++||.+.+ ..++.++|||||||++|||++|+.||...........+...  .+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~  233 (334)
T cd07855         154 ARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSE  233 (334)
T ss_pred             ceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChh
Confidence            876533211      23367789999999865 45889999999999999999999999876544332211100  0000


Q ss_pred             c--c---ccccccccc-cccCCC-----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 A--D---DCRLSLIMD-PQLKGR-----FPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~--~---~~~~~~~~~-~~l~~~-----~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .  .   ...+....+ ......     +....+.++.+++.+||+.||.+||++.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         234 EVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             HhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            0  0   000000000 000000     112356889999999999999999999998874

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=5.2e-36  Score=287.23  Aligned_cols=242  Identities=19%  Similarity=0.253  Sum_probs=191.2

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||.|+||.||++...++   ++.+++++.....  .......+.+|++++++++|+||+++++.+...  ...|+||||+
T Consensus         1 lg~g~~~~vy~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKST---GDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGK--KNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECCC---CCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecC--cEEEEEEecC
Confidence            68999999999996543   3444555443321  124456789999999999999999999988765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC---
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET---  337 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~---  337 (473)
                      ++++|.+++...   ..+++..+..++.||+.||+|||+.+   ++|+||+|+||+++.++.++|+|||++......   
T Consensus        76 ~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~  149 (265)
T cd05579          76 PGGDLASLLENV---GSLDEDVARIYIAEIVLALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQI  149 (265)
T ss_pred             CCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCCCHHHeEEcCCCCEEEEecccchhcccCccc
Confidence            999999998543   26899999999999999999999999   999999999999999999999999998755332   


Q ss_pred             -------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          338 -------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       338 -------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                             ......++..|++||.+....++.++||||||+++|||++|..||...........+....            
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~------------  217 (265)
T cd05579         150 NLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGK------------  217 (265)
T ss_pred             ccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCC------------
Confidence                   1223356788999999988889999999999999999999999998765443322221100            


Q ss_pred             cccccCCCCCHH--HHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          411 MDPQLKGRFPLK--AARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       411 ~~~~l~~~~~~~--~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                          .  .++..  .+..+.+++.+||+.+|.+|||+.++.+.|+
T Consensus       218 ----~--~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         218 ----I--EWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             ----c--CCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence                0  01111  3678899999999999999999955555554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=1.3e-35  Score=290.95  Aligned_cols=269  Identities=19%  Similarity=0.204  Sum_probs=197.5

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC-
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG-  249 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~-  249 (473)
                      ...++|++.+.||+|+||.||+|....+.   +.+++++.+... .......+.+|++++++++||||+++++++.+.. 
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~---~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~   80 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTG---ELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQD   80 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCC---cEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcch
Confidence            45678999999999999999999975433   344555554432 2233456788999999999999999999886542 


Q ss_pred             -------CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc
Q 011995          250 -------SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS  322 (473)
Q Consensus       250 -------~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~  322 (473)
                             ...+++|+||+++ +|.+.+...  ...+++..+..++.||+.||+|||+.+   |+|+||||+||+++.++.
T Consensus        81 ~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~  154 (302)
T cd07864          81 ALDFKKDKGAFYLVFEYMDH-DLMGLLESG--LVHFSEDHIKSFMKQLLEGLNYCHKKN---FLHRDIKCSNILLNNKGQ  154 (302)
T ss_pred             hhhccccCCcEEEEEcccCc-cHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCc
Confidence                   2378999999976 777777432  346899999999999999999999999   999999999999999999


Q ss_pred             EEEeccCCCcccCCCC---ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-
Q 011995          323 AKLSGYGCAGHIPETD---ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-  397 (473)
Q Consensus       323 vkl~DFGla~~~~~~~---~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-  397 (473)
                      +||+|||++.......   ......+..|++||.+.+. .++.++|||||||++|||++|++||...........+... 
T Consensus       155 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~  234 (302)
T cd07864         155 IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLC  234 (302)
T ss_pred             EEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Confidence            9999999987664332   1223457789999988654 4789999999999999999999999876544433222211 


Q ss_pred             -ccc------cccccccc-----cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          398 -RPF------LADDCRLS-----LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       398 -~~~------~~~~~~~~-----~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .+.      +.......     .......... ....+..+.+++.+||+.||.+||++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         235 GSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREE-FSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             CCCChhhcccccccccccccccccccccchhhh-cCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             000      00000000     0000000000 1124678999999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-36  Score=306.71  Aligned_cols=276  Identities=18%  Similarity=0.253  Sum_probs=209.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC----CC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG----SD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~----~~  251 (473)
                      .|...+.||+|+||.||+|+   +..++..+|+|..+........+...+|+++|++++|+|||+++++-.+..    ..
T Consensus        14 ~W~~~e~LG~Ga~g~V~rgr---nketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~   90 (732)
T KOG4250|consen   14 LWEMDERLGKGAFGNVYRGR---NKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTR   90 (732)
T ss_pred             ceeehhhhcCCccceeeeec---ccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccc
Confidence            45666899999999999998   666778888887776666667788999999999999999999998766554    46


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC--CCC--cEEEec
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID--KDF--SAKLSG  327 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~--~~~--~vkl~D  327 (473)
                      ...+|||||.+|||...|.+-.+...|++.+.+.++.++..||.|||+++   ||||||||.||++-  .+|  ..||+|
T Consensus        91 ~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~---IvHRDlKP~NIvl~~Gedgq~IyKLtD  167 (732)
T KOG4250|consen   91 LPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENG---IVHRDLKPGNIVLQIGEDGQSIYKLTD  167 (732)
T ss_pred             cceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcC---ceeccCCCCcEEEeecCCCceEEeeec
Confidence            77899999999999999977656667999999999999999999999999   99999999999983  334  479999


Q ss_pred             cCCCcccCCCC-ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          328 YGCAGHIPETD-ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       328 FGla~~~~~~~-~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ||.|+.+..+. ..+.+||..|++||.+.. ..|+..+|.|||||++|+++||..||..........-+.|....-...+
T Consensus       168 fG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~  247 (732)
T KOG4250|consen  168 FGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSG  247 (732)
T ss_pred             ccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCc
Confidence            99999887654 466799999999999985 7899999999999999999999999965432211111112111111110


Q ss_pred             cccccccccc------------CCCCCHHHHHHHHHHHHHhcccCCCCCC--CHHHHHHHHHhhhcc
Q 011995          406 RLSLIMDPQL------------KGRFPLKAARTVADIALRCLQKEPSERP--TMRSIFEELDRQESR  458 (473)
Q Consensus       406 ~~~~~~~~~l------------~~~~~~~~~~~l~~li~~cl~~dP~~RP--t~~eil~~L~~l~~~  458 (473)
                      . .....+..            ...........+-.++..+|..+|.+|-  ...+....+..+...
T Consensus       248 v-~i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~dIL~~  313 (732)
T KOG4250|consen  248 V-AIGAQEEENGPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDDILNL  313 (732)
T ss_pred             e-eEeeecccCCceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHHHHhh
Confidence            0 00011100            1111233445566778888888999998  777777777766543

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=311.06  Aligned_cols=254  Identities=22%  Similarity=0.362  Sum_probs=214.7

Q ss_pred             CcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          180 DRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      .+.||.|+||+||+|.|-- +......+++|++..........++++|+.+|.+++|||+++|+|+|...   .+.||++
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s---~~qlvtq  777 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLS---TLQLVTQ  777 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccc---hHHHHHH
Confidence            3899999999999998743 33344456777777666777789999999999999999999999999764   5889999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD  338 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~  338 (473)
                      ||+.|.|.|+++.  +...+.....+.|..||++||.|||.+.   +|||||...|||+..-..+||.|||+++......
T Consensus       778 ~mP~G~LlDyvr~--hr~~igsq~lLnw~~QIAkgM~YLe~qr---lVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  778 LMPLGCLLDYVRE--HRDNIGSQDLLNWCYQIAKGMKYLEEQR---LVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             hcccchHHHHHHH--hhccccHHHHHHHHHHHHHHHHHHHhcc---hhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            9999999999965  4456888999999999999999999999   9999999999999999999999999999875442


Q ss_pred             --ccCc--ccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          339 --ISNS--SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       339 --~~~~--~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                        +...  ...+.|||-|.+....|+.++|||||||++||++| |..||.+....+..++.+       .+.++      
T Consensus       853 ~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle-------~geRL------  919 (1177)
T KOG1025|consen  853 KEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLE-------KGERL------  919 (1177)
T ss_pred             ccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHh-------ccccC------
Confidence              2222  33578999999999999999999999999999998 999999877666544332       22222      


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                          ..|..++.++..++.+||..|+..||+++++..++.++...
T Consensus       920 ----sqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  920 ----SQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             ----CCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence                23778899999999999999999999999999999987653

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.1e-36  Score=298.61  Aligned_cols=272  Identities=17%  Similarity=0.223  Sum_probs=202.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---CC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---SD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---~~  251 (473)
                      +|.+.+.||.|+||.||+|+..+.   ...+++++..... .....+.+.+|+.+++.++|+||+++++++....   ..
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~   77 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRT---GRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFN   77 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCC---CcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCccccc
Confidence            477889999999999999986443   3444454443322 2344577899999999999999999999987652   23


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..|+||||+. ++|.+++..   ...+++..+..++.|++.||.|||+.+   |+|+||||.|||++.++.++|+|||++
T Consensus        78 ~~~lv~e~~~-~~l~~~l~~---~~~l~~~~~~~i~~~l~~~l~~LH~~g---i~H~dlkp~nili~~~~~~~L~dfg~~  150 (330)
T cd07834          78 DVYIVTELME-TDLHKVIKS---PQPLTDDHIQYFLYQILRGLKYLHSAN---VIHRDLKPSNILVNSNCDLKICDFGLA  150 (330)
T ss_pred             ceEEEecchh-hhHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccCce
Confidence            6899999997 589888843   237999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC-----ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc-
Q 011995          332 GHIPETD-----ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD-  404 (473)
Q Consensus       332 ~~~~~~~-----~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~-  404 (473)
                      .......     .....++..|+|||.+.+. .++.++|||||||++|+|++|.+||......+....+.......... 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  230 (330)
T cd07834         151 RGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEED  230 (330)
T ss_pred             EeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhH
Confidence            8764432     3344668899999999887 78999999999999999999999998776544333221110000000 


Q ss_pred             ------cccccccc---cccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhhc
Q 011995          405 ------CRLSLIMD---PQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQES  457 (473)
Q Consensus       405 ------~~~~~~~~---~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~~  457 (473)
                            ........   ....   .......+..+.+++.+||+.||.+||++.+++..  |+.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         231 LKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             hhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence                  00000000   0000   00112356788999999999999999999999985  555443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1.9e-35  Score=282.01  Aligned_cols=251  Identities=21%  Similarity=0.281  Sum_probs=201.3

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|...+.||+|+||.||++....+   ...+++++..... .......+.+|+++++.++|+|++++++.+...  +..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~--~~~~   75 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSD---GKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEK--GKLC   75 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCC---CcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecC--CEEE
Confidence            477789999999999999996542   3445555554432 234567789999999999999999999988766  7899


Q ss_pred             EEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +|+||+++++|.+++.... ....+++..+..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++..
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---~~H~dl~~~nil~~~~~~~~l~d~~~~~~  152 (258)
T cd08215          76 IVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKV  152 (258)
T ss_pred             EEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHHeEEcCCCcEEECCccceee
Confidence            9999999999999986532 2467999999999999999999999998   99999999999999999999999999876


Q ss_pred             cCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .....  .....+++.|++||.+.+..++.++||||||+++++|++|..||..............      .        
T Consensus       153 ~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~------~--------  218 (258)
T cd08215         153 LSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILK------G--------  218 (258)
T ss_pred             cccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhc------C--------
Confidence            64432  2234567889999999888899999999999999999999999976653332211100      0        


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .....+...+..+.+++.+||..+|++|||+.++++.
T Consensus       219 ---~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         219 ---QYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence               0011233455788999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=9.2e-36  Score=293.04  Aligned_cols=267  Identities=18%  Similarity=0.197  Sum_probs=193.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|...+.||+|+||.||+|....+.   ..+++++..... .......+.+|+++++.++|+||+++++++....   
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTG---RVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKS   83 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCC---cEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccc
Confidence            578999999999999999999865432   334455443332 2222356789999999999999999999876532   


Q ss_pred             ---CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 ---SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                         ...+++|+||+.+ +|...+..  ....+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.++|+
T Consensus        84 ~~~~~~~~lv~~~~~~-~l~~~~~~--~~~~~~~~~~~~i~~~l~~al~~lH~~~---i~H~dl~p~nil~~~~~~~~l~  157 (311)
T cd07866          84 KRKRGSVYMVTPYMDH-DLSGLLEN--PSVKLTESQIKCYMLQLLEGINYLHENH---ILHRDIKAANILIDNQGILKIA  157 (311)
T ss_pred             cccCceEEEEEecCCc-CHHHHHhc--cccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEC
Confidence               1357999999965 77777643  2446999999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCCc-------------cCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          327 GYGCAGHIPETDI-------------SNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       327 DFGla~~~~~~~~-------------~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      |||++........             ....++..|+|||.+.+. .++.++|||||||++|||++|.+||.+........
T Consensus       158 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~  237 (311)
T cd07866         158 DFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLH  237 (311)
T ss_pred             cCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            9999876532211             122456789999988654 47899999999999999999999998766544333


Q ss_pred             Hhhhc-ccccccc----ccccccc--------ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          393 LVKWS-RPFLADD----CRLSLIM--------DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       393 ~~~~~-~~~~~~~----~~~~~~~--------~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .+... .......    ..+....        .+.+... .......+.+|+.+||+.||.+|||+.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         238 LIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEER-FGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHH-cccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            22110 0000000    0000000        0000000 0123367889999999999999999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=3.3e-35  Score=289.99  Aligned_cols=260  Identities=19%  Similarity=0.245  Sum_probs=188.4

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      +.+|.|+++.||++..     ..+.+++++.... ........+.+|+++++.++|+||+++++++...  +..+++|||
T Consensus         8 ~~~~~~~~v~~~~~~~-----~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~--~~~~~~~e~   80 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-----TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVD--SELYVVSPL   80 (314)
T ss_pred             HhhcCCceEEEEEecC-----CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecC--CeEEEEEec
Confidence            4445555555555542     3455566665544 2445567899999999999999999999998766  789999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC-
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-  338 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~-  338 (473)
                      +++|+|.+++.... ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||.+....... 
T Consensus        81 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~LH~~~---ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~  156 (314)
T cd08216          81 MAYGSCEDLLKTHF-PEGLPELAIAFILKDVLNALDYIHSKG---FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGK  156 (314)
T ss_pred             cCCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCcceEEEecCCceEEecCccceeeccccc
Confidence            99999999996532 345889999999999999999999999   9999999999999999999999999886543221 


Q ss_pred             --------ccCcccccccCChhhhhcC--CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhccccccc----
Q 011995          339 --------ISNSSVAAANLSVETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLAD----  403 (473)
Q Consensus       339 --------~~~~~~t~~y~aPE~~~~~--~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~----  403 (473)
                              .....++..|+|||++...  .++.++|||||||++|||++|..||......... ..+.-..+....    
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (314)
T cd08216         157 RQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTY  236 (314)
T ss_pred             cccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCch
Confidence                    1223456789999998663  4889999999999999999999999865433221 111100000000    


Q ss_pred             ---cccccc----cccc----ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 ---DCRLSL----IMDP----QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ---~~~~~~----~~~~----~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ......    ..++    ..........+.++.+|+.+||..||++|||+.++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         237 PLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             hhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence               000000    0000    01111234566789999999999999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=2e-35  Score=283.43  Aligned_cols=253  Identities=16%  Similarity=0.217  Sum_probs=192.9

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|.+.+.||+|+||.||++.............++..... .......++.+|+.+++.++||||+++++++.+.  ...+
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   78 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLER--DAFC   78 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcC--CceE
Confidence            477789999999999999986543221111111111111 1223345677899999999999999999998765  6789


Q ss_pred             EEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||+++++|.+++... .....+++..++.++.|++.||.|||+.+   ++|+||+|+||+++. +.++|+|||++..
T Consensus        79 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~~l~~~nili~~-~~~~l~d~g~~~~  154 (260)
T cd08222          79 IITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR---ILHRDLKAKNIFLKN-NLLKIGDFGVSRL  154 (260)
T ss_pred             EEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC---ccccCCChhheEeec-CCEeecccCceee
Confidence            999999999999988542 23457899999999999999999999999   999999999999975 5699999999876


Q ss_pred             cCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .....  .....++..|++||.+.+..++.++|+||||+++|+|++|..||...........+.                
T Consensus       155 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~----------------  218 (260)
T cd08222         155 LMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIV----------------  218 (260)
T ss_pred             cCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH----------------
Confidence            54322  223456789999999988888999999999999999999999997544322211110                


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      . ......+...+.++.+++.+||..||++||++.++++.
T Consensus       219 ~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         219 E-GPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             c-CCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence            0 00111244566789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.2e-35  Score=297.03  Aligned_cols=278  Identities=18%  Similarity=0.247  Sum_probs=199.8

Q ss_pred             CHHHHHHH----hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCccc
Q 011995          166 PLDEVAAA----CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCK  240 (473)
Q Consensus       166 ~~~el~~~----~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~  240 (473)
                      ..+|+..+    .++|...+.||+|+||.||+|....   .+..+++++..... .......+.+|+.+++.++|+||++
T Consensus         2 ~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~   78 (342)
T cd07879           2 YREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKR---TGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIG   78 (342)
T ss_pred             chhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCC---CCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccc
Confidence            34455544    3789999999999999999998543   23444555443321 2233456889999999999999999


Q ss_pred             ceeeeecCCC----CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          241 LLGFHARDGS----DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       241 l~g~~~~~~~----~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                      +++++.....    ..+++|+||+.. +|..++     +..+++..+..++.|++.||+|||+++   |+||||||+|||
T Consensus        79 ~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~-----~~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dlkp~NIl  149 (342)
T cd07879          79 LLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIM-----GHPLSEDKVQYLVYQMLCGLKYIHSAG---IIHRDLKPGNLA  149 (342)
T ss_pred             hhheecccccCCCCceEEEEeccccc-CHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEE
Confidence            9998865421    356999999954 777665     235889999999999999999999999   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      ++.++.+||+|||++..... ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||.+.........+.
T Consensus       150 l~~~~~~kL~dfg~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~  228 (342)
T cd07879         150 VNEDCELKILDFGLARHADA-EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQIL  228 (342)
T ss_pred             ECCCCCEEEeeCCCCcCCCC-CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99999999999999876532 2234466788999999876 458899999999999999999999998765433322221


Q ss_pred             hccccccc-------ccccccccc--cc-cCCCC---CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          396 WSRPFLAD-------DCRLSLIMD--PQ-LKGRF---PLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       396 ~~~~~~~~-------~~~~~~~~~--~~-l~~~~---~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                      ........       .........  +. ....+   ....+..+.+|+.+||+.||.+||++.+++..  ++.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~  304 (342)
T cd07879         229 KVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFR  304 (342)
T ss_pred             HhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcc
Confidence            11000000       000000000  00 00000   11345678999999999999999999999955  66554

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=9.7e-36  Score=290.15  Aligned_cols=257  Identities=18%  Similarity=0.237  Sum_probs=197.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      +|+..+.||+|+||.||+++...+....+.+++++.+...   .......+.+|++++.++ +|+||+++++.+..+  .
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~--~   78 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTD--T   78 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecC--C
Confidence            4677899999999999999865444444555566544221   123346688999999999 699999999888665  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++|+|.+++..   ...+++..+..++.|++.+|.|||+.+   ++|+||+|.||+++.++.++|+|||++
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~ql~~~l~~lH~~~---~~H~dl~p~nil~~~~~~~~l~dfg~~  152 (288)
T cd05583          79 KLHLILDYVNGGELFTHLYQ---REHFTESEVRVYIAEIVLALDHLHQLG---IIYRDIKLENILLDSEGHVVLTDFGLS  152 (288)
T ss_pred             EEEEEEecCCCCcHHHHHhh---cCCcCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEEECccc
Confidence            88999999999999999853   245899999999999999999999998   999999999999999999999999998


Q ss_pred             cccCCCCc---cCcccccccCChhhhhcCC--CCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhhccccccccc
Q 011995          332 GHIPETDI---SNSSVAAANLSVETLERGL--LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADDC  405 (473)
Q Consensus       332 ~~~~~~~~---~~~~~t~~y~aPE~~~~~~--~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~~~~~~~~~~  405 (473)
                      ..+.....   ....++..|++||.+.+..  .+.++||||||+++|||++|..||........ ..+...   ....  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~---~~~~--  227 (288)
T cd05583         153 KEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRR---ILKS--  227 (288)
T ss_pred             cccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHH---HHcc--
Confidence            76543321   2235678999999987765  78899999999999999999999964322111 111100   0000  


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                            .    ...+...+..+.+++.+||+.||++|||+.++.+.|+..
T Consensus       228 ------~----~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         228 ------K----PPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             ------C----CCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence                  0    112334557889999999999999999998888777653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.5e-35  Score=290.12  Aligned_cols=254  Identities=21%  Similarity=0.346  Sum_probs=191.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||.|+||.||+|...+.   .+.++++.............+..|+.++.+.. |+||+++++++.++  ..
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~   88 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKT---GHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITD--SD   88 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCC---CeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecC--Ce
Confidence            35678889999999999999997543   34445555543333344566778888777774 99999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .++||||+. ++|.+++...  ...+++..+..++.|++.||+|||+. +   |+||||+|+||+++.++.+||+|||++
T Consensus        89 ~~~v~e~~~-~~l~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~~~~---i~H~dl~p~nill~~~~~~kL~dfg~~  162 (296)
T cd06618          89 VFICMELMS-TCLDKLLKRI--QGPIPEDILGKMTVAIVKALHYLKEKHG---VIHRDVKPSNILLDASGNVKLCDFGIS  162 (296)
T ss_pred             EEEEeeccC-cCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhhCC---EecCCCcHHHEEEcCCCCEEECccccc
Confidence            999999984 5777776442  33789999999999999999999974 6   999999999999999999999999998


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCC----CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGL----LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~----~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ..+.... .....++..|+|||.+.+..    ++.++||||||+++|||++|..||......... +....    ...  
T Consensus       163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-~~~~~----~~~--  235 (296)
T cd06618         163 GRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEV-LTKIL----QEE--  235 (296)
T ss_pred             hhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHH-HHHHh----cCC--
Confidence            7654322 22335678899999987553    788999999999999999999999753322111 11100    000  


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                           .+...  ....++.++.+|+.+||..||.+||++.++++.-
T Consensus       236 -----~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~  274 (296)
T cd06618         236 -----PPSLP--PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHP  274 (296)
T ss_pred             -----CCCCC--CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCh
Confidence                 00000  0113457789999999999999999999998763

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-35  Score=287.36  Aligned_cols=264  Identities=19%  Similarity=0.270  Sum_probs=192.5

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |.+.+.||+|+||+||+|+..+..   +.++++...............+|+..+.+++ |+||+++++++..+  +..++
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~--~~~~l   75 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETG---ELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFREN--DELYF   75 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCC---cEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcC--CcEEE
Confidence            566789999999999999975542   3333443322222223334567999999998 99999999998775  88999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+ +|+|.+++.... ...+++..+..++.|++.+|.|||+.+   ++|+||+|+||+++.++.++|+|||++....
T Consensus        76 v~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~  150 (283)
T cd07830          76 VFEYM-EGNLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHIHKHG---FFHRDLKPENLLVSGPEVVKIADFGLAREIR  150 (283)
T ss_pred             EEecC-CCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCCEEEeecccceecc
Confidence            99999 889998886532 356899999999999999999999999   9999999999999999999999999997664


Q ss_pred             CCC-ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hhcccccccc----cccc
Q 011995          336 ETD-ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLADD----CRLS  408 (473)
Q Consensus       336 ~~~-~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~~~~~~----~~~~  408 (473)
                      ... .....++..|+|||++.. ..++.++||||||++++||++|++||...........+ .+......+.    ..+.
T Consensus       151 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd07830         151 SRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLA  230 (283)
T ss_pred             CCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhh
Confidence            432 233456789999998854 45789999999999999999999999766543322211 1100000000    0000


Q ss_pred             cccccccC-------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          409 LIMDPQLK-------GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       409 ~~~~~~l~-------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...+..+.       .......+.++.+|+.+||+.||++|||+.|++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         231 SKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             ccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            00000000       0001122577999999999999999999999975

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.9e-35  Score=291.17  Aligned_cols=251  Identities=22%  Similarity=0.280  Sum_probs=193.6

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |...+.||+|+||.||+|+...+.   ..++++.....  ........+.+|+++++.++|+|++++++++...  ...+
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   91 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNS---EVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE--HTAW   91 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCC---cEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcC--CeeE
Confidence            556688999999999999965432   33444444332  2333456788999999999999999999998775  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+. |+|.+++...  ...+++..+..++.|++.||.|||+.+   ++||||+|+|||++.++.++|+|||++...
T Consensus        92 lv~e~~~-~~l~~~~~~~--~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  165 (308)
T cd06634          92 LVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIM  165 (308)
T ss_pred             EEEEccC-CCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHhEEECCCCcEEECCcccceee
Confidence            9999996 6888777432  345899999999999999999999998   999999999999999999999999998765


Q ss_pred             CCCCccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ...  ....++..|+|||.+.   ...++.++|||||||++|||++|..||...........+.  ..      .     
T Consensus       166 ~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~--~~------~-----  230 (308)
T cd06634         166 APA--NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIA--QN------E-----  230 (308)
T ss_pred             cCc--ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHh--hc------C-----
Confidence            432  2345678999999985   3457889999999999999999999987654332221111  00      0     


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .+.   ......+..+.+||.+||..+|.+||++.++++...-+.
T Consensus       231 ~~~---~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~  272 (308)
T cd06634         231 SPA---LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR  272 (308)
T ss_pred             CCC---cCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence            000   012245677899999999999999999999997754333

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.7e-35  Score=296.40  Aligned_cols=275  Identities=14%  Similarity=0.182  Sum_probs=201.1

Q ss_pred             CCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccce
Q 011995          164 NFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLL  242 (473)
Q Consensus       164 ~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~  242 (473)
                      .....++..++++|...+.||+|+||.||+|....   .++.+++|+..... .....+.+.+|+.++.+++|+||++++
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~   82 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTK---TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLL   82 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcC---CCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCccccee
Confidence            34556777889999999999999999999998543   33455555443221 223346688999999999999999999


Q ss_pred             eeeecCC----CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC
Q 011995          243 GFHARDG----SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID  318 (473)
Q Consensus       243 g~~~~~~----~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~  318 (473)
                      +++....    ....+++++++ +++|.+++..    ..+++..+..++.|++.||+|||+.+   |+||||||+||+++
T Consensus        83 ~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~  154 (345)
T cd07877          83 DVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVN  154 (345)
T ss_pred             eeeeecccccccccEEEEehhc-ccCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEc
Confidence            9876431    13478888877 7899888743    35899999999999999999999999   99999999999999


Q ss_pred             CCCcEEEeccCCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc
Q 011995          319 KDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       319 ~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~  397 (473)
                      .++.+||+|||++..... ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||...........+...
T Consensus       155 ~~~~~kl~dfg~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~  233 (345)
T cd07877         155 EDCELKILDFGLARHTDD-EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRL  233 (345)
T ss_pred             CCCCEEEecccccccccc-cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999876532 2234466889999999866 46889999999999999999999999765543322211110


Q ss_pred             cc--------cccccc--c----cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          398 RP--------FLADDC--R----LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       398 ~~--------~~~~~~--~----~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..        .+....  .    +......... ......+.++.+||.+||+.||.+||++.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         234 VGTPGAELLKKISSESARNYIQSLTQMPKMNFA-NVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             hCCCCHHHHhhcccHhHHHHHHHhcccCCcchh-hhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            00        000000  0    0000000000 0011245678999999999999999999998865

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=8.5e-36  Score=288.48  Aligned_cols=247  Identities=20%  Similarity=0.283  Sum_probs=198.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~  251 (473)
                      ++|...+.||.|+||.||+|....+   +..+++++....  ........+.+|++++++++ |+||+++++++..+  +
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~---~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~--~   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKET---NKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDE--E   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCC---CCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCC--c
Confidence            4788889999999999999986543   344555554432  12334567889999999998 99999999988765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+.+++|.+++...   ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~ql~~~l~~Lh~~~---~~H~dl~~~ni~i~~~~~~~l~df~~~  149 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKY---GSLDEKCTRFYAAEILLALEYLHSKG---IIHRDLKPENILLDKDMHIKITDFGTA  149 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEecCCccc
Confidence            899999999999999999543   36999999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCCc----------------------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH
Q 011995          332 GHIPETDI----------------------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE  389 (473)
Q Consensus       332 ~~~~~~~~----------------------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~  389 (473)
                      ........                      ....++..|++||.+.+..++.++||||||+++++|++|+.||.......
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~  229 (280)
T cd05581         150 KVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL  229 (280)
T ss_pred             cccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence            76543221                      12345788999999988889999999999999999999999998765332


Q ss_pred             HHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH----HHHHH
Q 011995          390 ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM----RSIFE  450 (473)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~----~eil~  450 (473)
                      ....+.                  .....++...+..+.+|+.+||+.||.+||++    +++++
T Consensus       230 ~~~~~~------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         230 TFQKIL------------------KLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HHHHHH------------------hcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            221111                  00112234446789999999999999999999    77764

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=2.4e-35  Score=291.18  Aligned_cols=246  Identities=22%  Similarity=0.307  Sum_probs=191.2

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |...+.||+|+||.||+|+...+   +..+++++.....  .......+.+|+++++.++|+|++++++++.+.  +..|
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~---~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~   97 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHT---NEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKE--HTAW   97 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCC---CcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeC--CEEE
Confidence            55567899999999999985433   3444555544321  233446788999999999999999999998876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+. |+|.+++...  ...+++..+..++.|++.+|.|||+.+   ++|+||+|+||+++.++.+||+|||++...
T Consensus        98 lv~e~~~-~~l~~~l~~~--~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dl~p~nili~~~~~~kL~dfg~~~~~  171 (313)
T cd06633          98 LVMEYCL-GSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKS  171 (313)
T ss_pred             EEEecCC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChhhEEECCCCCEEEeecCCCccc
Confidence            9999995 5787777432  346899999999999999999999999   999999999999999999999999988654


Q ss_pred             CCCCccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..  .....++..|+|||++.   ...++.++|||||||++|||++|..||...........+....             
T Consensus       172 ~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~-------------  236 (313)
T cd06633         172 SP--ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQND-------------  236 (313)
T ss_pred             CC--CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcC-------------
Confidence            22  23456788999999984   4568899999999999999999999997765433322111100             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .+..   .....+..+.+|+.+||+.+|.+||++.+++..
T Consensus       237 ~~~~---~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         237 SPTL---QSNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             CCCC---CccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0000   012334678999999999999999999999964

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-35  Score=280.39  Aligned_cols=247  Identities=24%  Similarity=0.383  Sum_probs=198.1

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +|+..+.||+|++|.||++......   +.++++...... .......+.+|++++.+++|+|++++++++...  ...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~---~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~--~~~~   75 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETG---DFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETS--DSLY   75 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCC---cEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeC--CEEE
Confidence            4777899999999999999865432   334444443332 224567899999999999999999999998765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+.+++|.+++...   ..+++..+..++.|++.+|.|||+.+   |+|+||+|+||+++.++.++|+|||++...
T Consensus        76 ~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  149 (254)
T cd06627          76 IILEYAENGSLRQIIKKF---GPFPESLVAVYVYQVLQGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKL  149 (254)
T ss_pred             EEEecCCCCcHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEECCCCCEEEeccccceec
Confidence            999999999999998543   46899999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .....  ....++..|++||...+..++.++|||+||+++|+|++|..||.............      .          
T Consensus       150 ~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~------~----------  213 (254)
T cd06627         150 NDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIV------Q----------  213 (254)
T ss_pred             CCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHh------c----------
Confidence            54332  23466789999999988888999999999999999999999997654322111110      0          


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .....++...+..+.+++.+||..+|++||++.+++.
T Consensus       214 -~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         214 -DDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             -cCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence             0011223455688999999999999999999999985

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.8e-35  Score=288.55  Aligned_cols=253  Identities=19%  Similarity=0.263  Sum_probs=194.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      +|+..+.||.|+||.||++....+...+..+++++.....   .....+.+.+|+.++.++ +|+||+.+++++..+  .
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~--~   78 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTD--T   78 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecC--C
Confidence            4778899999999999999865433445556666554321   223346788999999999 699999999888765  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++++|.+++...   ..+++..+..++.|++.||.|||+.+   ++||||+|+|||++.++.+||+|||++
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~  152 (290)
T cd05613          79 KLHLILDYINGGELFTHLSQR---ERFKEQEVQIYSGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLS  152 (290)
T ss_pred             eEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEECCCCCEEEeeCccc
Confidence            889999999999999998543   45889999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCCc---cCcccccccCChhhhhcC--CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhccccccccc
Q 011995          332 GHIPETDI---SNSSVAAANLSVETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLADDC  405 (473)
Q Consensus       332 ~~~~~~~~---~~~~~t~~y~aPE~~~~~--~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~~~  405 (473)
                      ........   ....++..|++||.+.+.  .++.++||||||+++|+|++|..||......... .....   ....  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~---~~~~--  227 (290)
T cd05613         153 KEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRR---ILKS--  227 (290)
T ss_pred             eecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHH---hhcc--
Confidence            76543221   234578899999998653  4678999999999999999999999643221111 11110   0000  


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                            .    ..++...+..+.+++.+||+.||++||     ++.+++..
T Consensus       228 ------~----~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~  268 (290)
T cd05613         228 ------E----PPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKH  268 (290)
T ss_pred             ------C----CCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcC
Confidence                  0    112344567889999999999999997     67777654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-35  Score=284.32  Aligned_cols=246  Identities=20%  Similarity=0.179  Sum_probs=186.2

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHH-HhCCCCCcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTL-ASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l-~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      +.||.|+||.||+|.....   ++.+++++.....  .......+..|..++ ...+|+||+++++++...  +..++|+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~~lv~   76 (260)
T cd05611           2 KPISKGAFGSVYLAKKRST---GDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSK--DYLYLVM   76 (260)
T ss_pred             ccCCcCCCeeEEEEEecCC---CCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcC--CeEEEEE
Confidence            5689999999999986443   3344555443221  112223445555544 445899999999998765  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      ||+++++|.+++..   ...+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++..... 
T Consensus        77 e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-  149 (260)
T cd05611          77 EYLNGGDCASLIKT---LGGLPEDWAKQYIAEVVLGVEDLHQRG---IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE-  149 (260)
T ss_pred             eccCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEeecccceeccc-
Confidence            99999999999853   246899999999999999999999999   99999999999999999999999999876533 


Q ss_pred             CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCC
Q 011995          338 DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG  417 (473)
Q Consensus       338 ~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  417 (473)
                       .....++..|++||.+.+..++.++||||||+++|||++|..||...........+.....              ....
T Consensus       150 -~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~--------------~~~~  214 (260)
T cd05611         150 -NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRI--------------NWPE  214 (260)
T ss_pred             -cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhccc--------------CCCC
Confidence             2234567889999999888889999999999999999999999987654432222111000              0011


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       418 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .....++..+.+++.+||+.||++||++.++.+.|.
T Consensus       215 ~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         215 EVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             cccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHc
Confidence            112245688999999999999999997765555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-35  Score=284.56  Aligned_cols=265  Identities=17%  Similarity=0.199  Sum_probs=194.3

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhC---CCCCcccceeeeecCCC--
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASL---QHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l---~HpnIv~l~g~~~~~~~--  250 (473)
                      |++.+.||+|+||.||+|....   ..+.+++++.+.... ......+.+|+.++.++   .|+||+++++++.....  
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~---~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~   77 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLN---TGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDR   77 (287)
T ss_pred             CeEEEEecccCceEEEEEEECC---CCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCC
Confidence            5667899999999999999754   234555665554332 22235567788877766   59999999999876521  


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       ...+++|||+. ++|.+++.... ...+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.+||+|||
T Consensus        78 ~~~~~l~~e~~~-~~l~~~l~~~~-~~~l~~~~~~~~~~~i~~al~~LH~~~---i~h~~l~~~nili~~~~~~~l~dfg  152 (287)
T cd07838          78 ELKLTLVFEHVD-QDLATYLSKCP-KPGLPPETIKDLMRQLLRGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFG  152 (287)
T ss_pred             CceeEEEehhcc-cCHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhEEEccCCCEEEeccC
Confidence             23899999996 48988885432 346899999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh-cccccccc---
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW-SRPFLADD---  404 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~-~~~~~~~~---  404 (473)
                      ++....... .....++..|+|||++.+..++.++|||||||++|||++|.+||......+....+.. ........   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (287)
T cd07838         153 LARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPR  232 (287)
T ss_pred             cceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCC
Confidence            987764332 2333567889999999988899999999999999999999999987654433222110 00000000   


Q ss_pred             ------cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 ------CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ------~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                            ........... .......+..+.+++.+||+.||.+||++.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         233 NVSLPRSSFPSYTPRSF-KSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             Ccccchhhcccccccch-hhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                  00000000000 1112245678899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=1.1e-35  Score=297.23  Aligned_cols=264  Identities=19%  Similarity=0.284  Sum_probs=192.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC----
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS----  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~----  250 (473)
                      .+|...+.||.|+||.||+|....   +.+.+++++..... ....+.+.+|+++++.++||||+++++++...+.    
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~---~~~~v~iK~i~~~~-~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSD---CDKRVAVKKIVLTD-PQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTE   80 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECC---CCcEEEEEEEecCC-CchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccc
Confidence            678889999999999999998543   33444555444332 2445678899999999999999999987665422    


Q ss_pred             --------CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCC
Q 011995          251 --------DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDF  321 (473)
Q Consensus       251 --------~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~  321 (473)
                              ...++||||+. ++|.+++..    ..+++..+..++.||+.||.|||+.+   |+||||||+||+++ .++
T Consensus        81 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~~g---ivH~dikp~Nili~~~~~  152 (342)
T cd07854          81 DVGSLTELNSVYIVQEYME-TDLANVLEQ----GPLSEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANVFINTEDL  152 (342)
T ss_pred             ccccccccceEEEEeeccc-ccHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCc
Confidence                    35789999996 589888732    35899999999999999999999999   99999999999997 456


Q ss_pred             cEEEeccCCCcccCCCC-----ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          322 SAKLSGYGCAGHIPETD-----ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~-----~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      .+||+|||++.......     .....++..|+|||.+.+ ..++.++|||||||++|||++|+.||.............
T Consensus       153 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~  232 (342)
T cd07854         153 VLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLIL  232 (342)
T ss_pred             eEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            78999999987653221     122356788999998754 457889999999999999999999998776544433322


Q ss_pred             hcccccccccc--c----ccccc-cccCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          396 WSRPFLADDCR--L----SLIMD-PQLKG-----RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       396 ~~~~~~~~~~~--~----~~~~~-~~l~~-----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...+.......  .    ..... .....     .+....+.++.+|+.+||+.||.+|||+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         233 ESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             HhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            22111110000  0    00000 00000     011235578899999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=2.7e-35  Score=284.17  Aligned_cols=252  Identities=18%  Similarity=0.181  Sum_probs=190.7

Q ss_pred             CHHHHHHHhcccccCcce--eecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccce
Q 011995          166 PLDEVAAACHNFFSDRCI--SEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLL  242 (473)
Q Consensus       166 ~~~el~~~~~~f~~~~~l--G~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~  242 (473)
                      +..++....++|.+.+.+  |+|+||.||++....+   ...+++++......    ..  .|+.....+ +|+||++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~---~~~~~~k~~~~~~~----~~--~e~~~~~~~~~h~~iv~~~   75 (267)
T PHA03390          5 SLSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPT---QKLFVQKIIKAKNF----NA--IEPMVHQLMKDNPNFIKLY   75 (267)
T ss_pred             HHHHHHHHHHhhccccceeecCCCceEEEEEEEcCC---CcEEEEEEEehhhc----ch--hhHHHHHHhhcCCCEEEEE
Confidence            345666677888887777  9999999999985443   34444444432111    11  122222222 799999999


Q ss_pred             eeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-
Q 011995          243 GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-  321 (473)
Q Consensus       243 g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-  321 (473)
                      +++...  +..++||||+++++|.+++...   ..+++..+..++.|++.||.|||+.+   ++||||||+||+++.++ 
T Consensus        76 ~~~~~~--~~~~iv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~  147 (267)
T PHA03390         76 YSVTTL--KGHVLIMDYIKDGDLFDLLKKE---GKLSEAEVKKIIRQLVEALNDLHKHN---IIHNDIKLENVLYDRAKD  147 (267)
T ss_pred             EEEecC--CeeEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEeCCCC
Confidence            998876  7899999999999999999543   37999999999999999999999999   99999999999999988 


Q ss_pred             cEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          322 SAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      .++|+|||++......  ....++..|+|||++.+..++.++|||||||++|||++|..||....... .....+.... 
T Consensus       148 ~~~l~dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~-  223 (267)
T PHA03390        148 RIYLCDYGLCKIIGTP--SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE-LDLESLLKRQ-  223 (267)
T ss_pred             eEEEecCccceecCCC--ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch-hhHHHHHHhh-
Confidence            9999999998765432  23457889999999998889999999999999999999999997543221 1111111000 


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-HHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-MRSIFE  450 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~eil~  450 (473)
                                ..  ........+..+.+|+.+||+.||.+||+ ++++++
T Consensus       224 ----------~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        224 ----------QK--KLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             ----------cc--cCCcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence                      00  00123356788999999999999999996 688874

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-37  Score=280.85  Aligned_cols=263  Identities=21%  Similarity=0.279  Sum_probs=202.3

Q ss_pred             CCCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCc
Q 011995          160 GTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNL  238 (473)
Q Consensus       160 ~~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnI  238 (473)
                      .....|+-+.|+..       ..||.|.||+|++-.   ....++.+|||.++........++++.|.+...+- +.|||
T Consensus        56 ~~~~~F~~~~Lqdl-------g~iG~G~fG~V~KM~---hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~I  125 (361)
T KOG1006|consen   56 AHLHTFTSDNLQDL-------GEIGNGAFGTVNKML---HKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNI  125 (361)
T ss_pred             ccccccccchHHHH-------HHhcCCcchhhhhhh---cCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHH
Confidence            34555777777665       889999999999997   45567788888888777777788899999876655 79999


Q ss_pred             ccceeeeecCCCCceEEEEEeccCCChhhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR--SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       239 v~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                      |++||.+..+  +..|+.||+|+ .||+.+...-  .....+++..+-.|+...+.||.||...-  .|||||+||+|||
T Consensus       126 VkfyGa~F~E--GdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNIL  200 (361)
T KOG1006|consen  126 VKFYGALFSE--GDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNIL  200 (361)
T ss_pred             HHHhhhhhcC--CceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheE
Confidence            9999998876  66799999994 4776543210  12346889999999999999999998876  5999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCC-CccCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH-HHh
Q 011995          317 IDKDFSAKLSGYGCAGHIPET-DISNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-ERN  392 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-~~~  392 (473)
                      |+..|.+||||||++..+... ..+...|...|||||.+..  ..|+.+|||||||++|||+.||..||.+-+... +..
T Consensus       201 ldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~  280 (361)
T KOG1006|consen  201 LDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLC  280 (361)
T ss_pred             EecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHH
Confidence            999999999999998765433 2234467789999999943  348999999999999999999999998765422 111


Q ss_pred             HhhhcccccccccccccccccccC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLK-GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .+-...+             |.+. ..-..+.+..+..||..||.+|-..||.+.++++
T Consensus       281 ~Vv~gdp-------------p~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  281 QVVIGDP-------------PILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             HHHcCCC-------------CeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            1111111             0111 0112457788999999999999999999998875

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=2e-35  Score=294.51  Aligned_cols=264  Identities=18%  Similarity=0.196  Sum_probs=190.9

Q ss_pred             cccc-cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh-------------hhHhHHHHHHHHHhCCCCCccc
Q 011995          175 HNFF-SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ-------------GVKEFINDVNTLASLQHPNLCK  240 (473)
Q Consensus       175 ~~f~-~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~Ei~~l~~l~HpnIv~  240 (473)
                      ++|. ..+.||.|+||+||+|....   ..+.+++++........             ....+.+|+++++.++|+||++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   84 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTL---TGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMG   84 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECC---CCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceee
Confidence            3454 34779999999999998543   23444555544322111             1125789999999999999999


Q ss_pred             ceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       241 l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      +++++...  +..++||||+. |+|.+++..   ...+++.....++.|++.||.|||+.+   |+|+||+|+||+++.+
T Consensus        85 ~~~~~~~~--~~~~lv~e~~~-~~l~~~l~~---~~~~~~~~~~~~~~ql~~aL~~LH~~~---i~H~dl~~~nill~~~  155 (335)
T PTZ00024         85 LVDVYVEG--DFINLVMDIMA-SDLKKVVDR---KIRLTESQVKCILLQILNGLNVLHKWY---FMHRDLSPANIFINSK  155 (335)
T ss_pred             eeEEEecC--CcEEEEEeccc-cCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHeEECCC
Confidence            99998765  78999999996 699998843   345899999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCC----------------CCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          321 FSAKLSGYGCAGHIPE----------------TDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~----------------~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      +.++|+|||++.....                .......++..|+|||.+.+. .++.++|||||||++|||++|.+||.
T Consensus       156 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~  235 (335)
T PTZ00024        156 GICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFP  235 (335)
T ss_pred             CCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999876541                111223456789999998764 36899999999999999999999998


Q ss_pred             CCChHHHHhHhh-hccccccccc----ccc--cccccccCC---CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          384 SRHPKEERNLVK-WSRPFLADDC----RLS--LIMDPQLKG---RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       384 ~~~~~~~~~~~~-~~~~~~~~~~----~~~--~~~~~~l~~---~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .....+....+. ..........    .+.  .........   ......+.++.+++.+||+.||++||++.+++.
T Consensus       236 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        236 GENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             CCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            776544322221 1000000000    000  000000000   011234577899999999999999999999986

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=2.5e-35  Score=293.05  Aligned_cols=269  Identities=15%  Similarity=0.220  Sum_probs=197.8

Q ss_pred             HHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          170 VAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       170 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      +...+++|+..+.||.|+||.||+|....   ..+.+++|..... ......+.+.+|++++..++||||+++++++...
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   81 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQL---TGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISP   81 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECC---CCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecC
Confidence            34567899999999999999999998543   3344445543322 2233456788999999999999999999988654


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      + ...++|+||+ +++|.+++..    ..+++..+..++.|++.||.|||+.+   |+|+||+|+|||++.++.++|+||
T Consensus        82 ~-~~~~lv~e~~-~~~L~~~~~~----~~~~~~~~~~~~~ql~~aL~~LH~~~---iiH~dl~p~Nili~~~~~~~l~df  152 (328)
T cd07856          82 L-EDIYFVTELL-GTDLHRLLTS----RPLEKQFIQYFLYQILRGLKYVHSAG---VVHRDLKPSNILINENCDLKICDF  152 (328)
T ss_pred             C-CcEEEEeehh-ccCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEeECCCCCEEeCcc
Confidence            3 6789999998 5689888842    35788899999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hcccc------
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSRPF------  400 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~~~------  400 (473)
                      |++...... .....++..|++||.+.+ ..++.++|||||||++|||++|..||...........+. +....      
T Consensus       153 g~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  231 (328)
T cd07856         153 GLARIQDPQ-MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVIN  231 (328)
T ss_pred             ccccccCCC-cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            998755332 233456788999998866 568999999999999999999999997765432221111 00000      


Q ss_pred             -cccccccccccccccCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 -LADDCRLSLIMDPQLKGRFP-----LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 -~~~~~~~~~~~~~~l~~~~~-----~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       .........+..-......+     ..++..+.++|.+||+.+|++||++.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         232 TICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             hccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence             00000000000000001111     1345789999999999999999999999876

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=306.95  Aligned_cols=258  Identities=20%  Similarity=0.299  Sum_probs=212.3

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeec
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHAR  247 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~  247 (473)
                      .+..-++.|++...||.|.+|.||+++..+   +....++|++..  .....+++..|..+|+.. .|||++.++|++.-
T Consensus        13 ~lpdp~d~~ei~evig~Gtygkv~k~k~~~---~~~~aa~kI~~~--~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k   87 (953)
T KOG0587|consen   13 SLPDPADIFEIIEVIGNGTYGKVYKGRHVK---TGQLAAIKIMDP--TEDEEEEIELEYNMLKKYSHHPNVATFYGAFIK   87 (953)
T ss_pred             hCCCCCCccEEEEEEeeccceeEEEEeeee---cCceeeeEeecC--CccccHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence            333345678888999999999999998443   333444554443  344557788899999887 79999999999864


Q ss_pred             ---CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          248 ---DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       248 ---~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                         .+.+++|||||||.+||..|++.... +..+.|..+..|++.++.||.+||.+.   ++|||||-.|||++.++.||
T Consensus        88 ~~~~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH~nk---viHRDikG~NiLLT~e~~VK  163 (953)
T KOG0587|consen   88 KDPGNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLAHLHNNK---VIHRDIKGQNVLLTENAEVK  163 (953)
T ss_pred             ecCCCCCeEEEEeeccCCccHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHhhcc---eeeecccCceEEEeccCcEE
Confidence               23589999999999999999997654 788999999999999999999999998   99999999999999999999


Q ss_pred             EeccCCCcccCCC--CccCcccccccCChhhhhcC-----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc
Q 011995          325 LSGYGCAGHIPET--DISNSSVAAANLSVETLERG-----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       325 l~DFGla~~~~~~--~~~~~~~t~~y~aPE~~~~~-----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~  397 (473)
                      |+|||++..+..+  ...+..||+.|||||++...     .|+.++|+||||++..||.-|.+|+.+.++......+.  
T Consensus       164 LvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~Ip--  241 (953)
T KOG0587|consen  164 LVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIP--  241 (953)
T ss_pred             EeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCC--
Confidence            9999999877554  44567899999999998543     37789999999999999999999999887765443221  


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                   -+|...-.-+...+.++-+||..||.+|..+||++.++|+
T Consensus       242 -------------RNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  242 -------------RNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             -------------CCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence                         2333333347889999999999999999999999999875

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=312.90  Aligned_cols=261  Identities=25%  Similarity=0.415  Sum_probs=208.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeee--eEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTS--KKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ++..+.+.||+|.||.||+|.+.......  ..+.++++.+.  ......+.+..|+++|+.+ .|+||+.++|+|... 
T Consensus       296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~-  374 (609)
T KOG0200|consen  296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQD-  374 (609)
T ss_pred             hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccC-
Confidence            34455579999999999999875433321  23445555544  3445678899999999999 699999999999874 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCC-----CC--------CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRS-----DG--------PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~-----~~--------~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                       +.+++|+||+..|+|.++|+...     ..        ..++....+.++.||+.|++||++..   +|||||...|||
T Consensus       375 -~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~---~vHRDLAaRNVL  450 (609)
T KOG0200|consen  375 -GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP---CVHRDLAARNVL  450 (609)
T ss_pred             -CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC---ccchhhhhhhEE
Confidence             78999999999999999997654     00        23888999999999999999999998   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCccCc---c--cccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDISNS---S--VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~~~~---~--~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      +..+..+||+|||+++..........   .  ....|||||.+....|+.++|||||||+|||++| |..||.+......
T Consensus       451 i~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~  530 (609)
T KOG0200|consen  451 ITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEE  530 (609)
T ss_pred             ecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHH
Confidence            99999999999999997655443321   2  2456999999999999999999999999999998 8999987332221


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .  .+    ++.++.++          ..|..+..++.+++..||+.+|++||++.++.+.|+.+.
T Consensus       531 l--~~----~l~~G~r~----------~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  531 L--LE----FLKEGNRM----------EQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             H--HH----HHhcCCCC----------CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence            1  11    22333222          237778899999999999999999999999999999854

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=280.13  Aligned_cols=270  Identities=23%  Similarity=0.349  Sum_probs=221.3

Q ss_pred             HHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEec--CCCChhhHhHHHHHHHHHhCCCCCcccceeee
Q 011995          168 DEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRL--NPSSQGVKEFINDVNTLASLQHPNLCKLLGFH  245 (473)
Q Consensus       168 ~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~  245 (473)
                      .||.....+++..-++-+|+||.||+|.|++...-.+..++-+|..  +.++-....++.|..++..+.|||+..+.+++
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            4555556678888899999999999998876543222222222222  23444556788999999999999999999999


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhh-----cCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIY-----GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~-----~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      .++. +..+.+|.++.-|+|..+|.     .......++-.+...++.|++.|++|||.++   |||.||...|++||+.
T Consensus       357 ie~~-~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~---ViHkDiAaRNCvIdd~  432 (563)
T KOG1024|consen  357 IEDY-ATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG---VIHKDIAARNCVIDDQ  432 (563)
T ss_pred             eecc-CcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC---cccchhhhhcceehhh
Confidence            8765 78889999999999999997     2233456777888999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCcc----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          321 FSAKLSGYGCAGHIPETDIS----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~~----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      ..+||+|-.+++.+...++.    +......||++|.+....|+.++|||||||++|||+| |+.||...++.+...   
T Consensus       433 LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~---  509 (563)
T KOG1024|consen  433 LQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEH---  509 (563)
T ss_pred             eeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHH---
Confidence            99999999999887655543    2234578999999999999999999999999999987 999999888877665   


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                          ++.++.++..          |.+++++++.++..||..+|++||++++++.-|.++...
T Consensus       510 ----ylkdGyRlaQ----------P~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~q  558 (563)
T KOG1024|consen  510 ----YLKDGYRLAQ----------PFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQ  558 (563)
T ss_pred             ----HHhccceecC----------CCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHH
Confidence                3445555443          778999999999999999999999999999999987643

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=7e-35  Score=282.54  Aligned_cols=262  Identities=18%  Similarity=0.243  Sum_probs=195.5

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |+..+.||+|+||.||+|+..++   ...+++++..... .......+..|+.+++.++|+||+++++++...  +..++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--~~~~~   75 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKT---GEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTE--RKLYL   75 (282)
T ss_pred             CeeehcccccCcceEEEeeecCC---CcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcC--CceEE
Confidence            45568899999999999986543   3445555554432 233346788999999999999999999998765  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+. ++|.+++....  ..+++..+..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++....
T Consensus        76 v~e~~~-~~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~  149 (282)
T cd07829          76 VFEYCD-MDLKKYLDKRP--GPLSPNLIKSIMYQLLRGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFG  149 (282)
T ss_pred             EecCcC-cCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChheEEEcCCCCEEEecCCcccccC
Confidence            999997 59999996432  46899999999999999999999999   9999999999999999999999999987664


Q ss_pred             CCC--ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hccc-------cccc-
Q 011995          336 ETD--ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSRP-------FLAD-  403 (473)
Q Consensus       336 ~~~--~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~~-------~~~~-  403 (473)
                      ...  ......+..|+|||.+.+. .++.++|||||||++|||++|.+||...........+. ....       .... 
T Consensus       150 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (282)
T cd07829         150 IPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKL  229 (282)
T ss_pred             CCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccc
Confidence            332  2333456789999998776 78999999999999999999999997765433222111 0000       0000 


Q ss_pred             ---ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 ---DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ---~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         ...............+ ...+..+.+++.+||..||++||++.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         230 PDYKPTFPKFPPKDLEKVL-PRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccccccccccCccchHHhc-ccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence               0000000000000111 123678999999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.3e-36  Score=316.55  Aligned_cols=254  Identities=19%  Similarity=0.287  Sum_probs=195.3

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC--
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD--  248 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~--  248 (473)
                      .+-.++|+....||+||||.||+++   +.-.+..+|+|.+.++.+......+.+|+.+|++|+|||||+++..+.+.  
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVR---NKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~  551 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVR---NKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTA  551 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEe---ecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCC
Confidence            4556678888999999999999998   66677888888888887677778899999999999999999987543211  


Q ss_pred             ---------------------------------------------------------------------------C----
Q 011995          249 ---------------------------------------------------------------------------G----  249 (473)
Q Consensus       249 ---------------------------------------------------------------------------~----  249 (473)
                                                                                                 +    
T Consensus       552 ~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S  631 (1351)
T KOG1035|consen  552 ELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLS  631 (1351)
T ss_pred             ccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccc
Confidence                                                                                       0    


Q ss_pred             ----------------------------C--------CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 011995          250 ----------------------------S--------DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG  293 (473)
Q Consensus       250 ----------------------------~--------~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~  293 (473)
                                                  +        ..+||-||||+...|.+++..+....  ......+++.+|+.|
T Consensus       632 ~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~--~~d~~wrLFreIlEG  709 (1351)
T KOG1035|consen  632 NTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS--QRDEAWRLFREILEG  709 (1351)
T ss_pred             cccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch--hhHHHHHHHHHHHHH
Confidence                                        0        13788899999988888885543111  357778999999999


Q ss_pred             HHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC--------------------CCCccCcccccccCChhh
Q 011995          294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP--------------------ETDISNSSVAAANLSVET  353 (473)
Q Consensus       294 L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~--------------------~~~~~~~~~t~~y~aPE~  353 (473)
                      |.|+|++|   ||||||||.||+|+++..|||+|||+|+...                    ..+.+..+||.-|+|||.
T Consensus       710 LaYIH~~g---iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEl  786 (1351)
T KOG1035|consen  710 LAYIHDQG---IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPEL  786 (1351)
T ss_pred             HHHHHhCc---eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHH
Confidence            99999999   9999999999999999999999999998721                    012345678999999999


Q ss_pred             hhcCC---CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccC--CCCCHHHHHHHH
Q 011995          354 LERGL---LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK--GRFPLKAARTVA  428 (473)
Q Consensus       354 ~~~~~---~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~l~  428 (473)
                      +.+..   |+.|+|||||||||+||+.   ||...  ++....+.-             +.+..+.  ..|.......-+
T Consensus       787 l~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~Ts--MERa~iL~~-------------LR~g~iP~~~~f~~~~~~~e~  848 (1351)
T KOG1035|consen  787 LSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTS--MERASILTN-------------LRKGSIPEPADFFDPEHPEEA  848 (1351)
T ss_pred             hcccccccccchhhhHHHHHHHHHHhc---cCCch--HHHHHHHHh-------------cccCCCCCCcccccccchHHH
Confidence            97655   9999999999999999986   45432  222222211             1111111  123333445567


Q ss_pred             HHHHHhcccCCCCCCCHHHHHH
Q 011995          429 DIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       429 ~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .+|.++++.||++||||.|+|+
T Consensus       849 slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  849 SLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HHHHHHhcCCCccCCCHHHHhh
Confidence            8999999999999999999986

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.8e-35  Score=292.85  Aligned_cols=266  Identities=15%  Similarity=0.204  Sum_probs=195.6

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|...+.||+|+||.||+|....+   +..+++|+..... .......+.+|+++|+.++|+||+++++++..+..
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRT---GAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLS   88 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCC---CcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcc
Confidence            3567899999999999999999985433   3445555443221 23334568899999999999999999998865421


Q ss_pred             ----CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          251 ----DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       251 ----~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                          ...++||||+ +++|.+++..    ..+++..+..++.|++.||+|||+.+   |+||||||+||+++.++.++|+
T Consensus        89 ~~~~~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~al~~LH~~g---i~H~dlkp~Nill~~~~~~kl~  160 (343)
T cd07880          89 LDRFHDFYLVMPFM-GTDLGKLMKH----EKLSEDRIQFLVYQMLKGLKYIHAAG---IIHRDLKPGNLAVNEDCELKIL  160 (343)
T ss_pred             ccccceEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEe
Confidence                2468999998 7799888742    35899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh-hhccc-----
Q 011995          327 GYGCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRP-----  399 (473)
Q Consensus       327 DFGla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~-~~~~~-----  399 (473)
                      |||++..... ......+++.|++||.+.+ ..++.++|||||||++|+|++|..||...........+ .....     
T Consensus       161 dfg~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  239 (343)
T cd07880         161 DFGLARQTDS-EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEF  239 (343)
T ss_pred             eccccccccc-CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Confidence            9999876533 2234466889999999876 35889999999999999999999999876543221111 10000     


Q ss_pred             ---ccccc-cc----cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          400 ---FLADD-CR----LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       400 ---~~~~~-~~----~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         ..... ..    +.......+ ..+...++..+.+++.+||+.||.+|||+.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         240 VQKLQSEDAKNYVKKLPRFRKKDF-RSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             HHhhcchhHHHHHHhccccCcchH-HHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence               00000 00    000000000 0111245567899999999999999999999983

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.7e-37  Score=275.22  Aligned_cols=267  Identities=18%  Similarity=0.239  Sum_probs=204.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh-hhHhHHHHHHHHHhCCCCCcccceeeeecC------
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARD------  248 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~------  248 (473)
                      .|+...+||+|.||.||+|+.   ..++++++++++....... --...++|+++|..+.|+|++.++++|...      
T Consensus        18 ~yek~~kigqGtfgeVFkAr~---~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r   94 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARS---KNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR   94 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhh---cCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence            455558899999999999984   4455666665554433333 335678999999999999999999988542      


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ....+||||++|++ +|..+|..  ....++..++.+++.++..||.|+|...   |+|||+|+.|+||+.+|.+||+||
T Consensus        95 ~r~t~ylVf~~ceh-DLaGlLsn--~~vr~sls~Ikk~Mk~Lm~GL~~iHr~k---ilHRDmKaaNvLIt~dgilklADF  168 (376)
T KOG0669|consen   95 DRATFYLVFDFCEH-DLAGLLSN--RKVRFSLSEIKKVMKGLMNGLYYIHRNK---ILHRDMKAANVLITKDGILKLADF  168 (376)
T ss_pred             ccceeeeeHHHhhh-hHHHHhcC--ccccccHHHHHHHHHHHHHHHHHHHHhh---HHhhcccHhhEEEcCCceEEeecc
Confidence            12458999999977 89988843  2367899999999999999999999998   999999999999999999999999


Q ss_pred             CCCcccC------CCCccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          329 GCAGHIP------ETDISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       329 Gla~~~~------~~~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      |+++.+.      ...+++.++|.+|.+||.+.+.. |++..|||+-|||+.||+||.+.+.+........++......+
T Consensus       169 Glar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~  248 (376)
T KOG0669|consen  169 GLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSI  248 (376)
T ss_pred             ccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccC
Confidence            9997653      23466778899999999998765 9999999999999999999999999888777776664221111


Q ss_pred             c--------ccccccccc-ccccCCCC--------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 A--------DDCRLSLIM-DPQLKGRF--------PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~--------~~~~~~~~~-~~~l~~~~--------~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .        .-.....+. .|-..+.+        +..-..+..+++..++..||.+|+++.+++..
T Consensus       249 tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  249 TKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             CcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence            1        111111111 11111111        11223478899999999999999999998864

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-35  Score=273.96  Aligned_cols=265  Identities=16%  Similarity=0.291  Sum_probs=206.1

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCccccee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLG  243 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g  243 (473)
                      -.++|+-..|+     ..||+|+|+.|-.++   +..+++.++||++... ....+.++.+|++++.++ .|+||+.|++
T Consensus        73 g~F~d~YkLt~-----e~LGeGAyasVqtcv---~i~t~~EYAVKiidKq-~gHsR~RvfREVe~f~~Cqgh~nilqLie  143 (463)
T KOG0607|consen   73 GKFEDMYKLTS-----ELLGEGAYASVQTCV---SIQTGKEYAVKIIDKQ-PGHSRSRVFREVETFYQCQGHKNILQLIE  143 (463)
T ss_pred             chHHHHHHhHH-----HHhcCccceeeeeee---eeccchhhhhhhhhcC-CchHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence            45677777765     789999999999997   6667788888876644 456678899999999999 6999999999


Q ss_pred             eeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---
Q 011995          244 FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---  320 (473)
Q Consensus       244 ~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---  320 (473)
                      ||+++  ..+|||||-|.||+|..+|+++   ..|++.++.+++.+|+.||.|||.+|   |.||||||+|||-..-   
T Consensus       144 fFEdd--~~FYLVfEKm~GGplLshI~~~---~~F~E~EAs~vvkdia~aLdFlH~kg---IAHRDlKPENiLC~~pn~v  215 (463)
T KOG0607|consen  144 FFEDD--TRFYLVFEKMRGGPLLSHIQKR---KHFNEREASRVVKDIASALDFLHTKG---IAHRDLKPENILCESPNKV  215 (463)
T ss_pred             Hhccc--ceEEEEEecccCchHHHHHHHh---hhccHHHHHHHHHHHHHHHHHHhhcC---cccccCCccceeecCCCCc
Confidence            99887  8899999999999999999654   35899999999999999999999999   9999999999998644   


Q ss_pred             CcEEEeccCCCcccCC---------CCccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCC
Q 011995          321 FSAKLSGYGCAGHIPE---------TDISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRH  386 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~---------~~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~  386 (473)
                      --+|||||.+..-+..         .+..+.+|+..|||||+..     ...|+.+.|.||||||||-|++|.+||.+.-
T Consensus       216 sPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~C  295 (463)
T KOG0607|consen  216 SPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHC  295 (463)
T ss_pred             CceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCcc
Confidence            3489999988754421         1234567788999999872     2358999999999999999999999997754


Q ss_pred             hHHHHhHhhhccccccccc---cccccccccc--CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          387 PKEERNLVKWSRPFLADDC---RLSLIMDPQL--KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..+    .-|.+......+   .+..+.+...  ++.-...++.+..+++..+|..|+.+|.++.+++.
T Consensus       296 g~d----CGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  296 GAD----CGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CCc----CCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            322    112221111111   1111111111  11123468899999999999999999999999987

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.9e-35  Score=293.44  Aligned_cols=267  Identities=15%  Similarity=0.198  Sum_probs=196.4

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|...+.||+|+||.||+|....+   ...+++++.... ........+.+|+.+++.++|+||+++++++...+.
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKT---GRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASS   88 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCC---CcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccc
Confidence            4567899999999999999999986543   334445543322 123344667889999999999999999987765421


Q ss_pred             ----CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          251 ----DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       251 ----~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                          ...++|+||+ +++|.+++..    ..+++..+..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+
T Consensus        89 ~~~~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nill~~~~~~kL~  160 (343)
T cd07851          89 LEDFQDVYLVTHLM-GADLNNIVKC----QKLSDDHIQFLVYQILRGLKYIHSAG---IIHRDLKPSNIAVNEDCELKIL  160 (343)
T ss_pred             ccccccEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEc
Confidence                2489999998 6799998843    46999999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc-
Q 011995          327 GYGCAGHIPETDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD-  404 (473)
Q Consensus       327 DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~-  404 (473)
                      |||++...... .....++..|+|||.+.+. .++.++|||||||++|||++|+.||...........+.-......+. 
T Consensus       161 dfg~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~  239 (343)
T cd07851         161 DFGLARHTDDE-MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEEL  239 (343)
T ss_pred             ccccccccccc-ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHH
Confidence            99998765432 3344667889999998653 57899999999999999999999998765443322111000000000 


Q ss_pred             ------cccccc---cccccCCCC---CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 ------CRLSLI---MDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ------~~~~~~---~~~~l~~~~---~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                            ......   ........+   ....+..+.+++.+||..||.+|||+.+|++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         240 LQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence                  000000   000000000   1124678999999999999999999999986

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=9.3e-35  Score=289.39  Aligned_cols=267  Identities=16%  Similarity=0.188  Sum_probs=191.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhC-CCCCcccceeeeecC--CCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD--GSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~--~~~  251 (473)
                      +|...+.||+|+||.||++...... ..+.++++...... .....+.+.+|++++.++ +|+||+++++++...  ...
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~-~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETS-EEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCC-cCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            4777899999999999999965431 13445555444321 223356788999999999 599999999875432  224


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+++++||+. ++|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivH~dlkp~Nili~~~~~~kl~Dfg~a  152 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRS---GQPLTDAHFQSFIYQILCGLKYIHSAN---VLHRDLKPGNLLVNADCELKICDFGLA  152 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHeEEcCCCCEEeCcCCCc
Confidence            6788889885 689988843   346899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC------ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          332 GHIPETD------ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       332 ~~~~~~~------~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      .......      .....++..|+|||.+.+ ..++.++|||||||++|+|++|.+||...........+........ .
T Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~-~  231 (332)
T cd07857         153 RGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPD-E  231 (332)
T ss_pred             eecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCC-H
Confidence            7653221      123467889999998866 4589999999999999999999999987654332221111000000 0


Q ss_pred             cccccccc-----------cccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 CRLSLIMD-----------PQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~-----------~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .....+..           ....   .......+..+.+|+.+||+.||.+|||+.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         232 ETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             HHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            00000000           0000   00111235789999999999999999999998753

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-34  Score=274.83  Aligned_cols=236  Identities=22%  Similarity=0.272  Sum_probs=189.4

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      ||.|+||.||++...+.   ...+++++.....  .......+..|+++++.++|+||+++++.+..+  ...++||||+
T Consensus         1 lg~G~~~~v~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKDT---GKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTE--EKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECCC---CcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecC--CeeEEEEecC
Confidence            68999999999986542   3445555544332  223456889999999999999999999988765  7899999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC--C
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET--D  338 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~--~  338 (473)
                      ++++|.+++...   ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++......  .
T Consensus        76 ~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lh~~~---~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~  149 (250)
T cd05123          76 PGGELFSHLSKE---GRFSEERARFYAAEIVLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR  149 (250)
T ss_pred             CCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcceEEEcCCCcEEEeecCcceecccCCCc
Confidence            999999999543   36899999999999999999999998   999999999999999999999999998776443  2


Q ss_pred             ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCC
Q 011995          339 ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR  418 (473)
Q Consensus       339 ~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (473)
                      .....++..|++||...+..++.++|+||||+++|+|++|..||...........+...                  ...
T Consensus       150 ~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~------------------~~~  211 (250)
T cd05123         150 TNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKD------------------PLR  211 (250)
T ss_pred             ccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcC------------------CCC
Confidence            33446678999999998888899999999999999999999999765542222111110                  011


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          419 FPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       419 ~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                      ++...+..+.+++.+||..||++||++.+
T Consensus       212 ~~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         212 FPEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             CCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence            23344678899999999999999999943

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-35  Score=280.14  Aligned_cols=259  Identities=19%  Similarity=0.306  Sum_probs=196.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC--CCCCcccceeeeecCC--
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL--QHPNLCKLLGFHARDG--  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l--~HpnIv~l~g~~~~~~--  249 (473)
                      .......+.||+|.||.||+|.|++..++     ||+.    +....+.+.+|.+|...+  +|+||+.+++.-..+.  
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wrGe~VA-----VKiF----~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs  280 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWRGEDVA-----VKIF----SSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGS  280 (513)
T ss_pred             hheeEEEEEecCccccceeeccccCCceE-----EEEe----cccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCc
Confidence            34556668999999999999999987643     3332    234456788888887764  9999999987543322  


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhh-----hcCCCceeecCCCCCceeeCCCCcEE
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH-----EEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH-----~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      -.++|||.+|.++|||+|+|..    .+++-...++++..+|.||+|||     .+|+|.|.|||||..|||+..++.+-
T Consensus       281 ~TQLwLvTdYHe~GSL~DyL~r----~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~  356 (513)
T KOG2052|consen  281 WTQLWLVTDYHEHGSLYDYLNR----NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCC  356 (513)
T ss_pred             eEEEEEeeecccCCcHHHHHhh----ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEE
Confidence            2479999999999999999943    46999999999999999999999     46788999999999999999999999


Q ss_pred             EeccCCCcccCCC------CccCcccccccCChhhhhcCC----C--CCcCCchHHHHHHHHHHcC----------CCCC
Q 011995          325 LSGYGCAGHIPET------DISNSSVAAANLSVETLERGL----L--TPKSNVWSFGIVLLELLTG----------RKNL  382 (473)
Q Consensus       325 l~DFGla~~~~~~------~~~~~~~t~~y~aPE~~~~~~----~--s~~sDvwSlGvvl~elltG----------~~p~  382 (473)
                      |+|+|||....+.      ..+..+||-.|||||++....    +  -..+||||||+|+||+..+          ++||
T Consensus       357 IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Py  436 (513)
T KOG2052|consen  357 IADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPY  436 (513)
T ss_pred             EeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCc
Confidence            9999999765433      234568999999999985532    1  2368999999999999853          4566


Q ss_pred             CCCChHH-----HHhHhhhcccccccccccccccccccCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          383 DSRHPKE-----ERNLVKWSRPFLADDCRLSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       383 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .+..+.+     ++..+.            ..-..|.+...+ ...+...+.++++.||..+|..|.|+-.|-+.|.++.
T Consensus       437 yd~Vp~DPs~eeMrkVVC------------v~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~  504 (513)
T KOG2052|consen  437 YDVVPSDPSFEEMRKVVC------------VQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLS  504 (513)
T ss_pred             ccCCCCCCCHHHHhccee------------ecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHh
Confidence            5432211     111110            011122222222 3467788999999999999999999999999999887


Q ss_pred             c
Q 011995          457 S  457 (473)
Q Consensus       457 ~  457 (473)
                      +
T Consensus       505 ~  505 (513)
T KOG2052|consen  505 N  505 (513)
T ss_pred             c
Confidence            4

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=2.3e-34  Score=310.60  Aligned_cols=148  Identities=21%  Similarity=0.252  Sum_probs=126.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|.+.+.||+|+||.||+|....   ..+.+++|+.+...  .......+.+|+.++..++|+||+++++++...  +
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~--~   77 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKN---NSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSA--N   77 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECC---CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEEC--C
Confidence            3678899999999999999998653   33455666654322  233456788999999999999999999888765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+||||||+.+++|.+++..   ...+++..++.|+.||+.||.|||..+   ||||||||+||||+.++.+||+|||++
T Consensus        78 ~~~lVmEy~~g~~L~~li~~---~~~l~~~~~~~i~~qil~aL~yLH~~g---IiHrDLKP~NILl~~~g~vkL~DFGls  151 (669)
T cd05610          78 NVYLVMEYLIGGDVKSLLHI---YGYFDEEMAVKYISEVALALDYLHRHG---IIHRDLKPDNMLISNEGHIKLTDFGLS  151 (669)
T ss_pred             EEEEEEeCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCccHHHEEEcCCCCEEEEeCCCC
Confidence            89999999999999999854   235889999999999999999999998   999999999999999999999999987


Q ss_pred             c
Q 011995          332 G  332 (473)
Q Consensus       332 ~  332 (473)
                      +
T Consensus       152 ~  152 (669)
T cd05610         152 K  152 (669)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=290.63  Aligned_cols=245  Identities=17%  Similarity=0.252  Sum_probs=198.4

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      .+.||+|.||+||-|+.+.   +++.+++|++... .......++++|+.||..++||.||.|.-.|++.  +.+++|||
T Consensus       569 devLGSGQFG~VYgg~hRk---tGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~--ervFVVME  643 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRK---TGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETP--ERVFVVME  643 (888)
T ss_pred             HhhccCCcceeeecceecc---cCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCC--ceEEEEeh
Confidence            4789999999999998544   5566667765433 2344457899999999999999999998888776  88999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---CcEEEeccCCCcccC
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---FSAKLSGYGCAGHIP  335 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~~vkl~DFGla~~~~  335 (473)
                      -+ +|++.++|... +.++|++...+.++.||+.||.|||.++   |||+||||+|||+...   -.+||||||+|+++.
T Consensus       644 Kl-~GDMLEMILSs-EkgRL~er~TkFlvtQIL~ALr~LH~kn---IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIg  718 (888)
T KOG4236|consen  644 KL-HGDMLEMILSS-EKGRLPERITKFLVTQILVALRYLHFKN---IVHCDLKPENVLLASASPFPQVKLCDFGFARIIG  718 (888)
T ss_pred             hh-cchHHHHHHHh-hcccchHHHHHHHHHHHHHHHHHhhhcc---eeeccCCchheeeccCCCCCceeeccccceeecc
Confidence            99 56777777554 4567999999999999999999999999   9999999999999643   579999999999998


Q ss_pred             CCCcc-CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          336 ETDIS-NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       336 ~~~~~-~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      +.... ..+||+.|+|||+++...|...-||||.|||+|.-++|..||....+..  +.|+-+.           ++.|.
T Consensus       719 EksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIn--dQIQNAa-----------FMyPp  785 (888)
T KOG4236|consen  719 EKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDIN--DQIQNAA-----------FMYPP  785 (888)
T ss_pred             hhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchh--HHhhccc-----------cccCC
Confidence            77654 5589999999999999999999999999999999999999997644322  2222111           11111


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      -   -..+++..+.+||..+|+..-.+|-|..+.+.
T Consensus       786 ~---PW~eis~~AidlIn~LLqVkm~kRysvdk~ls  818 (888)
T KOG4236|consen  786 N---PWSEISPEAIDLINNLLQVKMRKRYSVDKSLS  818 (888)
T ss_pred             C---chhhcCHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence            0   13577888999999999999999999887653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-35  Score=295.94  Aligned_cols=241  Identities=18%  Similarity=0.241  Sum_probs=193.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++.|.....+|.|+|+.|-++..   ..+...++++++...     ..+-.+|+.++... +||||+++++.+.+.  .+
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~---~~t~~~~~vkii~~~-----~~~~~~e~~~~~~~~~h~niv~~~~v~~~~--~~  390 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCES---SPTDQEPAVKIISKR-----ADDNQDEIPISLLVRDHPNIVKSHDVYEDG--KE  390 (612)
T ss_pred             chhhccccccCCCCccceeeeec---cccccchhheecccc-----ccccccccchhhhhcCCCcceeecceecCC--ce
Confidence            56788888899999999999984   444455556655432     23344677666666 799999999998765  88


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee-CCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI-DKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl-~~~~~vkl~DFGla  331 (473)
                      .|+|||++.++-|.+.+....   .+. ..+..|+.+|+.++.|||++|   ||||||||+|||+ +..++++|+|||.+
T Consensus       391 ~~~v~e~l~g~ell~ri~~~~---~~~-~e~~~w~~~lv~Av~~LH~~g---vvhRDLkp~NIL~~~~~g~lrltyFG~a  463 (612)
T KOG0603|consen  391 IYLVMELLDGGELLRRIRSKP---EFC-SEASQWAAELVSAVDYLHEQG---VVHRDLKPGNILLDGSAGHLRLTYFGFW  463 (612)
T ss_pred             eeeeehhccccHHHHHHHhcc---hhH-HHHHHHHHHHHHHHHHHHhcC---eeecCCChhheeecCCCCcEEEEEechh
Confidence            999999999999888885433   222 778889999999999999999   9999999999999 68899999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ...... ..+.+.|..|.|||++....|++++||||||++||+|++|+.||.......+  +.                 
T Consensus       464 ~~~~~~-~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~e--i~-----------------  523 (612)
T KOG0603|consen  464 SELERS-CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIE--IH-----------------  523 (612)
T ss_pred             hhCchh-hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHH--HH-----------------
Confidence            877554 4556788999999999988999999999999999999999999976543311  11                 


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..-..+.+...++..+++|+.+||+.||.+|++|.+++..
T Consensus       524 ~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  524 TRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             HhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence            0111223347788999999999999999999999999764

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=311.12  Aligned_cols=254  Identities=16%  Similarity=0.157  Sum_probs=201.3

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHA  246 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~  246 (473)
                      ++....++|.+.++||+|+||.|..+++.   .+.+.+|.|+...-  .......-|..|-++|...+.+.|+.++-.|.
T Consensus        69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k---~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQ  145 (1317)
T KOG0612|consen   69 ELRLKAEDFEILKVIGRGAFGEVALVRHK---STEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQ  145 (1317)
T ss_pred             HHhCCHHhhHHHHHhcccccceeEEEEee---ccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhc
Confidence            34444688999999999999999999854   45566666554321  12233456889999999999999999987777


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                      ++  .++|||||||+||+|..++..   ...+++..+..++.+|+-||.-||+.|   +|||||||+|||||..|++||+
T Consensus       146 D~--~~LYlVMdY~pGGDlltLlSk---~~~~pE~~ArFY~aEiVlAldslH~mg---yVHRDiKPDNvLld~~GHikLA  217 (1317)
T KOG0612|consen  146 DE--RYLYLVMDYMPGGDLLTLLSK---FDRLPEDWARFYTAEIVLALDSLHSMG---YVHRDIKPDNVLLDKSGHIKLA  217 (1317)
T ss_pred             Cc--cceEEEEecccCchHHHHHhh---cCCChHHHHHHHHHHHHHHHHHHHhcc---ceeccCCcceeEecccCcEeec
Confidence            66  899999999999999999943   237999999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCC---ccCcccccccCChhhhh----c-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          327 GYGCAGHIPETD---ISNSSVAAANLSVETLE----R-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       327 DFGla~~~~~~~---~~~~~~t~~y~aPE~~~----~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      |||.+-.+..+.   ....+|||.|++||+++    + +.|+..+|+||+||++|||+.|..||......+....|.   
T Consensus       218 DFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm---  294 (1317)
T KOG0612|consen  218 DFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIM---  294 (1317)
T ss_pred             cchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHh---
Confidence            999776665332   24568999999999994    2 569999999999999999999999997665444433332   


Q ss_pred             cccccccccccccccccCCCCC--HHHHHHHHHHHHHhcccCCCCCCC---HHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFP--LKAARTVADIALRCLQKEPSERPT---MRSIFE  450 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l~~li~~cl~~dP~~RPt---~~eil~  450 (473)
                                   +-.-.-.||  ..++.++.+||.+.+. +|+.|..   ++++-.
T Consensus       295 -------------~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~  337 (1317)
T KOG0612|consen  295 -------------NHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKN  337 (1317)
T ss_pred             -------------chhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHh
Confidence                         111111233  4588999999998874 6888887   777654

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=282.40  Aligned_cols=256  Identities=18%  Similarity=0.253  Sum_probs=198.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC------ChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS------SQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      ++|-..++||+|||+.||+|.   +....+.+++++-.++..      ....+...+|..|.+.|.||.||++|+|+.-+
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAF---Dl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslD  539 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAF---DLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLD  539 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhc---ccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeec
Confidence            446667899999999999998   555566677777766542      22345678899999999999999999999876


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKL  325 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl  325 (473)
                      . +.+|-|+|||+|.+|+-+|..   ...+++.++..|+.||+.||.||....+ +|||-||||.||||-.   -|.+||
T Consensus       540 t-dsFCTVLEYceGNDLDFYLKQ---hklmSEKEARSIiMQiVnAL~YLNEikp-PIIHYDLKPgNILLv~GtacGeIKI  614 (775)
T KOG1151|consen  540 T-DSFCTVLEYCEGNDLDFYLKQ---HKLMSEKEARSIIMQIVNALKYLNEIKP-PIIHYDLKPGNILLVNGTACGEIKI  614 (775)
T ss_pred             c-ccceeeeeecCCCchhHHHHh---hhhhhHHHHHHHHHHHHHHHHHHhccCC-CeeeeccCCccEEEecCcccceeEe
Confidence            4 789999999999999999843   4468999999999999999999999875 5999999999999943   488999


Q ss_pred             eccCCCcccCCCCc---------cCcccccccCChhhhhcC----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          326 SGYGCAGHIPETDI---------SNSSVAAANLSVETLERG----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       326 ~DFGla~~~~~~~~---------~~~~~t~~y~aPE~~~~~----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      .||||++++....+         +...||.||++||.+.-+    ..+.++||||+|||+|..+.|+.||......  .+
T Consensus       615 TDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQ--Qd  692 (775)
T KOG1151|consen  615 TDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQ--QD  692 (775)
T ss_pred             eecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhH--HH
Confidence            99999998865433         234678999999988433    4788999999999999999999999754322  22


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +..........          .+.-.--..++.++.+||++||++.-++|....++..
T Consensus       693 ILqeNTIlkAt----------EVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  693 ILQENTILKAT----------EVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             HHhhhchhcce----------eccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence            22221110000          0000112356788999999999999999998877654

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=276.71  Aligned_cols=241  Identities=19%  Similarity=0.240  Sum_probs=195.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      .+|....+||+|+||.|.+|.-++   +...+++++.+...  ....++--+.|-.+|... +-|.++.++.++.+-  +
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkg---tdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTm--D  423 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKG---TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTM--D  423 (683)
T ss_pred             cccceEEEeccCccceeeeecccC---cchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhh--h
Confidence            467777999999999999996433   33445555443321  223334445677777766 578999999988876  8


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+||||+.||+|--++++   -+.+.+..+..+|.+|+-||-|||+++   ||+||||.+|||||.+|.+||+|||+.
T Consensus       424 RLyFVMEyvnGGDLMyhiQQ---~GkFKEp~AvFYAaEiaigLFFLh~kg---IiYRDLKLDNvmLd~eGHiKi~DFGmc  497 (683)
T KOG0696|consen  424 RLYFVMEYVNGGDLMYHIQQ---VGKFKEPVAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMC  497 (683)
T ss_pred             heeeEEEEecCchhhhHHHH---hcccCCchhhhhhHHHHHHhhhhhcCC---eeeeeccccceEeccCCceEeeecccc
Confidence            89999999999999888854   345788889999999999999999999   999999999999999999999999998


Q ss_pred             ccc--CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHI--PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~--~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +.-  ......+.+||+.|+|||++....|+..+|+|||||+||||+.|++||++.++.+....|...            
T Consensus       498 KEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~eh------------  565 (683)
T KOG0696|consen  498 KENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEH------------  565 (683)
T ss_pred             cccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHc------------
Confidence            643  333445679999999999999999999999999999999999999999998877765544311            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT  444 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt  444 (473)
                          .  -.||...+.++.+++...|.+.|.+|..
T Consensus       566 ----n--vsyPKslSkEAv~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  566 ----N--VSYPKSLSKEAVAICKGLLTKHPGKRLG  594 (683)
T ss_pred             ----c--CcCcccccHHHHHHHHHHhhcCCccccC
Confidence                1  1357888899999999999999999954

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=274.22  Aligned_cols=267  Identities=14%  Similarity=0.173  Sum_probs=197.6

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC--CC----Ccccceeee
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ--HP----NLCKLLGFH  245 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~--Hp----nIv~l~g~~  245 (473)
                      ..+++|.+...+|+|+||.|-.+..+..   ...+++|++  +.-....+..+-|+++|.++.  .|    -+|.+.+|+
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~---~~~vAlKIi--k~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wF  160 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRET---KEHVALKII--KNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWF  160 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCC---CceehHHHH--HHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhh
Confidence            3478999999999999999999985443   333334433  333344566678999999993  22    356777777


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC------
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK------  319 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~------  319 (473)
                      ...  ++.|||+|.+ |-|+.++|..+ ...+++...+..++.|++++++|||+.+   ++|.||||+|||+..      
T Consensus       161 dyr--ghiCivfell-G~S~~dFlk~N-~y~~fpi~~ir~m~~QL~~sv~fLh~~k---l~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  161 DYR--GHICIVFELL-GLSTFDFLKEN-NYIPFPIDHIRHMGYQLLESVAFLHDLK---LTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             hcc--CceEEEEecc-ChhHHHHhccC-CccccchHHHHHHHHHHHHHHHHHHhcc---eeecCCChheEEEeccceEEE
Confidence            655  8899999998 66999999654 4567999999999999999999999999   999999999999831      


Q ss_pred             --------------CCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCC
Q 011995          320 --------------DFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR  385 (473)
Q Consensus       320 --------------~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~  385 (473)
                                    +..++|+|||.|+.-.+.. +..+.|..|.|||++.+-.++..+||||+||||+||+||...|...
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h-s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtH  312 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH-STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTH  312 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCc-ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccC
Confidence                          2348999999998664433 5667899999999999999999999999999999999999999887


Q ss_pred             ChHHHHhHhhhccc--------------ccccc----------cccccccccccC----CCCCHHHHHHHHHHHHHhccc
Q 011995          386 HPKEERNLVKWSRP--------------FLADD----------CRLSLIMDPQLK----GRFPLKAARTVADIALRCLQK  437 (473)
Q Consensus       386 ~~~~~~~~~~~~~~--------------~~~~~----------~~~~~~~~~~l~----~~~~~~~~~~l~~li~~cl~~  437 (473)
                      +..+.....+....              +...+          .......++...    -........++.+|+.+||..
T Consensus       313 en~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~f  392 (415)
T KOG0671|consen  313 ENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEF  392 (415)
T ss_pred             CcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHcc
Confidence            76553332221100              00000          000000000000    011234566799999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 011995          438 EPSERPTMRSIFEE  451 (473)
Q Consensus       438 dP~~RPt~~eil~~  451 (473)
                      ||.+|+|+.|+|+.
T Consensus       393 DP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  393 DPARRITLREALSH  406 (415)
T ss_pred             CccccccHHHHhcC
Confidence            99999999999863

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=6.4e-34  Score=269.63  Aligned_cols=220  Identities=20%  Similarity=0.206  Sum_probs=172.8

Q ss_pred             cCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccCCCh
Q 011995          186 GLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL  265 (473)
Q Consensus       186 G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL  265 (473)
                      |.+|.||++....   +.+.+++|..+..      ..+.+|...+....||||+++++++...  +..++||||+++|+|
T Consensus         4 g~~~~v~~~~~~~---~~~~~~~K~i~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~lv~e~~~~~~L   72 (237)
T cd05576           4 GVIDKVLLVMDTR---TQQTFILKGLRKS------SEYSRERLTIIPHCVPNMVCLHKYIVSE--DSVFLVLQHAEGGKL   72 (237)
T ss_pred             cccceEEEEEEcc---CCcEEEEEeecch------hhhhhHHHHHHhcCCCceeehhhheecC--CeEEEEEecCCCCCH
Confidence            8999999998543   4455556655432      1234555566666899999999998765  789999999999999


Q ss_pred             hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccc
Q 011995          266 DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA  345 (473)
Q Consensus       266 ~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t  345 (473)
                      .+++...   ..+++..+..++.|++.||.|||+.+   |+||||||+||+++.++.++++|||++...... .....++
T Consensus        73 ~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~-~~~~~~~  145 (237)
T cd05576          73 WSHISKF---LNIPEECVKRWAAEMVVALDALHREG---IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS-CDGEAVE  145 (237)
T ss_pred             HHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEecccchhccccc-cccCCcC
Confidence            9998543   35899999999999999999999999   999999999999999999999999987655432 2334456


Q ss_pred             cccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHH
Q 011995          346 AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR  425 (473)
Q Consensus       346 ~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  425 (473)
                      ..|+|||.+.+..++.++||||+||++|||++|..|+.......     .       .          .....++...+.
T Consensus       146 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-----~-------~----------~~~~~~~~~~~~  203 (237)
T cd05576         146 NMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-----N-------T----------HTTLNIPEWVSE  203 (237)
T ss_pred             ccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-----c-------c----------ccccCCcccCCH
Confidence            78999999988889999999999999999999998875321100     0       0          000012344567


Q ss_pred             HHHHHHHHhcccCCCCCCCH
Q 011995          426 TVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       426 ~l~~li~~cl~~dP~~RPt~  445 (473)
                      .+.+++.+||+.||++||++
T Consensus       204 ~~~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         204 EARSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             HHHHHHHHHccCCHHHhcCC
Confidence            89999999999999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-34  Score=280.68  Aligned_cols=243  Identities=16%  Similarity=0.246  Sum_probs=202.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .+++....||-||||.|-+........   .+++|+.+..  ......+.+..|-.||..++.|.||++|--|.++  ..
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~---~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~--ky  494 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKA---TFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDS--KY  494 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccch---HHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccc--hh
Confidence            445555789999999999998765543   2333332221  2344567788999999999999999999877665  88


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|++||-|-||.|...|+.   .+.|+..+...++.+++.|++|||+++   ||+|||||+|+||+.+|-+||.|||+|+
T Consensus       495 vYmLmEaClGGElWTiLrd---Rg~Fdd~tarF~~acv~EAfeYLH~k~---iIYRDLKPENllLd~~Gy~KLVDFGFAK  568 (732)
T KOG0614|consen  495 VYMLMEACLGGELWTILRD---RGSFDDYTARFYVACVLEAFEYLHRKG---IIYRDLKPENLLLDNRGYLKLVDFGFAK  568 (732)
T ss_pred             hhhhHHhhcCchhhhhhhh---cCCcccchhhhhHHHHHHHHHHHHhcC---ceeccCChhheeeccCCceEEeehhhHH
Confidence            9999999999999999954   457999999999999999999999999   9999999999999999999999999999


Q ss_pred             ccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          333 HIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       333 ~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .+.... ..+++||+.|.|||++.+..-+.++|.|+||+++|||++|.+||.+.++....++|......           
T Consensus       569 ki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~-----------  637 (732)
T KOG0614|consen  569 KIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDK-----------  637 (732)
T ss_pred             HhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhh-----------
Confidence            886654 45679999999999999999999999999999999999999999999988877665422110           


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPT  444 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt  444 (473)
                           -.+|..+...+.++|.++...+|.+|.-
T Consensus       638 -----i~~Pr~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  638 -----IEFPRRITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             -----hhcccccchhHHHHHHHHHhcCcHhhhc
Confidence                 1246667788899999999999999976

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=1.4e-32  Score=290.12  Aligned_cols=264  Identities=15%  Similarity=0.159  Sum_probs=165.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCC-eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeee----ec
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDA-STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFH----AR  247 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~----~~  247 (473)
                      ..++|...+.||+|+||.||+|++.++. .....+++|.  ..... ..+.+..|  .+....+.+++.++..+    ..
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~--~~~~~-~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKK--ATEYG-AVEIWMNE--RVRRACPNSCADFVYGFLEPVSS  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEE--ecccc-hhHHHHHH--HHHhhchhhHHHHHHhhhccccc
Confidence            5678999999999999999999976541 1133344443  22111 11111111  12222233333322211    11


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCC-----------------CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCC
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDG-----------------PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF  310 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~-----------------~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDl  310 (473)
                      .....++|||||+.+++|.+++......                 .......+..++.||+.||+|||+++   |+||||
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g---IiHRDL  281 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG---IVHRDV  281 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC---EEeCcC
Confidence            2337899999999999999998543210                 01123446689999999999999999   999999


Q ss_pred             CCCceeeCC-CCcEEEeccCCCcccCCC---CccCcccccccCChhhhhcC----------------------CCCCcCC
Q 011995          311 STANIQIDK-DFSAKLSGYGCAGHIPET---DISNSSVAAANLSVETLERG----------------------LLTPKSN  364 (473)
Q Consensus       311 kp~NILl~~-~~~vkl~DFGla~~~~~~---~~~~~~~t~~y~aPE~~~~~----------------------~~s~~sD  364 (473)
                      ||+|||++. ++.+||+|||+++.+...   ......+++.|||||.+...                      .++.++|
T Consensus       282 KP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~D  361 (566)
T PLN03225        282 KPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFD  361 (566)
T ss_pred             CHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcc
Confidence            999999986 589999999999765322   12345678999999976432                      2345679


Q ss_pred             chHHHHHHHHHHcCCCCCCCCChHHHHh-------HhhhcccccccccccccccccccCCCC--CHHHHHHHHHHHHHhc
Q 011995          365 VWSFGIVLLELLTGRKNLDSRHPKEERN-------LVKWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCL  435 (473)
Q Consensus       365 vwSlGvvl~elltG~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~l~~li~~cl  435 (473)
                      ||||||++|||+++..++..........       ...|......       ...+.+...+  .........+|+.+||
T Consensus       362 VwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~dLi~~mL  434 (566)
T PLN03225        362 IYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEP-------RASPDLRRGFEVLDLDGGAGWELLKSMM  434 (566)
T ss_pred             cHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhcc-------ccchhhhhhhhhccccchHHHHHHHHHc
Confidence            9999999999999776654321111000       0111110000       0000000000  0112234568999999


Q ss_pred             ccCCCCCCCHHHHHHH
Q 011995          436 QKEPSERPTMRSIFEE  451 (473)
Q Consensus       436 ~~dP~~RPt~~eil~~  451 (473)
                      +.||.+|||+.++|+.
T Consensus       435 ~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        435 RFKGRQRISAKAALAH  450 (566)
T ss_pred             cCCcccCCCHHHHhCC
Confidence            9999999999999985

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=7e-32  Score=254.22  Aligned_cols=238  Identities=21%  Similarity=0.273  Sum_probs=187.0

Q ss_pred             CCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccCCChh
Q 011995          187 LSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD  266 (473)
Q Consensus       187 ~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~  266 (473)
                      +||.||+|...++   ...+++++..........+.+.+|++.+++++|+||+++++++...  ...++++||+.+++|.
T Consensus         1 ~~g~v~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~l~~e~~~~~~L~   75 (244)
T smart00220        1 SFGKVYLARDKKT---GKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDE--DKLYLVMEYCDGGDLF   75 (244)
T ss_pred             CceEEEEEEECCC---CcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeC--CEEEEEEeCCCCCCHH
Confidence            5899999997652   2344455544333222268899999999999999999999998775  7899999999999999


Q ss_pred             hhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-CccCcccc
Q 011995          267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-DISNSSVA  345 (473)
Q Consensus       267 ~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~~t  345 (473)
                      +++...   ..+++..+..++.+++.+|.|||+.+   ++|+||+|.||+++.++.++|+|||.+...... ......++
T Consensus        76 ~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  149 (244)
T smart00220       76 DLLKKR---GRLSEDEARFYARQILSALEYLHSNG---IIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGT  149 (244)
T ss_pred             HHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCC
Confidence            998543   23899999999999999999999998   999999999999999999999999999876544 23445677


Q ss_pred             cccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCC-CCHHHH
Q 011995          346 AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR-FPLKAA  424 (473)
Q Consensus       346 ~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  424 (473)
                      ..|++||.+.+..++.++|||+||+++++|++|..||.........  ..+..    ..         ..... .....+
T Consensus       150 ~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~--~~~~~----~~---------~~~~~~~~~~~~  214 (244)
T smart00220      150 PEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLEL--FKKIG----KP---------KPPFPPPEWKIS  214 (244)
T ss_pred             cCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH--HHHHh----cc---------CCCCccccccCC
Confidence            8999999998888999999999999999999999999763222211  11100    00         00000 000155


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          425 RTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       425 ~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .++.+++.+||..+|++||++.++++
T Consensus       215 ~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      215 PEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHHHHHHHHccCCchhccCHHHHhh
Confidence            78999999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-34  Score=261.45  Aligned_cols=268  Identities=16%  Similarity=0.254  Sum_probs=199.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEec-CCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC---C
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRL-NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS---D  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~---~  251 (473)
                      +.+..+.||-|+||+||..+.   ...++.++.+.... ...-...+.+.+|+++|.-++|.|++..+++..-..-   .
T Consensus        54 Di~PDRPIGYGAFGVVWsVTD---PRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFq  130 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTD---PRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQ  130 (449)
T ss_pred             cCCCCCcccccceeEEEeccC---CCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHH
Confidence            445569999999999999984   33444444433221 1233345789999999999999999999887654321   3


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ++|+|.|+| ..+|..+|   .....++...++-+++||++||.|||+.+   |.||||||.|+|++.+..+||||||++
T Consensus       131 EiYV~TELm-QSDLHKII---VSPQ~Ls~DHvKVFlYQILRGLKYLHsA~---ILHRDIKPGNLLVNSNCvLKICDFGLA  203 (449)
T KOG0664|consen  131 ELYVLTELM-QSDLHKII---VSPQALTPDHVKVFVYQILRGLKYLHTAN---ILHRDIKPGNLLVNSNCILKICDFGLA  203 (449)
T ss_pred             HHHHHHHHH-Hhhhhhee---ccCCCCCcchhhhhHHHHHhhhHHHhhcc---hhhccCCCccEEeccCceEEecccccc
Confidence            578888988 45888888   34567899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC---ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--ccccc---
Q 011995          332 GHIPETD---ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--RPFLA---  402 (473)
Q Consensus       332 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--~~~~~---  402 (473)
                      +.....+   ++..++|..|.|||.+.|.. |+.+.||||.|||+.||+.++..|....+.+..+++...  .|..+   
T Consensus       204 Rvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr  283 (449)
T KOG0664|consen  204 RTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMK  283 (449)
T ss_pred             cccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHH
Confidence            8775443   34557899999999998765 999999999999999999999999888887776665311  11111   


Q ss_pred             ---cccccccccccccCCCC--------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          403 ---DDCRLSLIMDPQLKGRF--------PLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       403 ---~~~~~~~~~~~~l~~~~--------~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                         ++.+...+..+.-...+        +.....+...+...++..||.+|.+..+.+..+.
T Consensus       284 ~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~  345 (449)
T KOG0664|consen  284 YACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRY  345 (449)
T ss_pred             HHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhccccc
Confidence               11111111111111111        2234456778889999999999999999887654

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.9e-33  Score=247.78  Aligned_cols=262  Identities=16%  Similarity=0.203  Sum_probs=193.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|++.+++|+|-++.||.|..-.+.   .++.+++  ++  ....+.+.+|+.||..+. |||||+|+++..+..+..
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~---eK~ViKi--LK--PVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Skt  109 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNN---EKCVIKI--LK--PVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKT  109 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCC---ceEEEee--ec--hHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccC
Confidence            478999999999999999999743322   2222332  22  234578999999999996 999999999998887788


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~DFGla  331 (473)
                      ..||+||+++.+...+.      +.|+...+..++.+++.||.|||++|   |+|||+||.|++||.. ..++|+|||+|
T Consensus       110 paLiFE~v~n~Dfk~ly------~tl~d~dIryY~~elLkALdyCHS~G---ImHRDVKPhNvmIdh~~rkLrlIDWGLA  180 (338)
T KOG0668|consen  110 PSLIFEYVNNTDFKQLY------PTLTDYDIRYYIYELLKALDYCHSMG---IMHRDVKPHNVMIDHELRKLRLIDWGLA  180 (338)
T ss_pred             chhHhhhhccccHHHHh------hhhchhhHHHHHHHHHHHHhHHHhcC---cccccCCcceeeechhhceeeeeecchH
Confidence            99999999998876654      35788889999999999999999999   9999999999999865 67999999999


Q ss_pred             cccCCCCccCc-ccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCC-CCChHHHHhHhhh----------cc
Q 011995          332 GHIPETDISNS-SVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLD-SRHPKEERNLVKW----------SR  398 (473)
Q Consensus       332 ~~~~~~~~~~~-~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~-~~~~~~~~~~~~~----------~~  398 (473)
                      .+.......+. +.+..|--||.+... .|+..-|+|||||+|..|+..+.||- +.+..++...+..          ..
T Consensus       181 EFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~  260 (338)
T KOG0668|consen  181 EFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLN  260 (338)
T ss_pred             hhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHH
Confidence            98876654444 445666789998664 48999999999999999999888874 3333333222210          00


Q ss_pred             cc-cccccccccccccccCCCC--------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PF-LADDCRLSLIMDPQLKGRF--------PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~-~~~~~~~~~~~~~~l~~~~--------~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .+ +.-+.....++....+..+        ..-.++++.+|+.++|..|..+|+|+.|.+..
T Consensus       261 KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  261 KYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             HHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence            00 0011111111111111111        12245889999999999999999999998863

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=7.1e-32  Score=278.39  Aligned_cols=264  Identities=11%  Similarity=0.141  Sum_probs=179.4

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCC-------------eeeeEEEEEEEecCCCChhh--------------HhHHH
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDA-------------STSKKFEATVTRLNPSSQGV--------------KEFIN  225 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~--------------~~~~~  225 (473)
                      ..++|.+.++||+|+||+||+|.+....             ...+.+++|..... .....              +....
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~-~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMD-RQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEeccc-chhhHHHHHhhhhhhhcccchhHH
Confidence            3678999999999999999999752211             11123334433221 11111              23345


Q ss_pred             HHHHHHhCCCCCc-----ccceeeeecC------CCCceEEEEEeccCCChhhhhhcCCC--------------------
Q 011995          226 DVNTLASLQHPNL-----CKLLGFHARD------GSDQRMLIYERLFHGSLDRLIYGRSD--------------------  274 (473)
Q Consensus       226 Ei~~l~~l~HpnI-----v~l~g~~~~~------~~~~~~lV~E~~~~gsL~~~l~~~~~--------------------  274 (473)
                      |+.++.+++|.++     +++++||...      ..+..+|||||+.+++|.++++....                    
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            7777788876654     6777877542      12568999999999999999864211                    


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc-c--CcccccccCC
Q 011995          275 -GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI-S--NSSVAAANLS  350 (473)
Q Consensus       275 -~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~-~--~~~~t~~y~a  350 (473)
                       ...++|..+..++.|++.+|.|||+.+   |+||||||+|||++.++.+||+|||++........ .  ...+++.|++
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH~~~---ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~a  378 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLHRIG---IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSP  378 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeC
Confidence             123567889999999999999999999   99999999999999999999999999876533211 1  1234789999


Q ss_pred             hhhhhcCC--------------------C--CCcCCchHHHHHHHHHHcCCC-CCCCCChHHH------HhHhhhccccc
Q 011995          351 VETLERGL--------------------L--TPKSNVWSFGIVLLELLTGRK-NLDSRHPKEE------RNLVKWSRPFL  401 (473)
Q Consensus       351 PE~~~~~~--------------------~--s~~sDvwSlGvvl~elltG~~-p~~~~~~~~~------~~~~~~~~~~~  401 (473)
                      ||.+....                    +  ..+.||||+||++|+|++|.. ||........      .....|..   
T Consensus       379 PE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~---  455 (507)
T PLN03224        379 PEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRM---  455 (507)
T ss_pred             hhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHh---
Confidence            99875432                    1  124799999999999999875 6654321111      01111110   


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCC---CCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP---SERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP---~~RPt~~eil~~  451 (473)
                              .......-......+....+|+.+||..+|   .+|+|+.|+|++
T Consensus       456 --------~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        456 --------YKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             --------hcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence                    000111111123456889999999999866   689999999864

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-33  Score=244.39  Aligned_cols=200  Identities=21%  Similarity=0.278  Sum_probs=164.2

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceEEEEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      ...||+|++|.|-+-++   ...+...++|.++.....+..++.++|+.+..+. .+|.+|.+||.....  ...++.||
T Consensus        51 i~elGrGayG~vekmrh---~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~re--gdvwIcME  125 (282)
T KOG0984|consen   51 IEELGRGAYGVVEKMRH---IQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFRE--GDVWICME  125 (282)
T ss_pred             hhhhcCCccchhhheee---ccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhcc--ccEEEeHH
Confidence            37899999999888774   3345555666555555677788899999987765 799999999988766  68999999


Q ss_pred             eccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          259 RLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       259 ~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                      .|+. ||+.+..+. ..+..+++..+-+|+..+..||.|||++-  .+||||+||+||||+.+|.+|+||||++..+.+.
T Consensus       126 ~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  126 LMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             Hhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            9954 887665331 34678999999999999999999999987  6999999999999999999999999999877554


Q ss_pred             CccC-cccccccCChhhhhcC----CCCCcCCchHHHHHHHHHHcCCCCCCCCCh
Q 011995          338 DISN-SSVAAANLSVETLERG----LLTPKSNVWSFGIVLLELLTGRKNLDSRHP  387 (473)
Q Consensus       338 ~~~~-~~~t~~y~aPE~~~~~----~~s~~sDvwSlGvvl~elltG~~p~~~~~~  387 (473)
                      -..+ ..|.-.|||||.+..+    .|+.++||||||+.+.||.+++.||+....
T Consensus       203 iAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~t  257 (282)
T KOG0984|consen  203 IAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGT  257 (282)
T ss_pred             hHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCC
Confidence            3333 4566789999998543    589999999999999999999999986543

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=3.9e-31  Score=257.52  Aligned_cols=268  Identities=18%  Similarity=0.274  Sum_probs=194.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-----C---CCcccceeee
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-----H---PNLCKLLGFH  245 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----H---pnIv~l~g~~  245 (473)
                      .++|.+.++||.|.|++||+|.   +....+.+|+||.+  ......+..+.||++|++++     |   .+||+|+++|
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLaw---Dtq~~r~VAlKVvK--SAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~F  151 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAW---DTQNKRYVALKVVK--SAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHF  151 (590)
T ss_pred             CceEEEEEeccccccceeEEEe---eccCCeEEEEEEEe--hhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccc
Confidence            3678899999999999999998   44444555566554  34455677889999999983     2   3799999998


Q ss_pred             ecCC--CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---
Q 011995          246 ARDG--SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---  320 (473)
Q Consensus       246 ~~~~--~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---  320 (473)
                      ...|  +.++|||+|++ |-+|..+|... ....++...++.|++||+.||.|||..+  .|||.||||+||||..+   
T Consensus       152 khsGpNG~HVCMVfEvL-GdnLLklI~~s-~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~~e~~  227 (590)
T KOG1290|consen  152 KHSGPNGQHVCMVFEVL-GDNLLKLIKYS-NYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCSTEID  227 (590)
T ss_pred             eecCCCCcEEEEEehhh-hhHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeeccccc
Confidence            7643  46899999999 66888888654 3455899999999999999999999998  79999999999997211   


Q ss_pred             --------C-----------------------------------------------------------------------
Q 011995          321 --------F-----------------------------------------------------------------------  321 (473)
Q Consensus       321 --------~-----------------------------------------------------------------------  321 (473)
                              +                                                                       
T Consensus       228 ~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~~~~~~~~~s~n~~~  307 (590)
T KOG1290|consen  228 PAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEGIEEEPNQESYNNEP  307 (590)
T ss_pred             hhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhhhhccccccccccccccccccc
Confidence                    0                                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 011995          322 --------------------------------------------------------------------------------  321 (473)
Q Consensus       322 --------------------------------------------------------------------------------  321 (473)
                                                                                                      
T Consensus       308 ~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~s~~s~~~~~~n~~v~p~~~~~  387 (590)
T KOG1290|consen  308 RINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLSSPSSPGTIASNPLVNPDIPLP  387 (590)
T ss_pred             CCCccccchhhcccccccccccCCccccccCccccccccccccchhcccccccccccccCcCCccccccccccCCCCCCC
Confidence                                                                                            


Q ss_pred             ----cEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh----HHH--H
Q 011995          322 ----SAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP----KEE--R  391 (473)
Q Consensus       322 ----~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~----~~~--~  391 (473)
                          .+||+|||-|+.+.. .++....|..|.|||++.+..|+..+||||++|+++||+||...|+....    .++  .
T Consensus       388 ~~di~vKIaDlGNACW~~k-hFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHi  466 (590)
T KOG1290|consen  388 ECDIRVKIADLGNACWVHK-HFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHI  466 (590)
T ss_pred             ccceeEEEeeccchhhhhh-hhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHH
Confidence                023333333332211 12233446789999999999999999999999999999999999964321    111  1


Q ss_pred             h-Hhh--------------hccccccccccccccccc---cc------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          392 N-LVK--------------WSRPFLADDCRLSLIMDP---QL------KGRFPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       392 ~-~~~--------------~~~~~~~~~~~~~~~~~~---~l------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                      . +++              +.+-+......+..+-.-   .+      ...|+.+...++.+|+.-||+.+|++||||.+
T Consensus       467 A~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~  546 (590)
T KOG1290|consen  467 ALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQ  546 (590)
T ss_pred             HHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHH
Confidence            1 111              223333333333322111   11      12467888999999999999999999999999


Q ss_pred             HHHH
Q 011995          448 IFEE  451 (473)
Q Consensus       448 il~~  451 (473)
                      +|+.
T Consensus       547 cl~h  550 (590)
T KOG1290|consen  547 CLKH  550 (590)
T ss_pred             HhcC
Confidence            9853

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.8e-32  Score=273.25  Aligned_cols=240  Identities=18%  Similarity=0.229  Sum_probs=183.1

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |...+.||-|+||.|.+++--|.   ...++.|..+..+  .......++.|-+||.....+.||+||-.|.+.  +++|
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT---~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDk--dnLY  705 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDT---RALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDK--DNLY  705 (1034)
T ss_pred             eEEEeeecccccceeEEEeecch---hhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccC--CceE
Confidence            55667899999999999974433   3334444333221  233446678899999999999999998777665  8999


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||++||++-.+|.+.   +-|.+..+..++.++.+|+++.|..|   +|||||||+|||||.+|.+||.||||++-+
T Consensus       706 FVMdYIPGGDmMSLLIrm---gIFeE~LARFYIAEltcAiesVHkmG---FIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  706 FVMDYIPGGDMMSLLIRM---GIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             EEEeccCCccHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHHHhcc---ceecccCccceEEccCCceeeeeccccccc
Confidence            999999999999988643   35888888889999999999999999   999999999999999999999999997533


Q ss_pred             C---------CCC-----------------------------------ccCcccccccCChhhhhcCCCCCcCCchHHHH
Q 011995          335 P---------ETD-----------------------------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGI  370 (473)
Q Consensus       335 ~---------~~~-----------------------------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGv  370 (473)
                      .         +++                                   ....+||+.|+|||++....|+..+|+||.||
T Consensus       780 RWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gv  859 (1034)
T KOG0608|consen  780 RWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGV  859 (1034)
T ss_pred             eeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhH
Confidence            1         000                                   01336789999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCChHHHHh-HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC
Q 011995          371 VLLELLTGRKNLDSRHPKEERN-LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP  443 (473)
Q Consensus       371 vl~elltG~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP  443 (473)
                      |||||+.|++||....+.+... ++.|.. +              +.-.+..+++.++.++|.++. -+++.|.
T Consensus       860 il~em~~g~~pf~~~tp~~tq~kv~nw~~-~--------------l~~~~~~~ls~e~~~li~kLc-~sad~RL  917 (1034)
T KOG0608|consen  860 ILYEMLVGQPPFLADTPGETQYKVINWRN-F--------------LHIPYQGNLSKEALDLIQKLC-CSADSRL  917 (1034)
T ss_pred             HHHHHhhCCCCccCCCCCcceeeeeehhh-c--------------cccccccccCHHHHHHHHHHh-cChhhhh
Confidence            9999999999998766655433 233322 1              111224566777888876543 3556664

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-32  Score=278.96  Aligned_cols=242  Identities=19%  Similarity=0.272  Sum_probs=181.6

Q ss_pred             cccCcceeecCCce-EEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceE
Q 011995          177 FFSDRCISEGLSSV-MYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       177 f~~~~~lG~G~~g~-Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      |...+++|.|+.|+ ||+|.+.+..       |+||++-.  ....-..+||..|+.- .|||||++|+  .+.+..++|
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~-------VAVKrll~--e~~~~A~rEi~lL~eSD~H~NviRyyc--~E~d~qF~Y  579 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGRE-------VAVKRLLE--EFFDFAQREIQLLQESDEHPNVIRYYC--SEQDRQFLY  579 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCce-------ehHHHHhh--HhHHHHHHHHHHHHhccCCCceEEEEe--eccCCceEE
Confidence            44557789999986 9999987764       55555532  2234457999999988 7999999954  555558999


Q ss_pred             EEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---C--CcEEEecc
Q 011995          255 LIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---D--FSAKLSGY  328 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~--~~vkl~DF  328 (473)
                      |+.|.|.. +|.+++... .+.....-.....++.|++.||++||+-+   ||||||||.||||+.   +  ..++|+||
T Consensus       580 IalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~---iVHRDLkPQNILI~~~~~~~~~ra~iSDf  655 (903)
T KOG1027|consen  580 IALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK---IVHRDLKPQNILISVPSADGTLRAKISDF  655 (903)
T ss_pred             EEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc---cccccCCCceEEEEccCCCcceeEEeccc
Confidence            99999955 999999653 11111111445778899999999999988   999999999999965   3  57999999


Q ss_pred             CCCcccCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcC-CCCCCCCChHHHHhHhhhcccccc
Q 011995          329 GCAGHIPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTG-RKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       329 Gla~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      |+++.+..+.     ..+..||-+|+|||.+....-+.++||||||||+|+.++| ..||.+....+.. ++       .
T Consensus       656 glsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~N-Il-------~  727 (903)
T KOG1027|consen  656 GLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQAN-IL-------T  727 (903)
T ss_pred             ccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhh-hh-------c
Confidence            9998875442     3456789999999999999889999999999999999886 8999865332221 11       1


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ....+..+..       ...  .++.+||.+|+..||..||++.+||.
T Consensus       728 ~~~~L~~L~~-------~~d--~eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  728 GNYTLVHLEP-------LPD--CEAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             Cccceeeecc-------Cch--HHHHHHHHHhcCCCcccCCCHHHHhC
Confidence            1111111100       111  18899999999999999999999985

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=249.76  Aligned_cols=250  Identities=18%  Similarity=0.283  Sum_probs=194.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|...++||+|+|+.|..+.+..   +...+++|+++..  ...+...-+..|-.+..+. +||.+|-|+.+|.++  
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~---t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqte--  323 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKK---TDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTE--  323 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcc---cceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhccc--
Confidence            4678888999999999999998544   4456666665433  3444556667787777776 799999999998877  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ..+++|.||++||+|--++.+   ...+++..+..+..+|..||.|||++|   ||+||||.+|||||..|.+||.|||.
T Consensus       324 srlffvieyv~ggdlmfhmqr---qrklpeeharfys~ei~lal~flh~rg---iiyrdlkldnvlldaeghikltdygm  397 (593)
T KOG0695|consen  324 SRLFFVIEYVNGGDLMFHMQR---QRKLPEEHARFYSAEICLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGM  397 (593)
T ss_pred             ceEEEEEEEecCcceeeehhh---hhcCcHHHhhhhhHHHHHHHHHHhhcC---eeeeeccccceEEccCCceeecccch
Confidence            789999999999999666643   346999999999999999999999999   99999999999999999999999998


Q ss_pred             Cccc--CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHI--PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~--~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .+.-  +....++.+||+.|+|||.+.+..|+..+|+|+|||+++||+.|+.||+.-......        ...++..+.
T Consensus       398 cke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d--------~ntedylfq  469 (593)
T KOG0695|consen  398 CKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPD--------MNTEDYLFQ  469 (593)
T ss_pred             hhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcc--------cchhHHHHH
Confidence            8653  233456779999999999999999999999999999999999999999632110000        000111122


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT  444 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt  444 (473)
                      .++..++  .+|...+-.+..+++.-|.+||.+|..
T Consensus       470 vilekqi--riprslsvkas~vlkgflnkdp~erlg  503 (593)
T KOG0695|consen  470 VILEKQI--RIPRSLSVKASHVLKGFLNKDPKERLG  503 (593)
T ss_pred             HHhhhcc--cccceeehhhHHHHHHhhcCCcHHhcC
Confidence            2222222  235566677788899999999999964

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.97  E-value=1.7e-31  Score=261.40  Aligned_cols=267  Identities=18%  Similarity=0.220  Sum_probs=207.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC------CCCcccceeeeec
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ------HPNLCKLLGFHAR  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~------HpnIv~l~g~~~~  247 (473)
                      -..|.+....|.|-|++|.+|..   ...+..+|+++++.+  +...+.=+.|++||.+|+      --|+++|+-.|..
T Consensus       431 D~RY~V~~~~GkGvFs~Vvra~D---~~r~~~vAiKIIRnN--E~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~h  505 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFSTVVRARD---QARGQEVAIKIIRNN--EVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKH  505 (752)
T ss_pred             cceeEEEeccccceeeeeeeccc---cCCCCeeEEEEeecc--hHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhh
Confidence            45688888899999999999984   333346666666643  344566678999999995      2378888877765


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEe
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLS  326 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~  326 (473)
                      .  +++|||+|-+ ..+|.++|........|....+..++.|+.-||..|..-+   |+|.||||+|||+++. ..+|||
T Consensus       506 k--nHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~---vlHaDIKPDNiLVNE~k~iLKLC  579 (752)
T KOG0670|consen  506 K--NHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCG---VLHADIKPDNILVNESKNILKLC  579 (752)
T ss_pred             c--ceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcC---eeecccCccceEeccCcceeeec
Confidence            5  8999999987 5599999977666667888999999999999999999998   9999999999999876 668999


Q ss_pred             ccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc---------
Q 011995          327 GYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS---------  397 (473)
Q Consensus       327 DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~---------  397 (473)
                      |||.|..+..+..+...++.-|.|||++.|-.|+...|+||.||.||||+||+..|.+....++..+.+-.         
T Consensus       580 DfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~Kml  659 (752)
T KOG0670|consen  580 DFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKML  659 (752)
T ss_pred             cCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHh
Confidence            99999999888888888899999999999999999999999999999999999999998776655443200         


Q ss_pred             ------cccccccccccc----------------cccc------ccCC--CC---CHHHHHHHHHHHHHhcccCCCCCCC
Q 011995          398 ------RPFLADDCRLSL----------------IMDP------QLKG--RF---PLKAARTVADIALRCLQKEPSERPT  444 (473)
Q Consensus       398 ------~~~~~~~~~~~~----------------~~~~------~l~~--~~---~~~~~~~l~~li~~cl~~dP~~RPt  444 (473)
                            ..+...++.+..                .+.|      .+..  .+   .......+.+|+..||..||++|.|
T Consensus       660 RKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit  739 (752)
T KOG0670|consen  660 RKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRIT  739 (752)
T ss_pred             hhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCC
Confidence                  000111110000                0111      0000  11   2356678899999999999999999


Q ss_pred             HHHHHHH
Q 011995          445 MRSIFEE  451 (473)
Q Consensus       445 ~~eil~~  451 (473)
                      ..+.|+.
T Consensus       740 ~nqAL~H  746 (752)
T KOG0670|consen  740 VNQALKH  746 (752)
T ss_pred             HHHHhcC
Confidence            9998863

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=268.67  Aligned_cols=251  Identities=22%  Similarity=0.319  Sum_probs=206.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+....+|.|+||.||+++   +....+..+++++++... ....-+..|+-+++.++|+|||.++|-+...  +.++
T Consensus        15 ddyellqrvgsgTygdvyKaR---d~~s~elaavkvVkLep~-dd~~~iqqei~~~~dc~h~nivay~gsylr~--dklw   88 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKAR---DKRSGELAAVKVVKLEPG-DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRR--DKLW   88 (829)
T ss_pred             cchhheeeecCCcccchhhhc---ccccCchhhheeeeccCC-ccccccccceeeeecCCCcChHHHHhhhhhh--cCcE
Confidence            567777999999999999998   566667777888777643 3456677899999999999999999988876  8899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ++||||.+|+|.+..+   ..+++++.++..+.++.++||+|||+++   -+|||||-.|||++..|.+|++|||.+..+
T Consensus        89 icMEycgggslQdiy~---~TgplselqiayvcRetl~gl~ylhs~g---k~hRdiKGanilltd~gDvklaDfgvsaqi  162 (829)
T KOG0576|consen   89 ICMEYCGGGSLQDIYH---VTGPLSELQIAYVCRETLQGLKYLHSQG---KIHRDIKGANILLTDEGDVKLADFGVSAQI  162 (829)
T ss_pred             EEEEecCCCcccceee---ecccchhHHHHHHHhhhhccchhhhcCC---cccccccccceeecccCceeecccCchhhh
Confidence            9999999999999874   3457999999999999999999999999   899999999999999999999999998766


Q ss_pred             CCC--CccCcccccccCChhhh---hcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETL---ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~---~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ...  ....+.||+.|||||+-   ..+.|...+|||++|+...|+---++|....++.....+....           .
T Consensus       163 tati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS-----------~  231 (829)
T KOG0576|consen  163 TATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKS-----------G  231 (829)
T ss_pred             hhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhcc-----------C
Confidence            433  33567899999999986   4567999999999999999999999987766655443322111           1


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...+.+++  ....+..+.+|++.||.++|.+||+++.+|+
T Consensus       232 ~qpp~lkD--k~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  232 FQPPTLKD--KTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             CCCCcccC--CccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            11122222  4567788999999999999999999998775

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.97  E-value=6.2e-29  Score=228.20  Aligned_cols=211  Identities=27%  Similarity=0.470  Sum_probs=177.2

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccC
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFH  262 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~  262 (473)
                      ||+|.+|.||++...+   ..+.+.+|+............+.+|++.++.+.|++|+++++++...  ...++++||+.+
T Consensus         1 l~~g~~~~v~~~~~~~---~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--~~~~~~~e~~~~   75 (215)
T cd00180           1 LGEGGFGTVYLARDKK---TGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDE--NHLYLVMEYCEG   75 (215)
T ss_pred             CCcCCceEEEEEEecC---CCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecC--CeEEEEEecCCC
Confidence            6899999999998654   23344455444332222457899999999999999999999998765  789999999999


Q ss_pred             CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEEeccCCCcccCCCC--c
Q 011995          263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKLSGYGCAGHIPETD--I  339 (473)
Q Consensus       263 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl~DFGla~~~~~~~--~  339 (473)
                      ++|.+++....  ..+++..+..++.+++.+|.|||+.+   ++|+||+|.||+++. ++.++|+|||.+.......  .
T Consensus        76 ~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~---~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~  150 (215)
T cd00180          76 GSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHSNG---IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLL  150 (215)
T ss_pred             CcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchh
Confidence            99999985431  46899999999999999999999999   999999999999999 8999999999987665442  3


Q ss_pred             cCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCC
Q 011995          340 SNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR  418 (473)
Q Consensus       340 ~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  418 (473)
                      ........|++||.+... .++.++|+|++|+++++|                                           
T Consensus       151 ~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------------------------------  187 (215)
T cd00180         151 KTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------------------------------  187 (215)
T ss_pred             hcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------------------------------------
Confidence            445567899999999877 788999999999999999                                           


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       419 ~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                            ..+.+++..|+..||++||++.++++.|
T Consensus       188 ------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 ------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             ------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                  3467999999999999999999998753

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-30  Score=258.22  Aligned_cols=199  Identities=19%  Similarity=0.215  Sum_probs=167.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC---CC----ChhhHhHHHHHHHHHhCC---CCCccccee
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN---PS----SQGVKEFINDVNTLASLQ---HPNLCKLLG  243 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~Ei~~l~~l~---HpnIv~l~g  243 (473)
                      ..+|.....||+|+||.|+.|.++.+.   ..+.+|.+...   ..    ....-.+-.||+||..++   |+||+++++
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~---~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLd  636 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENN---YEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLD  636 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccc---eEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhh
Confidence            346888899999999999999976653   22222222111   01    111234667999999997   999999999


Q ss_pred             eeecCCCCceEEEEEec-cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc
Q 011995          244 FHARDGSDQRMLIYERL-FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS  322 (473)
Q Consensus       244 ~~~~~~~~~~~lV~E~~-~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~  322 (473)
                      ||+++  +++||+||-. ++.+|+++|.   -.+.+++..+..|+.||+.|+++||+.+   |||||||-+||.++.+|.
T Consensus       637 fFEdd--d~yyl~te~hg~gIDLFd~IE---~kp~m~E~eAk~IFkQV~agi~hlh~~~---ivhrdikdenvivd~~g~  708 (772)
T KOG1152|consen  637 FFEDD--DYYYLETEVHGEGIDLFDFIE---FKPRMDEPEAKLIFKQVVAGIKHLHDQG---IVHRDIKDENVIVDSNGF  708 (772)
T ss_pred             eeecC--CeeEEEecCCCCCcchhhhhh---ccCccchHHHHHHHHHHHhccccccccC---ceecccccccEEEecCCe
Confidence            99887  8999999975 4569999994   3457999999999999999999999999   999999999999999999


Q ss_pred             EEEeccCCCcccCCCCccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCC
Q 011995          323 AKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      +||+|||.+....+.....++||..|.|||++.|..| +..-|||++|++||-++..+.||.
T Consensus       709 ~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  709 VKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             EEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            9999999999888888889999999999999999887 567999999999999999998885

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-30  Score=239.72  Aligned_cols=264  Identities=16%  Similarity=0.229  Sum_probs=191.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC----
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG----  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~----  249 (473)
                      .+|...+.+|.|.- .|..+.   +......++++..... ......++..+|..++..+.|+||++++.++.-..    
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~---D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~   92 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAF---DQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEE   92 (369)
T ss_pred             eeeeeecccCCCCc-eEEecc---hhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHH
Confidence            45666688888888 555554   3333344334333222 23444577789999999999999999999886432    


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ....|+||||| .++|...+.-     .++-.++..|..|++.|+.|||+.+   |+||||||+||++..+..+||.|||
T Consensus        93 ~~e~y~v~e~m-~~nl~~vi~~-----elDH~tis~i~yq~~~~ik~lhs~~---IihRdLkPsnivv~~~~~lKi~dfg  163 (369)
T KOG0665|consen   93 FQEVYLVMELM-DANLCQVILM-----ELDHETISYILYQMLCGIKHLHSAG---IIHRDLKPSNIVVNSDCTLKILDFG  163 (369)
T ss_pred             HHhHHHHHHhh-hhHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHhcc---eeecccCcccceecchhheeeccch
Confidence            24689999999 4599888852     3677899999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-------------
Q 011995          330 CAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-------------  395 (473)
Q Consensus       330 la~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-------------  395 (473)
                      +|+..... ..+..++|..|.|||++.+-.|...+||||+||++.||++|...|.+.+-.++...+.             
T Consensus       164 ~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~q  243 (369)
T KOG0665|consen  164 LARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQ  243 (369)
T ss_pred             hhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHH
Confidence            99876555 4566688999999999998889999999999999999999999998765433222111             


Q ss_pred             ---hccccccccc-----ccc-cccccccCC--CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          396 ---WSRPFLADDC-----RLS-LIMDPQLKG--RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       396 ---~~~~~~~~~~-----~~~-~~~~~~l~~--~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         -++.+.....     ... .+.|.....  ..+......+++++.+||..||++|.+++++|+.
T Consensus       244 L~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  244 LQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             hhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence               0000000000     000 000111110  0112334568899999999999999999999864

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.96  E-value=9.4e-28  Score=223.96  Aligned_cols=198  Identities=21%  Similarity=0.303  Sum_probs=164.1

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      |...+.||.|++|.||++...++   .+.++++.............+.+|++.+..++|+|++++++++...  ...+++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~---~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~--~~~~~v   75 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGT---GELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDP--EPLYLV   75 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCC---CcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecC--CceEEE
Confidence            45668899999999999987652   2344444444322222567889999999999999999999998765  789999


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      +||+++++|.+++....  ..+++..+..++.+++.+|.|||+.+   ++|+||++.||+++.++.++|+|||++.....
T Consensus        76 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~  150 (225)
T smart00221       76 MEYCEGGDLFDYLRKKG--GKLSEEEARFYLRQILEALEYLHSLG---IVHRDLKPENILLGMDGLVKLADFGLARFIHR  150 (225)
T ss_pred             EeccCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeCceeeEecC
Confidence            99999999999985432  12889999999999999999999998   99999999999999999999999999887654


Q ss_pred             C---CccCcccccccCChhhh-hcCCCCCcCCchHHHHHHHHHHcCCCCCCC
Q 011995          337 T---DISNSSVAAANLSVETL-ERGLLTPKSNVWSFGIVLLELLTGRKNLDS  384 (473)
Q Consensus       337 ~---~~~~~~~t~~y~aPE~~-~~~~~s~~sDvwSlGvvl~elltG~~p~~~  384 (473)
                      .   ......++..|++||.+ ....++.++|||+||++++||++|+.||..
T Consensus       151 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      151 DLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            3   22334567889999998 666688899999999999999999999976

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.95  E-value=5.6e-28  Score=232.65  Aligned_cols=268  Identities=17%  Similarity=0.232  Sum_probs=190.7

Q ss_pred             HHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecC
Q 011995          170 VAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD  248 (473)
Q Consensus       170 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~  248 (473)
                      +....+.|...++||+|+|++||++++.........++++.+...   .....+.+|+++|..+ .+.||+++.+++..+
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t---s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnn  107 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT---SSPSRILNELEMLYRLGGSDNIIKLNGCFRNN  107 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc---cCchHHHHHHHHHHHhccchhhhcchhhhccC
Confidence            334557788999999999999999986553223344445444433   2336688999999999 699999999988665


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEec
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSG  327 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~D  327 (473)
                        +..++|+||+++....+++.      .++...+..+++.++.||.++|..|   ||||||||+|+|.+.. +.-.|+|
T Consensus       108 --d~v~ivlp~~~H~~f~~l~~------~l~~~~i~~Yl~~ll~Al~~~h~~G---IvHRDiKpsNFL~n~~t~rg~LvD  176 (418)
T KOG1167|consen  108 --DQVAIVLPYFEHDRFRDLYR------SLSLAEIRWYLRNLLKALAHLHKNG---IVHRDIKPSNFLYNRRTQRGVLVD  176 (418)
T ss_pred             --CeeEEEecccCccCHHHHHh------cCCHHHHHHHHHHHHHHhhhhhccC---ccccCCCccccccccccCCceEEe
Confidence              89999999999999988873      2678999999999999999999999   9999999999999854 7788999


Q ss_pred             cCCCccc-----------------CC--C---------------C------------ccCcccccccCChhhhhcC-CCC
Q 011995          328 YGCAGHI-----------------PE--T---------------D------------ISNSSVAAANLSVETLERG-LLT  360 (473)
Q Consensus       328 FGla~~~-----------------~~--~---------------~------------~~~~~~t~~y~aPE~~~~~-~~s  360 (473)
                      ||+|...                 ..  .               .            .....||++|.|||++... ..+
T Consensus       177 FgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Qt  256 (418)
T KOG1167|consen  177 FGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQT  256 (418)
T ss_pred             chhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcC
Confidence            9998611                 00  0               0            0123578999999998654 478


Q ss_pred             CcCCchHHHHHHHHHHcCCCCCCCCChH--HHHhHh-------------------hhcccc---cccc-cccccc-cccc
Q 011995          361 PKSNVWSFGIVLLELLTGRKNLDSRHPK--EERNLV-------------------KWSRPF---LADD-CRLSLI-MDPQ  414 (473)
Q Consensus       361 ~~sDvwSlGvvl~elltG~~p~~~~~~~--~~~~~~-------------------~~~~~~---~~~~-~~~~~~-~~~~  414 (473)
                      .++||||.|||++.+++++.||-.....  ...+++                   .|....   +... .....+ ....
T Consensus       257 taiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~  336 (418)
T KOG1167|consen  257 TAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESI  336 (418)
T ss_pred             CccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhc
Confidence            9999999999999999999998543211  001111                   011000   0000 000000 0000


Q ss_pred             -------c-CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          415 -------L-KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       415 -------l-~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             . ........+..+.+|+.+|+..||.+|.|+++.|+.
T Consensus       337 ~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkH  381 (418)
T KOG1167|consen  337 YKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKH  381 (418)
T ss_pred             ccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcC
Confidence                   0 011122334578899999999999999999998863

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.8e-28  Score=219.02  Aligned_cols=255  Identities=15%  Similarity=0.244  Sum_probs=182.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ..+.|.+.+.||+|.||.+-++.++....     .++++.........++|.+|..---.| .|.||+.-|+..... .+
T Consensus        22 l~d~y~I~k~lgeG~FgkIlL~eHr~s~t-----~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt-~d   95 (378)
T KOG1345|consen   22 LEDVYTINKQLGEGRFGKILLAEHRQSKT-----RIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQT-SD   95 (378)
T ss_pred             hhhhhhHHHHhcccceeeEEeeeccCCce-----EEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhc-Cc
Confidence            34678888999999999999998765433     244444555556678899998765555 689999888654433 37


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee-C-CCCcEEEeccC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI-D-KDFSAKLSGYG  329 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl-~-~~~~vkl~DFG  329 (473)
                      .+++++||++-|+|..-+..    ..+.+....+++.|+++||.|+|+++   +||||||.+|||| + +...+||||||
T Consensus        96 ~YvF~qE~aP~gdL~snv~~----~GigE~~~K~v~~ql~SAi~fMHskn---lVHRdlK~eNiLif~~df~rvKlcDFG  168 (378)
T KOG1345|consen   96 AYVFVQEFAPRGDLRSNVEA----AGIGEANTKKVFAQLLSAIEFMHSKN---LVHRDLKAENILIFDADFYRVKLCDFG  168 (378)
T ss_pred             eEEEeeccCccchhhhhcCc----ccccHHHHHHHHHHHHHHHHHhhccc---hhhcccccceEEEecCCccEEEeeecc
Confidence            88999999999999887733    34788999999999999999999999   9999999999999 3 34589999999


Q ss_pred             CCcccCCCCccCcccccccCChhhhhcC-----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH--HhHhhhcccccc
Q 011995          330 CAGHIPETDISNSSVAAANLSVETLERG-----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLA  402 (473)
Q Consensus       330 la~~~~~~~~~~~~~t~~y~aPE~~~~~-----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~--~~~~~~~~~~~~  402 (473)
                      +.+..... ......+..|-+||.....     ...+.+|||.||++++.++||.+||.....+..  -....|...   
T Consensus       169 ~t~k~g~t-V~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~r---  244 (378)
T KOG1345|consen  169 LTRKVGTT-VKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKR---  244 (378)
T ss_pred             cccccCce-ehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcc---
Confidence            87654221 1112235678899987432     257889999999999999999999974332221  112222211   


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                              ..+.++..|. -.++.+..+.++-|..++++|--..++-+...
T Consensus       245 --------k~~~~P~~F~-~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk  286 (378)
T KOG1345|consen  245 --------KNPALPKKFN-PFSEKALRLFKKSLTPRFKDRCKIWTAKKMRK  286 (378)
T ss_pred             --------cCccCchhhc-ccCHHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence                    1122222221 23466778889999999999954444444433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=5.1e-28  Score=267.16  Aligned_cols=195  Identities=19%  Similarity=0.203  Sum_probs=140.5

Q ss_pred             hCCC-CCcccceeeeecCC-----CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCce
Q 011995          232 SLQH-PNLCKLLGFHARDG-----SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQA  305 (473)
Q Consensus       232 ~l~H-pnIv~l~g~~~~~~-----~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~i  305 (473)
                      .++| .||+.++++|....     .+.+++++||+ +++|.++|..  ....+++..++.++.||+.||+|||+++   |
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~g---I  101 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDN--PDRSVDAFECFHVFRQIVEIVNAAHSQG---I  101 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhc--ccccccHHHHHHHHHHHHHHHHHHHhCC---e
Confidence            4455 58888888772211     14677888987 6699999953  2356999999999999999999999999   9


Q ss_pred             eecCCCCCceeeCC-------------------CCcEEEeccCCCcccCCC------------------CccCccccccc
Q 011995          306 MYNEFSTANIQIDK-------------------DFSAKLSGYGCAGHIPET------------------DISNSSVAAAN  348 (473)
Q Consensus       306 vHrDlkp~NILl~~-------------------~~~vkl~DFGla~~~~~~------------------~~~~~~~t~~y  348 (473)
                      |||||||+||||+.                   ++.+||+|||+++.....                  ......+|++|
T Consensus       102 vHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  181 (793)
T PLN00181        102 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWY  181 (793)
T ss_pred             eeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcce
Confidence            99999999999954                   455667777776542110                  00113468889


Q ss_pred             CChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHH
Q 011995          349 LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVA  428 (473)
Q Consensus       349 ~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  428 (473)
                      ||||++.+..++.++|||||||+||||++|.+|+......  ...+...            ...+.     .........
T Consensus       182 ~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~--~~~~~~~------------~~~~~-----~~~~~~~~~  242 (793)
T PLN00181        182 TSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRT--MSSLRHR------------VLPPQ-----ILLNWPKEA  242 (793)
T ss_pred             EChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHH--HHHHHHh------------hcChh-----hhhcCHHHH
Confidence            9999999999999999999999999999998887532111  0000000            00000     011123456


Q ss_pred             HHHHHhcccCCCCCCCHHHHHHH
Q 011995          429 DIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       429 ~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +++.+||++||.+||++.||++.
T Consensus       243 ~~~~~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        243 SFCLWLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             HHHHHhCCCChhhCcChHHHhhc
Confidence            88999999999999999999863

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.94  E-value=8.4e-27  Score=210.27  Aligned_cols=170  Identities=21%  Similarity=0.211  Sum_probs=129.1

Q ss_pred             CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCc
Q 011995          263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNS  342 (473)
Q Consensus       263 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~  342 (473)
                      |+|.+++..+  +..+++..+..|+.||+.||.|||+++         ||+|||++.++.+|+  ||++......   ..
T Consensus         1 GsL~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~~~---~~   64 (176)
T smart00750        1 VSLADILEVR--GRPLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKTPE---QS   64 (176)
T ss_pred             CcHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeeccc---cC
Confidence            6899999542  456999999999999999999999986         999999999999999  9998765432   23


Q ss_pred             ccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHH
Q 011995          343 SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLK  422 (473)
Q Consensus       343 ~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (473)
                      .+++.|||||++.+..++.++|||||||++|||++|+.||.......... ..+.......        .+.. ...+..
T Consensus        65 ~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~-~~~~~~~~~~--------~~~~-~~~~~~  134 (176)
T smart00750       65 RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAIL-EILLNGMPAD--------DPRD-RSNLES  134 (176)
T ss_pred             CCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHH-HHHHHHhccC--------Cccc-cccHHH
Confidence            67899999999999999999999999999999999999997543221110 0000000000        0000 011223


Q ss_pred             HHH--HHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          423 AAR--TVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       423 ~~~--~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ...  ++.+++.+||..||.+||++.++++.+..+..+
T Consensus       135 ~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      135 VSAARSFADFMRVCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             HHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            333  699999999999999999999999999876543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-24  Score=213.04  Aligned_cols=261  Identities=17%  Similarity=0.164  Sum_probs=195.5

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC----CCcccceeeeecCCCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH----PNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H----pnIv~l~g~~~~~~~~  251 (473)
                      +|.+.+.||+|+||.||.+......  .+.+++++.......... .+..|+.++..+..    .++..+++... ....
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~--~~~~a~K~e~~~~~~~~~-~l~~E~~vl~~l~~~~~~~~~~~~~~~G~-~~~~   94 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEK--NKEYAKKLEKKELGSKPS-VLKIEIQVLKKLEKKNGPSHFPKLLDHGR-STED   94 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCC--CeeEEEEEEEecccCCCc-cchhHHHHHHHHhhhcCCCCCCEEEEecc-CCCc
Confidence            7999999999999999999855443  344555555543222222 78889999999873    57888887763 1226


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-----CcEEEe
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-----FSAKLS  326 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-----~~vkl~  326 (473)
                      ..|+||+.+ |.+|.++..... ...++..+.+.|+.|++.+|++||+.|   +|||||||.|++++..     ..+.|.
T Consensus        95 ~~~iVM~l~-G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~~G---~iHRDiKp~N~~~g~~~~~~~~~~~ll  169 (322)
T KOG1164|consen   95 FNFIVMSLL-GPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHSKG---FIHRDIKPENFVVGQSSRSEVRTLYLL  169 (322)
T ss_pred             eeEEEEecc-CccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHhcC---cccCCcCHHHeeecCCCCcccceEEEE
Confidence            789999988 779999875443 578999999999999999999999999   9999999999999754     469999


Q ss_pred             ccCCCc--ccCCCC----------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh
Q 011995          327 GYGCAG--HIPETD----------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV  394 (473)
Q Consensus       327 DFGla~--~~~~~~----------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~  394 (473)
                      |||+++  .+....          .....||..|.++.+..+...+.+.|+||++.++.||+.|..||............
T Consensus       170 DfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~  249 (322)
T KOG1164|consen  170 DFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKF  249 (322)
T ss_pred             ecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHH
Confidence            999998  321111          12345899999999999999999999999999999999999999765432221111


Q ss_pred             h-hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          395 K-WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       395 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      . ......         ...     +.......+.++...+-..+...+|....+...|+......
T Consensus       250 ~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  250 EKDPRKLL---------TDR-----FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             HHHhhhhc---------ccc-----ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            1 000000         000     12233466777777777799999999999999998876654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-25  Score=205.14  Aligned_cols=249  Identities=22%  Similarity=0.336  Sum_probs=194.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEec
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      .+|.+...|..|+|+|.++....+...+.-    ......+.|..|.-.|+-+.||||+.++|.|...  .++.++..||
T Consensus       196 tkl~e~hsgelwrgrwqgndivakil~vr~----~t~risrdfneefp~lrifshpnilpvlgacnsp--pnlv~isq~m  269 (448)
T KOG0195|consen  196 TKLAESHSGELWRGRWQGNDIVAKILNVRE----VTARISRDFNEEFPALRIFSHPNILPVLGACNSP--PNLVIISQYM  269 (448)
T ss_pred             hhhccCCCcccccccccCcchhhhhhhhhh----cchhhcchhhhhCcceeeecCCchhhhhhhccCC--CCceEeeeec
Confidence            568889999999999998876544333221    1334456788999999999999999999999776  7889999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS  340 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~  340 (473)
                      +.|||+..|+.. .+..++-.++.+++.+|++|++|||+..+. |----|....|+||++.+++|+ ++-+++..  ...
T Consensus       270 p~gslynvlhe~-t~vvvd~sqav~faldiargmaflhslep~-ipr~~lns~hvmidedltaris-mad~kfsf--qe~  344 (448)
T KOG0195|consen  270 PFGSLYNVLHEQ-TSVVVDHSQAVRFALDIARGMAFLHSLEPM-IPRFYLNSKHVMIDEDLTARIS-MADTKFSF--QEV  344 (448)
T ss_pred             cchHHHHHHhcC-ccEEEecchHHHHHHHHHhhHHHHhhcchh-hhhhhcccceEEecchhhhhee-cccceeee--ecc
Confidence            999999999764 344567789999999999999999999842 3344788999999999988874 22122111  112


Q ss_pred             CcccccccCChhhhhcCCC---CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCC
Q 011995          341 NSSVAAANLSVETLERGLL---TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG  417 (473)
Q Consensus       341 ~~~~t~~y~aPE~~~~~~~---s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  417 (473)
                      .....+.||+||.++...-   -.++|+|||++++|||.|.+.||.+..+.+..-.+.                -..++.
T Consensus       345 gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkia----------------leglrv  408 (448)
T KOG0195|consen  345 GRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIA----------------LEGLRV  408 (448)
T ss_pred             ccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhh----------------hccccc
Confidence            3344689999999987653   357999999999999999999998877666443322                123444


Q ss_pred             CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       418 ~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .+|...+..+..++.-|+..||.+||.+..|+-.|+++.
T Consensus       409 ~ippgis~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  409 HIPPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             cCCCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            567888899999999999999999999999999998863

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.92  E-value=1.8e-24  Score=202.26  Aligned_cols=261  Identities=14%  Similarity=0.137  Sum_probs=196.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~  253 (473)
                      -+|.++++||+|.||+++.|+   +......+|+|....+   ....++..|....+.| ..++|...|-|-.+.  -+-
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~---Nl~nne~VAIKfEPrk---S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG--~~N   99 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGK---NLYNNEPVAIKFEPRK---SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEG--KYN   99 (449)
T ss_pred             ccceeccccccCcceeeeccc---ccccCceEEEEecccc---CCcchHHHHHHHHHHHcCCCCCCceeeecccc--chh
Confidence            378999999999999999997   5555556666655433   3446788888888888 578888887444332  667


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-----CcEEEecc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-----FSAKLSGY  328 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-----~~vkl~DF  328 (473)
                      .||+|++ |-||+|++.-  -+..|+..+++.+|.|++.-++|+|+++   +|+|||||+|+||..-     ..+.|+||
T Consensus       100 iLVidLL-GPSLEDLFD~--CgR~FSvKTV~miA~Qmi~rie~vH~k~---LIYRDIKPdNFLIGrp~~k~~n~IhiiDF  173 (449)
T KOG1165|consen  100 ILVIDLL-GPSLEDLFDL--CGRRFSVKTVAMIAKQMITRIEYVHEKD---LIYRDIKPDNFLIGRPGTKDANVIHIIDF  173 (449)
T ss_pred             hhhhhhh-CcCHHHHHHH--hcCcccHHhHHHHHHHHHHHHHHHHhcc---eeecccCccceeecCCCCCCCceEEEEec
Confidence            8999998 7799888743  3567999999999999999999999999   9999999999999643     35899999


Q ss_pred             CCCcccCCC---------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          329 GCAGHIPET---------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       329 Gla~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|+.+...         ......||..||+-....+...+.+.|+-+||-|++++|.|..||.+.......+..+..  
T Consensus       174 GmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKI--  251 (449)
T KOG1165|consen  174 GMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKI--  251 (449)
T ss_pred             cchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHh--
Confidence            999866332         234568999999999999999999999999999999999999999876433322221110  


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                              ...........+..+.+.++...+...-..+-.+-|..+-+...+..+..+.
T Consensus       252 --------Ge~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvldr~  303 (449)
T KOG1165|consen  252 --------GETKRSTPIEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVLDRL  303 (449)
T ss_pred             --------ccccccCCHHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence                    0000000011123455677777777777888899999988888887766544

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.91  E-value=4.1e-24  Score=212.06  Aligned_cols=178  Identities=13%  Similarity=0.117  Sum_probs=129.1

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC----CCChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN----PSSQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      .+....++|...+.||+|+||+||+|.+....  ...+++|++...    ........|.+|+++|..++|+|++..+..
T Consensus        12 ~~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~--~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~   89 (365)
T PRK09188         12 QIPALSARFVETAVLKRDVFSTVERGYFAGDP--GTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA   89 (365)
T ss_pred             ccccccCCceEccEEeecCcEEEEEEEEcCCC--CeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence            33455678999999999999999999865321  122344443321    122345678999999999999999964322


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCC-CCCceeeCCCCcE
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-STANIQIDKDFSA  323 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDl-kp~NILl~~~~~v  323 (473)
                      +     +..||||||+++++|.. +.  ...       ...++.+++.+|.|||+++   |+|||| ||+|||++.++.+
T Consensus        90 ~-----~~~~LVmE~~~G~~L~~-~~--~~~-------~~~~~~~i~~aL~~lH~~g---IiHrDL~KP~NILv~~~~~i  151 (365)
T PRK09188         90 T-----GKDGLVRGWTEGVPLHL-AR--PHG-------DPAWFRSAHRALRDLHRAG---ITHNDLAKPQNWLMGPDGEA  151 (365)
T ss_pred             c-----CCcEEEEEccCCCCHHH-hC--ccc-------hHHHHHHHHHHHHHHHHCC---CeeCCCCCcceEEEcCCCCE
Confidence            1     35799999999999963 21  111       1467889999999999999   999999 9999999999999


Q ss_pred             EEeccCCCcccCCCC----------ccCcccccccCChhhhhcCC------CCCcCCch
Q 011995          324 KLSGYGCAGHIPETD----------ISNSSVAAANLSVETLERGL------LTPKSNVW  366 (473)
Q Consensus       324 kl~DFGla~~~~~~~----------~~~~~~t~~y~aPE~~~~~~------~s~~sDvw  366 (473)
                      ||+|||+++.+....          ..+..+++.|++||++....      .+..+|-|
T Consensus       152 kLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~dgW  210 (365)
T PRK09188        152 AVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPRERKILARKSLPSRIW  210 (365)
T ss_pred             EEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCChhhhccccccccccCcE
Confidence            999999998664322          23445677899999885432      23446666

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.91  E-value=5.5e-24  Score=191.01  Aligned_cols=260  Identities=12%  Similarity=0.058  Sum_probs=195.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC-CCcccceeeeecCCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH-PNLCKLLGFHARDGSD  251 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-pnIv~l~g~~~~~~~~  251 (473)
                      ..++|...+.||.|+||.+|.|..   ...+..+|+|+...   .....++..|..+...+++ ..|..+..|..+.  +
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~---i~~ge~VAiK~Es~---~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~--~   84 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGIS---ITSGEEVAIKLESS---KAKHPQLLYESKVYRILQGGVGIPHIRHYGTEK--D   84 (341)
T ss_pred             eccceEEEEeecCCchhheeeeee---ccCCceEEEEeecc---cCCCcchhHHHHHHHHhccCCCCchhhhhcccc--c
Confidence            357899999999999999999983   44456666776553   3345678889999999965 4555555555443  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---CcEEEecc
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---FSAKLSGY  328 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~~vkl~DF  328 (473)
                      .-.||||++ |.||++++.-  -...++..+++-++-|++.-++|+|.++   +|||||||+|+|+.-+   ..+.++||
T Consensus        85 ynvlVMdLL-GPsLEdLfnf--C~R~ftmkTvLMLaDQml~RiEyvH~r~---fiHRDIKPdNFLMGlgrh~~kl~LIDF  158 (341)
T KOG1163|consen   85 YNVLVMDLL-GPSLEDLFNF--CSRRFTMKTVLMLADQMLSRIEYVHLRN---FIHRDIKPDNFLMGLGRHCNKLYLIDF  158 (341)
T ss_pred             cceeeeecc-CccHHHHHHH--HhhhhhHHhHHHHHHHHHHHHHHHHhhc---cccccCCccceeeccccccceEEEEec
Confidence            778999998 7799998843  3456899999999999999999999999   9999999999999643   56899999


Q ss_pred             CCCcccCC---------CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          329 GCAGHIPE---------TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       329 Gla~~~~~---------~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+++.+..         ....+..||..|.+-....+-..+.+.|+-|+|.+|.++..|..||.+.......+..+..  
T Consensus       159 GLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI--  236 (341)
T KOG1163|consen  159 GLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKI--  236 (341)
T ss_pred             cchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHH--
Confidence            99976532         2234568899999999888888899999999999999999999999987654433322211  


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                              ....-...........+.++...+..|-..--++-|...-+-+.+.-+.
T Consensus       237 --------~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLf  285 (341)
T KOG1163|consen  237 --------SEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILF  285 (341)
T ss_pred             --------HHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHH
Confidence                    0000000111223445677888888998888888888877777666443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.90  E-value=2.3e-22  Score=196.50  Aligned_cols=255  Identities=25%  Similarity=0.372  Sum_probs=190.7

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh--hhHhHHHHHHHHHhCCCC-CcccceeeeecCCCCce
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHP-NLCKLLGFHARDGSDQR  253 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ei~~l~~l~Hp-nIv~l~g~~~~~~~~~~  253 (473)
                      |.....||.|+||.||++...      +.+++++........  ....+.+|+.++..+.|+ +|+++++++...  ...
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~------~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~--~~~   73 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR------KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDE--GSL   73 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec------cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecC--CEE
Confidence            566688999999999999865      333344433332222  467899999999999988 799999988544  457


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCCCc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGCAG  332 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGla~  332 (473)
                      +++++|+.++++.+++........+.......++.|++.++.|+|..+   ++|||+||+||+++..+ .++++|||++.
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~---~~hrd~kp~nil~~~~~~~~~l~dfg~~~  150 (384)
T COG0515          74 YLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAK  150 (384)
T ss_pred             EEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeecCCCCeEEEeccCcce
Confidence            999999999999977743211126889999999999999999999999   99999999999999988 79999999987


Q ss_pred             ccCCCC--------ccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCCh----HHHHhHhhhc
Q 011995          333 HIPETD--------ISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHP----KEERNLVKWS  397 (473)
Q Consensus       333 ~~~~~~--------~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~----~~~~~~~~~~  397 (473)
                      ......        .....++..|++||.+.+   ..++...|+|++|++++++++|..||.....    ......+. .
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~  229 (384)
T COG0515         151 LLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIIL-E  229 (384)
T ss_pred             ecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHH-h
Confidence            554332        355678999999999987   5788999999999999999999999876553    11111111 0


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...     .   .................+.+++..|+..+|..|.++.+....
T Consensus       230 ~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         230 LPT-----P---SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             cCC-----c---ccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            000     0   000000000012334678899999999999999998887764

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.2e-24  Score=226.24  Aligned_cols=255  Identities=18%  Similarity=0.197  Sum_probs=181.9

Q ss_pred             cCcceeecCCceEEEEEECCCCe--eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          179 SDRCISEGLSSVMYRASFGDDAS--TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ..+++|.|.+|.|+.........  ..+.+.++.+...........+..|+.+-..++|+|++..+..+.+.  ....-+
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~--~~~~~~  399 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEI--DGILQS  399 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhc--ccchhh
Confidence            45789999999777776433222  11222211001111112223367788888899999999888776654  333444


Q ss_pred             EEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          257 YERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       257 ~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      ||||+. +|..++...   ..+....+-.++.|++.|+.|||+.|   |.|||||++|+++..+|.+||+|||.+..+..
T Consensus       400 mE~~~~-Dlf~~~~~~---~~~~~~e~~c~fKqL~~Gv~y~h~~G---iahrdlK~enll~~~~g~lki~Dfg~~~vf~~  472 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMSN---GKLTPLEADCFFKQLLRGVKYLHSMG---LAHRDLKLENLLVTENGILKIIDFGAASVFRY  472 (601)
T ss_pred             hhcccH-HHHHHHhcc---cccchhhhhHHHHHHHHHHHHHHhcC---ceeccCccccEEEecCCceEEeecCcceeecc
Confidence            999999 999998432   35888899999999999999999999   99999999999999999999999999876532


Q ss_pred             C------CccCcccccccCChhhhhcCCCCC-cCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          337 T------DISNSSVAAANLSVETLERGLLTP-KSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       337 ~------~~~~~~~t~~y~aPE~~~~~~~s~-~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .      ......|+..|+|||++.+..|++ ..||||.|++++.|++|+.||......+......      ....... 
T Consensus       473 ~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~------~~~~~~~-  545 (601)
T KOG0590|consen  473 PWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTN------NYSDQRN-  545 (601)
T ss_pred             CcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhh------ccccccc-
Confidence            2      234567889999999999999986 4899999999999999999997654332211000      0000000 


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ...-........+...+.+|.++|+.||.+|.|+++|++.
T Consensus       546 --~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  546 --IFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             --cccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhC
Confidence              0000011233556778899999999999999999999863

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.85  E-value=2.3e-22  Score=203.28  Aligned_cols=229  Identities=17%  Similarity=0.200  Sum_probs=182.6

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh-hhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ-GVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +|.|.||.|+.+.--.+..+.+.++.++........ .......|..++..++ ||.+|+++..+..+  ...+++++|.
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~--~kl~l~ld~~   79 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTD--GKLYLILDFL   79 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccc--cchhHhhhhc
Confidence            789999999987644455555666666544332111 1124556888888886 99999998877766  7889999999


Q ss_pred             cCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCcc
Q 011995          261 FHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS  340 (473)
Q Consensus       261 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~  340 (473)
                      .+|+|...+.   ....+++.....+...++-+++++|..+   |+|||+|++||+++.+|.+++.|||+++..-.....
T Consensus        80 rgg~lft~l~---~~~~f~~~~~~~~~aelaLald~lh~l~---iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~  153 (612)
T KOG0603|consen   80 RGGDLFTRLS---KEVMFDELDVAFYLAELALALDHLHKLG---IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA  153 (612)
T ss_pred             ccchhhhccc---cCCchHHHHHHHHHHHHHHHHhhcchhH---HHHhcccccceeecccCccccCCchhhhHhHhhhhc
Confidence            9999988883   4557888888999999999999999999   999999999999999999999999999877544333


Q ss_pred             CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCC
Q 011995          341 NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP  420 (473)
Q Consensus       341 ~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  420 (473)
                        +||..|||||++.  ....++|.||||++++||+||..||..    +....+...                  .-.+|
T Consensus       154 --cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~Il~~------------------~~~~p  207 (612)
T KOG0603|consen  154 --CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRILKA------------------ELEMP  207 (612)
T ss_pred             --ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch----HHHHHHhhh------------------ccCCc
Confidence              8999999999998  467899999999999999999999987    222222111                  11247


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          421 LKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       421 ~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                      ...+..+.+++.+++..+|..|.-.
T Consensus       208 ~~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  208 RELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             hhhhHHHHHHHHHHHhhCHHHHhcc
Confidence            7888999999999999999999765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.85  E-value=4.6e-22  Score=210.39  Aligned_cols=245  Identities=18%  Similarity=0.214  Sum_probs=173.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChh---hHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG---VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +|...+.||++.|=.|.+|+.+.+...+     ||.......-.   ..+.+.|++ ...++|||.+++.-+-..+  ..
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVv-----KVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~--kA   95 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVV-----KVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTD--KA   95 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEE-----EEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhh--HH
Confidence            5667789999999999999876665432     22222222222   334444555 5556999999987665444  56


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|||-+|..+ +|+|.|.   ..+-+...+.+.|+.|++.||..+|..+   |+|||||.+||||+.-..+.|+||...+
T Consensus        96 AylvRqyvkh-nLyDRlS---TRPFL~~iEKkWiaFQLL~al~qcH~~g---VcHGDIKsENILiTSWNW~~LtDFAsFK  168 (1431)
T KOG1240|consen   96 AYLVRQYVKH-NLYDRLS---TRPFLVLIEKKWIAFQLLKALSQCHKLG---VCHGDIKSENILITSWNWLYLTDFASFK  168 (1431)
T ss_pred             HHHHHHHHhh-hhhhhhc---cchHHHHHHHHHHHHHHHHHHHHHHHcC---ccccccccceEEEeeechhhhhcccccC
Confidence            6788888855 9999883   3445788889999999999999999999   9999999999999999999999997654


Q ss_pred             cc--CCCCc-------cCcccccccCChhhhhcC-----------CCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          333 HI--PETDI-------SNSSVAAANLSVETLERG-----------LLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       333 ~~--~~~~~-------~~~~~t~~y~aPE~~~~~-----------~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ..  +.++.       .+...-.+|+|||.+...           ..+++.||||+||++.||++ |+++|.-.      
T Consensus       169 PtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS------  242 (1431)
T KOG1240|consen  169 PTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS------  242 (1431)
T ss_pred             CccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH------
Confidence            33  22221       122334689999998542           16789999999999999987 78888532      


Q ss_pred             hHhhhccc-ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          392 NLVKWSRP-FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       392 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      ++..+... .......+..+.|            ..+++++..|++.||++|.++++.|+.-.
T Consensus       243 QL~aYr~~~~~~~e~~Le~Ied------------~~~Rnlil~Mi~rdPs~RlSAedyL~~yr  293 (1431)
T KOG1240|consen  243 QLLAYRSGNADDPEQLLEKIED------------VSLRNLILSMIQRDPSKRLSAEDYLQKYR  293 (1431)
T ss_pred             HHHhHhccCccCHHHHHHhCcC------------ccHHHHHHHHHccCchhccCHHHHHHhhh
Confidence            11111110 0000111222222            35789999999999999999999998743

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=1.3e-20  Score=170.99  Aligned_cols=182  Identities=15%  Similarity=0.053  Sum_probs=132.6

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhH-----hHHHHHHHHHhCC-CCCcccceeeeecCCCCc
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK-----EFINDVNTLASLQ-HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~  252 (473)
                      ....|++|+||+||.+.-.+..       +....+.......+     .+.+|+++|.++. |++|++++++      +.
T Consensus         6 ~~~~l~~~~f~~v~~~~~~~~k-------~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~------~~   72 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRGGERK-------FVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW------DG   72 (218)
T ss_pred             cceeecCCCcceEEEeecCCce-------eeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE------cC
Confidence            3478999999999977532211       22233333333333     5789999999995 5889999875      24


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCC-CCCceeeCCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-STANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDl-kp~NILl~~~~~vkl~DFGla  331 (473)
                      .+++|||+.|.+|...+..          ....++.|++.+|.++|++|   |+|||| ||+|||++.++.++|+|||++
T Consensus        73 ~~lvmeyI~G~~L~~~~~~----------~~~~~~~qi~~~L~~lH~~G---IvHrDL~kp~NILv~~~g~i~LIDFG~A  139 (218)
T PRK12274         73 RHLDRSYLAGAAMYQRPPR----------GDLAYFRAARRLLQQLHRCG---VAHNDLAKEANWLVQEDGSPAVIDFQLA  139 (218)
T ss_pred             EEEEEeeecCccHHhhhhh----------hhHHHHHHHHHHHHHHHHCc---CccCCCCCcceEEEcCCCCEEEEECCCc
Confidence            6899999999998654411          11357789999999999999   999999 799999999999999999999


Q ss_pred             cccCCCCc-----c----------CcccccccCChhhhhcC-CCC-CcCCchHHHHHHHHHHcCCCCCCCCC
Q 011995          332 GHIPETDI-----S----------NSSVAAANLSVETLERG-LLT-PKSNVWSFGIVLLELLTGRKNLDSRH  386 (473)
Q Consensus       332 ~~~~~~~~-----~----------~~~~t~~y~aPE~~~~~-~~s-~~sDvwSlGvvl~elltG~~p~~~~~  386 (473)
                      ........     .          -...++.|++|+...-- ..+ .+.+.++-|+.+|.++||..+..+..
T Consensus       140 ~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        140 VRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             eecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence            85543221     0          01236778888765322 233 56788899999999999998876543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.85  E-value=6.1e-21  Score=181.86  Aligned_cols=237  Identities=19%  Similarity=0.294  Sum_probs=151.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCC----------CCccccee
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQH----------PNLCKLLG  243 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~H----------pnIv~l~g  243 (473)
                      .+..+..||.|+|+.||.++.   ..+...+++++.....  .....+++++|.-....+.+          -.++..++
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d---~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d   89 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTD---VETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLD   89 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEE---TTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SE
T ss_pred             EEEEccccccCCceEEEEEEE---ccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeE
Confidence            455668999999999999994   4455667777766554  34456777777765555432          12222222


Q ss_pred             eeecC----------CCC-----ceEEEEEeccCCChhhhhhc---C-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCc
Q 011995          244 FHARD----------GSD-----QRMLIYERLFHGSLDRLIYG---R-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQ  304 (473)
Q Consensus       244 ~~~~~----------~~~-----~~~lV~E~~~~gsL~~~l~~---~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~  304 (473)
                      .....          +..     +.+++|+-+ .++|.+++..   . .....+....++.+..|+++.+++||..|   
T Consensus        90 ~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~G---  165 (288)
T PF14531_consen   90 LLRIPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYG---  165 (288)
T ss_dssp             EEEETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             EEEEcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcc---
Confidence            22111          001     346778877 5688887632   1 11223456677788899999999999999   


Q ss_pred             eeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcC--------CCCCcCCchHHHHHHHHHH
Q 011995          305 AMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERG--------LLTPKSNVWSFGIVLLELL  376 (473)
Q Consensus       305 ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~--------~~s~~sDvwSlGvvl~ell  376 (473)
                      +||+||+|+|++++.+|.+.|+||+........... ...+..|.+||.....        .++.+.|.|+||+++|.|+
T Consensus       166 lVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~-~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lW  244 (288)
T PF14531_consen  166 LVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC-SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLW  244 (288)
T ss_dssp             EEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG-GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHH
T ss_pred             eEecccceeeEEEcCCCCEEEcChHHHeecCceeec-cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHH
Confidence            999999999999999999999999866544332222 4455789999977432        4788999999999999999


Q ss_pred             cCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 011995          377 TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER  442 (473)
Q Consensus       377 tG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~R  442 (473)
                      +|..||..........   |                  .-..+. +.++.+..||..+|+.||.+|
T Consensus       245 C~~lPf~~~~~~~~~~---~------------------~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  245 CGRLPFGLSSPEADPE---W------------------DFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HSS-STCCCGGGSTSG---G------------------GGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             HccCCCCCCCcccccc---c------------------cchhcC-CcCHHHHHHHHHHccCCcccC
Confidence            9999998653221110   0                  111234 788999999999999999987

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.84  E-value=5.7e-21  Score=176.87  Aligned_cols=174  Identities=11%  Similarity=0.054  Sum_probs=128.6

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHh------HHHHHHHHHhCCCCCcccceee
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKE------FINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      ..++|...+.||.|+||.||.....     ...+++|+.+-..  .......      +.+|+..+.++.|++|..+.++
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~~-----~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~  103 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDTD-----YGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDF  103 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEecC-----CCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEe
Confidence            4688999999999999999996432     2334455554322  1222222      5799999999999999999988


Q ss_pred             eecCC------CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC
Q 011995          245 HARDG------SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID  318 (473)
Q Consensus       245 ~~~~~------~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~  318 (473)
                      +....      ....+|||||++|.+|.++..       ++.    ....+++.+|..||..+   ++|||+||+||+++
T Consensus       104 ~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-------~~~----~~~~~i~~~l~~lH~~g---i~H~Dikp~Nili~  169 (232)
T PRK10359        104 YLLAERKTLRYAHTYIMLIEYIEGVELNDMPE-------ISE----DVKAKIKASIESLHQHG---MVSGDPHKGNFIVS  169 (232)
T ss_pred             eeecccccccccCCeEEEEEEECCccHHHhhh-------ccH----HHHHHHHHHHHHHHHcC---CccCCCChHHEEEe
Confidence            65432      135899999999999988741       222    34569999999999999   99999999999999


Q ss_pred             CCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHH
Q 011995          319 KDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELL  376 (473)
Q Consensus       319 ~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ell  376 (473)
                      .+| ++|+|||...........          ..++....+..++|+|+||+.+..+.
T Consensus       170 ~~g-i~liDfg~~~~~~e~~a~----------d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        170 KNG-LRIIDLSGKRCTAQRKAK----------DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             CCC-EEEEECCCcccccchhhH----------HHHHHHhHhcccccccceeEeehHHH
Confidence            988 999999987655322111          11333444668999999999887654

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=7.4e-21  Score=181.95  Aligned_cols=196  Identities=17%  Similarity=0.257  Sum_probs=141.0

Q ss_pred             CCCCcccceeeeecC-------------------------CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHH
Q 011995          234 QHPNLCKLLGFHARD-------------------------GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIAL  288 (473)
Q Consensus       234 ~HpnIv~l~g~~~~~-------------------------~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~  288 (473)
                      .|||||+++++|.+.                         ....+|+||..++. +|..++..+    ..+.....-++.
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~----~~s~r~~~~~la  348 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTR----HRSYRTGRVILA  348 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcC----CCchHHHHHHHH
Confidence            599999999887543                         12468999988865 899998443    466778888999


Q ss_pred             HHHHHHHHhhhcCCCceeecCCCCCceee--CCC--CcEEEeccCCCcccCC--------CCccCcccccccCChhhhhc
Q 011995          289 CAAQGLTFLHEEGPFQAMYNEFSTANIQI--DKD--FSAKLSGYGCAGHIPE--------TDISNSSVAAANLSVETLER  356 (473)
Q Consensus       289 ~i~~~L~yLH~~~~~~ivHrDlkp~NILl--~~~--~~vkl~DFGla~~~~~--------~~~~~~~~t~~y~aPE~~~~  356 (473)
                      |++.|+.|||.++   |.|||+|.+||||  |.|  -.+.|+|||++---..        .......|....||||+...
T Consensus       349 QlLEav~hL~~hg---vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta  425 (598)
T KOG4158|consen  349 QLLEAVTHLHKHG---VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATA  425 (598)
T ss_pred             HHHHHHHHHHHcc---chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhc
Confidence            9999999999999   9999999999999  344  3578999998632211        11222345567899999854


Q ss_pred             CC------CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHH
Q 011995          357 GL------LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADI  430 (473)
Q Consensus       357 ~~------~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l  430 (473)
                      -.      --.++|.|+.|.+.||+++...||.+....... .-           ....-.-|.    .+..++..++++
T Consensus       426 ~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~-~r-----------~Yqe~qLPa----lp~~vpp~~rql  489 (598)
T KOG4158|consen  426 VPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLD-TR-----------TYQESQLPA----LPSRVPPVARQL  489 (598)
T ss_pred             CCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheec-hh-----------hhhhhhCCC----CcccCChHHHHH
Confidence            22      135899999999999999999999763322110 00           011111122    255667889999


Q ss_pred             HHHhcccCCCCCCCHHHHHHHHH
Q 011995          431 ALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       431 i~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      +...|+.||++|++..=....|.
T Consensus       490 V~~lL~r~pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  490 VFDLLKRDPSKRVSPNIAANVLN  512 (598)
T ss_pred             HHHHhcCCccccCCccHHHhHHH
Confidence            99999999999998765544443

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.83  E-value=2.7e-20  Score=169.83  Aligned_cols=140  Identities=12%  Similarity=0.086  Sum_probs=104.4

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-Chh-------h-----------------HhHHHHHHHHHhCC
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-SQG-------V-----------------KEFINDVNTLASLQ  234 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~-----------------~~~~~Ei~~l~~l~  234 (473)
                      ...||+|+||.||+|...    .++.+++|+.+.... ...       .                 .....|++++.++.
T Consensus         2 ~~~ig~G~~~~Vy~a~~~----~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   77 (190)
T cd05147           2 NGCISTGKEANVYHATTA----NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLV   77 (190)
T ss_pred             CCccccccceEEEEEECC----CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999854    345566666654311 000       1                 12235999999998


Q ss_pred             CCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHh-hhcCCCceeecCCCCC
Q 011995          235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL-HEEGPFQAMYNEFSTA  313 (473)
Q Consensus       235 HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yL-H~~~~~~ivHrDlkp~  313 (473)
                      ++++.....+..    ...+|||||++++++...+.   ....+++..+..++.|++.+|.|| |+.+   |+||||||+
T Consensus        78 ~~~v~~p~~~~~----~~~~iVmE~i~g~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~l~H~~g---iiHrDlkP~  147 (190)
T cd05147          78 TAGIPCPEPILL----KSHVLVMEFIGDDGWAAPRL---KDAPLSESKARELYLQVIQIMRILYQDCR---LVHADLSEY  147 (190)
T ss_pred             HCCCCCCcEEEe----cCCEEEEEEeCCCCCcchhh---hcCCCCHHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHH
Confidence            887754433322    22389999998887765432   234688999999999999999999 6888   999999999


Q ss_pred             ceeeCCCCcEEEeccCCCccc
Q 011995          314 NIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~~~  334 (473)
                      |||++ ++.++|+|||++...
T Consensus       148 NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         148 NLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HEEEE-CCcEEEEEccccccC
Confidence            99998 478999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=8.9e-22  Score=195.47  Aligned_cols=170  Identities=16%  Similarity=0.223  Sum_probs=129.8

Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ++||.|++|...+|.+||.++......++...+.++.|++.|+.|   ++   .+|+|+||.||+...+..+||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~---~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KG---LIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---cc---chhhhccccccccccchhhhhhhhhhe
Confidence            378899999999999999876666778899999999999999999   77   999999999999999999999999998


Q ss_pred             cccCCCC--------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccc
Q 011995          332 GHIPETD--------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       332 ~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      .......        .+...+|.+||+||.+.+..|+.++|||+||++|+||+. -...+.-..                
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~----------------  467 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIA----------------  467 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHH----------------
Confidence            7664332        355688999999999999999999999999999999997 222221100                


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                         .+..+-+..+.+.+..+. ++-..|+.+++...|.+||++.+
T Consensus       468 ---t~~d~r~g~ip~~~~~d~-p~e~~ll~~lls~~p~~RP~~~~  508 (516)
T KOG1033|consen  468 ---TLTDIRDGIIPPEFLQDY-PEEYTLLQQLLSPSPEERPSAIE  508 (516)
T ss_pred             ---hhhhhhcCCCChHHhhcC-cHHHHHHHHhcCCCcccCchHHH
Confidence               011111111111111111 23358999999999999994443

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.82  E-value=6.9e-20  Score=185.32  Aligned_cols=217  Identities=23%  Similarity=0.338  Sum_probs=165.8

Q ss_pred             HHhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecC
Q 011995          230 LASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNE  309 (473)
Q Consensus       230 l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrD  309 (473)
                      |+.+.|.|+.+++|.+.+.  ...++|.+||.-|+|.|.+..  ....++|.....++++|+.||+|||..-  -..|+.
T Consensus         1 l~~l~h~n~~~f~g~~~~~--~~~~~i~~~c~rGsl~D~i~~--~~~~~d~~F~~s~~rdi~~Gl~ylh~s~--i~~hg~   74 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDG--PEMIVIWEYCSRGSLLDILSN--EDIKLDYFFILSFIRDISKGLAYLHNSP--IGYHGA   74 (484)
T ss_pred             CcccchhhhhhheeeEecC--CceEEEEeeecCccHHhHHhc--cccCccHHHHHHHHHHHHHHHHHHhcCc--ceeeee
Confidence            4568999999999999887  789999999999999999964  4567999999999999999999999876  239999


Q ss_pred             CCCCceeeCCCCcEEEeccCCCcccCCC----CccCcccccccCChhhhhcCC-------CCCcCCchHHHHHHHHHHcC
Q 011995          310 FSTANIQIDKDFSAKLSGYGCAGHIPET----DISNSSVAAANLSVETLERGL-------LTPKSNVWSFGIVLLELLTG  378 (473)
Q Consensus       310 lkp~NILl~~~~~vkl~DFGla~~~~~~----~~~~~~~t~~y~aPE~~~~~~-------~s~~sDvwSlGvvl~elltG  378 (473)
                      ++..|+++|....+||+|||+.......    ......-..-|.|||.+....       .+.+.||||||++++|+++.
T Consensus        75 l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r  154 (484)
T KOG1023|consen   75 LKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFR  154 (484)
T ss_pred             eccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhc
Confidence            9999999999999999999998766431    111122346789999997642       46779999999999999999


Q ss_pred             CCCCCCCChHHH-HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          379 RKNLDSRHPKEE-RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       379 ~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      ..||........ .+++.+...    +  ......|.+..  .....+++..++..||..+|..||++.+|-..++.+..
T Consensus       155 ~~~~~~~~~~~~~~eii~~~~~----~--~~~~~rP~i~~--~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~  226 (484)
T KOG1023|consen  155 SGPFDLRNLVEDPDEIILRVKK----G--GSNPFRPSIEL--LNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINK  226 (484)
T ss_pred             cCccccccccCChHHHHHHHHh----c--CCCCcCcchhh--hhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcc
Confidence            999987443222 223322111    0  00111111110  01344578999999999999999999999999998887


Q ss_pred             ccC
Q 011995          458 RKS  460 (473)
Q Consensus       458 ~~~  460 (473)
                      ...
T Consensus       227 ~~~  229 (484)
T KOG1023|consen  227 GGS  229 (484)
T ss_pred             ccc
Confidence            654

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.81  E-value=3.1e-19  Score=163.17  Aligned_cols=142  Identities=14%  Similarity=0.147  Sum_probs=107.0

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC--------------------hh-----hHhHHHHHHHHHhCC
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--------------------QG-----VKEFINDVNTLASLQ  234 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~Ei~~l~~l~  234 (473)
                      .+.||+|+||.||+|...    .+..+++|+.+.....                    ..     ...+.+|.+.+.++.
T Consensus         2 ~~~ig~G~~~~Vy~a~~~----~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   77 (190)
T cd05145           2 NGCISTGKEANVYHARTG----DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLY   77 (190)
T ss_pred             CceeecCCCcEEEEEEcC----CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999854    3455566665543210                    00     122357899999999


Q ss_pred             CCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCC
Q 011995          235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTA  313 (473)
Q Consensus       235 HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~  313 (473)
                      |+++.....+...    ..+|||||++++++...+.   ....++......++.|++.+|.+||+ .+   |+||||||+
T Consensus        78 ~~~i~~p~~~~~~----~~~lVmE~~~g~~~~~~~l---~~~~~~~~~~~~i~~~l~~~l~~lH~~~g---ivHrDlkP~  147 (190)
T cd05145          78 EAGVPVPEPILLK----KNVLVMEFIGDDGSPAPRL---KDVPLEEEEAEELYEQVVEQMRRLYQEAG---LVHGDLSEY  147 (190)
T ss_pred             hCCCCCceEEEec----CCEEEEEEecCCCchhhhh---hhccCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCChh
Confidence            9988655544332    2489999998886544321   12357788999999999999999999 88   999999999


Q ss_pred             ceeeCCCCcEEEeccCCCcccCC
Q 011995          314 NIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~~~~~  336 (473)
                      |||++ ++.++|+|||++.....
T Consensus       148 NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         148 NILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             hEEEE-CCCEEEEEcccceecCC
Confidence            99999 88999999999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10345 hypothetical protein; Provisional

Probab=99.79  E-value=1.1e-18  Score=160.98  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-----CCCCcccceeeeecCCC-C
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-----QHPNLCKLLGFHARDGS-D  251 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-----~HpnIv~l~g~~~~~~~-~  251 (473)
                      .....||+|+||.||.  +.++.   .+ ++|+..... ....+.+.+|+.+++.+     .||||++++|++.++.+ .
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~---~k-~IKv~~~~~-~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g   77 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDA---QR-CIKIVYHRG-DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTG   77 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCc---Ce-EEEEEeccc-cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCe
Confidence            4458899999999995  33221   12 355555432 23456799999999999     57999999999987632 2


Q ss_pred             c-eEEEEEe--ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHH-HHhhhcCCCceeecCCCCCceeeCC----CCcE
Q 011995          252 Q-RMLIYER--LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGL-TFLHEEGPFQAMYNEFSTANIQIDK----DFSA  323 (473)
Q Consensus       252 ~-~~lV~E~--~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L-~yLH~~~~~~ivHrDlkp~NILl~~----~~~v  323 (473)
                      . +.+|+||  +.+|+|.+++.+.    .+++.  ..++.+++.++ +|||+++   ||||||||+|||++.    ++.+
T Consensus        78 ~v~~~I~e~~G~~~~tL~~~l~~~----~~~e~--~~~~~~~L~~l~~yLh~~~---IvhrDlKp~NILl~~~~~~~~~~  148 (210)
T PRK10345         78 YVYDVIADFDGKPSITLTEFAEQC----RYEED--VAQLRQLLKKLKRYLLDNR---IVTMELKPQNILCQRISESEVIP  148 (210)
T ss_pred             EEEEEEecCCCCcchhHHHHHHcc----cccHh--HHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEeccCCCCCcE
Confidence            3 3378999  5579999999431    35555  35678888888 9999999   999999999999974    3479


Q ss_pred             EEeccCCC
Q 011995          324 KLSGYGCA  331 (473)
Q Consensus       324 kl~DFGla  331 (473)
                      +|+||+.+
T Consensus       149 ~LiDg~G~  156 (210)
T PRK10345        149 VVCDNIGE  156 (210)
T ss_pred             EEEECCCC
Confidence            99995433

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=7.4e-19  Score=189.51  Aligned_cols=253  Identities=16%  Similarity=0.163  Sum_probs=175.2

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC---CCCcccceeee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ---HPNLCKLLGFH  245 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~  245 (473)
                      +++-....|.+.+.||+|+||.||+|...+    ++.+++|+.+-..  .+.  |.-=.+++.+|+   -+.|..+...+
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~----~~~~alK~e~P~~--~WE--fYI~~q~~~RLk~~~~~~~~~~~~a~  763 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSN----GKLVALKVEKPPN--PWE--FYICLQVMERLKPQMLPSIMHISSAH  763 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCC----CcEEEEEeecCCC--cee--eeehHHHHHhhchhhhcchHHHHHHH
Confidence            344445678899999999999999998554    5666676654321  121  111122333333   22344444443


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-------
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-------  318 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-------  318 (473)
                      ...  +.-+||+||.+.|+|.+++.   ....++|..++.+..|++..+++||..+   |||+||||+|+||.       
T Consensus       764 ~~~--~~S~lv~ey~~~Gtlld~~N---~~~~m~e~lv~~~~~qml~ive~lH~~~---IIHgDiKPDNfll~~~~~~~~  835 (974)
T KOG1166|consen  764 VFQ--NASVLVSEYSPYGTLLDLIN---TNKVMDEYLVMFFSCQMLRIVEHLHAMG---IIHGDIKPDNFLLRREICADS  835 (974)
T ss_pred             ccC--CcceeeeeccccccHHHhhc---cCCCCCchhhhHHHHHHHHHHHHHHhcc---eecccCCcceeEeecccCCCC
Confidence            333  56789999999999999994   5567999999999999999999999999   99999999999993       


Q ss_pred             CCCcEEEeccCCCccc---CCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh
Q 011995          319 KDFSAKLSGYGCAGHI---PET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV  394 (473)
Q Consensus       319 ~~~~vkl~DFGla~~~---~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~  394 (473)
                      ....++|+|||.+-.+   ... .....+.|-.+-.+|...|..|++..|.|+|+-+++.||.|+.-       +     
T Consensus       836 ~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~-------q-----  903 (974)
T KOG1166|consen  836 DSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM-------E-----  903 (974)
T ss_pred             cccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH-------H-----
Confidence            2345899999988543   222 44556778889999999999999999999999999999998641       0     


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHH-HHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAART-VADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .|     ....+   .++..    ++.....+ ..+|+..+|..|-..=|...+|...|++...++..
T Consensus       904 ~~-----~g~~~---~~~~~----~~Ry~~~~~W~~~F~~lLN~~~~~~p~l~~lr~~~~~~~~~~~~  959 (974)
T KOG1166|consen  904 VK-----NGSSW---MVKTN----FPRYWKRDMWNKFFDLLLNPDCDTLPNLQELRTELEEVLAEHFT  959 (974)
T ss_pred             hc-----CCcce---ecccc----chhhhhHHHHHHHHHHHhCcCcccchhHHHHHHHHHHHHHHHHH
Confidence            00     00000   01111    12222222 33566777775555557888888888877655443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.77  E-value=4.1e-18  Score=158.32  Aligned_cols=135  Identities=12%  Similarity=0.145  Sum_probs=106.3

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--C-----hhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--S-----QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +.||+|++|.||+|.+.+...     .+|+......  .     .....+.+|++++..+.|++|.....++...  +..
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~-----~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~--~~~   74 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKA-----VIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDP--ENF   74 (211)
T ss_pred             cccccCceEEEEEEeeCCCce-----EEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeC--CCC
Confidence            579999999999998744332     2333222111  0     1124578899999999999988777676554  677


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||++|++|.+++...      .+ .+..++.+++.+|.+||..+   ++|+|++|.|||++ ++.++|+|||++..
T Consensus        75 ~lv~e~~~G~~L~~~~~~~------~~-~~~~i~~~i~~~l~~lH~~~---i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         75 IIVMEYIEGEPLKDLINSN------GM-EELELSREIGRLVGKLHSAG---IIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEEEEEeCCcCHHHHHHhc------cH-HHHHHHHHHHHHHHHHHhCC---cccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            8999999999999998432      12 78899999999999999999   99999999999999 78899999998764

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.75  E-value=3.5e-18  Score=180.63  Aligned_cols=147  Identities=11%  Similarity=0.136  Sum_probs=113.6

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      ......|...+.||+|+||+||+|.+.+.....+....+..+...  .......+.+|++++..++|++++....++...
T Consensus       329 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~  408 (535)
T PRK09605        329 EEVKRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDP  408 (535)
T ss_pred             cccccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeC
Confidence            334455667799999999999999876654433322211111111  112235688999999999999999877776654


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                        ...++||||+++++|.+++.           ....++.+++.+|.|||+.+   ++||||||+|||+ .++.++|+||
T Consensus       409 --~~~~lv~E~~~g~~L~~~l~-----------~~~~~~~~i~~~L~~lH~~g---iiHrDlkp~NILl-~~~~~~liDF  471 (535)
T PRK09605        409 --EEKTIVMEYIGGKDLKDVLE-----------GNPELVRKVGEIVAKLHKAG---IVHGDLTTSNFIV-RDDRLYLIDF  471 (535)
T ss_pred             --CCCEEEEEecCCCcHHHHHH-----------HHHHHHHHHHHHHHHHHhCC---CccCCCChHHEEE-ECCcEEEEeC
Confidence              56789999999999999883           45789999999999999999   9999999999999 5778999999


Q ss_pred             CCCccc
Q 011995          329 GCAGHI  334 (473)
Q Consensus       329 Gla~~~  334 (473)
                      |+++..
T Consensus       472 Gla~~~  477 (535)
T PRK09605        472 GLGKYS  477 (535)
T ss_pred             cccccC
Confidence            998753

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.74  E-value=2.2e-18  Score=182.67  Aligned_cols=137  Identities=19%  Similarity=0.222  Sum_probs=108.0

Q ss_pred             HHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCC--------C---------CccCcccccccCChhh
Q 011995          291 AQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE--------T---------DISNSSVAAANLSVET  353 (473)
Q Consensus       291 ~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~--------~---------~~~~~~~t~~y~aPE~  353 (473)
                      +.+++|||+.+   |+|||+||+|.||+.-|.+|+.|||+++....        .         .....++|+.|+|||+
T Consensus       153 vla~Eylh~yg---ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeV  229 (1205)
T KOG0606|consen  153 VLAVEYLHSYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEV  229 (1205)
T ss_pred             hHHhHhhccCC---eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhh
Confidence            67899999999   99999999999999999999999999864311        0         1235588999999999


Q ss_pred             hhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHH
Q 011995          354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALR  433 (473)
Q Consensus       354 ~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~  433 (473)
                      +....|+..+|+|++|+|+||.+-|..||.+..+.+.+..+-      .++.....-         ......++++++.+
T Consensus       230 ilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~vi------sd~i~wpE~---------dea~p~Ea~dli~~  294 (1205)
T KOG0606|consen  230 ILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVI------SDDIEWPEE---------DEALPPEAQDLIEQ  294 (1205)
T ss_pred             hhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhh------hhhcccccc---------CcCCCHHHHHHHHH
Confidence            999999999999999999999999999999987766543221      111000000         12334789999999


Q ss_pred             hcccCCCCCCCH
Q 011995          434 CLQKEPSERPTM  445 (473)
Q Consensus       434 cl~~dP~~RPt~  445 (473)
                      +|+.+|..|.-.
T Consensus       295 LL~qnp~~Rlgt  306 (1205)
T KOG0606|consen  295 LLRQNPLCRLGT  306 (1205)
T ss_pred             HHHhChHhhccc
Confidence            999999999643

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.72  E-value=3.1e-17  Score=150.95  Aligned_cols=131  Identities=15%  Similarity=0.184  Sum_probs=99.8

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CC-----hhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SS-----QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .||+|+||.||+|.+.+..     +.+|+.....  ..     ....++.+|++++..++|+++.....++...  +..+
T Consensus         1 ~ig~G~~~~vy~~~~~~~~-----~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~--~~~~   73 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLK-----AVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDP--DNKT   73 (199)
T ss_pred             CCCCCceEEEEEeecCCcc-----EEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCE
Confidence            4899999999999854422     2333322211  11     1135678899999999988766555454444  5678


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||++|++|.+++....       .   .++.+++.+|.+||+.+   ++|+|++|.||+++ ++.++++|||++..
T Consensus        74 lv~e~~~g~~l~~~~~~~~-------~---~~~~~i~~~l~~lH~~g---i~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        74 IVMEYIEGKPLKDVIEEGN-------D---ELLREIGRLVGKLHKAG---IVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EEEEEECCccHHHHHhhcH-------H---HHHHHHHHHHHHHHHCC---eecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            9999999999998873311       0   78999999999999999   99999999999999 88999999998865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00090 RIO RIO-like kinase

Probab=99.71  E-value=7e-17  Score=152.44  Aligned_cols=145  Identities=15%  Similarity=0.122  Sum_probs=105.9

Q ss_pred             ccccCcceeecCCceEEEEE-ECCCCeeeeEEEEEEEecCCCC-------------------h----hhHhHHHHHHHHH
Q 011995          176 NFFSDRCISEGLSSVMYRAS-FGDDASTSKKFEATVTRLNPSS-------------------Q----GVKEFINDVNTLA  231 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~----~~~~~~~Ei~~l~  231 (473)
                      -|.+.+.||+|+||.||+|. ...   .+..+++|+.+.....                   .    ....+.+|+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~---~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~  105 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDG---SGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQ  105 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCC---CCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            47888999999999999997 221   2344556655533110                   0    1123568999999


Q ss_pred             hCCCCC--cccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecC
Q 011995          232 SLQHPN--LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNE  309 (473)
Q Consensus       232 ~l~Hpn--Iv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrD  309 (473)
                      ++.+.+  +.+++++      ...+|||||+++++|...+..   ...+.......++.|++.+|.+||..+  .|+|||
T Consensus       106 ~L~~~~i~~p~~~~~------~~~~lV~E~~~g~~L~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~g--~iiH~D  174 (237)
T smart00090      106 RLYEAGVPVPKPIAW------RRNVLVMEFIGGDGLPAPRLK---DVEPEEEEEFELYDDILEEMRKLYKEG--ELVHGD  174 (237)
T ss_pred             HHHhcCCCCCeeeEe------cCceEEEEEecCCcccccccc---cCCcchHHHHHHHHHHHHHHHHHHhcC--CEEeCC
Confidence            997633  3334332      234899999999888765422   234566677899999999999999997  499999


Q ss_pred             CCCCceeeCCCCcEEEeccCCCcccC
Q 011995          310 FSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       310 lkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      |||+||+++ ++.++|+|||.+....
T Consensus       175 ikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      175 LSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             CChhhEEEE-CCCEEEEEChhhhccC
Confidence            999999999 8899999999987543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.69  E-value=2e-16  Score=145.56  Aligned_cols=148  Identities=15%  Similarity=0.079  Sum_probs=108.8

Q ss_pred             HHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC---------------------hhhHhHHH
Q 011995          167 LDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS---------------------QGVKEFIN  225 (473)
Q Consensus       167 ~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  225 (473)
                      +.++......|...+.||+|+||.||++...+    +..+++|+.+.....                     .....+..
T Consensus         7 ~~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (198)
T cd05144           7 LHTLVKRGVVESLGNQIGVGKESDVYLALDPD----GNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQK   82 (198)
T ss_pred             HHHHHHcCchhhcCCccccCcceEEEEEEcCC----CCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHH
Confidence            34555554458888999999999999998642    344556654432100                     01123677


Q ss_pred             HHHHHHhCCCCC--cccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCC
Q 011995          226 DVNTLASLQHPN--LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPF  303 (473)
Q Consensus       226 Ei~~l~~l~Hpn--Iv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~  303 (473)
                      |+.++..+.|.+  +...++.      ...++||||+++++|..+...         .....++.+++.++.++|..+  
T Consensus        83 E~~~l~~l~~~~i~v~~~~~~------~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh~~g--  145 (198)
T cd05144          83 EFAALKALYEEGFPVPKPIDW------NRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAYKHG--  145 (198)
T ss_pred             HHHHHHHHHHcCCCCCceeec------CCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHHHCC--
Confidence            899999998874  3444331      345899999999998765420         235678899999999999998  


Q ss_pred             ceeecCCCCCceeeCCCCcEEEeccCCCcccCC
Q 011995          304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       304 ~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~  336 (473)
                       |+|+||||+||+++.++.++|+|||++.....
T Consensus       146 -i~H~Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         146 -IIHGDLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             -CCcCCCCcccEEEcCCCcEEEEECCccccCCC
Confidence             99999999999999999999999999865543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.63  E-value=3.5e-15  Score=141.14  Aligned_cols=143  Identities=13%  Similarity=0.097  Sum_probs=102.1

Q ss_pred             ccee-ecCCceEEEEEECCCCeeeeEEEEE-----EEecC--CCChhhHhHHHHHHHHHhCCCCCc--ccceeeeecCCC
Q 011995          181 RCIS-EGLSSVMYRASFGDDASTSKKFEAT-----VTRLN--PSSQGVKEFINDVNTLASLQHPNL--CKLLGFHARDGS  250 (473)
Q Consensus       181 ~~lG-~G~~g~Vy~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnI--v~l~g~~~~~~~  250 (473)
                      ..|| .||.|+||.+...+...+.+.+...     +.+..  ........+.+|++++..+.|++|  +..+++......
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~  116 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHG  116 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecC
Confidence            6687 8999999999876544333333210     10100  011234567899999999998875  667766544321


Q ss_pred             C--ceEEEEEeccC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEec
Q 011995          251 D--QRMLIYERLFH-GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       251 ~--~~~lV~E~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                      .  ..++||||+++ .+|.+++..    ..++..    .+.+|+.+|.+||+.|   |+|+||||.|||++.++.++|+|
T Consensus       117 ~~~~~~lV~e~l~G~~~L~~~l~~----~~l~~~----~~~~i~~~l~~lH~~G---I~HrDlkp~NILv~~~~~v~LID  185 (239)
T PRK01723        117 LFYRADILIERIEGARDLVALLQE----APLSEE----QWQAIGQLIARFHDAG---VYHADLNAHNILLDPDGKFWLID  185 (239)
T ss_pred             cceeeeEEEEecCCCCCHHHHHhc----CCCCHH----HHHHHHHHHHHHHHCC---CCCCCCCchhEEEcCCCCEEEEE
Confidence            1  23599999997 689888743    235543    3578999999999999   99999999999999999999999


Q ss_pred             cCCCccc
Q 011995          328 YGCAGHI  334 (473)
Q Consensus       328 FGla~~~  334 (473)
                      ||.+...
T Consensus       186 fg~~~~~  192 (239)
T PRK01723        186 FDRGELR  192 (239)
T ss_pred             CCCcccC
Confidence            9988654

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.61  E-value=8.2e-15  Score=127.49  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=105.4

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC--CCcccceeeeecCCCCceEEEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH--PNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H--pnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      .+.||+|.++.||++...+     +.+.+|...  .... ...+.+|+.++..++|  .++++++++....  +..+++|
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-----~~~~iK~~~--~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~--~~~~~v~   72 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-----EDYVLKINP--SREK-GADREREVAILQLLARKGLPVPKVLASGESD--GWSYLLM   72 (155)
T ss_pred             ceecccccccceEEEEecC-----CeEEEEecC--CCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CccEEEE
Confidence            4789999999999998644     223333332  2222 4678899999999976  5888888776544  6789999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ||+.++.+..+          +......++.+++.+|++||......++|+|++|.|||++..+.++++|||.+..
T Consensus        73 e~~~g~~~~~~----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          73 EWIEGETLDEV----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             EecCCeecccC----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            99988777543          4567788899999999999986433499999999999999989999999998764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=1.8e-16  Score=167.69  Aligned_cols=252  Identities=20%  Similarity=0.263  Sum_probs=182.2

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCc
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~  252 (473)
                      |...+-||+|.|+.|-......+..  .  .++.+....   +......+..|..+-..+. |.|++.+++.....  +.
T Consensus        22 ~~~~~~ig~gs~~~~~~~~~~~~~~--~--~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~--~~   95 (601)
T KOG0590|consen   22 YKLSRSIGKGSFSSSALASNSRDPE--S--SSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSP--RS   95 (601)
T ss_pred             ccccccccccccchhhhhhhcCCCc--c--eeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCC--cc
Confidence            4444679999999998876433322  1  233333322   2333455566888877786 99999999987655  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhh-hcCCCceeecCCCCCceeeCCCC-cEEEeccCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH-EEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGC  330 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH-~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGl  330 (473)
                      .+++++|..++++.+-+.. .+....+......++.|+..++.|+| ..+   +.|+||||+|.+++..+ ..+++|||+
T Consensus        96 ~~~~~~~s~g~~~f~~i~~-~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~---~~h~~ikP~n~~l~~s~~~l~~~df~~  171 (601)
T KOG0590|consen   96 YLLSLSYSDGGSLFSKISH-PDSTGTSSSSASRYLPQLNSGLSYLHPENG---VTHRDIKPSNSLLDESGSALKIADFGL  171 (601)
T ss_pred             cccccCccccccccccccc-CCccCCCCcchhhhhhhhccCccccCcccc---cccCCCCCccchhccCCCcccCCCchh
Confidence            8999999999999888731 12224556677889999999999999 887   99999999999999999 999999999


Q ss_pred             CcccCC-CC----ccCccc-ccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          331 AGHIPE-TD----ISNSSV-AAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       331 a~~~~~-~~----~~~~~~-t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |..+.. ..    ....++ ++.|+|||...+. ...+..|+||.|+++.-+++|..||......... ...|.    ..
T Consensus       172 At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~-~~~~~----~~  246 (601)
T KOG0590|consen  172 ATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGR-YSSWK----SN  246 (601)
T ss_pred             hccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccccccc-ceeec----cc
Confidence            987755 22    123466 8999999999874 4578899999999999999999999765443311 11111    00


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .        ................+++.+++..+|..|.+.+++...
T Consensus       247 ~--------~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d  286 (601)
T KOG0590|consen  247 K--------GRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKLD  286 (601)
T ss_pred             c--------cccccCccccCChhhhhcccccccCCchhcccccccccc
Confidence            0        000011133455677889999999999999998877543

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.57  E-value=9.7e-15  Score=132.90  Aligned_cols=138  Identities=15%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--ChhhHh---------------------HHHHHHHHHhCCCC
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--SQGVKE---------------------FINDVNTLASLQHP  236 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------------~~~Ei~~l~~l~Hp  236 (473)
                      .+.||+|+||.||+|...+    ...+++|+.+....  ......                     ...|...+..+.+.
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~----~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~   77 (187)
T cd05119           2 GGPIGTGKEADVYLALDGD----GEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEA   77 (187)
T ss_pred             CcccccccceeEEEEECCC----CCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHc
Confidence            4789999999999998652    23455655443211  111111                     13566666666443


Q ss_pred             C--cccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCC
Q 011995          237 N--LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTA  313 (473)
Q Consensus       237 n--Iv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~  313 (473)
                      .  +.+++++      ...++||||++++.+........   ... .....++.+++.++.++|. .+   |+|+||||+
T Consensus        78 ~~~~~~~~~~------~~~~lv~e~~~g~~~~~~~l~~~---~~~-~~~~~~~~~~~~~l~~lh~~~~---ivH~Dl~p~  144 (187)
T cd05119          78 GVPVPKPIDL------NRHVLVMEFIGGDGIPAPRLKDV---RLL-EDPEELYDQILELMRKLYREAG---LVHGDLSEY  144 (187)
T ss_pred             CCCCCceEec------CCCEEEEEEeCCCCccChhhhhh---hhc-ccHHHHHHHHHHHHHHHhhccC---cCcCCCChh
Confidence            3  3344332      24589999999855432111100   011 5678899999999999999 88   999999999


Q ss_pred             ceeeCCCCcEEEeccCCCcccC
Q 011995          314 NIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||+++ ++.++|+|||.+....
T Consensus       145 Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         145 NILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             hEEEE-CCcEEEEECccccccc
Confidence            99999 8999999999987553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=3.7e-13  Score=136.82  Aligned_cols=248  Identities=17%  Similarity=0.195  Sum_probs=176.6

Q ss_pred             ccccCcceee--cCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          176 NFFSDRCISE--GLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       176 ~f~~~~~lG~--G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      .|.....+|.  |.+|.||.+.... ......++++.-.... .......=.+|+.....+ .|+|.++.+..+...  +
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~-~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~--~  191 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTN-SESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGS--G  191 (524)
T ss_pred             hcccccccccCCCCCceeecccCCc-ccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccC--C
Confidence            4666688999  9999999997522 3344555555433332 222233345677777777 599999977776554  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHH----HHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEe
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQ----GLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLS  326 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~----~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~  326 (473)
                      ..++-+|++ +.+|..+.+..  ...++......+..+..+    ||.++|..+   ++|-|+||.||++..+ ...++.
T Consensus       192 ~lfiqtE~~-~~sl~~~~~~~--~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~---~~~~~~kp~~i~~~~~~~s~~~~  265 (524)
T KOG0601|consen  192 ILFIQTELC-GESLQSYCHTP--CNFLPDNLLWNSLRDWLSRDVTALSHLHSNN---IVHDDLKPANIFTTSDWTSCKLT  265 (524)
T ss_pred             cceeeeccc-cchhHHhhhcc--cccCCchhhhhHHhhhhhcccccccccCCCc---ccccccchhheecccccceeecC
Confidence            888889988 46888887542  334667777778888888    999999999   9999999999999999 889999


Q ss_pred             ccCCCcccCCCCccCc-------ccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          327 GYGCAGHIPETDISNS-------SVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       327 DFGla~~~~~~~~~~~-------~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |||+...+........       -+...|++||..+ +.++..+|+|++|.++++..+|.........      ..|.. 
T Consensus       266 df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~------~~W~~-  337 (524)
T KOG0601|consen  266 DFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHLPSVGKN------SSWSQ-  337 (524)
T ss_pred             CcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcccccCCCC------CCccc-
Confidence            9999887765543222       3456899999874 4689999999999999999998776543311      11211 


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         ..       ...+...|....+.++...+..+++.++-.|++++.++.
T Consensus       338 ---~r-------~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  338 ---LR-------QGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             ---cc-------cccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence               00       011222334445566677999999999999999887653

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=6.9e-14  Score=131.67  Aligned_cols=204  Identities=18%  Similarity=0.228  Sum_probs=141.7

Q ss_pred             HHHHHhCCCCCcccceeeeecCC---CCceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 011995          227 VNTLASLQHPNLCKLLGFHARDG---SDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGP  302 (473)
Q Consensus       227 i~~l~~l~HpnIv~l~g~~~~~~---~~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~  302 (473)
                      +.-|-.+-|-|||+++.|+.+..   .....++.|||..|+|..+|.+.. ....+....-.+|+.||+.||.|||+-.|
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~P  197 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDP  197 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCC
Confidence            44555667999999999886532   245788999999999999996532 34567888889999999999999999875


Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcccCC------CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHH
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE------TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELL  376 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~------~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ell  376 (473)
                       +|+|+++..+.|++..+|-+||.----......      .......+-++|.+||.-.....+.++|||+||...+||.
T Consensus       198 -piihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlema  276 (458)
T KOG1266|consen  198 -PIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMA  276 (458)
T ss_pred             -ccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHH
Confidence             599999999999999999999853211111000      0111223457899999877777788999999999999998


Q ss_pred             cCCCCCCCCChHHH-HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          377 TGRKNLDSRHPKEE-RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       377 tG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                      -+..--........ ...+..         .+..+-+            ..-++++..|++-.|..||+|++++-..
T Consensus       277 ilEiq~tnseS~~~~ee~ia~---------~i~~len------------~lqr~~i~kcl~~eP~~rp~ar~llfHp  332 (458)
T KOG1266|consen  277 ILEIQSTNSESKVEVEENIAN---------VIIGLEN------------GLQRGSITKCLEGEPNGRPDARLLLFHP  332 (458)
T ss_pred             HheeccCCCcceeehhhhhhh---------heeeccC------------ccccCcCcccccCCCCCCcchhhhhcCc
Confidence            77653221111100 000000         0000001            1124788999999999999999987543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.37  E-value=4.6e-12  Score=130.11  Aligned_cols=143  Identities=15%  Similarity=0.118  Sum_probs=95.2

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChh---------------------------------------h
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG---------------------------------------V  220 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~  220 (473)
                      .+.||.|++|.||+|++.++    +.+++|+.+-......                                       .
T Consensus       122 ~~plasaSigQVh~A~l~~G----~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  197 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDG----KEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRE  197 (437)
T ss_pred             CcceeeeehhheEEEEecCC----CEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHH
Confidence            36899999999999998765    3455666543211000                                       0


Q ss_pred             HhHHHHHHHHHhC----CCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHH-HHH
Q 011995          221 KEFINDVNTLASL----QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQ-GLT  295 (473)
Q Consensus       221 ~~~~~Ei~~l~~l----~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~-~L~  295 (473)
                      -.|.+|...+.++    +|.+-+.+-.++.+.. ...+|||||++|++|.++......  .+   .+..++..++. .+.
T Consensus       198 ldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~-~~~vLvmE~i~G~~L~~~~~~~~~--~~---~~~~ia~~~~~~~l~  271 (437)
T TIGR01982       198 LDLRREAANASELGENFKNDPGVYVPEVYWDRT-SERVLTMEWIDGIPLSDIAALDEA--GL---DRKALAENLARSFLN  271 (437)
T ss_pred             HCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhc-CCceEEEEeECCcccccHHHHHhc--CC---CHHHHHHHHHHHHHH
Confidence            1244555555555    2333333333332221 457899999999999887643211  12   23456666665 468


Q ss_pred             HhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          296 FLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       296 yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      .+|..|   ++|+|++|.||+++.++.++++|||++..+.
T Consensus       272 ql~~~g---~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       272 QVLRDG---FFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHhCC---ceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            889998   9999999999999999999999999987764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.32  E-value=9.3e-12  Score=111.18  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=91.1

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcc-cceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC-KLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv-~l~g~~~~~~~~~~~lV~E~  259 (473)
                      +.|+.|.++.||++...+     ..+.+|+..  ........+.+|+.++..+.+.+++ +++.+.  .  ...++||||
T Consensus         4 ~~l~~G~~~~vy~~~~~~-----~~~~lK~~~--~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~--~~~~lv~e~   72 (170)
T cd05151           4 SPLKGGMTNKNYRVEVAN-----KKYVVRIPG--NGTELLINRENEAENSKLAAEAGIGPKLYYFD--P--ETGVLITEF   72 (170)
T ss_pred             eecCCcccCceEEEEECC-----eEEEEEeCC--CCcccccCHHHHHHHHHHHHHhCCCCceEEEe--C--CCCeEEEEe
Confidence            568899999999998542     233344332  2221234567899999998665554 444432  2  345799999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC--CCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG--PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~--~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +++.++.+..           .....++.+++.+|+.||..+  +..++|+|++|.||+++ ++.++++|||.+..
T Consensus        73 i~G~~l~~~~-----------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          73 IEGSELLTED-----------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cCCCcccccc-----------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9998875431           111345678999999999987  22359999999999999 66899999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=1.9e-12  Score=131.74  Aligned_cols=252  Identities=16%  Similarity=0.082  Sum_probs=169.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .+.+|.....||.|.|+.|+....+..  ...+++++-.... ........-..|+.+...+ .|.+++..+.-+...  
T Consensus       263 ~~~df~~v~~i~~~~~~~~~~~~~r~~--~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~--  338 (524)
T KOG0601|consen  263 KLTDFGLVSKISDGNFSSVFKVSKRPE--GDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQL--  338 (524)
T ss_pred             ecCCcceeEEccCCccccceeeeecCC--CCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccc--
Confidence            345688888999999999999875422  2223322221111 1111112224566666665 577888766555444  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEeccC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYG  329 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~DFG  329 (473)
                      ...|+-.|||+++++...+   .-...++...++++..|++.++.++|+..   ++|+|+||+||++..+ +..++.|||
T Consensus       339 r~~~ip~e~~~~~s~~l~~---~~~~~~d~~~~~~~~~q~~~~l~~i~s~~---~~~~d~~psni~i~~~~~~~~~~~~~  412 (524)
T KOG0601|consen  339 RQGYIPLEFCEGGSSSLRS---VTSQMLDEDPRLRLTAQILTALNVIHSKL---FVHLDVKPSNILISNDGFFSKLGDFG  412 (524)
T ss_pred             ccccCchhhhcCcchhhhh---HHHHhcCcchhhhhHHHHHhccccccchh---hhcccccccceeeccchhhhhccccc
Confidence            5677899999999887665   22345788889999999999999999998   9999999999999886 888999999


Q ss_pred             CCcccCCCCccCcccccccC--ChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHIPETDISNSSVAAANL--SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~~~~~~~~~t~~y~--aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ++..+..... ....+.+++  +++......+..+.|++|||.-+.|.++|...-....        .|..         
T Consensus       413 ~~t~~~~~~~-~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~--------~~~~---------  474 (524)
T KOG0601|consen  413 CWTRLAFSSG-VFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGV--------QSLT---------  474 (524)
T ss_pred             cccccceecc-cccccccccccchhhccccccccccccccccccccccccCcccCcccc--------ccee---------
Confidence            9865322111 112233444  5556666778999999999999999999876433211        1111         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                        +...... . .......+..+...++..++..||.+.++....+...
T Consensus       475 --i~~~~~p-~-~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~~  519 (524)
T KOG0601|consen  475 --IRSGDTP-N-LPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEFYR  519 (524)
T ss_pred             --eeccccc-C-CCchHHhhhhhhhhhcCCccccchhhhhhcccchhhh
Confidence              0000000 0 1122377888899999999999999998877665443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.28  E-value=1.1e-10  Score=120.18  Aligned_cols=147  Identities=16%  Similarity=0.235  Sum_probs=112.7

Q ss_pred             hhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011995          218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL  297 (473)
Q Consensus       218 ~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yL  297 (473)
                      .......+-++.|+.++||||++++..+..+  ...|||.|-+  --|..++..      +....+...+.||+.||.||
T Consensus        51 ~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~--~~~ylvTErV--~Pl~~~lk~------l~~~~v~~Gl~qIl~AL~FL  120 (690)
T KOG1243|consen   51 EVTELAKRAVKRLKTLRHPNILSYLDTTEEE--GTLYLVTERV--RPLETVLKE------LGKEEVCLGLFQILAALSFL  120 (690)
T ss_pred             hhhHHHHHHHHHhhhccCchhhhhhhhhccc--CceEEEeecc--ccHHHHHHH------hHHHHHHHHHHHHHHHHHHH
Confidence            3345567788999999999999999988766  6899999987  356666633      23567778899999999999


Q ss_pred             hhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHH
Q 011995          298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLEL  375 (473)
Q Consensus       298 H~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~el  375 (473)
                      |+.+  .++|++|..+.|+++..|..||++|-++........  .....-..|..|+.+....  ...|.|.|||+++|+
T Consensus       121 ~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el  196 (690)
T KOG1243|consen  121 NDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEEL  196 (690)
T ss_pred             hccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--cchhhhhHHHHHHHH
Confidence            9777  599999999999999999999999987754432221  1111223456666653322  457999999999999


Q ss_pred             HcC
Q 011995          376 LTG  378 (473)
Q Consensus       376 ltG  378 (473)
                      +.|
T Consensus       197 ~ng  199 (690)
T KOG1243|consen  197 FNG  199 (690)
T ss_pred             hCc
Confidence            999

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.24  E-value=2.9e-12  Score=136.87  Aligned_cols=245  Identities=18%  Similarity=0.204  Sum_probs=163.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +.|.+.+-+-+|.++.++.+.-.   ..+..+..++..+..  .....+.+..+-.++-..+||.++...--+..  ...
T Consensus       804 d~~~i~~p~qS~sp~ss~p~~pa---~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~--rsP  878 (1205)
T KOG0606|consen  804 DGFEITKPSQSGSPSSSFPASPA---GSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPC--RSP  878 (1205)
T ss_pred             ccceecccccCCCCcccccCCcc---ccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCC--CCC
Confidence            44555566677777777766422   122222222222111  11123334444444444566777655433222  267


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .+||++|+.+++|...|+..   +..+..........+.++++|||...   ++|+|++|.|+|+..++..++.|||...
T Consensus       879 ~~L~~~~~~~~~~~Skl~~~---~~~saepaRs~i~~~vqs~e~L~s~~---r~h~~~~p~~~l~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  879 LPLVGHYLNGGDLPSKLHNS---GCLSAEPARSPILERVQSLESLHSSL---RKHRDLKPDSLLIAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             cchhhHHhccCCchhhhhcC---CCcccccccchhHHHHhhhhccccch---hhcccccccchhhcccCCcccCcccccc
Confidence            89999999999999988543   24555556666777889999999997   9999999999999999999999998432


Q ss_pred             ccC-------C----------------------CC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCC
Q 011995          333 HIP-------E----------------------TD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR  379 (473)
Q Consensus       333 ~~~-------~----------------------~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~  379 (473)
                      ...       .                      .+    .....+|+.|.+||...+......+|+|++|++++|.++|.
T Consensus       953 ~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~ 1032 (1205)
T KOG0606|consen  953 KVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGI 1032 (1205)
T ss_pred             ccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCC
Confidence            110       0                      00    11235688999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHhHhh-hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH
Q 011995          380 KNLDSRHPKEERNLVK-WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMR  446 (473)
Q Consensus       380 ~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  446 (473)
                      +||..........-+. ...+|.                .-+...+.++.+++...+..++.+|..+.
T Consensus      1033 pp~na~tpq~~f~ni~~~~~~~p----------------~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1033 PPFNAETPQQIFENILNRDIPWP----------------EGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             CCCCCcchhhhhhccccCCCCCC----------------CCccccChhhhhhhhhhhccCchhccCcc
Confidence            9998766554332111 000100                01445667888999999999999998765

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.20  E-value=3.2e-11  Score=125.59  Aligned_cols=148  Identities=11%  Similarity=0.150  Sum_probs=90.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC---------------------------------hhh
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS---------------------------------QGV  220 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~  220 (473)
                      ...|+. +.||+|++|.||+|++.++   ++.+++|+.+-....                                 +..
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~---G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~  194 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDN---GREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFE  194 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCC---CCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHH
Confidence            345666 7899999999999998762   345666666532100                                 011


Q ss_pred             H------hHHHHHHHHHhCC----CCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCC---CCCHHHHHHHH
Q 011995          221 K------EFINDVNTLASLQ----HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP---PIDWNTRVKIA  287 (473)
Q Consensus       221 ~------~~~~Ei~~l~~l~----HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~---~l~~~~~~~i~  287 (473)
                      +      .|.+|...+.+++    +.+.+.+-.++.+- ....+|||||++|+.+.++-.-...+.   .+....+..++
T Consensus       195 ~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~-st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~  273 (537)
T PRK04750        195 KTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDY-CSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFF  273 (537)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeeccc-CCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHH
Confidence            1      2344444444442    33333333333321 145689999999999987431111111   12222233333


Q ss_pred             HHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC----cEEEeccCCCcccCC
Q 011995          288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF----SAKLSGYGCAGHIPE  336 (473)
Q Consensus       288 ~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~----~vkl~DFGla~~~~~  336 (473)
                      .|       ++..|   ++|+|+||.||+++.++    .++++|||++..+..
T Consensus       274 ~Q-------if~~G---ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        274 TQ-------VFRDG---FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HH-------HHhCC---eeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            33       34577   99999999999999888    999999999877643

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.16  E-value=2.7e-10  Score=99.86  Aligned_cols=149  Identities=15%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEE
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      ....|-+|+-+.|+++.+.+.....|....|..+...  ..-...+-.+|+.+|.+++--.|.--.-++.+.  ..-+|+
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~--~~~~i~   88 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDT--YGGQIY   88 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEec--CCCeEE
Confidence            4478899999999999988776555554444444332  122345678899999998644443322244443  445689


Q ss_pred             EEeccC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC---cEEEeccCCCc
Q 011995          257 YERLFH-GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF---SAKLSGYGCAG  332 (473)
Q Consensus       257 ~E~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~---~vkl~DFGla~  332 (473)
                      |||+++ .++.+++...-.. .........++..|-..|.-||..+   |||+||..+||+|..++   .+.++|||++.
T Consensus        89 ME~~~g~~~vk~~i~~~~~~-~~~d~~~~~~~~~iG~~igklH~nd---iiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   89 MEFIDGASTVKDFILSTMED-ESEDEGLAELARRIGELIGKLHDND---IIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             EEeccchhHHHHHHHHHccC-cccchhHHHHHHHHHHHHHHhhhCC---eecccccccceEEecCCCcCceEEEeecchh
Confidence            999976 3778887653222 2333344788889999999999999   99999999999996543   46899999985


Q ss_pred             c
Q 011995          333 H  333 (473)
Q Consensus       333 ~  333 (473)
                      .
T Consensus       165 ~  165 (229)
T KOG3087|consen  165 V  165 (229)
T ss_pred             c
Confidence            4

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=99.16  E-value=2e-09  Score=105.24  Aligned_cols=264  Identities=17%  Similarity=0.203  Sum_probs=160.9

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceee-----eecCCCCce
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGF-----HARDGSDQR  253 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~-----~~~~~~~~~  253 (473)
                      ++.||+|+-+.+|-.---.+.      ..|+.. ........+   -++.|... .||-+-.-+.|     +-.+.+...
T Consensus        16 gr~LgqGgea~ly~l~e~~d~------VAKIYh-~Pppa~~aq---k~a~la~~p~~p~~~~rvaWPqa~L~G~~~~~~i   85 (637)
T COG4248          16 GRPLGQGGEADLYTLGEVRDQ------VAKIYH-APPPAAQAQ---KVAELAATPDAPLLNYRVAWPQATLHGGRRGKVI   85 (637)
T ss_pred             CccccCCccceeeecchhhch------hheeec-CCCchHHHH---HHHHhccCCCCcchhhhhcccHHHhhCCCcccee
Confidence            478999999999964211111      123332 222222222   22233333 56533321111     111111235


Q ss_pred             EEEEEeccCCChhhhhh----cCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          254 MLIYERLFHGSLDRLIY----GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~----~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      -++|..+.+..--..++    ++...+...|...+++++.++.+.+-||.+|   .+-+|+.++|+|+++++.|.|.|-.
T Consensus        86 GflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~G---h~vGDVn~~~~lVsd~~~V~LVdsD  162 (637)
T COG4248          86 GFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHG---HVVGDVNQNSFLVSDDSKVVLVDSD  162 (637)
T ss_pred             EEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcC---CcccccCccceeeecCceEEEEccc
Confidence            67777776643222222    2334566899999999999999999999999   8889999999999999999999876


Q ss_pred             CCcccC-CCCccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcC-CCCCCCCChH------HHHhHhhh
Q 011995          330 CAGHIP-ETDISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTG-RKNLDSRHPK------EERNLVKW  396 (473)
Q Consensus       330 la~~~~-~~~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~------~~~~~~~~  396 (473)
                      ...... .......++...|.+||.-.     +-.-+...|.|.|||++++|+.| +.||.+....      .+..+...
T Consensus       163 sfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g  242 (637)
T COG4248         163 SFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHG  242 (637)
T ss_pred             ceeeccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcc
Confidence            544432 22345567889999999865     23346789999999999999876 9999764311      11111110


Q ss_pred             cccccccccccccccccccCCCCCH-HHHHHHHHHHHHhccc--CCCCCCCHHHHHHHHHhhhcccC
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPL-KAARTVADIALRCLQK--EPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~li~~cl~~--dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                      ...+..+ .....  .+ ....+|. -...++..+..+|+..  ++.-|||++-++..|..++....
T Consensus       243 ~f~ya~~-~~~g~--~p-~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L~  305 (637)
T COG4248         243 RFAYASD-QRRGL--KP-PPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQLK  305 (637)
T ss_pred             eeeechh-ccCCC--CC-CCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhhh
Confidence            0000000 00000  00 1112232 3457788888999865  46689999999999998876543

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=2.9e-10  Score=100.09  Aligned_cols=137  Identities=14%  Similarity=0.164  Sum_probs=95.2

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh--hhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      ..+++|+-+.+|.+.+-+.....|...-|-.+...-.+  ...+-.+|..+|.++.--.|.--+=|..+.  +...|+||
T Consensus         2 ~~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~--~~~~I~me   79 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDP--DNGLIVME   79 (204)
T ss_pred             chhhCCcceeEEeeeccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcC--CCCEEEEE
Confidence            46789999999999775544332222222222211111  124457899999988654444333233444  66789999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |++|-.|.+.+...          ...++..+-.-+.-||..+   |||+||.++||++..++ +.++||||+.+
T Consensus        80 ~I~G~~lkd~l~~~----------~~~~~r~vG~~vg~lH~~g---ivHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          80 YIEGELLKDALEEA----------RPDLLREVGRLVGKLHKAG---IVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             EeCChhHHHHHHhc----------chHHHHHHHHHHHHHHhcC---eecCCCccceEEEeCCc-EEEEECCcccc
Confidence            99998888888432          3567777778889999999   99999999999998775 89999999864

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.14  E-value=6.6e-10  Score=103.54  Aligned_cols=145  Identities=15%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCC--CcccceeeeecCC-CCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP--NLCKLLGFHARDG-SDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hp--nIv~l~g~~~~~~-~~~~~lV~  257 (473)
                      +.|+.|.++.||++...+    ++.+.+|+............+..|++++..+.+.  ++.+++.+..... .+..++||
T Consensus         4 ~~l~~G~~n~~~~v~~~~----g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~   79 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG----GRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVM   79 (223)
T ss_pred             eecCCCccceEEEEEecC----CcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEE
Confidence            568999999999998654    1233344333222112456789999999999763  4566776654321 13568999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC------------------------------------
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG------------------------------------  301 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~------------------------------------  301 (473)
                      ||++|.++.+.+..    ..++......++.+++.+|.+||+..                                    
T Consensus        80 e~i~G~~l~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (223)
T cd05154          80 ERVDGRVLRDRLLR----PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPP  155 (223)
T ss_pred             EEeCCEecCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccH
Confidence            99999888776521    34677788888888888888888521                                    


Q ss_pred             -----------------CCceeecCCCCCceeeCC--CCcEEEeccCCCcc
Q 011995          302 -----------------PFQAMYNEFSTANIQIDK--DFSAKLSGYGCAGH  333 (473)
Q Consensus       302 -----------------~~~ivHrDlkp~NILl~~--~~~vkl~DFGla~~  333 (473)
                                       +..++|+|+.+.|||++.  ++.+.|+||+.+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         156 AMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                             245799999999999998  66789999997753

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.12  E-value=1.2e-09  Score=99.18  Aligned_cols=141  Identities=13%  Similarity=0.092  Sum_probs=94.2

Q ss_pred             CcceeecCCceEEEEEECCCC---eeeeEEEEEEEecCC-----C----------------ChhhHhHH----HHHHHHH
Q 011995          180 DRCISEGLSSVMYRASFGDDA---STSKKFEATVTRLNP-----S----------------SQGVKEFI----NDVNTLA  231 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~---~~~~~~~~~~~~~~~-----~----------------~~~~~~~~----~Ei~~l~  231 (473)
                      ...||.|--+.||.|.-.++.   .....+++|+.+...     .                ......+.    +|+..|.
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            367999999999999744310   012344455543321     0                01122233    7999999


Q ss_pred             hCCC--CCcccceeeeecCCCCceEEEEEeccCCChhh-hhhcCCCCCCCCHHHHHHHHHHHHHHHHHh-hhcCCCceee
Q 011995          232 SLQH--PNLCKLLGFHARDGSDQRMLIYERLFHGSLDR-LIYGRSDGPPIDWNTRVKIALCAAQGLTFL-HEEGPFQAMY  307 (473)
Q Consensus       232 ~l~H--pnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~-~l~~~~~~~~l~~~~~~~i~~~i~~~L~yL-H~~~~~~ivH  307 (473)
                      ++..  -++...+++      ...+|||||+.+..+.. .+.    ...++......+..+++.+|..| |..+   |||
T Consensus        82 rl~~~Gv~vP~pi~~------~~~~lvME~Ig~~~~~~~~Lk----d~~~~~~~~~~i~~~i~~~l~~l~H~~g---lVH  148 (197)
T cd05146          82 RMQKAGIPCPEVVVL------KKHVLVMSFIGDDQVPAPKLK----DAKLNDEEMKNAYYQVLSMMKQLYKECN---LVH  148 (197)
T ss_pred             HHHHcCCCCCeEEEe------cCCEEEEEEcCCCCccchhhh----ccccCHHHHHHHHHHHHHHHHHHHHhCC---eec
Confidence            9843  455566643      23579999997654422 221    12345556778889999999999 7888   999


Q ss_pred             cCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          308 NEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       308 rDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||++.|||++ ++.+.|+|||.+...
T Consensus       149 GDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         149 ADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             CCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            99999999997 467999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.91  E-value=6.8e-08  Score=97.01  Aligned_cols=218  Identities=17%  Similarity=0.236  Sum_probs=143.7

Q ss_pred             CceEEEEEECCCCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCCCCCcccceeeeecC--CCCceEEEEEeccC-C
Q 011995          188 SSVMYRASFGDDASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQHPNLCKLLGFHARD--GSDQRMLIYERLFH-G  263 (473)
Q Consensus       188 ~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~--~~~~~~lV~E~~~~-g  263 (473)
                      ..+-|++...-+   +..  +..+|++.. .+.......-++.++++.|.|||++.+++...  +...++|||+|+++ +
T Consensus       289 ~~Ttyk~~s~~D---G~~--YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~  363 (655)
T KOG3741|consen  289 SITTYKATSNVD---GNA--YVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSP  363 (655)
T ss_pred             cceeEeeeeccC---Cce--eeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCc
Confidence            356788874333   333  333444211 11112233557899999999999999887632  23678999999876 5


Q ss_pred             ChhhhhhcCC------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          264 SLDRLIYGRS------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       264 sL~~~l~~~~------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      +|.++.....            .+..+++..++.++.|+..||.++|+.|   +.-+-|.+.+||++.+.+++|+..|+.
T Consensus       364 TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG---LAck~L~~~kIlv~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  364 TLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG---LACKTLDLKKILVTGKMRIRISGCGIM  440 (655)
T ss_pred             hHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC---ceeecccHhHeEeeCcceEEEecccce
Confidence            7877765432            2234678899999999999999999999   888999999999999999999988877


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..+..+..            |.++.   -.+-|.=-||.+++.|.||..--...+......+.                 
T Consensus       441 Dvl~~d~~------------~~le~---~Qq~D~~~lG~ll~aLAt~~~ns~~~d~~~~s~~~-----------------  488 (655)
T KOG3741|consen  441 DVLQEDPT------------EPLES---QQQNDLRDLGLLLLALATGTENSNRTDSTQSSHLT-----------------  488 (655)
T ss_pred             eeecCCCC------------cchhH---HhhhhHHHHHHHHHHHhhcccccccccchHHHHHH-----------------
Confidence            65544320            11111   23568889999999999996532111111110000                 


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                            .+....+.++++++......++.+ -+..+++..+
T Consensus       489 ------~I~~~yS~D~rn~v~yl~s~~~~~-ksI~~llp~~  522 (655)
T KOG3741|consen  489 ------RITTTYSTDLRNVVEYLESLNFRE-KSIQDLLPMI  522 (655)
T ss_pred             ------HhhhhhhHHHHHHHHHHHhcCccc-ccHHHHHHHH
Confidence                  113355667777777777777775 5666666544

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.82  E-value=8.2e-08  Score=88.80  Aligned_cols=141  Identities=14%  Similarity=0.080  Sum_probs=95.6

Q ss_pred             CceEEEEEECCCCeeeeEEEEEEEecCCC------ChhhHhHHHHHHHHHhCCCC--CcccceeeeecCC--CCceEEEE
Q 011995          188 SSVMYRASFGDDASTSKKFEATVTRLNPS------SQGVKEFINDVNTLASLQHP--NLCKLLGFHARDG--SDQRMLIY  257 (473)
Q Consensus       188 ~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Ei~~l~~l~Hp--nIv~l~g~~~~~~--~~~~~lV~  257 (473)
                      -|.+|.+.........+.+.++.......      .-......+|...+..+..-  .+.+.+++.....  ....+||+
T Consensus        17 R~~~~~~~~~~~~~~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lit   96 (206)
T PF06293_consen   17 RRGGWFGVQRVVDLVGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLIT   96 (206)
T ss_pred             CceEEEEEEccccccceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEE
Confidence            34566666544333444443432211111      12345678888888877433  3445555554421  13458999


Q ss_pred             EeccCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC---cEEEeccCCCcc
Q 011995          258 ERLFHG-SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF---SAKLSGYGCAGH  333 (473)
Q Consensus       258 E~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~---~vkl~DFGla~~  333 (473)
                      |++++. +|.+++....   .++......++.+++..+.-||..|   |+|+|+++.|||++.++   .+.++||+.++.
T Consensus        97 e~l~~~~~L~~~~~~~~---~~~~~~~~~ll~~l~~~i~~lH~~g---i~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen   97 EALPGAQDLRDLLQQWE---QLDPSQRRELLRALARLIAKLHDAG---IYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             EeCCCcccHHHHHHhhc---ccchhhHHHHHHHHHHHHHHHHHCc---CCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            999874 7999885421   2566778899999999999999999   99999999999999887   899999997764


Q ss_pred             c
Q 011995          334 I  334 (473)
Q Consensus       334 ~  334 (473)
                      .
T Consensus       171 ~  171 (206)
T PF06293_consen  171 R  171 (206)
T ss_pred             C
Confidence            3

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.81  E-value=1e-07  Score=91.33  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHhCCCCCc--ccceeeeecCC---CCceEEEEEeccCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 011995          222 EFINDVNTLASLQHPNL--CKLLGFHARDG---SDQRMLIYERLFHG-SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT  295 (473)
Q Consensus       222 ~~~~Ei~~l~~l~HpnI--v~l~g~~~~~~---~~~~~lV~E~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~  295 (473)
                      .+.+|...+.++..-+|  ...++|.....   ...-+||+|++++. +|.+++.... ....+...+..++.+++..+.
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~-~~~~~~~~~~~ll~~la~~i~  152 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWA-TNPPDPRLKRMLIKRVATMVR  152 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhc-ccCCCHHHHHHHHHHHHHHHH
Confidence            37789998888843333  34444543211   23578999999876 8988874321 234566778899999999999


Q ss_pred             HhhhcCCCceeecCCCCCceeeCC-------CCcEEEeccCCCcc
Q 011995          296 FLHEEGPFQAMYNEFSTANIQIDK-------DFSAKLSGYGCAGH  333 (473)
Q Consensus       296 yLH~~~~~~ivHrDlkp~NILl~~-------~~~vkl~DFGla~~  333 (473)
                      -||..|   |+|+|+++.|||++.       ++.+.|+||+.+..
T Consensus       153 ~LH~~G---i~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        153 DMHAAG---INHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHCc---CccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            999999   999999999999975       46899999998753

>PRK09902 hypothetical protein; Provisional

Probab=98.76  E-value=1.6e-07  Score=85.79  Aligned_cols=154  Identities=11%  Similarity=0.068  Sum_probs=102.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC--cccceeeee---cC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN--LCKLLGFHA---RD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn--Iv~l~g~~~---~~  248 (473)
                      ...+...---|+||.+-|++..+.+...-.|.-.-.+.+.-.-.-....|.+|+..|.++..-+  +.+.. ++.   ..
T Consensus        17 ~~~wve~pN~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~   95 (216)
T PRK09902         17 EGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIE   95 (216)
T ss_pred             CCceecCCCcCCCCcceEEEEEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccC
Confidence            3444444445789999999987765521111111001110001346788999999999985332  34444 322   12


Q ss_pred             CCCceEEEEEeccC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc--EEE
Q 011995          249 GSDQRMLIYERLFH-GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS--AKL  325 (473)
Q Consensus       249 ~~~~~~lV~E~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~--vkl  325 (473)
                      ..-.-+||+|-+++ -+|.+++... .-.+.+...+..++.+|+..|.-||+.+   +.|+|+.+.|||++.++.  +++
T Consensus        96 ~~~rA~LVTe~L~g~~~L~~~l~~~-~~~~~~~~~k~~il~~va~~ia~LH~~G---v~Hgdly~khIll~~~g~~~v~l  171 (216)
T PRK09902         96 GEWRALLVTEDMAGFISIADWYAQH-AVSPYSDEVRQAMLKAVALAFKKMHSVN---RQHGCCYVRHIYVKTEGKAEAGF  171 (216)
T ss_pred             CceEEEEEEEeCCCCccHHHHHhcC-CcCCcchHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHhheeecCCCCeeEEE
Confidence            22346899997754 4898888442 2235677888899999999999999999   999999999999986666  999


Q ss_pred             eccCCCc
Q 011995          326 SGYGCAG  332 (473)
Q Consensus       326 ~DFGla~  332 (473)
                      +||--++
T Consensus       172 IDlEk~r  178 (216)
T PRK09902        172 LDLEKSR  178 (216)
T ss_pred             EEhhccc
Confidence            9997654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.74  E-value=3.3e-09  Score=109.79  Aligned_cols=145  Identities=17%  Similarity=0.222  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-C-----ccC-----cccccccCChhhhhcC
Q 011995          289 CAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-D-----ISN-----SSVAAANLSVETLERG  357 (473)
Q Consensus       289 ~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-~-----~~~-----~~~t~~y~aPE~~~~~  357 (473)
                      +++.|+.|+|...  .+||+.|.|++|.++.++..||+.|+.+...... +     +..     ......|.|||++.+.
T Consensus       107 ~v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~  184 (700)
T KOG2137|consen  107 NVADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGT  184 (700)
T ss_pred             cccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccc
Confidence            3448999999987  6999999999999999999999999987654331 1     111     1223679999999988


Q ss_pred             CCCCcCCchHHHHHHHHHH-cCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcc
Q 011995          358 LLTPKSNVWSFGIVLLELL-TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ  436 (473)
Q Consensus       358 ~~s~~sDvwSlGvvl~ell-tG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~  436 (473)
                      ..+.++|+||+||++|-+. .|..-+..........+.     ..         .+..-...+..+++.++.+=+.+++.
T Consensus       185 ~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~-----~~---------~~~~~~~~~s~~~p~el~~~l~k~l~  250 (700)
T KOG2137|consen  185 TNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFS-----RN---------LLNAGAFGYSNNLPSELRESLKKLLN  250 (700)
T ss_pred             cccccccceeeeeEEEEEecCCcchhhccCCcchhhhh-----hc---------ccccccccccccCcHHHHHHHHHHhc
Confidence            8899999999999999998 455544433211111100     00         00011112245677889999999999


Q ss_pred             cCCCCCCCHHHHH
Q 011995          437 KEPSERPTMRSIF  449 (473)
Q Consensus       437 ~dP~~RPt~~eil  449 (473)
                      .+...||++.+++
T Consensus       251 ~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  251 GDSAVRPTLDLLL  263 (700)
T ss_pred             CCcccCcchhhhh
Confidence            9999999776654

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.59  E-value=2.5e-07  Score=86.52  Aligned_cols=135  Identities=17%  Similarity=0.097  Sum_probs=93.8

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC---------------------ChhhHhHHHHHHHHHhCCC
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS---------------------SQGVKEFINDVNTLASLQH  235 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~Ei~~l~~l~H  235 (473)
                      ..++..||-|--+.||.|....+.    ++++|+-+....                     .-......+|.++|.+|.-
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~----~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~  168 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGR----KVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYP  168 (304)
T ss_pred             HhhccccccCccceEEEEECCCCC----EEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhh
Confidence            445689999999999999865433    333444333210                     1112345789999999965


Q ss_pred             C--CcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCC
Q 011995          236 P--NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA  313 (473)
Q Consensus       236 p--nIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~  313 (473)
                      .  .+.+.+++      +..++||||++|-.|...-        ++......++..|+.-+.-+-..|   |||+|++.-
T Consensus       169 ~G~~VP~P~~~------nRHaVvMe~ieG~eL~~~r--------~~~en~~~il~~il~~~~~~~~~G---iVHGDlSef  231 (304)
T COG0478         169 EGVKVPKPIAW------NRHAVVMEYIEGVELYRLR--------LDVENPDEILDKILEEVRKAYRRG---IVHGDLSEF  231 (304)
T ss_pred             cCCCCCCcccc------ccceeeeehcccceeeccc--------CcccCHHHHHHHHHHHHHHHHHcC---ccccCCchh
Confidence            5  67777654      4567999999886664322        223444555666666666666777   999999999


Q ss_pred             ceeeCCCCcEEEeccCCCc
Q 011995          314 NIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       314 NILl~~~~~vkl~DFGla~  332 (473)
                      |||++++|.+.++||--+.
T Consensus       232 NIlV~~dg~~~vIDwPQ~v  250 (304)
T COG0478         232 NILVTEDGDIVVIDWPQAV  250 (304)
T ss_pred             eEEEecCCCEEEEeCcccc
Confidence            9999999999999995443

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.53  E-value=2.4e-07  Score=83.86  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHhCCCC--CcccceeeeecCCCCceEEEEEecc--CCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHH-
Q 011995          222 EFINDVNTLASLQHP--NLCKLLGFHARDGSDQRMLIYERLF--HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF-  296 (473)
Q Consensus       222 ~~~~Ei~~l~~l~Hp--nIv~l~g~~~~~~~~~~~lV~E~~~--~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~y-  296 (473)
                      ...+|.+.|.++..-  ++.+++++.      ..+|||||++  |..+..+....     ++......++.+++..+.. 
T Consensus        54 ~~~~E~~~L~~l~~~Gv~vP~p~~~~------~~~ivME~I~~~G~~~~~l~~~~-----~~~~~~~~~~~~il~~~~~~  122 (188)
T PF01163_consen   54 WAKKEFRNLKRLYEAGVPVPKPYDYN------RNVIVMEYIGEDGVPLPRLKDVD-----LSPEEPKELLEEILEEIIKM  122 (188)
T ss_dssp             HHHHHHHHHHHCCCTT-SS--EEEEE------TTEEEEE--EETTEEGGCHHHCG-----GGGSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCccCCcEEEEe------CCEEEEEecCCCccchhhHHhcc-----ccchhHHHHHHHHHHHHHHH
Confidence            457899999999765  456665442      2379999998  55554433211     1134456777888886655 


Q ss_pred             hhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       297 LH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +|..|   |||+||.+.|||++++ .+.|+|||.+...
T Consensus       123 ~~~~g---ivHGDLs~~NIlv~~~-~~~iIDf~qav~~  156 (188)
T PF01163_consen  123 LHKAG---IVHGDLSEYNILVDDG-KVYIIDFGQAVDS  156 (188)
T ss_dssp             HHCTT---EEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred             HHhcC---ceecCCChhhEEeecc-eEEEEecCcceec
Confidence            57888   9999999999999988 8999999987654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.33  E-value=1.4e-07  Score=96.90  Aligned_cols=181  Identities=13%  Similarity=0.074  Sum_probs=130.1

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC-cccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN-LCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn-Iv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      +.+++|+++.+|+.+-.    +.+.+..+++..      .....-++++|.+++||| .+..++-+  +.++..++++++
T Consensus       248 h~fvK~altknpKkRpt----aeklL~h~fvs~------~l~~rl~~eLLdK~n~P~~~v~~~~d~--~~E~~~~i~~~i  315 (829)
T KOG0576|consen  248 HNFVKGALTKNPKKRPT----AEKLLQHPFVSQ------TLSRRLAIELLDKVNNPNPVVRYLEDY--DGEDYLWIPMRI  315 (829)
T ss_pred             HHHHHHHhcCCCccCCC----hhhheeceeecc------chhhHHHHHHHHHccCCCCcccccccC--Ccccccchhhhh
Confidence            56789999999998622    222222333321      155667899999999999 55554433  334788999999


Q ss_pred             ccCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC
Q 011995          260 LFHG-SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD  338 (473)
Q Consensus       260 ~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~  338 (473)
                      +.++ +-....  ......+...+...+.+.-+.+++|||+..   -+|+|    |||..+ +..+..||+....+....
T Consensus       316 ~s~~rs~~~~~--~~se~~~~~~~~~~~~r~et~~l~~l~~~~---~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~  385 (829)
T KOG0576|consen  316 CSTGRSSALEM--TVSEIALEQYQFAYPLRKETRPLAELHSSY---KVHRD----NILGSE-EEVKLLDFAVPPQLTRTM  385 (829)
T ss_pred             hcCCccccccC--ChhhHhhhhhhhhhhhhhhccccccccccc---ccCcc----cccccc-cccccccccCCcccCccc
Confidence            9877 222111  112233455566677778889999999975   58998    887766 688999999887765543


Q ss_pred             -ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          339 -ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       339 -~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                       .....+++.+++||+...+.+....|+|++|+-..+|--|.+|-.
T Consensus       386 ~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  386 KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             ccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence             345578899999999999999999999999998888888877654

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.30  E-value=1.1e-05  Score=75.62  Aligned_cols=138  Identities=12%  Similarity=0.115  Sum_probs=77.1

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC--cccceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN--LCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn--Iv~l~g~~~~~~~~~~~lV~E  258 (473)
                      ..||.|..+.||+..  ++.     +.+++..   .......+.+|.+++..+..-.  +.+.+++....  +...+|||
T Consensus         7 ~~i~~G~t~~~y~~~--~~~-----~VlR~~~---~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~--~~~glv~e   74 (226)
T TIGR02172         7 TQTGEGGNGESYTHK--TGK-----WMLKLYN---PGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDG--GRLGLIYE   74 (226)
T ss_pred             eeecCCCCcceeEec--CCC-----EEEEeCC---CCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecC--Ceeeeeee
Confidence            678999999999842  221     1122222   2223455789999999986433  35666666444  55788999


Q ss_pred             eccCCC-hhhhh---------------------hcCCCCCCCCHHHHHH-HHH----------HHHH-HHHHhhh-cCCC
Q 011995          259 RLFHGS-LDRLI---------------------YGRSDGPPIDWNTRVK-IAL----------CAAQ-GLTFLHE-EGPF  303 (473)
Q Consensus       259 ~~~~gs-L~~~l---------------------~~~~~~~~l~~~~~~~-i~~----------~i~~-~L~yLH~-~~~~  303 (473)
                      +++|.. +...+                     +.- .-.......... +..          .+.. ...+|.. ...+
T Consensus        75 ~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~-~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~  153 (226)
T TIGR02172        75 LIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHST-KCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTS  153 (226)
T ss_pred             ecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCC
Confidence            998863 22111                     110 000111111000 000          0011 1122211 1123


Q ss_pred             ceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          304 QAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       304 ~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++|+|+.|.||++++++ +.|+||+.+.
T Consensus       154 ~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       154 TCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             ceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            579999999999999888 9999998764

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.26  E-value=4.7e-06  Score=75.66  Aligned_cols=104  Identities=25%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             HHHHHHHHhCCC-CCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 011995          224 INDVNTLASLQH-PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGP  302 (473)
Q Consensus       224 ~~Ei~~l~~l~H-pnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~  302 (473)
                      ..|.-+|..+.+ +++.+++|+|-     . ++|.||...+++......-......+|..+.+||.+++..+.+|+....
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG-----~-~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~   80 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCG-----R-FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPL   80 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECC-----C-EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            358888888866 69999999992     2 5789999877664321000112246899999999999999999988554


Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      -.+.-.|++++|+-++++|.+|++|...+..
T Consensus        81 ~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   81 GFFYLCDVSPDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             CcEEEeecchHHeEEeCCCcEEEEechhcch
Confidence            4588899999999999999999999986543

Proteins in this uncharacterised family are described as transmembrane proteins.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.16  E-value=1.4e-05  Score=73.40  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=53.7

Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...+|||||++|..|.++..       ++.    .++..+.+++.-||..|   ++|+|..|.|++++.++ ++++||+.
T Consensus       116 ~~~~ll~EYIeG~~l~d~~~-------i~e----~~~~ki~~~ikqlH~~G---~~HGD~hpgNFlv~~~~-i~iID~~~  180 (229)
T PF06176_consen  116 SSYVLLMEYIEGVELNDIED-------IDE----DLAEKIVEAIKQLHKHG---FYHGDPHPGNFLVSNNG-IRIIDTQG  180 (229)
T ss_pred             eEEEEEEEEecCeecccchh-------cCH----HHHHHHHHHHHHHHHcC---CccCCCCcCcEEEECCc-EEEEECcc
Confidence            35678999999988876541       222    34556778899999999   99999999999999665 89999986


Q ss_pred             Ccc
Q 011995          331 AGH  333 (473)
Q Consensus       331 a~~  333 (473)
                      .+.
T Consensus       181 k~~  183 (229)
T PF06176_consen  181 KRM  183 (229)
T ss_pred             ccc
Confidence            643

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.14  E-value=3.3e-05  Score=73.23  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             ceeecCC-ceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEEEEEe
Q 011995          182 CISEGLS-SVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       182 ~lG~G~~-g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      .|..|.+ ..||+....+.     .  +.++......  ...+.+|++++..+. +--+.+++++....  +..++|||+
T Consensus         5 ~~~~g~~~~~v~~~~~~~~-----~--~~vk~~~~~~--~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~--~~~~lv~e~   73 (244)
T cd05150           5 RVTEGQSGATVYRLDGKNP-----G--LYLKIAPSGP--TYELEREAERLRWLAGKLPVPEVIDYGSDD--GRAWLLTSA   73 (244)
T ss_pred             ecCCCCCcCeEEEEcCCCC-----c--EEEEecCCCc--ccchHHHHHHHHHHHhcCCCCeEEEEEecC--CccEEEEEe
Confidence            3445555 77999864321     1  2222222211  346778999998883 33455677666543  567899999


Q ss_pred             ccCCChhhhh-------------------hcCCC-CCCCCHH--HHHHHHH--------------------HHHHHHHHh
Q 011995          260 LFHGSLDRLI-------------------YGRSD-GPPIDWN--TRVKIAL--------------------CAAQGLTFL  297 (473)
Q Consensus       260 ~~~gsL~~~l-------------------~~~~~-~~~l~~~--~~~~i~~--------------------~i~~~L~yL  297 (473)
                      ++|.+|....                   +.... ...+...  .......                    .+...+..|
T Consensus        74 i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  153 (244)
T cd05150          74 VPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAEL  153 (244)
T ss_pred             eCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHH
Confidence            9988776432                   11100 1111100  0000000                    011112222


Q ss_pred             hh----cCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          298 HE----EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       298 H~----~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      -.    ..++.++|+|+.+.|||+++++.+.|+||+.+.
T Consensus       154 ~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         154 EATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             HhhCCCcCceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            11    123459999999999999998888999998764

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.07  E-value=5.2e-05  Score=70.81  Aligned_cols=144  Identities=19%  Similarity=0.222  Sum_probs=79.6

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCC--CcccceeeeecCC-CCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP--NLCKLLGFHARDG-SDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hp--nIv~l~g~~~~~~-~~~~~lV~  257 (473)
                      +.|+.|..+.||+....++     .+.+|+..  .. .....+.+|..+++.+...  .+.+++.+..... ....+++|
T Consensus         3 ~~l~~G~~n~~~~v~~~~~-----~~vlK~~~--~~-~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~   74 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDDG-----RYVLKFYR--PP-DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLM   74 (239)
T ss_dssp             EEEEESSSSEEEEEEETTS-----EEEEEEES--SH-HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEE
T ss_pred             ccCCCCCeeeEEEEEECCc-----EEEEEEeC--CC-CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEE
Confidence            5789999999999986553     22233322  12 4567788999999888533  3456665443321 23468999


Q ss_pred             EeccCCChhh----------------hh---hcC-CCCCCCCHHHH---------HHH------------HHHHHH-HHH
Q 011995          258 ERLFHGSLDR----------------LI---YGR-SDGPPIDWNTR---------VKI------------ALCAAQ-GLT  295 (473)
Q Consensus       258 E~~~~gsL~~----------------~l---~~~-~~~~~l~~~~~---------~~i------------~~~i~~-~L~  295 (473)
                      +++++..+..                .+   +.. .....+.+...         ...            ...+.. .+.
T Consensus        75 ~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T PF01636_consen   75 EYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQ  154 (239)
T ss_dssp             EEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             EEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence            9999987777                11   111 01111111110         000            111222 333


Q ss_pred             Hhhhc----CCCceeecCCCCCceeeC-CCCcEEEeccCCCc
Q 011995          296 FLHEE----GPFQAMYNEFSTANIQID-KDFSAKLSGYGCAG  332 (473)
Q Consensus       296 yLH~~----~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla~  332 (473)
                      .++..    .+..++|+|+.+.|||++ .++.+-|+||+.+.
T Consensus       155 ~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  155 ELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             HHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             HHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccce
Confidence            33321    334699999999999999 66666899998764

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PLN02876 acyl-CoA dehydrogenase

Probab=98.02  E-value=9.2e-05  Score=82.63  Aligned_cols=153  Identities=13%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCc--ccceeeeecCC-CCceEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNL--CKLLGFHARDG-SDQRML  255 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnI--v~l~g~~~~~~-~~~~~l  255 (473)
                      ...|+.|.++.+|+..+.++... ..+.+++............+.+|+++|+.+. |.+|  .+++.+|.+.. .+..|+
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~-~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~fl  121 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSV-KRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFY  121 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcc-eeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceE
Confidence            46788999999999876543211 2222222221111123356889999999995 6665  67777775431 135789


Q ss_pred             EEEeccCCChhhh-----------------------hhcCCC--------CCCCCH--HHHHHHHH--------------
Q 011995          256 IYERLFHGSLDRL-----------------------IYGRSD--------GPPIDW--NTRVKIAL--------------  288 (473)
Q Consensus       256 V~E~~~~gsL~~~-----------------------l~~~~~--------~~~l~~--~~~~~i~~--------------  288 (473)
                      ||||++|..+.+.                       ||.-..        +.+..+  ..+..|..              
T Consensus       122 VME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g~~~~~~~~~l~~w~~~~~~~~~~~~~~~~  201 (822)
T PLN02876        122 IMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVDAIGLGKYGRRDNYCKRQVERWAKQYLASTGEGKPPRN  201 (822)
T ss_pred             EEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCchhcChhhcCCCCchHHHHHHHHHHHHHHhhcccCCCCC
Confidence            9999987643211                       111100        001111  11211111              


Q ss_pred             -HHHHHHHHhhhcCC--------CceeecCCCCCceeeCCC-C-cEEEeccCCCcc
Q 011995          289 -CAAQGLTFLHEEGP--------FQAMYNEFSTANIQIDKD-F-SAKLSGYGCAGH  333 (473)
Q Consensus       289 -~i~~~L~yLH~~~~--------~~ivHrDlkp~NILl~~~-~-~vkl~DFGla~~  333 (473)
                       .+...+.+|..+-+        +.+||+|+++.|||++.+ + .+-|.||.++..
T Consensus       202 ~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~  257 (822)
T PLN02876        202 PKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTL  257 (822)
T ss_pred             hhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeecccc
Confidence             12334566654332        249999999999999853 3 357999998754

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.01  E-value=0.00012  Score=68.11  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=93.3

Q ss_pred             CCHHHHHHHhcccccCcc---eeecCCceEEEEEECCCCeeeeEEEEEEEecCCC------------------ChhhH--
Q 011995          165 FPLDEVAAACHNFFSDRC---ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS------------------SQGVK--  221 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~---lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~--  221 (473)
                      .+++.|........+...   |..|--+.||+|.-.+    ...+++++.+....                  ....+  
T Consensus        35 ~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~----~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~l  110 (268)
T COG1718          35 RTLETLRRLLSRGVITELVGCISTGKEANVYLAETGD----GRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKL  110 (268)
T ss_pred             HHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCC----CceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHH
Confidence            455666666666655554   4455666799986432    23334444433211                  00111  


Q ss_pred             ---hHHHHHHHHHhCC--CCCcccceeeeecCCCCceEEEEEeccCCCh-hhhhhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 011995          222 ---EFINDVNTLASLQ--HPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLT  295 (473)
Q Consensus       222 ---~~~~Ei~~l~~l~--HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL-~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~  295 (473)
                         -..+|+..|.++.  +-.+.+-+++.      .-.|||||+....+ .-.|    ....+.......+..++++.+.
T Consensus       111 v~~W~~kEf~NL~R~~eAGVrvP~Pi~~~------~nVLvMEfIg~~g~pAP~L----kDv~~e~~e~~~~~~~~v~~~~  180 (268)
T COG1718         111 VFAWARKEFRNLKRAYEAGVRVPEPIAFR------NNVLVMEFIGDDGLPAPRL----KDVPLELEEAEGLYEDVVEYMR  180 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCceeec------CCeEEEEeccCCCCCCCCc----ccCCcCchhHHHHHHHHHHHHH
Confidence               1245777777763  44455555543      23699999854311 1111    1222333356777888888888


Q ss_pred             Hhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          296 FLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       296 yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      -|-. .+   +||+||+.-|||+. ++.+.|+|||-|....
T Consensus       181 ~l~~~a~---LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         181 RLYKEAG---LVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             HHHHhcC---cccccchhhheEEE-CCeEEEEECccccccC
Confidence            8877 55   99999999999999 8899999999776543

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.00  E-value=4.7e-05  Score=67.05  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      .+.|++|++|.||+|.+.+.     .+++++-+   .+.....+..|.++|..+.--++.+=+-++     +.-++.|||
T Consensus        27 ~~~L~KG~~s~Vyl~~~~~~-----~~a~Kvrr---~ds~r~~l~kEakiLeil~g~~~~p~vy~y-----g~~~i~me~   93 (201)
T COG2112          27 EKELAKGTTSVVYLGEWRGG-----EVALKVRR---RDSPRRNLEKEAKILEILAGEGVTPEVYFY-----GEDFIRMEY   93 (201)
T ss_pred             hhhhhcccccEEEEeeccCc-----eEEEEEec---CCcchhhHHHHHHHHHHhhhcCCCceEEEe-----chhhhhhhh
Confidence            37899999999999988765     23345444   334467888999999999877665433222     223466999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCC-CCceeeCCCCcEEEeccCCCccc
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS-TANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlk-p~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +.|-.|.++-...      +-.+    ...++..---|-..|   |-|+.|. |...+|-.++.+.|+||..|++-
T Consensus        94 i~G~~L~~~~~~~------~rk~----l~~vlE~a~~LD~~G---I~H~El~~~~k~vlv~~~~~~iIDFd~At~k  156 (201)
T COG2112          94 IDGRPLGKLEIGG------DRKH----LLRVLEKAYKLDRLG---IEHGELSRPWKNVLVNDRDVYIIDFDSATFK  156 (201)
T ss_pred             hcCcchhhhhhcc------cHHH----HHHHHHHHHHHHHhc---cchhhhcCCceeEEecCCcEEEEEccchhhc
Confidence            9888887765211      2223    334444444455666   8888886 44444444558999999988743

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.98  E-value=4.1e-05  Score=79.71  Aligned_cols=79  Identities=20%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ....|+|||++|..+.+......  ..++...+.....++  -+..+-..|   ++|.|..|.||+++.+|.+.+.|||+
T Consensus       239 ~~~VLtmE~i~Gi~i~d~~~l~~--~g~d~k~ia~~~~~~--f~~q~~~dg---ffHaDpHpGNi~v~~~g~i~~lDfGi  311 (517)
T COG0661         239 TRRVLTMEWIDGIKISDIAALKS--AGIDRKELAELLVRA--FLRQLLRDG---FFHADPHPGNILVRSDGRIVLLDFGI  311 (517)
T ss_pred             CCcEEEEEeeCCEecccHHHHHh--cCCCHHHHHHHHHHH--HHHHHHhcC---ccccCCCccceEEecCCcEEEEcCcc
Confidence            56789999999999988853222  234533333332222  233333456   99999999999999999999999999


Q ss_pred             CcccCC
Q 011995          331 AGHIPE  336 (473)
Q Consensus       331 a~~~~~  336 (473)
                      ...+..
T Consensus       312 ~g~l~~  317 (517)
T COG0661         312 VGRLDP  317 (517)
T ss_pred             eecCCH
Confidence            877653

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.96  E-value=0.0002  Score=65.51  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---------------CChhhHhHHHHHHHHHhCC------CCC
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---------------SSQGVKEFINDVNTLASLQ------HPN  237 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Ei~~l~~l~------Hpn  237 (473)
                      ....||+|+.-.||.--  ++...    .+||.+...               ......+..+|+.-...+.      +.+
T Consensus         5 ~~~~i~~G~~R~cy~HP--~dp~~----cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~   78 (199)
T PF10707_consen    5 ESDLIAQGGERDCYQHP--DDPNL----CIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSH   78 (199)
T ss_pred             CCcccccCCCceEEECC--CCCCe----EEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccc
Confidence            34789999999999753  22211    144433222               0123466677776666555      788


Q ss_pred             cccceeeeecCCCCceEEEEEeccC------CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCC
Q 011995          238 LCKLLGFHARDGSDQRMLIYERLFH------GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS  311 (473)
Q Consensus       238 Iv~l~g~~~~~~~~~~~lV~E~~~~------gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlk  311 (473)
                      |.+++|+..++  ....+|+|.+.+      -+|.+++..    ..++. .....   +-.-..||-+++   |+.+|++
T Consensus        79 i~r~~G~veT~--~G~Glv~e~I~d~dG~~s~TL~~~l~~----~~~~~-~~~~~---L~~f~~~l~~~~---Iv~~dl~  145 (199)
T PF10707_consen   79 IPRFYGFVETN--LGLGLVVELIRDADGNISPTLEDYLKE----GGLTE-ELRQA---LDEFKRYLLDHH---IVIRDLN  145 (199)
T ss_pred             cccEeEEEecC--CceEEEEEEEECCCCCcCccHHHHHHc----CCccH-HHHHH---HHHHHHHHHHcC---CeecCCC
Confidence            99999999887  677899998633      257777732    23554 33333   334457777887   9999999


Q ss_pred             CCceeeCCC--C--cEEEec-cCCCc
Q 011995          312 TANIQIDKD--F--SAKLSG-YGCAG  332 (473)
Q Consensus       312 p~NILl~~~--~--~vkl~D-FGla~  332 (473)
                      |.||++..+  +  .+.|+| ||...
T Consensus       146 ~~NIv~~~~~~~~~~lvlIDG~G~~~  171 (199)
T PF10707_consen  146 PHNIVVQRRDSGEFRLVLIDGLGEKE  171 (199)
T ss_pred             cccEEEEecCCCceEEEEEeCCCCcc
Confidence            999999533  2  477777 55443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.93  E-value=0.00012  Score=69.08  Aligned_cols=32  Identities=16%  Similarity=0.382  Sum_probs=26.6

Q ss_pred             CCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       302 ~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++.++|+|+.+.|||++.++..-|+||+.+..
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            34589999999999999776677999997643

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=3.3e-05  Score=84.96  Aligned_cols=198  Identities=17%  Similarity=0.217  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhCCCCCcccceeeeecCCCCc--eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Q 011995          223 FINDVNTLASLQHPNLCKLLGFHARDGSDQ--RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE  300 (473)
Q Consensus       223 ~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~--~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~  300 (473)
                      ..-|+..+..+.|+|++.+++|....-...  ..+.-+++..-++...+.   .-..++..+...+..++..||.|+|+.
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q---~v~~i~~~~~r~~~~~~~~GL~~~h~~  305 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQ---SVGSIPLETLRILHQKLLEGLAYLHSL  305 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHh---hccccCHHHHHHHHHHHhhhHHHHHHh
Confidence            345677788889999999998876542111  223347777778877773   345688899999999999999999998


Q ss_pred             CCCceeecCCCCC---ceeeCCCCcEEEe--ccCCCcccCCCCccCc-ccccccCChhhhhcCCCCC--cCCchHHHHHH
Q 011995          301 GPFQAMYNEFSTA---NIQIDKDFSAKLS--GYGCAGHIPETDISNS-SVAAANLSVETLERGLLTP--KSNVWSFGIVL  372 (473)
Q Consensus       301 ~~~~ivHrDlkp~---NILl~~~~~vkl~--DFGla~~~~~~~~~~~-~~t~~y~aPE~~~~~~~s~--~sDvwSlGvvl  372 (473)
                      .   ..|.-+..+   +...+..+.+.++  ||+............. ..+..+.++|......+..  ..|+|.+|..+
T Consensus       306 ~---l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~  382 (1351)
T KOG1035|consen  306 S---LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLL  382 (1351)
T ss_pred             c---cceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHH
Confidence            6   666655555   4445666777777  8988877654433322 3445677888776555444  47999999999


Q ss_pred             HHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          373 LELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       373 ~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                      ..+..|..+-.......                   .++        +........+...+|+..++++|+++.+++...
T Consensus       383 ~~~~~~~~i~~~~~~~~-------------------~~l--------~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~  435 (1351)
T KOG1035|consen  383 LQLSQGEDISEKSAVPV-------------------SLL--------DVLSTSELLDALPKCLDEDSEERLSALELLTHP  435 (1351)
T ss_pred             hhhhhcCcccccccchh-------------------hhh--------ccccchhhhhhhhhhcchhhhhccchhhhhhch
Confidence            99998865432211000                   000        111112567889999999999999999998765


Q ss_pred             H
Q 011995          453 D  453 (473)
Q Consensus       453 ~  453 (473)
                      -
T Consensus       436 f  436 (1351)
T KOG1035|consen  436 F  436 (1351)
T ss_pred             h
Confidence            4

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.87  E-value=0.00012  Score=76.17  Aligned_cols=141  Identities=15%  Similarity=0.061  Sum_probs=85.6

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh------------------------------hhH------hHH
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ------------------------------GVK------EFI  224 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~------~~~  224 (473)
                      ..||..+.|.||+|++.++.    .+++||-+-.-...                              ..+      .|.
T Consensus       167 ~piaaASlaQVhrA~L~~G~----~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~  242 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGE----DVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFT  242 (538)
T ss_pred             chhhhcchhheEEEEecCCC----EEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchH
Confidence            68999999999999998843    34455433221110                              011      133


Q ss_pred             HHHHHHHhC----CCCC------cccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011995          225 NDVNTLASL----QHPN------LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGL  294 (473)
Q Consensus       225 ~Ei~~l~~l----~Hpn------Iv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L  294 (473)
                      +|.+...++    .|-+      |.+++-.+    .....|+||||+|.-+.|.-.-.  ...++...+..-+.++..  
T Consensus       243 ~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~----st~RVLtME~~~G~~i~Dl~~i~--~~gi~~~~i~~~l~~~~~--  314 (538)
T KOG1235|consen  243 KEAKNAERFRENFKDFSLLTYVLVPKVYWDL----STKRVLTMEYVDGIKINDLDAID--KRGISPHDILNKLVEAYL--  314 (538)
T ss_pred             HHHHhHHHHHHHHHhcccccceeCCeehhhc----CcceEEEEEecCCccCCCHHHHH--HcCCCHHHHHHHHHHHHH--
Confidence            344333333    3545      33343222    15689999999999887664322  223555544444443322  


Q ss_pred             HHhhhcCCCceeecCCCCCceeeC----CCCcEEEeccCCCcccCC
Q 011995          295 TFLHEEGPFQAMYNEFSTANIQID----KDFSAKLSGYGCAGHIPE  336 (473)
Q Consensus       295 ~yLH~~~~~~ivHrDlkp~NILl~----~~~~vkl~DFGla~~~~~  336 (473)
                      .-+-..|   ++|+|=.|.||++.    .++.+.+.|||+...+..
T Consensus       315 ~qIf~~G---ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  315 EQIFKTG---FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HHHHhcC---CccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            2223345   99999999999998    367899999999876643

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.86  E-value=0.00034  Score=63.59  Aligned_cols=128  Identities=13%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             cccccCcceeecCC-ceEEEEEECCCCeeeeEEEEEEEec---CCC----------C-------hhhHhHHHHHHHHHhC
Q 011995          175 HNFFSDRCISEGLS-SVMYRASFGDDASTSKKFEATVTRL---NPS----------S-------QGVKEFINDVNTLASL  233 (473)
Q Consensus       175 ~~f~~~~~lG~G~~-g~Vy~~~~~~~~~~~~~~~~~~~~~---~~~----------~-------~~~~~~~~Ei~~l~~l  233 (473)
                      .+++..+.||.|.- |.||++...+.     .+++|+.+.   ...          .       ....-|..|.....+|
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g~-----~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRL  111 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDGR-----IYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRL  111 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECCe-----EEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHH
Confidence            67888899999999 99999987665     444555111   100          0       1123577888877776


Q ss_pred             ---CCCCc--ccceeeeecCC----------------CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHH
Q 011995          234 ---QHPNL--CKLLGFHARDG----------------SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQ  292 (473)
Q Consensus       234 ---~HpnI--v~l~g~~~~~~----------------~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~  292 (473)
                         .+.++  |+++||..-..                .....||.||++...            .+    ...-+.+|.+
T Consensus       112 ke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~------------~~----~~~~~~~~~~  175 (207)
T PF13095_consen  112 KEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP------------PL----QIRDIPQMLR  175 (207)
T ss_pred             HhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc------------cc----chhHHHHHHH
Confidence               45566  99999974331                123467888765532            11    2234567788


Q ss_pred             HHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       293 ~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      -|..+|..+   |+-+|+++.|..     .-||+|||.+
T Consensus       176 dl~~~~k~g---I~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  176 DLKILHKLG---IVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHHHHHHCC---eeeccCcccccc-----CCEEEecccC
Confidence            899999999   999999999987     4589999864

>PRK10593 hypothetical protein; Provisional

Probab=97.71  E-value=0.00054  Score=67.06  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC---CCcccceeeeecCC-CCceEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH---PNLCKLLGFHARDG-SDQRML  255 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H---pnIv~l~g~~~~~~-~~~~~l  255 (473)
                      ...||.|..+.||+....++..     .+|+.+   .......+.+|.+.|+.+.-   -.+.++++++.... .+..+|
T Consensus        19 ~~~i~~G~~~~vy~~~~~~~~~-----~~k~~~---~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~L   90 (297)
T PRK10593         19 VECISEQPYAALWALYDSQGNP-----MPLMAR---SFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVL   90 (297)
T ss_pred             eeecCCccceeEEEEEcCCCCE-----EEEEec---ccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEE
Confidence            3679999999999986544431     123221   11123578899999998843   35778888775421 255799


Q ss_pred             EEEeccCCCh
Q 011995          256 IYERLFHGSL  265 (473)
Q Consensus       256 V~E~~~~gsL  265 (473)
                      |||+++++++
T Consensus        91 VmE~i~G~~~  100 (297)
T PRK10593         91 LLERLRGVSV  100 (297)
T ss_pred             EEeccCCEec
Confidence            9999988765

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.64  E-value=0.00065  Score=63.91  Aligned_cols=30  Identities=27%  Similarity=0.332  Sum_probs=26.2

Q ss_pred             CceeecCCCCCceeeCC-CCcEEEeccCCCc
Q 011995          303 FQAMYNEFSTANIQIDK-DFSAKLSGYGCAG  332 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~-~~~vkl~DFGla~  332 (473)
                      ..++|+|+.+.|||++. ++.+.|+||-.+.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            45999999999999998 5789999997664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.47  E-value=0.0016  Score=63.50  Aligned_cols=155  Identities=14%  Similarity=0.080  Sum_probs=84.6

Q ss_pred             HHHHHhccccc-----CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC--cccc
Q 011995          169 EVAAACHNFFS-----DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN--LCKL  241 (473)
Q Consensus       169 el~~~~~~f~~-----~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn--Iv~l  241 (473)
                      ++....+.|..     .+.|..|....+|+....++.     +.+++..  .  .....+..|++++..+.+.+  +.++
T Consensus         3 ~l~~~l~~y~~~~~~~i~~i~~G~~n~~y~v~~~~~~-----~vLr~~~--~--~~~~~~~~e~~~l~~L~~~g~~vp~~   73 (296)
T cd05153           3 ELASFLADYDLGELLSFEGISAGIENTNYFVTTDSGR-----YVLTLFE--K--VSAEELPFFLALLDHLAERGLPVPRP   73 (296)
T ss_pred             HHHHHHHHcCCCchhheecccCccccceEEEEeCCCc-----EEEEEcC--C--CChHhccHHHHHHHHHHHCCCCCCcc
Confidence            44454455543     356777777899998654332     2233322  1  23456777888888874332  4444


Q ss_pred             eeee----ecCCCCceEEEEEeccCCChhh----h----------hhcCCC--------CCCCCHHHHH----------H
Q 011995          242 LGFH----ARDGSDQRMLIYERLFHGSLDR----L----------IYGRSD--------GPPIDWNTRV----------K  285 (473)
Q Consensus       242 ~g~~----~~~~~~~~~lV~E~~~~gsL~~----~----------l~~~~~--------~~~l~~~~~~----------~  285 (473)
                      +...    .....+..++|++|++|..+..    .          ++....        .....|....          .
T Consensus        74 i~~~~g~~~~~~~~~~~~l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (296)
T cd05153          74 IADRDGEYLSELAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAE  153 (296)
T ss_pred             ccCCCCcEeeeeCCceEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHH
Confidence            3311    0011245689999998876532    0          111000        0111222211          0


Q ss_pred             HHHHHHHHHHHhhhc----CCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          286 IALCAAQGLTFLHEE----GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       286 i~~~i~~~L~yLH~~----~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ....+...+.++...    -+..++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         154 DRALLADELARQDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            111223344554431    12359999999999999998778899998764

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.44  E-value=0.00098  Score=63.70  Aligned_cols=137  Identities=16%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhh-HhHHHHHHHHHhCCCCCcc-cceeeeecCCCCceEEEEEec
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQHPNLC-KLLGFHARDGSDQRMLIYERL  260 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ei~~l~~l~HpnIv-~l~g~~~~~~~~~~~lV~E~~  260 (473)
                      +..|-.+.+|+....+     +.+.+++  ........ -...+|..+++.+....++ +++++.  .    -++||||+
T Consensus         4 ~~~G~tn~~y~~~~~~-----~~~vlR~--~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~--~----~~~v~e~i   70 (256)
T TIGR02721         4 LSGGLTNRSWRIEHPG-----ISFVWRP--QSPVCKALGVDRQREYQILQALSALGLAPKPILVN--E----HWLLVEWL   70 (256)
T ss_pred             CCCcCcCCeEEEEeCC-----ccEEEee--CCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe--C----CEEEEEec
Confidence            4567778899886322     2222222  11111111 2457899999998654443 444332  1    26899999


Q ss_pred             cCCChhhh-----------------hhcCC-CCCCCCHHHH-HHHHHHH---------HHHHHHhhhc-----CCCceee
Q 011995          261 FHGSLDRL-----------------IYGRS-DGPPIDWNTR-VKIALCA---------AQGLTFLHEE-----GPFQAMY  307 (473)
Q Consensus       261 ~~gsL~~~-----------------l~~~~-~~~~l~~~~~-~~i~~~i---------~~~L~yLH~~-----~~~~ivH  307 (473)
                      +|..+...                 ||... ...+++.... ..+..++         ...+..+-..     .++.++|
T Consensus        71 ~G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H  150 (256)
T TIGR02721        71 EGEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLH  150 (256)
T ss_pred             cCcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeec
Confidence            88765421                 11111 1122222211 1111111         1112222111     1235899


Q ss_pred             cCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          308 NEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       308 rDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +|+.+.||++++++ +.|+||..+..
T Consensus       151 ~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       151 MDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             CCCCcCcEEEeCCC-CEEEeccccCc
Confidence            99999999999887 78999987653

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.30  E-value=0.008  Score=59.09  Aligned_cols=160  Identities=13%  Similarity=0.090  Sum_probs=86.6

Q ss_pred             CCHHHHHHHhcccccC-----cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC--
Q 011995          165 FPLDEVAAACHNFFSD-----RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN--  237 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~-----~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn--  237 (473)
                      .+.++|......|...     +.++.|....+|+....++.     +.+++....   .....+..|++++..|....  
T Consensus         7 ~~~~~l~~~l~~y~~~~~~~i~~~~~G~~n~~y~v~t~~~~-----~vLK~~~~~---~~~~~i~~e~~~l~~L~~~g~p   78 (307)
T TIGR00938         7 VSDEEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVGR-----YILTLYEKR---VKAEELPFFLALTTHLAARGLP   78 (307)
T ss_pred             CCHHHHHHHHHhcCCCCceeccccCCccccceEEEEeCCCc-----EEEEEecCC---CCHHHHHHHHHHHHHHHHCCCC
Confidence            4557777776667543     45667777889998643332     223332211   12345566777777774222  


Q ss_pred             cccceeee----ecCCCCceEEEEEeccCCChhh--------------hhhcCCCC--C-------CCCHHHHH------
Q 011995          238 LCKLLGFH----ARDGSDQRMLIYERLFHGSLDR--------------LIYGRSDG--P-------PIDWNTRV------  284 (473)
Q Consensus       238 Iv~l~g~~----~~~~~~~~~lV~E~~~~gsL~~--------------~l~~~~~~--~-------~l~~~~~~------  284 (473)
                      +.+++...    .....+..++|++|++|..+..              .++....+  .       .-.|....      
T Consensus        79 vp~~i~t~~g~~~~~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  158 (307)
T TIGR00938        79 VPKPVKSRDGRQLSTLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEA  158 (307)
T ss_pred             CCccccCCCCCeehhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhc
Confidence            34443311    1111256789999998855421              01111110  0       01121110      


Q ss_pred             ------HHHHHHHHHHHHhhh----cCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          285 ------KIALCAAQGLTFLHE----EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       285 ------~i~~~i~~~L~yLH~----~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                            .....+...++++..    ..+..++|+|+.+.||+++.++.+.|+||+.+.
T Consensus       159 ~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       159 APQLEAHMGAELDKELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence                  011123344555542    223469999999999999998877899998764

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.26  E-value=3.7e-05  Score=86.37  Aligned_cols=160  Identities=10%  Similarity=-0.010  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q 011995          223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEG  301 (473)
Q Consensus       223 ~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~  301 (473)
                      ...|...++...|+++.....-.........+.+++|+.+|.+.+.|.+.. ..+.++..-+.....+.+....-+|...
T Consensus      1276 ll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~t 1355 (2724)
T KOG1826|consen 1276 LLSERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLT 1355 (2724)
T ss_pred             hhhhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcc
Confidence            344555666678998887765444444567789999999999999986532 2334444444444444355555555433


Q ss_pred             C--CceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-C-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc
Q 011995          302 P--FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-D-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT  377 (473)
Q Consensus       302 ~--~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt  377 (473)
                      .  -..+|+++|+.|.+|..+..+|++++|+.+..... . .....+++.|+.++..+.-.++.++|+|..|+.+|++.-
T Consensus      1356 nlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~ 1435 (2724)
T KOG1826|consen 1356 NLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSD 1435 (2724)
T ss_pred             cCCccchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence            1  13689999999999999999999999999843322 1 233466778999999988889999999999999999998


Q ss_pred             CCCCC
Q 011995          378 GRKNL  382 (473)
Q Consensus       378 G~~p~  382 (473)
                      |..+|
T Consensus      1436 ~n~~f 1440 (2724)
T KOG1826|consen 1436 GNAYF 1440 (2724)
T ss_pred             ccHHH
Confidence            88776

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.22  E-value=0.0033  Score=61.61  Aligned_cols=31  Identities=19%  Similarity=0.193  Sum_probs=26.9

Q ss_pred             CCceeecCCCCCceeeCCC----CcEEEeccCCCc
Q 011995          302 PFQAMYNEFSTANIQIDKD----FSAKLSGYGCAG  332 (473)
Q Consensus       302 ~~~ivHrDlkp~NILl~~~----~~vkl~DFGla~  332 (473)
                      +..++|+|+.+.|||++.+    +.+.++||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            4469999999999999985    889999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK05231 homoserine kinase; Provisional

Probab=97.06  E-value=0.018  Score=56.82  Aligned_cols=30  Identities=10%  Similarity=0.065  Sum_probs=25.8

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ..+||+|+.+.|||++.+...-|+||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            359999999999999977666899999764

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.99  E-value=0.0092  Score=60.50  Aligned_cols=77  Identities=14%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEE----ecCCC--ChhhHhHHHHHHHHHhCC---CCCcccceeeeecCCCC
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVT----RLNPS--SQGVKEFINDVNTLASLQ---HPNLCKLLGFHARDGSD  251 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~~~~~~~  251 (473)
                      +.||.|.+..||++...++.   +.+.+|.-    +....  .....++..|.+.|..+.   -.++.+++.+.  .  +
T Consensus        32 ~elggGn~N~VyrV~~~~g~---~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--~--~  104 (401)
T PRK09550         32 REIGDGNLNLVFRVSDTEGG---KSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--E--E  104 (401)
T ss_pred             eEcCCCceEEEEEEEeCCCC---eEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--C--C
Confidence            57899999999999876542   11112221    11101  123456777888888762   24566776542  2  5


Q ss_pred             ceEEEEEeccCCC
Q 011995          252 QRMLIYERLFHGS  264 (473)
Q Consensus       252 ~~~lV~E~~~~gs  264 (473)
                      ..++||||+++..
T Consensus       105 ~~~lVME~L~~~~  117 (401)
T PRK09550        105 LAVTVMEDLSDHK  117 (401)
T ss_pred             CCEEEEecCCCcc
Confidence            5789999997643

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.77  E-value=0.024  Score=54.77  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=25.6

Q ss_pred             CceeecCCCCCceeeCCCCc-EEEeccCCCcc
Q 011995          303 FQAMYNEFSTANIQIDKDFS-AKLSGYGCAGH  333 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~-vkl~DFGla~~  333 (473)
                      +.++|+|+.+.|||++.++. .-|+||+.+..
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            35899999999999997554 56999998754

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PLN02236 choline kinase

Probab=96.69  E-value=0.023  Score=56.86  Aligned_cols=144  Identities=13%  Similarity=0.197  Sum_probs=77.0

Q ss_pred             cceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcc-cceeeeecCCCCceEEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC-KLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv-~l~g~~~~~~~~~~~lV~E  258 (473)
                      ..|-.|-...+|+..+.++.. ..+.+.+++..  ......-.-.+|+.++..+..-++. ++++++. .   .  .|+|
T Consensus        42 ~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g--~~t~~~idR~~E~~~~~~l~~~gl~P~~~~~~~-~---g--~v~e  113 (344)
T PLN02236         42 IPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYG--EGVELFFDRDDEIRTFECMSRHGQGPRLLGRFP-N---G--RVEE  113 (344)
T ss_pred             EEcCCcccceeEEEEeCCCCCCCCCeEEEEEcc--CCCCeeechHHHHHHHHHHHHcCCCCceEEEEC-C---c--eEEE
Confidence            345457778899987643221 12333333222  1222222336799999988544444 5555542 2   1  5899


Q ss_pred             eccCCChhhh-----------------hhcCC-CCC--CCCHHHHHHHHHHH-----------------HHHHHHh----
Q 011995          259 RLFHGSLDRL-----------------IYGRS-DGP--PIDWNTRVKIALCA-----------------AQGLTFL----  297 (473)
Q Consensus       259 ~~~~gsL~~~-----------------l~~~~-~~~--~l~~~~~~~i~~~i-----------------~~~L~yL----  297 (473)
                      |+++.+|...                 +|... ...  ...|..+..+..++                 ...+..|    
T Consensus       114 fi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~  193 (344)
T PLN02236        114 FIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKEL  193 (344)
T ss_pred             eeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHh
Confidence            9987676421                 11111 011  12233333333222                 1111122    


Q ss_pred             hh-cCCCceeecCCCCCceeeCC-CCcEEEeccCCCc
Q 011995          298 HE-EGPFQAMYNEFSTANIQIDK-DFSAKLSGYGCAG  332 (473)
Q Consensus       298 H~-~~~~~ivHrDlkp~NILl~~-~~~vkl~DFGla~  332 (473)
                      .. ..+..++|+|+++.|||+++ ++.+.|+||..+.
T Consensus       194 ~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        194 SGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             cccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence            21 12335899999999999986 4789999998765

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.61  E-value=0.029  Score=55.01  Aligned_cols=32  Identities=13%  Similarity=0.081  Sum_probs=28.5

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +.++|+|+.+.||+++.++-+=|.||+++..-
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEeccccccC
Confidence            47999999999999999888999999988653

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.56  E-value=0.0025  Score=65.02  Aligned_cols=166  Identities=24%  Similarity=0.361  Sum_probs=93.6

Q ss_pred             hHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 011995          220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE  299 (473)
Q Consensus       220 ~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~  299 (473)
                      ..++......++.+.|+|+...+.+..... ....+|+|++ +.||++.+..+.    +-..          +++    .
T Consensus        26 s~~ilgr~~~lktl~~~~l~~yl~~~r~~~-~r~IVV~e~~-~~Sled~~~~~~----l~~~----------s~~----~   85 (725)
T KOG1093|consen   26 SIQILGRFQYLKSLQHDNLCQYLDFSRGKH-ERVIVVMEHY-TMSLEDILKTGN----LKDE----------SLL----A   85 (725)
T ss_pred             HHHHhhhhHHHHhhcCccceeeEeeecCcc-ceEEEEehhh-ccchHHHHHhcc----cchh----------hhc----c
Confidence            356777888999999999999998765543 5588899998 669999884321    1100          111    1


Q ss_pred             cCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCC
Q 011995          300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR  379 (473)
Q Consensus       300 ~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~  379 (473)
                      ++   +.|     -|++       +++|    .+....             |-     ...+++||||+|.++.|+.-|.
T Consensus        86 ~~---~~~-----~~~~-------~~td----~~~t~~-------------~~-----~~~pKsdVwsl~~i~~el~L~~  128 (725)
T KOG1093|consen   86 HG---VLH-----LNII-------YITD----HFLTKY-------------PS-----PIGPKSDVWSLGFIILELYLGI  128 (725)
T ss_pred             cc---cce-----ehhh-------hccc----cccccC-------------CC-----CCCcchhhhhHHHHHHHHHHhh
Confidence            11   222     1222       2222    000000             00     0124999999999999999998


Q ss_pred             CCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHH
Q 011995          380 KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI  448 (473)
Q Consensus       380 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei  448 (473)
                      .-+......+....+.   .+..++.....+.-..   .+...+...+.++...|+-..|..||...++
T Consensus       129 ~l~~~~~~s~~l~~i~---k~~~~d~~~~~~a~e~---~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~  191 (725)
T KOG1093|consen  129 SLEAELTESEYLEILL---KYYTDDQELLSTAMEH---LIQLLADKKRLPLLKKCLWLEPIIRPLPMEL  191 (725)
T ss_pred             HHHHHHHHHHHHHHHH---HhccCchhHHHHHHHH---HHHHhhhHhHHHHhccCCccccccccchhHH
Confidence            7665443333222221   1111111111000000   1233556677889999999999988765443

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.32  E-value=0.027  Score=56.08  Aligned_cols=78  Identities=12%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             ceeecCCceEEEEEECCCC-eeeeEEEEEEEec-C-CCChhhHhHHHHHHHHHhCC--CC-CcccceeeeecCCCCceEE
Q 011995          182 CISEGLSSVMYRASFGDDA-STSKKFEATVTRL-N-PSSQGVKEFINDVNTLASLQ--HP-NLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~Ei~~l~~l~--Hp-nIv~l~g~~~~~~~~~~~l  255 (473)
                      .||.|....||++...++. ....+.+....+. . .-.-...+..-|.+.|+...  -| .+.++|.|  +.  +...+
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~--e~~~~   77 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DT--EMAVT   77 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--cc--cccee
Confidence            5799999999999864331 2222222222222 1 11233455566777777653  34 45556433  33  55679


Q ss_pred             EEEeccCC
Q 011995          256 IYERLFHG  263 (473)
Q Consensus       256 V~E~~~~g  263 (473)
                      |||+++..
T Consensus        78 vMEdL~~~   85 (370)
T TIGR01767        78 VMEDLSHH   85 (370)
T ss_pred             hHhhCccc
Confidence            99998553

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=96.14  E-value=0.01  Score=57.49  Aligned_cols=131  Identities=15%  Similarity=0.064  Sum_probs=85.9

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-----------------CCChh----hHhHHHHHHHHHhCC-
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-----------------PSSQG----VKEFINDVNTLASLQ-  234 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~----~~~~~~Ei~~l~~l~-  234 (473)
                      +..++.||-|--+-||.+...++...    ++|+-++.                 .+..|    +-...+|+..|+.|. 
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~G~~~----~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e  169 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEEGNPL----ILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYE  169 (465)
T ss_pred             hhhccccccccccceEEEecCCCCch----hHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHH
Confidence            56789999999999999986544321    12222211                 01111    123467888888884 


Q ss_pred             CC-CcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCC
Q 011995          235 HP-NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA  313 (473)
Q Consensus       235 Hp-nIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~  313 (473)
                      |. -+.+.+++      +..++|||++.+-.|...-+-      .+..+   +...+..-|--|-.+|   +||+|+.-=
T Consensus       170 ~gfpVPkpiD~------~RH~Vvmelv~g~Pl~~v~~v------~d~~~---ly~~lm~~Iv~la~~G---lIHgDFNEF  231 (465)
T KOG2268|consen  170 RGFPVPKPIDH------NRHCVVMELVDGYPLRQVRHV------EDPPT---LYDDLMGLIVRLANHG---LIHGDFNEF  231 (465)
T ss_pred             cCCCCCCcccc------cceeeHHHhhcccceeeeeec------CChHH---HHHHHHHHHHHHHHcC---ceecccchh
Confidence            32 24444443      456899999988877654311      12233   3334444566677888   999999999


Q ss_pred             ceeeCCCCcEEEeccC
Q 011995          314 NIQIDKDFSAKLSGYG  329 (473)
Q Consensus       314 NILl~~~~~vkl~DFG  329 (473)
                      ||++++++.++++||-
T Consensus       232 Nimv~dd~~i~vIDFP  247 (465)
T KOG2268|consen  232 NIMVKDDDKIVVIDFP  247 (465)
T ss_pred             eeEEecCCCEEEeech
Confidence            9999999999999995

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.13  E-value=0.044  Score=53.20  Aligned_cols=73  Identities=23%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC---CCCcccceeeeecCCCCceEEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ---HPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      .+.|+.|....+|+..- ++    +.+-+|+..    ......|..|.+-|+.|.   --.+.+++++....  +.-+||
T Consensus        22 ~~~v~GG~i~~a~~~~~-~~----~~~FvK~~~----~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~--~~~fLl   90 (288)
T PF03881_consen   22 IEPVSGGDINEAYRLDT-DG----GSYFVKVNS----ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYD--DDAFLL   90 (288)
T ss_dssp             EEEE--SSSSEEEEEET-TS-----EEEEEEEE----GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-S--SCCEEE
T ss_pred             eEecCCCChhheEEEEC-CC----ccEEEEecC----hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeec--CCceEE
Confidence            36788888999999862 21    233355443    233456788888888873   34566788776655  455899


Q ss_pred             EEeccCC
Q 011995          257 YERLFHG  263 (473)
Q Consensus       257 ~E~~~~g  263 (473)
                      |||++.+
T Consensus        91 le~l~~~   97 (288)
T PF03881_consen   91 LEFLEMG   97 (288)
T ss_dssp             EE-----
T ss_pred             EEeecCC
Confidence            9999776

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.08  E-value=0.02  Score=56.32  Aligned_cols=73  Identities=12%  Similarity=0.035  Sum_probs=57.1

Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...|++|++. |++|.- +      ....|.+...++.+.+..++-+..+-  +.-|||+.-.||||+ +|++.|+||-+
T Consensus       299 ~y~yl~~kdh-gt~is~-i------k~~~~~e~lsff~s~~sil~~lekkf--~fehrnlt~~niLId-~GnvtLIDfkl  367 (488)
T COG5072         299 LYLYLHFKDH-GTPISI-I------KADRSEEELSFFWSCISILDILEKKF--PFEHRNLTLDNILID-EGNVTLIDFKL  367 (488)
T ss_pred             eEEEEEEecC-Cceeee-e------ecccHHHHHHHHHHHHHHHhhhhhcC--Ccccccccccceeee-cCceEEEEeee
Confidence            5566777764 444432 2      12468899999999888888777765  599999999999999 99999999999


Q ss_pred             Cccc
Q 011995          331 AGHI  334 (473)
Q Consensus       331 a~~~  334 (473)
                      ++.-
T Consensus       368 sRl~  371 (488)
T COG5072         368 SRLS  371 (488)
T ss_pred             eecc
Confidence            9854

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=95.82  E-value=0.15  Score=50.60  Aligned_cols=144  Identities=13%  Similarity=0.122  Sum_probs=89.0

Q ss_pred             ccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCCh---h----------------h-HhHHHHHHHHHhCCCC
Q 011995          178 FSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQ---G----------------V-KEFINDVNTLASLQHP  236 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~---~----------------~-~~~~~Ei~~l~~l~Hp  236 (473)
                      .+..+|..|--+.||.++-.++.. +.|.+.--+..+..-..   +                + --...|+.-|.+++.-
T Consensus       147 ~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             ecccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            344788999999999998665544 33433333322221100   0                0 1124577777777654


Q ss_pred             CcccceeeeecCCCCceEEEEEeccCCCh-hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          237 NLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       237 nIv~l~g~~~~~~~~~~~lV~E~~~~gsL-~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                      .|.----+..    ...+|||+|+..... .-.|    ....++...+..+-.+++.-+.-|.+.+  .+||.||.--|+
T Consensus       227 GIP~PePIlL----k~hVLVM~FlGrdgw~aPkL----Kd~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LVHADLSEfN~  296 (520)
T KOG2270|consen  227 GIPCPEPILL----KNHVLVMEFLGRDGWAAPKL----KDASLSTSKARELYQQCVRIMRRLYQKC--RLVHADLSEFNL  296 (520)
T ss_pred             CCCCCCceee----ecceEeeeeccCCCCcCccc----ccccCChHHHHHHHHHHHHHHHHHHHHh--ceeccchhhhhh
Confidence            4321111111    234799999843221 1111    2335666677788888888888888887  699999999999


Q ss_pred             eeCCCCcEEEeccCCCc
Q 011995          316 QIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~  332 (473)
                      |+.. |.+.|+|-+-+.
T Consensus       297 Lyhd-G~lyiIDVSQSV  312 (520)
T KOG2270|consen  297 LYHD-GKLYIIDVSQSV  312 (520)
T ss_pred             eEEC-CEEEEEEccccc
Confidence            8864 588999987554

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=95.78  E-value=0.12  Score=51.42  Aligned_cols=30  Identities=7%  Similarity=0.145  Sum_probs=25.6

Q ss_pred             CceeecCCCCCceeeCC-CCcEEEeccCCCc
Q 011995          303 FQAMYNEFSTANIQIDK-DFSAKLSGYGCAG  332 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~-~~~vkl~DFGla~  332 (473)
                      ..++|+|+.+.|||+++ ++.++++||..|.
T Consensus       182 ~v~CHnDl~~~NiL~~~~~~~l~lID~EYag  212 (330)
T PLN02421        182 VVFAHNDLLSGNLMLNEDEGKLYFIDFEYGS  212 (330)
T ss_pred             eEEEECCCCcccEEEeCCCCcEEEEcccccC
Confidence            35899999999999975 5789999998764

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=95.55  E-value=0.025  Score=52.25  Aligned_cols=29  Identities=34%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             ceeecCCCCCceee-CCCCcEEEeccCCCc
Q 011995          304 QAMYNEFSTANIQI-DKDFSAKLSGYGCAG  332 (473)
Q Consensus       304 ~ivHrDlkp~NILl-~~~~~vkl~DFGla~  332 (473)
                      .++|+|+.+.|||+ +.++.++++||-.+.
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            48999999999999 888999999997664

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.45  E-value=0.49  Score=46.86  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             CCHHHHHHHhcccccC-----cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC--
Q 011995          165 FPLDEVAAACHNFFSD-----RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN--  237 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~-----~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn--  237 (473)
                      +.-.++..+...|..+     ..|.+ .-..||+....++..     .+++.+.  . ....++.-|++.|..+.-..  
T Consensus        11 ~~~~~~~~~l~~~~~g~~~~~~~l~s-~eN~~f~~~~~~g~~-----iLki~~~--~-~~~~~i~~el~~l~~La~~~i~   81 (331)
T COG2334          11 LTSDEAAAALEAYHYGLDGSLRGLNS-EENSNFRVQTEDGRY-----ILKIYRP--G-WTRAEIPFELALLQHLAERGIP   81 (331)
T ss_pred             cChHHHHHHHHhcCcCcccccccccc-ccCceEEEEecCCCe-----EEEEecC--C-CCHHHHHHHHHHHHHHHHcCCC
Confidence            3444555554444322     34444 456688887655543     2333332  2 45567778888888873222  


Q ss_pred             -ccc---ceeeeecCCCC--ceEEEEEeccCCChhh-h--------------hhcC----C--C---CCCCCHHH-----
Q 011995          238 -LCK---LLGFHARDGSD--QRMLIYERLFHGSLDR-L--------------IYGR----S--D---GPPIDWNT-----  282 (473)
Q Consensus       238 -Iv~---l~g~~~~~~~~--~~~lV~E~~~~gsL~~-~--------------l~~~----~--~---~~~l~~~~-----  282 (473)
                       .++   +-|-....-..  ..+-|++|++|..+.. .              |+..    .  .   .....|..     
T Consensus        82 v~~Pl~~~dG~~l~~~~~~~r~a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~  161 (331)
T COG2334          82 VPAPLPSLDGELLEALSGGPRPAALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRA  161 (331)
T ss_pred             CCCCccCCCcchhhhccCCceeEEEEEecCCcCcCCCCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcchh
Confidence             222   11211111113  7788899999887762 1              1110    0  0   11233431     


Q ss_pred             --------HHHHHHHHHHHHHHhhhcC----CC---ceeecCCCCCceeeCCCCc-EEEeccCCCc
Q 011995          283 --------RVKIALCAAQGLTFLHEEG----PF---QAMYNEFSTANIQIDKDFS-AKLSGYGCAG  332 (473)
Q Consensus       283 --------~~~i~~~i~~~L~yLH~~~----~~---~ivHrDlkp~NILl~~~~~-vkl~DFGla~  332 (473)
                              ......++...+..+.+.-    +.   .+||+|+.+.|||++.+.. +.++|||-+.
T Consensus       162 ~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         162 LLRLDLVEPEDLRAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             hhhhcccCchhhHHHHHHHHHHHHhhchhhCCcccceeeecCCCccceeEcCCCCeeeEEEccccc
Confidence                    0112334444455444433    22   2999999999999998874 8999999765

>PLN02756 S-methyl-5-thioribose kinase

Probab=95.36  E-value=0.29  Score=49.70  Aligned_cols=77  Identities=9%  Similarity=0.026  Sum_probs=43.7

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--ChhhHhHHHHHHHHHhCC---CCCcccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASLQ---HPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +.||.|....||+....++. .+.+.+....+....  .....+-..|.+.|..+.   ..++.+++.++.    +..++
T Consensus        38 ~eiggGn~N~VyrV~~~~~s-vVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de----d~~vl  112 (418)
T PLN02756         38 KEVGDGNLNFVYIVVSSSGS-FVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR----TMALI  112 (418)
T ss_pred             EEcCCCceeeEEEEEcCCcc-EEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC----CCCEE
Confidence            67899999999998753221 111111111111111  123344455666666653   247778887764    44678


Q ss_pred             EEEeccC
Q 011995          256 IYERLFH  262 (473)
Q Consensus       256 V~E~~~~  262 (473)
                      +|||+++
T Consensus       113 vME~L~~  119 (418)
T PLN02756        113 GMRYLEP  119 (418)
T ss_pred             EEeecCC
Confidence            9999976

>PTZ00384 choline kinase; Provisional

Probab=95.15  E-value=0.25  Score=50.12  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             cceeecCCceEEEEEECCCCe---eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcc-cceeeeecCCCCceEEE
Q 011995          181 RCISEGLSSVMYRASFGDDAS---TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC-KLLGFHARDGSDQRMLI  256 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv-~l~g~~~~~~~~~~~lV  256 (473)
                      ..|..|-...+|++...++..   ..+.+.+.+  ........-.-.+|++++..+...++. ++++.+.      -++|
T Consensus        56 ~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~--~g~~~~l~IdR~~E~~i~~~Ls~~glgP~l~~~f~------~g~l  127 (383)
T PTZ00384         56 KKMNNGITNQVYQATLVDGDKDRYPIKSVCIKK--SSTYNSLVIDNDLQYNIAKLLGDNNFGPKIIGRFG------DFTI  127 (383)
T ss_pred             EEeCCcccceEEEEEecCCCCCccccceEEEEe--ccCCCceEeccHHHHHHHHHHHhCCCCCeEEEecC------CEEE
Confidence            455568888999998654321   111121111  111222222335789999999665555 4555442      2599


Q ss_pred             EEeccCCChh
Q 011995          257 YERLFHGSLD  266 (473)
Q Consensus       257 ~E~~~~gsL~  266 (473)
                      +||++|-.|.
T Consensus       128 ~efIeGr~l~  137 (383)
T PTZ00384        128 QEWVEGNTMG  137 (383)
T ss_pred             EEEeccccCC
Confidence            9999987764

>PRK11768 serine/threonine protein kinase; Provisional

Probab=94.78  E-value=1.3  Score=43.88  Aligned_cols=29  Identities=14%  Similarity=0.132  Sum_probs=23.9

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ..+||+|+.+.|||++ + .+.|+||+.+..
T Consensus       196 ~~liHgD~h~~NvL~~-d-~~~iIDFDd~~~  224 (325)
T PRK11768        196 LLRLHGDCHPGNILWR-D-GPHFVDLDDARM  224 (325)
T ss_pred             ccceecCCCchhcccc-C-CcEEEeCCCCCC
Confidence            3589999999999995 4 578999997653

>PRK12396 5-methylribose kinase; Reviewed

Probab=94.72  E-value=0.1  Score=52.69  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=45.4

Q ss_pred             cceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCC-ChhhHhHHHHHHHHHhCC--CC-CcccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPS-SQGVKEFINDVNTLASLQ--HP-NLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~l~~l~--Hp-nIv~l~g~~~~~~~~~~~l  255 (473)
                      +.||.|.-..||++.... ......+.+....+...+ .-...+..-|.+.|+.+.  -| .+.++|.|  +.  +...+
T Consensus        35 ~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~--D~--e~~~~  110 (409)
T PRK12396         35 KEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLF--DS--VMNCC  110 (409)
T ss_pred             eEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEE--Cc--HHhhH
Confidence            578999999999998642 222222222222332211 334566667778887763  34 45556543  33  56678


Q ss_pred             EEEeccC
Q 011995          256 IYERLFH  262 (473)
Q Consensus       256 V~E~~~~  262 (473)
                      |||+++.
T Consensus       111 vMEdL~~  117 (409)
T PRK12396        111 VMEDLSD  117 (409)
T ss_pred             HHHhCcc
Confidence            9999854

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=94.52  E-value=0.2  Score=46.17  Aligned_cols=125  Identities=20%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             hHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 011995          220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE  299 (473)
Q Consensus       220 ~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~  299 (473)
                      ..-|..+..++.+++  .|+++..    ++.-.+-+++|+|.....               ... .++..=+..|.-.|+
T Consensus       102 ~~~y~nky~v~Armh--GilrL~N----Dn~~~yGvIlE~Cy~~~i---------------~~~-N~i~agi~~L~~fH~  159 (308)
T PF07387_consen  102 DALYFNKYRVFARMH--GILRLKN----DNNYKYGVILERCYKIKI---------------NFS-NFITAGIKDLMDFHS  159 (308)
T ss_pred             hhhhhhhhhHHHHhh--heeEeec----CCCceeEEEEeeccCccc---------------chh-HHHHHhHHHHHHhhc
Confidence            345678888888775  3777752    233567789998844211               111 122222467888895


Q ss_pred             cCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCC
Q 011995          300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR  379 (473)
Q Consensus       300 ~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~  379 (473)
                      .+ .+.+|+|-.|+||+-|..|.+||.|-+.--.  +        +..|.- +  .....+.++.+-+|=.-+++++..+
T Consensus       160 ~~-~~~lHGD~np~NiM~D~~G~lKlVDP~~Ll~--~--------~V~~vN-~--~Y~~lT~~aE~~~fv~s~l~~v~~~  225 (308)
T PF07387_consen  160 EN-QHCLHGDCNPDNIMCDKFGYLKLVDPVCLLE--N--------QVNMVN-I--EYESLTQEAEVKVFVKSCLKLVEKQ  225 (308)
T ss_pred             cC-CCeecCCCChhheeecCCCCEEecChhhhhh--h--------eeeEEe-e--eccccChHHHHHHHHHHHHHHHHHH
Confidence            43 2599999999999999999999999874311  0        111111 1  1223567777777777777777654


Q ss_pred             C
Q 011995          380 K  380 (473)
Q Consensus       380 ~  380 (473)
                      .
T Consensus       226 ~  226 (308)
T PF07387_consen  226 R  226 (308)
T ss_pred             h
Confidence            4

The function of this family is unknown.

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=93.42  E-value=0.34  Score=48.70  Aligned_cols=62  Identities=13%  Similarity=0.002  Sum_probs=44.5

Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID  318 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~  318 (473)
                      ....|+-+|+.|.++..++...    ..++..+.+++.-.+.++-.+--..  ..+|.|+.|.||++-
T Consensus       318 ~~~vl~E~~~~Gl~v~~~v~~~----~~pe~l~kkva~lg~~AllkMl~vD--NFvHaDlHPGNVlir  379 (565)
T KOG1236|consen  318 TDLVLVETYERGLSVLRFVKWK----SQPEALVKKVAKLGVNALLKMLIVD--NFVHADLHPGNVLIR  379 (565)
T ss_pred             ccceeeeeccccccHHhhhhcc----cChHHHHHHHHHHHHHHHHHHHHhh--cceecccCCCcEEEE
Confidence            3456777889899999888432    3455566777776677765554433  299999999999994

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.23  E-value=1.6  Score=40.66  Aligned_cols=46  Identities=24%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             hhHhHHHHHHHHHhCCCC---CcccceeeeecCCCCceEEEEEeccCCChh
Q 011995          219 GVKEFINDVNTLASLQHP---NLCKLLGFHARDGSDQRMLIYERLFHGSLD  266 (473)
Q Consensus       219 ~~~~~~~Ei~~l~~l~Hp---nIv~l~g~~~~~~~~~~~lV~E~~~~gsL~  266 (473)
                      ...-|..|+.-|..+.--   ++.+++.+  ....++.|+||||++-|.++
T Consensus        51 ~~~~f~AEa~gL~~la~s~ti~VP~vi~~--G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          51 QLSMFTAEADGLELLARSNTITVPKVIAV--GASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             hHHHHHHHHHHHHHHHhcCCccccceEEe--cCCCCeeEEEEeeccCCCCC
Confidence            345678888877777443   44555433  33448899999999987775

>PRK06148 hypothetical protein; Provisional

Probab=92.90  E-value=1.5  Score=50.40  Aligned_cols=30  Identities=33%  Similarity=0.388  Sum_probs=25.2

Q ss_pred             ceeecCCCCCceeeCCCC--cEE-EeccCCCcc
Q 011995          304 QAMYNEFSTANIQIDKDF--SAK-LSGYGCAGH  333 (473)
Q Consensus       304 ~ivHrDlkp~NILl~~~~--~vk-l~DFGla~~  333 (473)
                      .+||+|+.+.|||++.++  .+. |+|||.+..
T Consensus       204 ~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        204 QVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             ceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            599999999999999875  454 999997754

>PTZ00296 choline kinase; Provisional

Probab=92.68  E-value=1.5  Score=45.48  Aligned_cols=29  Identities=17%  Similarity=0.246  Sum_probs=23.9

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ..++|+|+-+.|||.+.++ ++++||-.|.
T Consensus       284 ~VfCHNDl~~~NiL~~~~~-l~LIDfEYAg  312 (442)
T PTZ00296        284 IVFCHNDLQENNIINTNKC-LRLIDFEYSG  312 (442)
T ss_pred             eeEEeCCCCccceeecCCC-EEEEeecccc
Confidence            4589999999999987554 9999997654

>PLN03150 hypothetical protein; Provisional

Probab=92.16  E-value=0.072  Score=57.71  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=19.4

Q ss_pred             CCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCCh
Q 011995           35 EPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSS   78 (473)
Q Consensus        35 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~   78 (473)
                      .+.+..|+|+|.+|+++.+++.|+.||   |++|+ +.|.+|.+
T Consensus       470 ~LdLs~N~lsg~iP~~l~~L~~L~~L~---Ls~N~-l~g~iP~~  509 (623)
T PLN03150        470 VLDLSYNSFNGSIPESLGQLTSLRILN---LNGNS-LSGRVPAA  509 (623)
T ss_pred             EEECCCCCCCCCCchHHhcCCCCCEEE---CcCCc-ccccCChH
Confidence            344444444444444444444444444   44444 44555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	473
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		8e-28
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		3e-27
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		7e-25
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-25
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		2e-23
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-23
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-22
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-21
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-13
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-12
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-12
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-11
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-11
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		6e-11
3a7f_A	303	Human Mst3 Kinase Length = 303		1e-10
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-10
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-10
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-10
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-10
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-10
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-10
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-10
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		3e-10
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-10
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-10
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		3e-10
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		3e-10
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		3e-10
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		5e-10
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		5e-10
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		6e-10
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		6e-10
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		6e-10
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		6e-10
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		6e-10
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		6e-10
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-10
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		7e-10
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		7e-10
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-09
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-09
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-09
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-09
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-09
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-09
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-09
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-09
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		1e-09
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-09
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		2e-09
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-09
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-09
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-09
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-09
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		2e-09
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		2e-09
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-09
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-09
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		3e-09
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		3e-09
3a4o_X	286	Lyn Kinase Domain Length = 286		3e-09
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		3e-09
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		4e-09
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		7e-09
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		1e-08
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		1e-08
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-08
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-08
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-08
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		3e-08
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		4e-08
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		4e-08
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		5e-08
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		5e-08
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		5e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		6e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-08
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		8e-08
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		9e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-07
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-07
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		1e-07
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		1e-07
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		1e-07
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		1e-07
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		2e-07
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		2e-07
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		2e-07
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		2e-07
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-07
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		2e-07
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		2e-07
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-07
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		3e-07
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		3e-07
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		3e-07
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-07
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-07
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		3e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		4e-07
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		4e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-07
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		4e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		4e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		4e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		4e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		5e-07
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		5e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		5e-07
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		5e-07
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		5e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		5e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		5e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		5e-07
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		5e-07
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		5e-07
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		5e-07
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		6e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		6e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		6e-07
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		7e-07
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		7e-07
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-07
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		8e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		8e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		8e-07
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		9e-07
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		9e-07
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		1e-06
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		1e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-06
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-06
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		1e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		2e-06
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		2e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		2e-06
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-06
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-06
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		3e-06
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		3e-06
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		3e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		3e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		3e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		3e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-06
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		4e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		4e-06
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		4e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		5e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		5e-06
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		5e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		5e-06
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		5e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		5e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		5e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		5e-06
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-06
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		7e-06
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		7e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		7e-06
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		7e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		7e-06
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-05
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		1e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-05
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		1e-05
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		1e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-05
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-05
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		1e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-05
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		1e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-05
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-05
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-05
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-05
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-05
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		2e-05
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-05
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		3e-05
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		3e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		3e-05
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-05
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		3e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		3e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		3e-05
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-05
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		4e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		4e-05
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		4e-05
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		4e-05
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		4e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		4e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		4e-05
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		4e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		4e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		5e-05
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		5e-05
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-05
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		5e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		5e-05
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-05
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		5e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		5e-05
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		5e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		6e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		6e-05
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		6e-05
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		6e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		6e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		7e-05
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		7e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		7e-05
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		7e-05
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		7e-05
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		7e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		8e-05
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		8e-05
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		8e-05
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		8e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		8e-05
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		9e-05
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		9e-05
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		9e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-04
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		1e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		1e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-04
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		1e-04
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		2e-04
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-04
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-04
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		2e-04
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-04
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		2e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-04
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		2e-04
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		2e-04
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-04
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-04
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-04
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-04
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-04
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-04
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-04
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-04
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-04
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		2e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		2e-04
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-04
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		2e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		2e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		2e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-04
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		2e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		2e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		2e-04
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		2e-04
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-04
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-04
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-04
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		2e-04
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-04
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		2e-04
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-04
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		2e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		2e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		2e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		2e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-04
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		3e-04
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		3e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		3e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		3e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		3e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		3e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-04
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		3e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		3e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		3e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		3e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		3e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		3e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		3e-04
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		3e-04
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		3e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		3e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		3e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		4e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		4e-04
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		4e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		4e-04
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		4e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		4e-04
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		4e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		4e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		4e-04
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		4e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		4e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		5e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		5e-04
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		5e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		5e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-04
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		5e-04
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		5e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		5e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		6e-04
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		7e-04
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		7e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		7e-04
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		7e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		7e-04
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		8e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		9e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		9e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 153/294 (52%), Gaps = 18/294 (6%)
Query: 166 PLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFIN 225
           PL ++  A +NF     I  G+   +Y+    D A  + K      R   SSQG++EF  
Sbjct: 30  PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK-----RRTPESSQGIEEFET 84
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP--PIDWNTR 283
           ++ TL+  +HP+L  L+GF   D  ++ +LIY+ + +G+L R +YG SD P   + W  R
Sbjct: 85  EIETLSFCRHPHLVSLIGFC--DERNEMILIYKYMENGNLKRHLYG-SDLPTMSMSWEQR 141
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD----I 339
           ++I + AA+GL +LH       ++ +  + NI +D++F  K++ +G +    E D     
Sbjct: 142 LEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLX 198
Query: 340 XXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP 399
                       E   +G LT KS+V+SFG+VL E+L  R  +    P+E  NL +W+  
Sbjct: 199 XVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVE 258
Query: 400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              ++ +L  I+DP L  +   ++ R   D A++CL     +RP+M  +  +L+
Sbjct: 259 S-HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 156/294 (53%), Gaps = 18/294 (6%)
Query: 166 PLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFIN 225
           PL ++  A +NF     I  G+   +Y+    D A  + K      R   SSQG++EF  
Sbjct: 30  PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK-----RRTPESSQGIEEFET 84
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP--PIDWNTR 283
           ++ TL+  +HP+L  L+GF   D  ++ +LIY+ + +G+L R +YG SD P   + W  R
Sbjct: 85  EIETLSFCRHPHLVSLIGFC--DERNEMILIYKYMENGNLKRHLYG-SDLPTMSMSWEQR 141
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIX 340
           ++I + AA+GL +LH       ++ +  + NI +D++F  K++ +G +     + +T + 
Sbjct: 142 LEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLX 198
Query: 341 XXXXXXXXXXX-ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP 399
                       E   +G LT KS+V+SFG+VL E+L  R  +    P+E  NL +W+  
Sbjct: 199 XVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVE 258
Query: 400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              ++ +L  I+DP L  +   ++ R   D A++CL     +RP+M  +  +L+
Sbjct: 259 S-HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLE 311

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 17/299 (5%)
Query: 163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGV 220
           + F L E+  A  NF +   +  G    +Y+    D    +      V RL    +  G 
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVA------VKRLKEERTQGGE 71
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG-PPID 279
            +F  +V  ++   H NL +L GF       +R+L+Y  + +GS+   +  R +  PP+D
Sbjct: 72  LQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLLVYPYMANGSVASCLRERPESQPPLD 129
Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
           W  R +IAL +A+GL +LH+    + ++ +   ANI +D++F A +  +G A  +   D 
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 189
Query: 340 XXXXXXXXXXXX---ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN--LV 394
                          E L  G  + K++V+ +G++LLEL+TG++  D      + +  L+
Sbjct: 190 HVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 249
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
            W +  L +  +L  ++D  L+G +  +    +  +AL C Q  P ERP M  +   L+
Sbjct: 250 DWVKGLLKEK-KLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 17/299 (5%)
Query: 163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GV 220
           + F L E+  A  NF +   +  G    +Y+    D    +      V RL       G 
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVA------VKRLKEERXQGGE 79
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG-PPID 279
            +F  +V  ++   H NL +L GF       +R+L+Y  + +GS+   +  R +  PP+D
Sbjct: 80  LQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLLVYPYMANGSVASCLRERPESQPPLD 137
Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
           W  R +IAL +A+GL +LH+    + ++ +   ANI +D++F A +  +G A  +   D 
Sbjct: 138 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 197
Query: 340 XXXXXXXXXXXX---ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN--LV 394
                          E L  G  + K++V+ +G++LLEL+TG++  D      + +  L+
Sbjct: 198 HVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 257
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
            W +  L +  +L  ++D  L+G +  +    +  +AL C Q  P ERP M  +   L+
Sbjct: 258 DWVKGLLKEK-KLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 26/286 (9%)
Query: 176 NFFSDRCIS-------EGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDV 227
           N F +R IS       EG   V+Y+    +     KK  A V   + +++ +K+ F  ++
Sbjct: 25  NNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMV---DITTEELKQQFDQEI 81
Query: 228 NTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDG-PPIDWNTRVK 285
             +A  QH NL +LLGF + DG D   L+Y  + +GSL DRL     DG PP+ W+ R K
Sbjct: 82  KVMAKCQHENLVELLGF-SSDGDD-LCLVYVYMPNGSLLDRL--SCLDGTPPLSWHMRCK 137
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXX 342
           IA  AA G+ FLHE      ++ +  +ANI +D+ F+AK+S +G A       +T +   
Sbjct: 138 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSR 194
Query: 343 XXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
                        RG +TPKS+++SFG+VLLE++TG   +D    +E + L+        
Sbjct: 195 IVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEH--REPQLLLDIKEEIED 252
Query: 403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           ++  +   +D ++       +   +  +A +CL ++ ++RP ++ +
Sbjct: 253 EEKTIEDYIDKKMNDA-DSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 26/286 (9%)
Query: 176 NFFSDRCIS-------EGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDV 227
           N F +R IS       EG   V+Y+    +     KK  A V   + +++ +K+ F  ++
Sbjct: 25  NNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMV---DITTEELKQQFDQEI 81
Query: 228 NTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDG-PPIDWNTRVK 285
             +A  QH NL +LLGF + DG D   L+Y  + +GSL DRL     DG PP+ W+ R K
Sbjct: 82  KVMAKCQHENLVELLGF-SSDGDD-LCLVYVYMPNGSLLDRL--SCLDGTPPLSWHMRCK 137
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXX 342
           IA  AA G+ FLHE      ++ +  +ANI +D+ F+AK+S +G A       +T +   
Sbjct: 138 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXR 194
Query: 343 XXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
                        RG +TPKS+++SFG+VLLE++TG   +D    +E + L+        
Sbjct: 195 IVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEH--REPQLLLDIKEEIED 252
Query: 403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           ++  +   +D ++       +   +  +A +CL ++ ++RP ++ +
Sbjct: 253 EEKTIEDYIDKKMNDA-DSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 26/286 (9%)
Query: 176 NFFSDRCIS-------EGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDV 227
           N F +R IS       EG   V+Y+    +     KK  A V   + +++ +K+ F  ++
Sbjct: 19  NNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMV---DITTEELKQQFDQEI 75
Query: 228 NTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDG-PPIDWNTRVK 285
             +A  QH NL +LLGF + DG D   L+Y  + +GSL DRL     DG PP+ W+ R K
Sbjct: 76  KVMAKCQHENLVELLGF-SSDGDD-LCLVYVYMPNGSLLDRL--SCLDGTPPLSWHMRCK 131
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXX 342
           IA  AA G+ FLHE      ++ +  +ANI +D+ F+AK+S +G A       +  +   
Sbjct: 132 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXR 188
Query: 343 XXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
                        RG +TPKS+++SFG+VLLE++TG   +D    +E + L+        
Sbjct: 189 IVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEH--REPQLLLDIKEEIED 246
Query: 403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           ++  +   +D ++       +   +  +A +CL ++ ++RP ++ +
Sbjct: 247 EEKTIEDYIDKKMNDA-DSTSVEAMYSVASQCLHEKKNKRPDIKKV 291

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 119/228 (52%), Gaps = 26/228 (11%)
Query: 176 NFFSDRCIS-------EGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDV 227
           N F +R IS       EG   V+Y+    +     KK  A V   + +++ +K+ F  ++
Sbjct: 16  NNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMV---DITTEELKQQFDQEI 72
Query: 228 NTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDG-PPIDWNTRVK 285
              A  QH NL +LLGF + DG D   L+Y    +GSL DRL     DG PP+ W+ R K
Sbjct: 73  KVXAKCQHENLVELLGF-SSDGDD-LCLVYVYXPNGSLLDRL--SCLDGTPPLSWHXRCK 128
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA----GHIPETDIXX 341
           IA  AA G+ FLHE      ++ +  +ANI +D+ F+AK+S +G A              
Sbjct: 129 IAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSR 185
Query: 342 XXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDS-RHPK 388
                     E L RG +TPKS+++SFG+VLLE++TG   +D  R P+
Sbjct: 186 IVGTTAYXAPEAL-RGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ 232

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 34/285 (11%)
Query: 179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHP 236
           SDR I +G   V+Y   + D A    + +  +  L+     Q V+ F+ +   +  L HP
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQN--RIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHP 82
Query: 237 NLCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT 295
           N+  L+G     +G    +L Y  + HG L + I      P +     +   L  A+G+ 
Sbjct: 83  NVLALIGIMLPPEGLPHVLLPY--MCHGDLLQFIRSPQRNPTV--KDLISFGLQVARGME 138
Query: 296 FLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------X 349
           +L E+   + ++ + +  N  +D+ F+ K++ +G A  I + +                 
Sbjct: 139 YLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWT 195
Query: 350 XXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL 409
             E+L+    T KS+VWSFG++L ELLT R     RH  +  +L      FLA   RL  
Sbjct: 196 ALESLQTYRFTTKSDVWSFGVLLWELLT-RGAPPYRH-IDPFDLTH----FLAQGRRL-- 247
Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
              PQ     P     ++  +  +C + +P+ RPT R +  E+++
Sbjct: 248 ---PQ-----PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQ 284

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 112/264 (42%), Gaps = 40/264 (15%)
Query: 200 ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER 259
           A+ +K  +  V  + P S  V+ F+ + N + +LQH  L KL   HA    +   +I E 
Sbjct: 34  ATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL---HAVVTKEPIYIITEF 90
Query: 260 LFHGSL-DRLIYGRSDGPP----IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTAN 314
           +  GSL D L        P    ID++ ++      A+G+ F+ +      ++ +   AN
Sbjct: 91  MAKGSLLDFLKSDEGSKQPLPKLIDFSAQI------AEGMAFIEQR---NYIHRDLRAAN 141
Query: 315 IQIDKDFSAKLSGYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIV 371
           I +      K++ +G A  I + +                E +  G  T KS+VWSFGI+
Sbjct: 142 ILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGIL 201
Query: 372 LLELLT-GRKNLDSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVAD 429
           L+E++T GR       +P+  R L +  R    ++C                     + +
Sbjct: 202 LMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENC------------------PEELYN 243
Query: 430 IALRCLQKEPSERPTMRSIFEELD 453
           I +RC +  P ERPT   I   LD
Sbjct: 244 IMMRCWKNRPEERPTFEYIQSVLD 267

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 32/260 (12%)
Query: 200 ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER 259
           A+ +K  +  V  + P S  V+ F+ + N + +LQH  L KL   HA    +   +I E 
Sbjct: 207 ATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL---HAVVTKEPIYIITEF 263
Query: 260 LFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID 318
           +  GSL  L + +SD G        +  +   A+G+ F+ +      ++ +   ANI + 
Sbjct: 264 MAKGSL--LDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVS 318
Query: 319 KDFSAKLSGYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLEL 375
                K++ +G A  I + +                E +  G  T KS+VWSFGI+L+E+
Sbjct: 319 ASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEI 378
Query: 376 LT-GRKNLDSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALR 433
           +T GR       +P+  R L +  R    ++C   L                   +I +R
Sbjct: 379 VTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELY------------------NIMMR 420
Query: 434 CLQKEPSERPTMRSIFEELD 453
           C +  P ERPT   I   LD
Sbjct: 421 CWKNRPEERPTFEYIQSVLD 440

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 114/273 (41%), Gaps = 27/273 (9%)
Query: 183 ISEGLSSVMYRASF-GDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL 241
           I  G    ++RA + G D +     E         ++ V EF+ +V  +  L+HPN+   
Sbjct: 45  IGAGSFGTVHRAEWHGSDVAVKILMEQDF-----HAERVNEFLREVAIMKRLRHPNIVLF 99
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           +G  A        ++ E L  GSL RL++       +D   R+ +A   A+G+ +LH   
Sbjct: 100 MG--AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN 157
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLL 359
           P   ++    + N+ +DK ++ K+  +G +     T +              E L     
Sbjct: 158 P-PIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPS 216
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
             KS+V+SFG++L EL T ++   + +P +    V     F      +   ++PQ     
Sbjct: 217 NEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVG----FKCKRLEIPRNLNPQ----- 267
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                  VA I   C   EP +RP+  +I + L
Sbjct: 268 -------VAAIIEGCWTNEPWKRPSFATIMDLL 293

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 36/257 (14%)
Query: 200 ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER 259
           A+ +K  +  V  + P S  V+ F+ + N + +LQH  L KL   HA    +   +I E 
Sbjct: 201 ATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL---HAVVTKEPIYIITEF 257
Query: 260 LFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID 318
           +  GSL  L + +SD G        +  +   A+G+ F+ +      ++ +   ANI + 
Sbjct: 258 MAKGSL--LDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVS 312
Query: 319 KDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT- 377
                K++ +G A    +  I            E +  G  T KS+VWSFGI+L+E++T 
Sbjct: 313 ASLVCKIADFGLARVGAKFPIKWTAP-------EAINFGSFTIKSDVWSFGILLMEIVTY 365
Query: 378 GRKNLDSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
           GR       +P+  R L +  R    ++C                     + +I +RC +
Sbjct: 366 GRIPYPGMSNPEVIRALERGYRMPRPENC------------------PEELYNIMMRCWK 407
Query: 437 KEPSERPTMRSIFEELD 453
             P ERPT   I   LD
Sbjct: 408 NRPEERPTFEYIQSVLD 424

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 183 ISEGLSSVMYRASF-GDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL 241
           I  G    ++RA + G D +     E         ++ V EF+ +V  +  L+HPN+   
Sbjct: 45  IGAGSFGTVHRAEWHGSDVAVKILMEQDF-----HAERVNEFLREVAIMKRLRHPNIVLF 99
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           +G  A        ++ E L  GSL RL++       +D   R+ +A   A+G+ +LH   
Sbjct: 100 MG--AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN 157
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLL 359
           P   ++ +  + N+ +DK ++ K+  +G +       +              E L     
Sbjct: 158 P-PIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPS 216
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
             KS+V+SFG++L EL T ++   + +P +    V     F      +   ++PQ     
Sbjct: 217 NEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVG----FKCKRLEIPRNLNPQ----- 267
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                  VA I   C   EP +RP+  +I + L
Sbjct: 268 -------VAAIIEGCWTNEPWKRPSFATIMDLL 293

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 35/266 (13%)
Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T K     +  L  +   +++   ++  L+    P + K  G + +
Sbjct: 32  KGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK 91
Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           D   +  +I E L  GS LD L  G     P+D      I     +GL +LH E   + +
Sbjct: 92  D--TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLHSE---KKI 141
Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I              E +++     K++
Sbjct: 142 HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKAD 201
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP +   L+  + P             P L+G +    +
Sbjct: 202 IWSLGITAIELARGEPPHSELHPMKVLFLIPKNNP-------------PTLEGNY----S 244
Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           + + +    CL KEPS RPT + + +
Sbjct: 245 KPLKEFVEACLNKEPSFRPTAKELLK 270

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 35/266 (13%)
Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T K     +  L  +   +++   ++  L+    P + K  G + +
Sbjct: 37  KGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK 96
Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           D   +  +I E L  GS LD L  G     P+D      I     +GL +LH E   + +
Sbjct: 97  D--TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLHSE---KKI 146
Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I              E +++     K++
Sbjct: 147 HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKAD 206
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP +   L+  + P             P L+G +    +
Sbjct: 207 IWSLGITAIELARGEPPHSELHPMKVLFLIPKNNP-------------PTLEGNY----S 249
Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           + + +    CL KEPS RPT + + +
Sbjct: 250 KPLKEFVEACLNKEPSFRPTAKELLK 275

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 21/265 (7%)
Query: 187 LSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHA 246
           +  V+ R +FG       + +    +   S    K FI ++  L+ + HPN+ KL G   
Sbjct: 13  VEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYG--- 69
Query: 247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
               +   L+ E    GSL  +++G    P       +   L  +QG+ +LH   P   +
Sbjct: 70  -ACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALI 128
Query: 307 YNEFSTANIQIDKDFSA-KLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNV 365
           + +    N+ +    +  K+  +G A  I +T +            E  E    + K +V
Sbjct: 129 HRDLKPPNLLLVAGGTVLKICDFGTACDI-QTHMTNNKGSAAWMAPEVFEGSNYSEKCDV 187
Query: 366 WSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR 425
           +S+GI+L E++T RK  D       R  + W+   + +  R      P L    P    +
Sbjct: 188 FSWGIILWEVITRRKPFDEIGGPAFR--IMWA---VHNGTR------PPLIKNLP----K 232
Query: 426 TVADIALRCLQKEPSERPTMRSIFE 450
            +  +  RC  K+PS+RP+M  I +
Sbjct: 233 PIESLMTRCWSKDPSQRPSMEEIVK 257

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 35/266 (13%)
Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T K     +  L  +   +++   ++  L+    P + K  G + +
Sbjct: 17  KGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK 76
Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           D   +  +I E L  GS LD L  G     P+D      I     +GL +LH E   + +
Sbjct: 77  D--TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLHSE---KKI 126
Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I              E +++     K++
Sbjct: 127 HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKAD 186
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP +   L+  + P             P L+G +    +
Sbjct: 187 IWSLGITAIELARGEPPHSELHPMKVLFLIPKNNP-------------PTLEGNY----S 229
Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           + + +    CL KEPS RPT + + +
Sbjct: 230 KPLKEFVEACLNKEPSFRPTAKELLK 255

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 35/266 (13%)
Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T K     +  L  +   +++   ++  L+    P + K  G + +
Sbjct: 17  KGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK 76
Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
           D   +  +I E L  GS LD L  G     P+D      I     +GL +LH E   + +
Sbjct: 77  D--TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLHSE---KKI 126
Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I              E +++     K++
Sbjct: 127 HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKAD 186
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP +   L+  + P             P L+G +    +
Sbjct: 187 IWSLGITAIELARGEPPHSELHPMKVLFLIPKNNP-------------PTLEGNY----S 229
Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           + + +    CL KEPS RPT + + +
Sbjct: 230 KPLKEFVEACLNKEPSFRPTAKELLK 255

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 21/265 (7%)
Query: 187 LSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHA 246
           +  V+ R +FG       + +    +   S    K FI ++  L+ + HPN+ KL G   
Sbjct: 12  VEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYG--- 68
Query: 247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
               +   L+ E    GSL  +++G    P       +   L  +QG+ +LH   P   +
Sbjct: 69  -ACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALI 127
Query: 307 YNEFSTANIQIDKDFSA-KLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNV 365
           + +    N+ +    +  K+  +G A  I +T +            E  E    + K +V
Sbjct: 128 HRDLKPPNLLLVAGGTVLKICDFGTACDI-QTHMTNNKGSAAWMAPEVFEGSNYSEKCDV 186
Query: 366 WSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR 425
           +S+GI+L E++T RK  D       R  + W+   + +  R      P L    P    +
Sbjct: 187 FSWGIILWEVITRRKPFDEIGGPAFR--IMWA---VHNGTR------PPLIKNLP----K 231
Query: 426 TVADIALRCLQKEPSERPTMRSIFE 450
            +  +  RC  K+PS+RP+M  I +
Sbjct: 232 PIESLMTRCWSKDPSQRPSMEEIVK 256

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 122/290 (42%), Gaps = 39/290 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRL-NPSSQGVKEFINDVNTLASLQHPNLC 239
           R + EG    ++ A   + + T  K    V  L +P+    K+F  +   L +LQH ++ 
Sbjct: 21  RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIV 80
Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-------DGPP------IDWNTRVKI 286
           K  G    DG D  ++++E + HG L++ +           DG P      +  +  + I
Sbjct: 81  KFYGV-CGDG-DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 138
Query: 287 ALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXX 346
           A   A G+ +L  +     ++ + +T N  +  +   K+  +G +  +  TD        
Sbjct: 139 ASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHT 195
Query: 347 XXXXX----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
                    E++     T +S+VWSFG++L E+ T  K               W +  L+
Sbjct: 196 MLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQ-------------PWFQ--LS 240
Query: 403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           +   +  I   ++  R P    + V D+ L C Q+EP +R  ++ I++ L
Sbjct: 241 NTEVIECITQGRVLER-PRVCPKEVYDVMLGCWQREPQQRLNIKEIYKIL 289

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 35  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 92
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 93  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 148
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 149 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 205
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 206 LESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 35  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 92
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 93  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 148
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 149 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 205
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 206 LESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 33  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 90
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 91  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 146
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 147 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 203
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 204 LESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 94  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 151
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 152 VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 207
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 208 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 264
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 265 LESLQTQKFTTKSDVWSFGVLLWELMT 291

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 36  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 93
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 94  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 149
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 150 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMA 206
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 207 LESLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 36  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 93
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 94  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 149
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 150 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 206
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 207 LESLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 40  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 97
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ F
Sbjct: 98  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKF 153
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 154 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 210
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 211 LESLQTQKFTTKSDVWSFGVLLWELMT 237

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 27  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 84
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 85  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 140
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 141 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 197
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 198 LESLQTQKFTTKSDVWSFGVLLWELMT 224

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 191 MYRASFGDDASTSKKFEATVTRLNPS---SQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           +YRA +  D    K       R +P    SQ ++    +    A L+HPN+  L G   +
Sbjct: 23  VYRAFWIGDEVAVKA-----ARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK 77
Query: 248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMY 307
           +      L+ E    G L+R++ G+   P I  N  V+IA    +G+ +LH+E     ++
Sbjct: 78  E--PNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIA----RGMNYLHDEAIVPIIH 131
Query: 308 NEFSTANIQI-----DKDFS---AKLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLL 359
            +  ++NI I     + D S    K++ +G A     T              E +   + 
Sbjct: 132 RDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMF 191
Query: 360 TPKSNVWSFGIVLLELLTG 378
           +  S+VWS+G++L ELLTG
Sbjct: 192 SKGSDVWSYGVLLWELLTG 210

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 33  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 90
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 91  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 146
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 147 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 203
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 204 LESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 32  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 89
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 90  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 145
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 146 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 202
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMT 229

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 34  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 91
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 92  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 147
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 148 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMA 204
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 205 LESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 34  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 91
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 92  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 147
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 148 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 204
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 205 LESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 35  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 92
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 93  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 148
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 149 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 205
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 206 LESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 30  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 87
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 88  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 143
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 144 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 200
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 201 LESLQTQKFTTKSDVWSFGVLLWELMT 227

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 35  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 92
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 93  VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 148
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 149 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 205
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 206 LESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 54  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 111
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 112 VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 167
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 168 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 224
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 225 LESLQTQKFTTKSDVWSFGVLLWELMT 251

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ--GVKEFINDVNTLASLQHPN 237
           +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +    HPN
Sbjct: 53  NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN 110
Query: 238 LCKLLGFHAR-DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           +  LLG   R +GS   +L Y +  HG L   I   +  P +     +   L  A+G+ +
Sbjct: 111 VLSLLGICLRSEGSPLVVLPYMK--HGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKY 166
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXX------XX 350
           L  +   + ++ + +  N  +D+ F+ K++ +G A  + + +                  
Sbjct: 167 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA 223
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLT 377
            E+L+    T KS+VWSFG++L EL+T
Sbjct: 224 LESLQTQKFTTKSDVWSFGVLLWELMT 250

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 49  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 105
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 106 DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIA 161
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 162 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 221
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 222 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 263
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 264 RPTFDYLRSVLEDF 277

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 34  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 90
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 91  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 146
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 147 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 206
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 207 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 248
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 249 RPTFDYLRSVLEDF 262

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 47  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 103
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 104 DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIA 159
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 160 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 219
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 220 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 261
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 262 RPTFDYLRSVLEDF 275

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 45  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 101
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 102 DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIA 157
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 158 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 217
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 218 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 259
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 260 RPTFDYLRSVLEDF 273

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 45  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 101
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 102 DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIA 157
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 158 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 217
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 218 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 259
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 260 RPTFDYLRSVLEDF 273

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 44  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 100
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 101 DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIA 156
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 157 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 216
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 217 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 258
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 259 RPTFDYLRSVLEDF 272

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 39  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 95
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 96  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 151
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 152 DFGLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 211
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 253
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 254 RPTFDYLRSVLEDF 267

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 48  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 104
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 105 DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIA 160
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 161 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 220
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 221 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 262
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 263 RPTFDYLRSVLEDF 276

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 23  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 83  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 138
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I ETD           
Sbjct: 139 IADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 240
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P+ RPT   I   L
Sbjct: 241 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLL 286

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 39  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 95
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 96  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 151
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 152 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 211
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 253
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 254 RPTFDYLRSVLEDF 267

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 41  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 97
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 98  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 153
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 154 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 213
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 214 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 255
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 256 RPTFDYLRSVLEDF 269

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 35  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 91
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++     ANI +    S K++
Sbjct: 92  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRNLRAANILVSDTLSCKIA 147
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 148 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 207
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 208 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 249
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 250 RPTFDYLRSVLEDF 263

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 23  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 83  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 138
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I ETD           
Sbjct: 139 IADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 240
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P  RPT   I   L
Sbjct: 241 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 286

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 39  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 95
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 96  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 151
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 152 DFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 211
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 253
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 254 RPTFDYLRSVLEDF 267

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 40  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 96
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 97  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 152
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 153 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 212
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 213 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 254
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 255 RPTFDYLRSVLEDF 268

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 33/254 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L   S     F+ + N +  LQH  L +L   +A    +   +I E + +GSL 
Sbjct: 39  KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL---YAVVTQEPIYIITEYMENGSLV 95
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +   S G  +  N  + +A   A+G+ F+ E      ++ +   ANI +    S K++
Sbjct: 96  DFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIA 151
Query: 327 GYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I + +                E +  G  T KS+VWSFGI+L E++T GR   
Sbjct: 152 DFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPY 211
Query: 383 DSR-HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE 441
               +P+  +NL +  R    D+C   L    +L                  C ++ P +
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------------------CWKERPED 253
Query: 442 RPT---MRSIFEEL 452
           RPT   +RS+ E+ 
Sbjct: 254 RPTFDYLRSVLEDF 267

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 22  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 81
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 82  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 137
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I ETD           
Sbjct: 138 IADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 194
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 195 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 239
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P  RPT   I   L
Sbjct: 240 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 285

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 20  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 79
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 80  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 135
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I ETD           
Sbjct: 136 IADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 192
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 193 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 237
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P  RPT   I   L
Sbjct: 238 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 283

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 103/253 (40%), Gaps = 28/253 (11%)
Query: 205 KFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGS 264
           +++  V  +   S    EF  +  T+  L HP L K  G  +++      ++ E + +G 
Sbjct: 32  QYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYP--IYIVTEYISNGC 89
Query: 265 LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
           L  L Y RS G  ++ +  +++     +G+ FL      Q ++ + +  N  +D+D   K
Sbjct: 90  L--LNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVK 144
Query: 325 LSGYGCAGHIPETDIXXXXXX---XXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRK 380
           +S +G   ++ +                  E       + KS+VW+FGI++ E+ + G+ 
Sbjct: 145 VSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKM 204
Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
             D                 L  +  + L +    +   P  A+ T+  I   C  + P 
Sbjct: 205 PYD-----------------LYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPE 247
Query: 441 ERPTMRSIFEELD 453
           +RPT + +   ++
Sbjct: 248 KRPTFQQLLSSIE 260

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 23  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 83  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 138
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I ETD           
Sbjct: 139 IADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 240
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P  RPT   I   L
Sbjct: 241 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 286

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 24  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 83
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 84  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 139
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++   +  N  +  DF+ K+  +G    I ETD           
Sbjct: 140 IADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 196
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 197 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 241
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P+ RPT   I   L
Sbjct: 242 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLL 287

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 23  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 83  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 138
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++   +  N  +  DF+ K+  +G    I ETD           
Sbjct: 139 IADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 240
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P+ RPT   I   L
Sbjct: 241 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLL 286

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L P +  V+ F+ + N + +LQH  L +L     R+  +   +I E +  GSL 
Sbjct: 39  KVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTRE--EPIYIITEYMAKGSL- 95
Query: 267 RLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
            L + +SD G  +     +  +   A+G+ ++  +     ++ +   AN+ + +    K+
Sbjct: 96  -LDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKI 151
Query: 326 SGYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT----- 377
           + +G A  I + +                E +  G  T KS+VWSFGI+L E++T     
Sbjct: 152 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIP 211
Query: 378 --GRKNLD 383
             GR N D
Sbjct: 212 YPGRTNAD 219

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +  V  L P +  V+ F+ + N + +LQH  L +L     ++  +   +I E +  GSL 
Sbjct: 38  KVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKE--EPIYIITEFMAKGSL- 94
Query: 267 RLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
            L + +SD G  +     +  +   A+G+ ++  +     ++ +   AN+ + +    K+
Sbjct: 95  -LDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKI 150
Query: 326 SGYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT----- 377
           + +G A  I + +                E +  G  T KSNVWSFGI+L E++T     
Sbjct: 151 ADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIP 210
Query: 378 --GRKNLD 383
             GR N D
Sbjct: 211 YPGRTNAD 218

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 52  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 106
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 107 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD 403
                   E L+    + +S++WS G+ L+E+  GR  +     KE+      SRP +A 
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKED------SRPPMAI 218
Query: 404 DCRLSLIMD---PQL-KGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
              L  I++   P+L  G F L+      D   +CL K P+ER  ++ + 
Sbjct: 219 FELLDYIVNEPPPKLPSGVFSLE----FQDFVNKCLIKNPAERADLKQLM 264

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 117/291 (40%), Gaps = 40/291 (13%)
Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASL 233
           HN    R + EG    ++ A   +      K    V  L  +S    K+F  +   L +L
Sbjct: 13  HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 72
Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP------------PIDWN 281
           QH ++ K  G       D  ++++E + HG L++ +  R+ GP             +  +
Sbjct: 73  QHEHIVKFYGVCVE--GDPLIMVFEYMKHGDLNKFL--RAHGPDAVLMAEGNPPTELTQS 128
Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXX 341
             + IA   A G+ +L  +     ++ + +T N  + ++   K+  +G +  +  TD   
Sbjct: 129 QMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 185
Query: 342 XXXXXXXXXX----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                         E++     T +S+VWS G+VL E+ T  K               W 
Sbjct: 186 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQ-------------PWY 232
Query: 398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           +  L+++  +  I   ++  R P    + V ++ L C Q+EP  R  ++ I
Sbjct: 233 Q--LSNNEVIECITQGRVLQR-PRTCPQEVYELMLGCWQREPHMRKNIKGI 280

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 56/276 (20%)
Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY-GR 272
           N S   +++ +++ N L  + HP++ KL G  ++DG    +LI E   +GSL   +   R
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP--LLLIVEYAKYGSLRGFLRESR 121
Query: 273 SDGP--------------------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST 312
             GP                     +     +  A   +QG+ +L E    + ++ + + 
Sbjct: 122 KVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLAA 178
Query: 313 ANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSF 368
            NI + +    K+S +G +  + E D                 E+L   + T +S+VWSF
Sbjct: 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSF 238
Query: 369 GIVLLELLT-GRKNLDSRHPKEERNLVK----WSRPFLADDCRLSLIMDPQLKGRFPLKA 423
           G++L E++T G        P+   NL+K      RP   D+C                  
Sbjct: 239 GVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERP---DNC------------------ 277
Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK 459
           +  +  + L+C ++EP +RP    I ++L++   ++
Sbjct: 278 SEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKR 313

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 56/276 (20%)
Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY-GR 272
           N S   +++ +++ N L  + HP++ KL G  ++DG    +LI E   +GSL   +   R
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP--LLLIVEYAKYGSLRGFLRESR 121
Query: 273 SDGP--------------------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST 312
             GP                     +     +  A   +QG+ +L E    + ++ + + 
Sbjct: 122 KVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MKLVHRDLAA 178
Query: 313 ANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSF 368
            NI + +    K+S +G +  + E D                 E+L   + T +S+VWSF
Sbjct: 179 RNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSF 238
Query: 369 GIVLLELLT-GRKNLDSRHPKEERNLVK----WSRPFLADDCRLSLIMDPQLKGRFPLKA 423
           G++L E++T G        P+   NL+K      RP   D+C                  
Sbjct: 239 GVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERP---DNC------------------ 277
Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK 459
           +  +  + L+C ++EP +RP    I ++L++   ++
Sbjct: 278 SEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKR 313

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 56/276 (20%)
Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY-GR 272
           N S   +++ +++ N L  + HP++ KL G  ++DG    +LI E   +GSL   +   R
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP--LLLIVEYAKYGSLRGFLRESR 121
Query: 273 SDGP--------------------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST 312
             GP                     +     +  A   +QG+ +L E      ++ + + 
Sbjct: 122 KVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE---MSLVHRDLAA 178
Query: 313 ANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSF 368
            NI + +    K+S +G +  + E D                 E+L   + T +S+VWSF
Sbjct: 179 RNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSF 238
Query: 369 GIVLLELLT-GRKNLDSRHPKEERNLVK----WSRPFLADDCRLSLIMDPQLKGRFPLKA 423
           G++L E++T G        P+   NL+K      RP   D+C                  
Sbjct: 239 GVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERP---DNC------------------ 277
Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK 459
           +  +  + L+C ++EP +RP    I ++L++   ++
Sbjct: 278 SEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKR 313

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 38/287 (13%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK--EFINDVNTLASLQHPNL 238
           R + +G   ++Y  +  D      +    V  +N S+   +  EF+N+ + +      ++
Sbjct: 23  RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV 82
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS---------DGPPIDWNTRVKIALC 289
            +LLG  ++      +++ E + HG L    Y RS           PP      +++A  
Sbjct: 83  VRLLGVVSK--GQPTLVVMELMAHGDLKS--YLRSLRPEAENNPGRPPPTLQEMIQMAAE 138
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX---- 345
            A G+ +L+ +   + ++ + +  N  +  DF+ K+  +G    I ET            
Sbjct: 139 IADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGKGLLP 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E+L+ G+ T  S++WSFG+VL E+ +               L +     L+++ 
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQ 240
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            L  +MD     + P      V D+   C Q  P  RPT   I   L
Sbjct: 241 VLKFVMDGGYLDQ-PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 286

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 207 EATVTRLNPSSQG--VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGS 264
           +  V  L P S G  + +   ++  L +L H N+ K  G    DG +   LI E L  GS
Sbjct: 52  QVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGS 111
Query: 265 LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
           L    Y   +   I+   ++K A+   +G+ +L   G  Q ++ + +  N+ ++ +   K
Sbjct: 112 LKE--YLPKNKNKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVK 166
Query: 325 LSGYGCAGHIPETDIXXXXXXXXX------XXXETLERGLLTPKSNVWSFGIVLLELLT 377
           +  +G    I ETD                   E L +      S+VWSFG+ L ELLT
Sbjct: 167 IGDFGLTKAI-ETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 207 EATVTRLNPSSQG--VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGS 264
           +  V  L P S G  + +   ++  L +L H N+ K  G    DG +   LI E L  GS
Sbjct: 40  QVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGS 99
Query: 265 LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
           L    Y   +   I+   ++K A+   +G+ +L   G  Q ++ + +  N+ ++ +   K
Sbjct: 100 LKE--YLPKNKNKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVK 154
Query: 325 LSGYGCAGHIPETDIXXXXXXXXX------XXXETLERGLLTPKSNVWSFGIVLLELLT 377
           +  +G    I ETD                   E L +      S+VWSFG+ L ELLT
Sbjct: 155 IGDFGLTKAI-ETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 212

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 32/271 (11%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 28  IGQGASGTVYTAM---DVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNY 82
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 83  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHSN- 135
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPE-TDIXXXXXXXXXXXXETLERGLL 359
             Q ++ +  + NI +  D S KL+ +G CA   PE +              E + R   
Sbjct: 136 --QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAY 193
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
            PK ++WS GI+ +E++ G     + +P     L+  +               P+L+   
Sbjct: 194 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT-------------PELQN-- 238
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           P K +    D   RCL+ +  +R + + + +
Sbjct: 239 PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 14/222 (6%)
Query: 167 LDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ-GVKEFIN 225
           L++V    +     + + EG    +   +   +  TS K      +L+ SSQ  ++EF++
Sbjct: 26  LEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLS 85
Query: 226 DVNTLASLQHPNLCKLLGF---HARDGSDQRMLIYERLFHGSLD-RLIYGRSDGPP--ID 279
           +   +    HPN+ +LLG     +  G  + M+I   + +G L   L+Y R +  P  I 
Sbjct: 86  EAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIP 145
Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI 339
             T +K  +  A G+ +L        ++ + +  N  +  D +  ++ +G +  I   D 
Sbjct: 146 LQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDY 202
Query: 340 XXXXXXXXX----XXXETLERGLLTPKSNVWSFGIVLLELLT 377
                           E+L   + T KS+VW+FG+ + E+ T
Sbjct: 203 YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIAT 244

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 32/271 (11%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 29  IGQGASGTVYTAM---DVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNY 83
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 84  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHSN- 136
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPE-TDIXXXXXXXXXXXXETLERGLL 359
             Q ++ +  + NI +  D S KL+ +G CA   PE +              E + R   
Sbjct: 137 --QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAY 194
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
            PK ++WS GI+ +E++ G     + +P     L+  +               P+L+   
Sbjct: 195 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT-------------PELQN-- 239
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           P K +    D   RCL+ +  +R + + + +
Sbjct: 240 PEKLSAIFRDFLNRCLEMDVEKRGSAKELIQ 270

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 28  IGQGASGTVYTAM---DVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNY 82
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 83  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHSN- 135
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPE-TDIXXXXXXXXXXXXETLERGLL 359
             Q ++ +  + NI +  D S KL+ +G CA   PE +              E + R   
Sbjct: 136 --QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 193
Query: 360 TPKSNVWSFGIVLLELLTG 378
            PK ++WS GI+ +E++ G
Sbjct: 194 GPKVDIWSLGIMAIEMIEG 212

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 28  IGQGASGTVYTAM---DVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNY 82
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 83  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHSN- 135
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPE-TDIXXXXXXXXXXXXETLERGLL 359
             Q ++ +  + NI +  D S KL+ +G CA   PE +              E + R   
Sbjct: 136 --QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAY 193
Query: 360 TPKSNVWSFGIVLLELLTG 378
            PK ++WS GI+ +E++ G
Sbjct: 194 GPKVDIWSLGIMAIEMIEG 212

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 28/189 (14%)
Query: 292 QGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XX 349
           +GL +LH E   + ++ +   AN+ + +    KL+ +G AG + +T I            
Sbjct: 131 KGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWM 187
Query: 350 XXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL 409
             E +++     K+++WS GI  +EL  G       HP     L+  + P          
Sbjct: 188 APEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNP---------- 237
Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE-ELDRQESRKSSSST---- 464
              P L G F     ++  +    CL K+PS RPT + + + +   + S+K+S  T    
Sbjct: 238 ---PTLVGDF----TKSFKEFIDACLNKDPSFRPTAKELLKHKFIVKNSKKTSYLTELID 290
Query: 465 -VRRASVEG 472
             +R   EG
Sbjct: 291 RFKRWKAEG 299

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 34/246 (13%)
Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI 269
           +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL   +
Sbjct: 296 IKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLDFL 352
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
            G + G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ +G
Sbjct: 353 KGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFG 408
Query: 330 CAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSR 385
            A  I + +                E    G  T KS+VWSFGI+L EL T GR      
Sbjct: 409 LARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM 468
Query: 386 HPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPSER 442
             +E                    ++D   +G R P   +   ++ D+  +C +KEP ER
Sbjct: 469 VNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEER 508
Query: 443 PTMRSI 448
           PT   +
Sbjct: 509 PTFEYL 514

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 111/271 (40%), Gaps = 32/271 (11%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I +G S  +Y A    D +T +  E  + ++N   Q  KE I N++  +   ++PN+   
Sbjct: 29  IGQGASGTVYTAM---DVATGQ--EVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNY 83
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH   
Sbjct: 84  LDSYLV--GDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEFLHSN- 136
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPE-TDIXXXXXXXXXXXXETLERGLL 359
             Q ++    + NI +  D S KL+ +G CA   PE +              E + R   
Sbjct: 137 --QVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAY 194
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
            PK ++WS GI+ +E++ G     + +P     L+  +               P+L+   
Sbjct: 195 GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT-------------PELQN-- 239
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           P K +    D   RCL+ +  +R + + + +
Sbjct: 240 PEKLSAIFRDFLNRCLEMDVEKRGSAKELIQ 270

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 38  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 94
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 95  FLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 150
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 151 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 210
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 211 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 250
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 251 ERPTFEYL 258

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 267
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 268 FLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 323
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 324 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 383
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 384 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 424 ERPTFEYL 431

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 267
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 268 FLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 323
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 324 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 383
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 384 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 424 ERPTFEYL 431

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 35  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIXIVTEYMSKGSLLD 91
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 92  FLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 147
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 148 FGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 207
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 208 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 247
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 248 ERPTFEYL 255

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVGEYMSKGSLLD 267
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 268 FLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 323
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 324 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 383
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 384 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 424 ERPTFEYL 431

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 59  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 114
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 115 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 171
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 172 DIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 220
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 221 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLLELMRMCWQYNPKMRPSFLEI 275
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 276 ISSIKEEME 284

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 68  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 123
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 124 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 180
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 181 DIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 229
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 230 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 284
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 285 ISSIKEEME 293

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 61  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 116
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 117 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 173
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 174 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 222
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 223 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 277
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 278 ISSIKEEME 286

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 103/247 (41%), Gaps = 36/247 (14%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 68  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 123
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 124 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 180
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 181 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 229
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+   I
Sbjct: 230 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 284
Query: 449 FEELDRQ 455
              +  +
Sbjct: 285 ISSIKEE 291

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 65  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 120
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 121 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 177
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 178 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 226
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 227 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 281
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 282 ISSIKEEME 290

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 129
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 130 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 186
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 187 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 235
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 236 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 290
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 291 ISSIKEEME 299

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 61  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 116
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 117 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCXVAEDFTVKIGDFGMTR 173
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 174 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 222
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 223 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLLELMRMCWQYNPKMRPSFLEI 277
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 278 ISSIKEEME 286

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 122
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 123 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 179
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 180 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 228
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 229 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 283
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 284 ISSIKEEME 292

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 45  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 104
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y ++    ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 105 D--YLQAHAERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 159
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 160 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 96  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 151
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 152 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 208
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 209 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 257
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 258 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 312
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 313 ISSIKEEME 321

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P ++ N
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPEMENN 122
Query: 282 ---------TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                      +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 123 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 179
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 180 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 228
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 229 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 283
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 284 ISSIKEEME 292

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 42  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMNKGSLLD 98
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V ++   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 99  FLKGET-GKYLRLPQLVDMSAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 154
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 155 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 214
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 215 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 254
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 255 ERPTFEYL 262

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 32/248 (12%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL- 265
           +  +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL 
Sbjct: 35  KVAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQL---YAVVSEEPIYIVTEYMNKGSLL 91
Query: 266 DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL 325
           D L  G  +G  +     V +A   A G+ ++        ++ +  +ANI +      K+
Sbjct: 92  DFLKDG--EGRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGNGLICKI 146
Query: 326 SGYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKN 381
           + +G A  I + +                E    G  T KS+VWSFGI+L EL+T GR  
Sbjct: 147 ADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 206
Query: 382 LDSRHPKEERNLV-KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
               + +E    V +  R     DC +SL                   ++ + C +K+P 
Sbjct: 207 YPGMNNREVLEQVERGYRMPCPQDCPISL------------------HELMIHCWKKDPE 248
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 249 ERPTFEYL 256

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP----- 276
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P     
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPAMANN 129
Query: 277 ----PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
               P   +  +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 130 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 186
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 187 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 235
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+   I
Sbjct: 236 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 290
Query: 449 FEELDRQ 455
              +  +
Sbjct: 291 ISSIKEE 297

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ + + ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLAAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 42  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMNKGSLLD 98
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G + G  +     V ++   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 99  FLKGET-GKYLRLPQLVDMSAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 154
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 155 FGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 214
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +KEP 
Sbjct: 215 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 254
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 255 ERPTFEYL 262

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 115/310 (37%), Gaps = 56/310 (18%)
Query: 176 NFFSDRCI--------------SEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVK 221
            +FSD C+               EG    ++ A   +      K    V  L  +S+  +
Sbjct: 28  QYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR 87
Query: 222 E-FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP---- 276
           + F  +   L  LQH ++ +  G          ++++E + HG L+R +  RS GP    
Sbjct: 88  QDFQREAELLTMLQHQHIVRFFGVCTE--GRPLLMVFEYMRHGDLNRFL--RSHGPDAKL 143
Query: 277 ----------PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
                     P+     + +A   A G+ +L        ++ + +T N  + +    K+ 
Sbjct: 144 LAGGEDVAPGPLGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIG 200
Query: 327 GYGCAGHIPETDIXXXXXXXXXXXX----ETLERGLLTPKSNVWSFGIVLLELLTGRKNL 382
            +G +  I  TD                 E++     T +S+VWSFG+VL E+ T  K  
Sbjct: 201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP 260
Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
             +    E           A DC   +    +L+   P      V  I   C Q+EP +R
Sbjct: 261 WYQLSNTE-----------AIDC---ITQGRELE--RPRACPPEVYAIMRGCWQREPQQR 304
Query: 443 PTMRSIFEEL 452
            +++ +   L
Sbjct: 305 HSIKDVHARL 314

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 40/249 (16%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP----- 276
           EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS  P     
Sbjct: 64  EFLNEASVMKEFNCHHVVRLLGVVSQ--GQPTLVIMELMTRGDLKS--YLRSLRPAMANN 119
Query: 277 ----PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
               P   +  +++A   A G+ +L+     + ++ + +  N  + +DF+ K+  +G   
Sbjct: 120 PVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR 176
Query: 333 HIPETDIXXXXXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
            I ETD                 E+L+ G+ T  S+VWSFG+VL E+ T           
Sbjct: 177 DIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIAT----------- 225
Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---- 444
               L +     L+++  L  +M+  L  + P      + ++   C Q  P  RP+    
Sbjct: 226 ----LAEQPYQGLSNEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEI 280
Query: 445 MRSIFEELD 453
           + SI EE++
Sbjct: 281 ISSIKEEME 289

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 41  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 100
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 101 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 155
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 156 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 211

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 45  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLR 104
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 105 E--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 159
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 160 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 46  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 105
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 106 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 160
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 161 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 216

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVIEYMSKGSLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 40  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 99
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 100 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 154
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 155 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 210

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 47  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 106
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 107 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 161
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 162 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 217

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 48  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 107
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 108 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 162
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 163 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 218

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 45  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 104
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 105 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 159
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 160 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 35/266 (13%)
Query: 193 RASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR 247
           + SFG+     D  T +     +  L  +   +++   ++  L+    P + +  G + +
Sbjct: 29  KGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYFGSYLK 88
Query: 248 DGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM 306
             S +  +I E L  GS LD L  G     P++      I     +GL +LH E   + +
Sbjct: 89  --STKLWIIMEYLGGGSALDLLKPG-----PLEETYIATILREILKGLDYLHSE---RKI 138
Query: 307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX--XXXXETLERGLLTPKSN 364
           + +   AN+ + +    KL+ +G AG + +T I              E +++     K++
Sbjct: 139 HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKAD 198
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +WS GI  +EL  G       HP     L+  + P             P L+G+     +
Sbjct: 199 IWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSP-------------PTLEGQ----HS 241
Query: 425 RTVADIALRCLQKEPSERPTMRSIFE 450
           +   +    CL K+P  RPT + + +
Sbjct: 242 KPFKEFVEACLNKDPRFRPTAKELLK 267

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 73  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 132
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 133 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 187
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 188 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 243

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVIEYMSKGSLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 34  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 90
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 91  FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 146
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 147 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 206
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 207 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 246
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 247 ERPTFEYL 254

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 42  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 101
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 102 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 156
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 157 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 49  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 108
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 109 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 163
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 164 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 219

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 42  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 101
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 102 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 156
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 157 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 36  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 92
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 93  FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 148
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 149 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 208
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 209 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 248
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 249 ERPTFEYL 256

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVCEYMSKGSLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASLQHPNL 238
           + +  G    +Y+  +  +  T K     +  LN ++  +   EF+++   +AS+ HP+L
Sbjct: 44  KVLGSGAFGTVYKGIWVPEGETVK-IPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 102
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTF 296
            +LLG      S    L+ + + HG L   ++   D  G  +  N  V+I    A+G+ +
Sbjct: 103 VRLLGVCL---SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQI----AKGMMY 155
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA----GHIPETDIXXXXXXXXXXXXE 352
           L E    + ++ + +  N+ +      K++ +G A    G   E +             E
Sbjct: 156 LEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALE 212
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK 395
            +     T +S+VWS+G+ + EL+T G K  D    +E  +L++
Sbjct: 213 CIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLE 256

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 60  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 119
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 120 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 174
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 175 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 60  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 119
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 120 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 174
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 175 DFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 42  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 101
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++ + +T NI ++ +   K+ 
Sbjct: 102 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIG 156
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 157 DFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Query: 208 ATVTRLNPSSQ-GVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
             V +L  S++  +++F  ++  L SLQH N+ K  G     G     LI E L +GSL 
Sbjct: 43  VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 102
Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
              Y +     ID    ++      +G+ +L   G  + ++   +T NI ++ +   K+ 
Sbjct: 103 D--YLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRNLATRNILVENENRVKIG 157
Query: 327 GYGCAGHIPETDIXXXXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
            +G    +P+                    E+L     +  S+VWSFG+VL EL T
Sbjct: 158 DFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 213

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEXMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G   A++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---AVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 103/261 (39%), Gaps = 32/261 (12%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR----MLIYERLFHGSLDRLIYG 271
           +S  ++EF+ +   +    HP++ KL+G   R  +  R    M+I   + HG L   +  
Sbjct: 65  ASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLA 124
Query: 272 RSDGP-PIDW--NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
              G  P +    T V+  +  A G+ +L        ++ + +  N  + +D +  ++ +
Sbjct: 125 SRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADF 181
Query: 329 GCAGHIPETDIXXXXXXXXX----XXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           G +  I   D                 E+L   L T  S+VW+FG+ + E++T G+    
Sbjct: 182 GLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYA 241
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
                E  N       +L    RL          + P +    V D+  +C   +P +RP
Sbjct: 242 GIENAEIYN-------YLIGGNRL----------KQPPECMEEVYDLMYQCWSADPKQRP 284
Query: 444 TMRSIFEELDRQESRKSSSST 464
           +   +  EL+      S  ST
Sbjct: 285 SFTCLRMELENILGHLSVLST 305

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 47/282 (16%)
Query: 205 KFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY---E 258
           + +A + R+    S    ++F  ++  L  L  HPN+  LLG       + R  +Y   E
Sbjct: 42  RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-----ACEHRGYLYLAIE 96
Query: 259 RLFHGSLDRLI-------------YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQA 305
              HG+L   +                S    +     +  A   A+G+ +L ++   Q 
Sbjct: 97  YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QF 153
Query: 306 MYNEFSTANIQIDKDFSAKLSGYGCA-GHIPETDIXXXXXXXXXXXXETLERGLLTPKSN 364
           ++ + +  NI + +++ AK++ +G + G                   E+L   + T  S+
Sbjct: 154 IHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSD 213
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ-LKGRFPLKA 423
           VWS+G++L E+++                     P+    C       PQ  +   PL  
Sbjct: 214 VWSYGVLLWEIVSLG-----------------GTPYCGMTCAELYEKLPQGYRLEKPLNC 256
Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQ-ESRKSSSST 464
              V D+  +C +++P ERP+   I   L+R  E RK+  +T
Sbjct: 257 DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNT 298

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 47/282 (16%)
Query: 205 KFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY---E 258
           + +A + R+    S    ++F  ++  L  L  HPN+  LLG       + R  +Y   E
Sbjct: 52  RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-----ACEHRGYLYLAIE 106
Query: 259 RLFHGSLDRLI-------------YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQA 305
              HG+L   +                S    +     +  A   A+G+ +L ++   Q 
Sbjct: 107 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QF 163
Query: 306 MYNEFSTANIQIDKDFSAKLSGYGCA-GHIPETDIXXXXXXXXXXXXETLERGLLTPKSN 364
           ++ + +  NI + +++ AK++ +G + G                   E+L   + T  S+
Sbjct: 164 IHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSD 223
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ-LKGRFPLKA 423
           VWS+G++L E+++                     P+    C       PQ  +   PL  
Sbjct: 224 VWSYGVLLWEIVSLG-----------------GTPYCGMTCAELYEKLPQGYRLEKPLNC 266
Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQ-ESRKSSSST 464
              V D+  +C +++P ERP+   I   L+R  E RK+  +T
Sbjct: 267 DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNT 308

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G  G + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGL-GRVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASLQHPNL 238
           + +  G    +Y+  +  +  T K     +  LN ++  +   EF+++   +AS+ HP+L
Sbjct: 21  KVLGSGAFGTVYKGIWVPEGETVK-IPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 79
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD--GPPIDWNTRVKIALCAAQGLTF 296
            +LLG      S    L+ + + HG L   ++   D  G  +  N  V+I    A+G+ +
Sbjct: 80  VRLLGVCL---SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQI----AKGMMY 132
Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA----GHIPETDIXXXXXXXXXXXXE 352
           L E    + ++ + +  N+ +      K++ +G A    G   E +             E
Sbjct: 133 LEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALE 189
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK 395
            +     T +S+VWS+G+ + EL+T G K  D    +E  +L++
Sbjct: 190 CIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLE 233

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  ++H  L +L   +A    +   ++ E +  GSL  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 112/279 (40%), Gaps = 40/279 (14%)
Query: 193 RASFGDDASTSKKFEATVTRLNPSSQGV-----KEFINDVNTLASLQHPNLCKLLGFHAR 247
           R +FG+  S   + + T+  +    + +      +F+ +   L    HPN+ +L+G   +
Sbjct: 124 RGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ 183
Query: 248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMY 307
               Q + I   L  G  D L + R++G  +   T +++   AA G+ +L  +     ++
Sbjct: 184 K---QPIYIVMELVQGG-DFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKC---CIH 236
Query: 308 NEFSTANIQIDKDFSAKLSGYGC----AGHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + +  N  + +    K+S +G     A  +                 E L  G  + +S
Sbjct: 237 RDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTAPEALNYGRYSSES 296
Query: 364 NVWSFGIVLLELL----TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
           +VWSFGI+L E      +   NL ++  +E          F+    RL     P+L    
Sbjct: 297 DVWSFGILLWETFSLGASPYPNLSNQQTRE----------FVEKGGRLPC---PEL---- 339
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR 458
                  V  +  +C   EP +RP+  +I++EL     R
Sbjct: 340 ---CPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  G L  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVMEYMSKGCLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 111/282 (39%), Gaps = 47/282 (16%)
Query: 205 KFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY---E 258
           + +A + R+    S    ++F  ++  L  L  HPN+  LLG       + R  +Y   E
Sbjct: 49  RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-----ACEHRGYLYLAIE 103
Query: 259 RLFHGSLDRLI-------------YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQA 305
              HG+L   +                S    +     +  A   A+G+ +L ++   Q 
Sbjct: 104 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QF 160
Query: 306 MYNEFSTANIQIDKDFSAKLSGYGCA-GHIPETDIXXXXXXXXXXXXETLERGLLTPKSN 364
           ++   +  NI + +++ AK++ +G + G                   E+L   + T  S+
Sbjct: 161 IHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSD 220
Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ-LKGRFPLKA 423
           VWS+G++L E+++                     P+    C       PQ  +   PL  
Sbjct: 221 VWSYGVLLWEIVSLG-----------------GTPYCGMTCAELYEKLPQGYRLEKPLNC 263
Query: 424 ARTVADIALRCLQKEPSERPTMRSIFEELDRQ-ESRKSSSST 464
              V D+  +C +++P ERP+   I   L+R  E RK+  +T
Sbjct: 264 DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNT 305

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 34/230 (14%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 55  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 109
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + +       
Sbjct: 110 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFV 167
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD 403
                   E L+    + +S++WS G+ L+E+  GR                + RP +A 
Sbjct: 168 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR----------------YPRPPMAI 211
Query: 404 DCRLSLIMD---PQL-KGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
              L  I++   P+L    F L+      D   +CL K P+ER  ++ + 
Sbjct: 212 FELLDYIVNEPPPKLPSAVFSLE----FQDFVNKCLIKNPAERADLKQLM 257

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G A  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLA-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  GSL  
Sbjct: 212 VAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGSLLD 268
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 269 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 324
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G    I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 325 FGLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 384
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 385 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 424
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 425 ERPTFEYL 432

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 34/248 (13%)
Query: 208 ATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR 267
             +  L P +   + F+ +   +  L+H  L +L   +A    +   ++ E +  G L  
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSKGCLLD 101
Query: 268 LIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            + G   G  +     V +A   A G+ ++        ++ +   ANI + ++   K++ 
Sbjct: 102 FLKGEM-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVAD 157
Query: 328 YGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD 383
           +G A  I + +                E    G  T KS+VWSFGI+L EL T GR    
Sbjct: 158 FGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP 217
Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG-RFPL--KAARTVADIALRCLQKEPS 440
               +E                    ++D   +G R P   +   ++ D+  +C +K+P 
Sbjct: 218 GMVNRE--------------------VLDQVERGYRMPCPPECPESLHDLMCQCWRKDPE 257
Query: 441 ERPTMRSI 448
           ERPT   +
Sbjct: 258 ERPTFEYL 265

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 42/289 (14%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLCKL 241
           + EG    ++ A   +      K    V  L  +S+  ++ F  +   L  LQH ++ + 
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP--------------PIDWNTRVKIA 287
            G          ++++E + HG L+R +  RS GP              P+     + +A
Sbjct: 80  FGVCTE--GRPLLMVFEYMRHGDLNRFL--RSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 135
Query: 288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX 347
              A G+ +L        ++ + +T N  + +    K+  +G +  I  TD         
Sbjct: 136 SQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 192
Query: 348 XXXX----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD 403
                   E++     T +S+VWSFG+VL E+ T  K    +    E           A 
Sbjct: 193 LPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE-----------AI 241
Query: 404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
           DC   +    +L+   P      V  I   C Q+EP +R +++ +   L
Sbjct: 242 DC---ITQGRELER--PRACPPEVYAIMRGCWQREPQQRHSIKDVHARL 285

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 112/279 (40%), Gaps = 40/279 (14%)
Query: 193 RASFGDDASTSKKFEATVTRLNPSSQGV-----KEFINDVNTLASLQHPNLCKLLGFHAR 247
           R +FG+  S   + + T+  +    + +      +F+ +   L    HPN+ +L+G   +
Sbjct: 124 RGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ 183
Query: 248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMY 307
               Q + I   L  G  D L + R++G  +   T +++   AA G+ +L  +     ++
Sbjct: 184 K---QPIYIVMELVQGG-DFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKC---CIH 236
Query: 308 NEFSTANIQIDKDFSAKLSGYGC----AGHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + +  N  + +    K+S +G     A  +                 E L  G  + +S
Sbjct: 237 RDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSES 296
Query: 364 NVWSFGIVLLELL----TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
           +VWSFGI+L E      +   NL ++  +E          F+    RL     P+L    
Sbjct: 297 DVWSFGILLWETFSLGASPYPNLSNQQTRE----------FVEKGGRLPC---PEL---- 339
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR 458
                  V  +  +C   EP +RP+  +I++EL     R
Sbjct: 340 ---CPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 39/244 (15%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGF-HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
           +EF  +V  +++L HPN+ KL G  H         +    L+H  LD+         PI 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDK-------AHPIK 120
Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI---QIDKD--FSAKLSGYGCAGHI 334
           W+ ++++ L  A G+ ++  + P   ++ +  + NI    +D++    AK++ +G +   
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQS 179
Query: 335 PETDIXXXXXXXXXXXXETL--ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER- 391
             + +            ET+  E    T K++ +SF ++L  +LTG    D     + + 
Sbjct: 180 VHS-VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF 238
Query: 392 -NLVKWS--RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
            N+++    RP + +DC       P+L         R V ++   C   +P +RP    I
Sbjct: 239 INMIREEGLRPTIPEDC------PPRL---------RNVIEL---CWSGDPKKRPHFSYI 280
Query: 449 FEEL 452
            +EL
Sbjct: 281 VKEL 284

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 39/244 (15%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGF-HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
           +EF  +V  +++L HPN+ KL G  H         +    L+H  LD+         PI 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDK-------AHPIK 120
Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI---QIDKD--FSAKLSGYGCAGHI 334
           W+ ++++ L  A G+ ++  + P   ++ +  + NI    +D++    AK++ +G +   
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS 179
Query: 335 PETDIXXXXXXXXXXXXETL--ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER- 391
             + +            ET+  E    T K++ +SF ++L  +LTG    D     + + 
Sbjct: 180 VHS-VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF 238
Query: 392 -NLVKWS--RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
            N+++    RP + +DC       P+L         R V ++   C   +P +RP    I
Sbjct: 239 INMIREEGLRPTIPEDC------PPRL---------RNVIEL---CWSGDPKKRPHFSYI 280
Query: 449 FEEL 452
            +EL
Sbjct: 281 VKEL 284

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 26/218 (11%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLCKL 241
           + EG    ++ A   +      K    V  L  +S+  ++ F  +   L  LQH ++ + 
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP--------------PIDWNTRVKIA 287
            G          ++++E + HG L+R +  RS GP              P+     + +A
Sbjct: 86  FGVCTE--GRPLLMVFEYMRHGDLNRFL--RSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 141
Query: 288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXX 347
              A G+ +L        ++ + +T N  + +    K+  +G +  I  TD         
Sbjct: 142 SQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 198
Query: 348 XXXX----ETLERGLLTPKSNVWSFGIVLLELLTGRKN 381
                   E++     T +S+VWSFG+VL E+ T  K 
Sbjct: 199 LPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQ 236

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 114 IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 168
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 169 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 226
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                   E L+    + +S++WS G+ L+E+  GR
Sbjct: 227 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 262

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++    +   I      K
Sbjct: 62  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVL---KEAKRIPEEILGK 118
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
           +++   +GL +L E+   Q M+ +   +NI ++     KL  +G +G + ++        
Sbjct: 119 VSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT 176
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                 E L+    + +S++WS G+ L+EL  GR
Sbjct: 177 RSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGR 210

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 26/228 (11%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++      P        K
Sbjct: 71  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPE---QILGK 127
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
           +++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++        
Sbjct: 128 VSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT 185
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E L+    + +S++WS G+ L+E+  GR  + S                +A   
Sbjct: 186 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIGSGSGS------------MAIFE 233
Query: 406 RLSLIMD---PQL-KGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
            L  I++   P+L  G F L+      D   +CL K P+ER  ++ + 
Sbjct: 234 LLDYIVNEPPPKLPSGVFSLE----FQDFVNKCLIKNPAERADLKQLM 277

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 30/257 (11%)
Query: 204 KKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK +  + R+N       + E + ++  ++   HPN+     + +    D+  L+ + L 
Sbjct: 39  KKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSY--YTSFVVKDELWLVMKLLS 96
Query: 262 HGSLDRLIY-----GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ 316
            GS+  +I      G      +D +T   I     +GL +LH+ G    ++ +    NI 
Sbjct: 97  GGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNIL 153
Query: 317 IDKDFSAKLSGYGCAGHIPET-DIXXXXXXXXXXXX------ETLE--RGLLTPKSNVWS 367
           + +D S +++ +G +  +    DI                  E +E  RG    K+++WS
Sbjct: 154 LGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADIWS 212
Query: 368 FGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTV 427
           FGI  +EL TG        P +   L   + P   +    + + D ++  ++  K+ R +
Sbjct: 213 FGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLE----TGVQDKEMLKKYG-KSFRKM 267
Query: 428 ADIALRCLQKEPSERPT 444
             +   CLQK+P +RPT
Sbjct: 268 ISL---CLQKDPEKRPT 281

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEXMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 89  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 144
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 145 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 200
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 201 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 246
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 247 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 303
Query: 454 R 454
           +
Sbjct: 304 K 304

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 79  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 133
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 134 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 191
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                   E L+    + +S++WS G+ L+E+  GR
Sbjct: 192 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 30/257 (11%)
Query: 204 KKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK +  + R+N       + E + ++  ++   HPN+     + +    D+  L+ + L 
Sbjct: 34  KKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSY--YTSFVVKDELWLVMKLLS 91
Query: 262 HGSLDRLIY-----GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ 316
            GS+  +I      G      +D +T   I     +GL +LH+ G    ++ +    NI 
Sbjct: 92  GGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNIL 148
Query: 317 IDKDFSAKLSGYGCAGHIPET-DIXXXXXXXXXXXX------ETLE--RGLLTPKSNVWS 367
           + +D S +++ +G +  +    DI                  E +E  RG    K+++WS
Sbjct: 149 LGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGY-DFKADIWS 207
Query: 368 FGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTV 427
           FGI  +EL TG        P +   L   + P   +    + + D ++  ++  K+ R +
Sbjct: 208 FGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLE----TGVQDKEMLKKYG-KSFRKM 262
Query: 428 ADIALRCLQKEPSERPT 444
             +   CLQK+P +RPT
Sbjct: 263 ISL---CLQKDPEKRPT 276

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 32/242 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+  L G   +  S   M+I E + +GSLD  +  R +      
Sbjct: 79  RDFLSEASIMGQFDHPNVIHLEGVVTK--STPVMIITEFMENGSLDSFL--RQNDGQFTV 134
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---- 336
              V +    A G+ +L +      ++ + +  NI ++ +   K+S +G +  + +    
Sbjct: 135 IQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD 191
Query: 337 ---TDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERN 392
              T              E ++    T  S+VWS+GIV+ E+++ G +       ++  N
Sbjct: 192 PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVIN 251
Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            ++        D RL            P+     +  + L C QK+ + RP    I   L
Sbjct: 252 AIE-------QDYRLPP----------PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL 294
Query: 453 DR 454
           D+
Sbjct: 295 DK 296

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 62  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEXMENGSLDSFL--RKHDAQFTV 117
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 118 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 173
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 174 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 219
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 220 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 276
Query: 454 R 454
           +
Sbjct: 277 K 277

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 79  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 134
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 135 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 190
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 191 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 236
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 237 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 293
Query: 454 R 454
           +
Sbjct: 294 K 294

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 62  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 117
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 118 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 173
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 174 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 219
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 220 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 276
Query: 454 R 454
           +
Sbjct: 277 K 277

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 21  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 78
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 79  -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 132
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 133 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 192
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 193 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 241
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 242 KAMKRLMAE----CLKKKRDERPLFPQILASIE 270

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 47  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 104
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 105 -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 158
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 159 KSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 218
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 219 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 267
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 268 KAMKRLMAE----CLKKKRDERPLFPQILASIE 296

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 52  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 106
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 107 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                   E L+    + +S++WS G+ L+E+  GR
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 47  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 104
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 105 -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDL 158
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 159 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 218
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 219 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 267
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 268 KAMKRLMAE----CLKKKRDERPLFPQILASIE 296

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD  +  R        
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDSFL--RKHDAQFTV 146
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    A G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---FVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 202
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIVL E+++  +              
Sbjct: 203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE-------------- 248
Query: 395 KWSRPFL-ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              RP+    +  +   +D   +   P+     +  + L C QK+ + RP    I   LD
Sbjct: 249 ---RPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILD 305
Query: 454 R 454
           +
Sbjct: 306 K 306

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 24  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 81
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 82  -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 135
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 136 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 195
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 196 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 244
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 245 KAMKRLMAE----CLKKKRDERPLFPQILASIE 273

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 52  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 106
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 107 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                   E L+    + +S++WS G+ L+E+  GR
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 46  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 103
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 104 -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 157
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 158 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 217
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 218 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 266
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 267 KAMKRLMAE----CLKKKRDERPLFPQILASIE 295

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 39  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 96
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 97  -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 150
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 151 KSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 210
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 211 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 259
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 260 KAMKRLMAE----CLKKKRDERPLFPQILASIE 288

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 19  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 76
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 77  -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 130
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 239
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 240 KAMKRLMAE----CLKKKRDERPLFPQILASIE 268

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 24  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 81
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 82  -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 135
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 136 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 195
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 196 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 244
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 245 KAMKRLMAE----CLKKKRDERPLFPQILASIE 273

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 19  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 76
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 77  -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 130
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 239
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 240 KAMKRLMAE----CLKKKRDERPLFPQILASIE 268

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 52  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 106
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 107 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                   E L+    + +S++WS G+ L+E+  GR
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLI-YERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +  L  L   N   ++GF+    SD  + I  E +  GSLD+++   GR     I     
Sbjct: 52  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-----IPEQIL 106
Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXX 343
            K+++   +GLT+L E+   + M+ +   +NI ++     KL  +G +G + ++      
Sbjct: 107 GKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV 164
Query: 344 XXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                   E L+    + +S++WS G+ L+E+  GR
Sbjct: 165 GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 34/242 (14%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+  L G   +      M+I E + +GSLD  +  R +      
Sbjct: 75  RDFLSEASIMGQFDHPNIIHLEGVVTK--CKPVMIITEYMENGSLDAFL--RKNDGRFTV 130
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +      G+ +L +     A++ + +  NI ++ +   K+S +G +  + E D  
Sbjct: 131 IQLVGMLRGIGSGMKYLSD---MSAVHRDLAARNILVNSNLVCKVSDFGMS-RVLEDDPE 186
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIV+ E+++  +              
Sbjct: 187 AAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE-------------- 232
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              RP+  D     +I   +   R   P+     +  + L C QKE S+RP    I   L
Sbjct: 233 ---RPYW-DMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNML 288
Query: 453 DR 454
           D+
Sbjct: 289 DK 290

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+  L G   R      M++ E + +G+LD  +  R        
Sbjct: 89  RDFLCEASIMGQFDHPNVVHLEGVVTR--GKPVMIVIEFMENGALDAFL--RKHDGQFTV 144
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI---PET 337
              V +    A G+ +L + G    ++ + +  NI ++ +   K+S +G +  I   PE 
Sbjct: 145 IQLVGMLRGIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEA 201
Query: 338 DIXXXXXX--XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
                           E ++    T  S+VWS+GIV+ E+++  +               
Sbjct: 202 VYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGE--------------- 246
Query: 396 WSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
             RP+  D     +I   +   R   P+     +  + L C QKE +ERP    I   LD
Sbjct: 247 --RPYW-DMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILD 303
Query: 454 R 454
           +
Sbjct: 304 K 304

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 114/273 (41%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+     +
Sbjct: 19  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST---A 75
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   AQG+ +LH +     ++ + 
Sbjct: 76  PQLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDL 130
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               ++   + +S
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R +L+ D         +++   P
Sbjct: 191 DVYAFGIVLYELMTGQLPYSNINNR----DQIIFMVGRGYLSPDL-------SKVRSNCP 239
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               R +A+    CL+K+  ERP    I   ++
Sbjct: 240 KAMKRLMAE----CLKKKRDERPLFPQILASIE 268

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 39/244 (15%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGF-HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
           +EF  +V  +++L HPN+ KL G  H         +    L+H  LD+         PI 
Sbjct: 68  QEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDK-------AHPIK 120
Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI---QIDKD--FSAKLSGYGCAGHI 334
           W+ ++++ L  A G+ ++  + P   ++ +  + NI    +D++    AK++ +  +   
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQS 179
Query: 335 PETDIXXXXXXXXXXXXETL--ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER- 391
             + +            ET+  E    T K++ +SF ++L  +LTG    D     + + 
Sbjct: 180 VHS-VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF 238
Query: 392 -NLVKWS--RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
            N+++    RP + +DC       P+L         R V ++   C   +P +RP    I
Sbjct: 239 INMIREEGLRPTIPEDC------PPRL---------RNVIEL---CWSGDPKKRPHFSYI 280
Query: 449 FEEL 452
            +EL
Sbjct: 281 VKEL 284

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 38/251 (15%)
Query: 204 KKFEATVTRLNPSSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIYERLFH 262
           K+  ATV     +SQ  K  + D++ ++ ++  P      G   R+G    + I   L  
Sbjct: 82  KRIRATV-----NSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGD---VWICMELMD 133
Query: 263 GSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
            SLD+      D G  I  +   KIA+   + L  LH +     ++ +   +N+ I+   
Sbjct: 134 TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALG 191
Query: 322 SAKLSGYGCAGHIPET-----DIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELL 376
             K+  +G +G++ ++     D               L +   + KS++WS GI ++EL 
Sbjct: 192 QVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELA 251
Query: 377 TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLKGRFPLKAARTVADIALR 433
             R   DS           W  PF     +L  +++   PQL      K +    D   +
Sbjct: 252 ILRFPYDS-----------WGTPFQ----QLKQVVEEPSPQLPAD---KFSAEFVDFTSQ 293
Query: 434 CLQKEPSERPT 444
           CL+K   ERPT
Sbjct: 294 CLKKNSKERPT 304

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 32/242 (13%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+  L G   +  S   M+I E + +GSLD  +  R +      
Sbjct: 53  RDFLSEASIMGQFDHPNVIHLEGVVTK--STPVMIITEFMENGSLDSFL--RQNDGQFTV 108
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---- 336
              V +    A G+ +L +      ++   +  NI ++ +   K+S +G +  + +    
Sbjct: 109 IQLVGMLRGIAAGMKYLAD---MNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSD 165
Query: 337 ---TDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERN 392
              T              E ++    T  S+VWS+GIV+ E+++ G +       ++  N
Sbjct: 166 PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVIN 225
Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            ++        D RL     P      P+     +  + L C QK+ + RP    I   L
Sbjct: 226 AIE-------QDYRLP----P------PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL 268
Query: 453 DR 454
           D+
Sbjct: 269 DK 270

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 35  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK--- 91
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   A+G+ +LH +     ++ + 
Sbjct: 92  PQLAIVTQWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDL 146
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               +    + +S
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 206
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R  L+ D         +++   P
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINNR----DQIIEMVGRGSLSPDL-------SKVRSNCP 255
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
            +  R +A+    CL+K+  ERP+   I  E++
Sbjct: 256 KRMKRLMAE----CLKKKRDERPSFPRILAEIE 284

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 44  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 101
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 102 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 158
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 159 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 218
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 219 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 272
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 273 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 297

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 47  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 104
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 105 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 161
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 162 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 221
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 222 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 275
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 276 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 300

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 34/268 (12%)
Query: 193 RASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ 252
           +  FGD      +      +   +    + F+ + + +  L+H NL +LLG    +    
Sbjct: 203 KGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG- 261
Query: 253 RMLIYERLFHGSLDRLIYGRSDGPPI-DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS 311
             ++ E +  GSL  + Y RS G  +   +  +K +L   + + +L  EG    ++ + +
Sbjct: 262 LYIVTEYMAKGSL--VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL--EGN-NFVHRDLA 316
Query: 312 TANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIV 371
             N+ + +D  AK+S +G       T              E L     + KS+VWSFGI+
Sbjct: 317 ARNVLVSEDNVAKVSDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 375
Query: 372 LLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR----T 426
           L E+ + GR              V + R  L D       + P+++  + + A       
Sbjct: 376 LWEIYSFGR--------------VPYPRIPLKD-------VVPRVEKGYKMDAPDGCPPA 414
Query: 427 VADIALRCLQKEPSERPTMRSIFEELDR 454
           V D+   C   + + RPT   + E+L+ 
Sbjct: 415 VYDVMKNCWHLDAATRPTFLQLREQLEH 442

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 48  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 105
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 106 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 162
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 163 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 222
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 223 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 276
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 277 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 301

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 55  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 112
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 113 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 169
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 170 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 229
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 230 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 283
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 284 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 308

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 45/278 (16%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 55  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 112
Query: 257 YERLFHGSLDRLIYGRSDGPPIDWNTR--------------VKIALCAAQGLTFLHEEGP 302
            E    G+L   +  R + P ++++                V  A   A+G+ +L  +  
Sbjct: 113 VEYASKGNLREYLQAR-EPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-- 169
Query: 303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGL 358
            + ++ + +  N+ + +D   K++ +G A  I   D                 E L   +
Sbjct: 170 -KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRI 228
Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLK 416
            T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M     
Sbjct: 229 YTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM----- 283
Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                        +   C    PS+RPT + + E+LDR
Sbjct: 284 -------------MMRDCWHAVPSQRPTFKQLVEDLDR 308

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+  +   
Sbjct: 23  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP-- 80
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   A+G+ +LH +     ++ + 
Sbjct: 81  -QLAIVTQWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAKS---IIHRDL 134
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               +    + +S
Sbjct: 135 KSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 194
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R  L+ D         +++   P
Sbjct: 195 DVYAFGIVLYELMTGQLPYSNINNR----DQIIEMVGRGSLSPDL-------SKVRSNCP 243
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
            +  R +A+    CL+K+  ERP+   I  E++
Sbjct: 244 KRMKRLMAE----CLKKKRDERPSFPRILAEIE 272

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 50/259 (19%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S++  ++F  +   L    HPN+  +LG      +    LI   + +GSL  +++  ++ 
Sbjct: 47  STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNF 106
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG-------- 327
             +D +  VK AL  A+G+ FLH   P    +   ++ ++ ID+D +A++S         
Sbjct: 107 V-VDQSQAVKFALDMARGMAFLHTLEPLIPRH-ALNSRSVMIDEDMTARISMADVKFSFQ 164
Query: 328 -----YGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNL 382
                Y  A   PE               +T  R      +++WSF ++L EL+T     
Sbjct: 165 SPGRMYAPAWVAPEA--------LQKKPEDTNRRS-----ADMWSFAVLLWELVTREV-- 209
Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG---RFPLKAARTVADIALRCLQKEP 439
                           PF AD   + + M   L+G     P   +  V+ +   C+ ++P
Sbjct: 210 ----------------PF-ADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDP 252
Query: 440 SERPTMRSIFEELDRQESR 458
           ++RP    I   L++ + +
Sbjct: 253 AKRPKFDMIVPILEKMQDK 271

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 40  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 97
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 98  VEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 154
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 155 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 214
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 215 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 268
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 269 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 293

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 36/273 (13%)
Query: 194 ASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS 250
            SFG         +  V  LN   P+ Q ++ F N+V  L   +H N+   +G+     +
Sbjct: 35  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST---A 91
Query: 251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF 310
            Q  ++ +     SL   ++        +    + IA   A+G+ +LH +     ++ + 
Sbjct: 92  PQLAIVTQWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDL 146
Query: 311 STANIQIDKDFSAKLSGYGCA-------GHIPETDIXXXXXXXXXXXXETLERGLLTPKS 363
            + NI + +D + K+  +G A       G      +               +    + +S
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 206
Query: 364 NVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP 420
           +V++FGIVL EL+TG+    N+++R    ++ +    R  L+ D         +++   P
Sbjct: 207 DVYAFGIVLYELMTGQLPYSNINNR----DQIIEMVGRGSLSPDL-------SKVRSNCP 255
Query: 421 LKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
            +  R +A+    CL+K+  ERP+   I  E++
Sbjct: 256 KRMKRLMAE----CLKKKRDERPSFPRILAEIE 284

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 39/275 (14%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 96  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 153
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 154 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 210
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 211 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 270
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
           T +S+VWSFG++L E+ T   +     P EE  L K     L +  R    MD       
Sbjct: 271 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEE--LFK----LLKEGHR----MDK------ 314
Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           P      +  +   C    PS+RPT + + E+LDR
Sbjct: 315 PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 349

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 84  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 138
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 139 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 196 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 237
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 238 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 282

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 55  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 112
Query: 257 YERLFHGSLDRLI-----------YGRSDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +           Y  S  P    +++  V  A   A+G+ +L  +   
Sbjct: 113 VEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 169
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 170 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 229
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 230 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 283
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 284 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 308

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 8/186 (4%)
Query: 193 RASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ 252
           +  FGD      +      +   +    + F+ + + +  L+H NL +LLG    +    
Sbjct: 22  KGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE-KGG 80
Query: 253 RMLIYERLFHGSLDRLIYGRSDGPPI-DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS 311
             ++ E +  GSL  + Y RS G  +   +  +K +L   + + +L E   F  ++ + +
Sbjct: 81  LYIVTEYMAKGSL--VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL-EGNNF--VHRDLA 135
Query: 312 TANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIV 371
             N+ + +D  AK+S +G       T              E L     + KS+VWSFGI+
Sbjct: 136 ARNVLVSEDNVAKVSDFGLTKEASSTQ-DTGKLPVKWTAPEALREAAFSTKSDVWSFGIL 194
Query: 372 LLELLT 377
           L E+ +
Sbjct: 195 LWEIYS 200

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 112/277 (40%), Gaps = 43/277 (15%)
Query: 198 DDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLI 256
           D  +   K    + + + + + + + I+++  +  + +H N+  LLG   +DG     +I
Sbjct: 55  DKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVI 112
Query: 257 YERLFHGSLDRLIYGR-----------SDGPPIDWNTR--VKIALCAAQGLTFLHEEGPF 303
            E    G+L   +  R           S  P    +++  V  A   A+G+ +L  +   
Sbjct: 113 VEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK--- 169
Query: 304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX----XXXXXXETLERGLL 359
           + ++ + +  N+ + +D   K++ +G A  I   D                 E L   + 
Sbjct: 170 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVKWMAPEALFDRIY 229
Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKG 417
           T +S+VWSFG++L E+ T   +     P EE  + L +  R     +C   L M      
Sbjct: 230 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM------ 283
Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       +   C    PS+RPT + + E+LDR
Sbjct: 284 ------------MMRDCWHAVPSQRPTFKQLVEDLDR 308

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 34/241 (14%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+ +L G   R      M++ E + +GSLD  +  R+       
Sbjct: 95  RDFLSEASIMGQFDHPNIIRLEGVVTR--GRLAMIVTEYMENGSLDTFL--RTHDGQFTI 150
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +      G+ +L + G    ++ + +  N+ +D +   K+S +G +  + E D  
Sbjct: 151 MQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLS-RVLEDDPD 206
Query: 341 XXXXXXXX------XXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     +  S+VWSFG+V+ E+L   +              
Sbjct: 207 AAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE-------------- 252
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              RP+     R  +I   +   R   P+     +  + L C  K+ ++RP    I   L
Sbjct: 253 ---RPYWNMTNR-DVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL 308
Query: 453 D 453
           D
Sbjct: 309 D 309

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 34/241 (14%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+ +L G   R      M++ E + +GSLD  +  R+       
Sbjct: 95  RDFLSEASIMGQFDHPNIIRLEGVVTR--GRLAMIVTEYMENGSLDTFL--RTHDGQFTI 150
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +      G+ +L + G    ++ + +  N+ +D +   K+S +G +  + E D  
Sbjct: 151 MQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLS-RVLEDDPD 206
Query: 341 XXXXXXXX------XXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     +  S+VWSFG+V+ E+L   +              
Sbjct: 207 AAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE-------------- 252
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              RP+     R  +I   +   R   P+     +  + L C  K+ ++RP    I   L
Sbjct: 253 ---RPYWNMTNR-DVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL 308
Query: 453 D 453
           D
Sbjct: 309 D 309

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 54/273 (19%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-------- 273
           +F  +   +A   +PN+ KLLG  A        L++E + +G L+  +   S        
Sbjct: 96  DFQREAALMAEFDNPNIVKLLGVCAV--GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLS 153
Query: 274 -------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
                          PP+    ++ IA   A G+ +L E    + ++ + +T N  + ++
Sbjct: 154 HSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGEN 210
Query: 321 FSAKLSGYGCAGHIPETDIXXXXXXXXXXXX----ETLERGLLTPKSNVWSFGIVLLELL 376
              K++ +G + +I   D                 E++     T +S+VW++G+VL E+ 
Sbjct: 211 MVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF 270
Query: 377 TGRKNLDSRHPKEERNLVKWSRP--FLA--DDCRLSLIMDPQLKGRFPLKAARTVADIAL 432
           +    L   +      ++ + R    LA  ++C L L                   ++  
Sbjct: 271 S--YGLQPYYGMAHEEVIYYVRDGNILACPENCPLELY------------------NLMR 310
Query: 433 RCLQKEPSERPTMRSIFEELDRQESRKSSSSTV 465
            C  K P++RP+  SI   L R   R   +  V
Sbjct: 311 LCWSKLPADRPSFCSIHRILQRMCERAEGTVGV 343

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 84  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 138
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 139 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGT 195
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 196 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 237
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 238 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 282

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 59  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 113
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 114 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGT 170
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 212
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 213 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 257

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 60  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 114
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 115 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGT 171
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 172 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 213
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 214 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 258

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 75  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 129
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 130 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 186
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 187 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 228
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 229 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 273

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     S +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDSTRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---KVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QDTYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 20/217 (9%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY 270
           T+LNP+S  +++   +V  +  L HPN+ KL  F   +      LI E    G +   + 
Sbjct: 51  TQLNPTS--LQKLFREVRIMKILNHPNIVKL--FEVIETEKTLYLIMEYASGGEVFDYLV 106
Query: 271 GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
                   +  ++ +  + A Q   + H++   + ++ +    N+ +D D + K++ +G 
Sbjct: 107 AHGRMKEKEARSKFRQIVSAVQ---YCHQK---RIVHRDLKAENLLLDADMNIKIADFGF 160
Query: 331 AGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
           +                      L +G     P+ +VWS G++L  L++G    D ++ K
Sbjct: 161 SNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK 220
Query: 389 EERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           E R  V   K+  PF ++ DC    +  L+++P  +G
Sbjct: 221 ELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRG 257

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 42/252 (16%)
Query: 210 VTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM-LIYERLFHGSLDRL 268
           + R +  +Q  + F+ +V  +  L+HPN+ K +G   +   D+R+  I E +  G+L  +
Sbjct: 43  LIRFDEETQ--RTFLKEVKVMRCLEHPNVLKFIGVLYK---DKRLNFITEYIKGGTLRGI 97
Query: 269 IYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
           I       P  W+ RV  A   A G+ +LH       ++ + ++ N  + ++ +  ++ +
Sbjct: 98  IKSMDSQYP--WSQRVSFAKDIASGMAYLHS---MNIIHRDLNSHNCLVRENKNVVVADF 152
Query: 329 GCAGHIPETDI----------------XXXXXXXXXXXXETLERGLLTPKSNVWSFGIVL 372
           G A  + +                               E +       K +V+SFGIVL
Sbjct: 153 GLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVL 212
Query: 373 LELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIAL 432
            E++ GR N D  +     +     R FL   C              P     +   I +
Sbjct: 213 CEII-GRVNADPDYLPRTMDFGLNVRGFLDRYC--------------PPNCPPSFFPITV 257
Query: 433 RCLQKEPSERPT 444
           RC   +P +RP+
Sbjct: 258 RCCDLDPEKRPS 269

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 20/217 (9%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY 270
           T+LNP+S  +++   +V  +  L HPN+ KL  F   +      LI E    G +   + 
Sbjct: 48  TQLNPTS--LQKLFREVRIMKILNHPNIVKL--FEVIETEKTLYLIMEYASGGEVFDYLV 103
Query: 271 GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
                   +  ++ +  + A Q   + H++   + ++ +    N+ +D D + K++ +G 
Sbjct: 104 AHGRMKEKEARSKFRQIVSAVQ---YCHQK---RIVHRDLKAENLLLDADMNIKIADFGF 157
Query: 331 AGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
           +                      L +G     P+ +VWS G++L  L++G    D ++ K
Sbjct: 158 SNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK 217
Query: 389 EERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           E R  V   K+  PF ++ DC    +  L+++P  +G
Sbjct: 218 ELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRG 254

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 38/251 (15%)
Query: 204 KKFEATVTRLNPSSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIYERLFH 262
           K+  ATV     +SQ  K  + D++ ++ ++  P      G   R+G    + I   L  
Sbjct: 38  KRIRATV-----NSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGD---VWICMELMD 89
Query: 263 GSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
            SLD+      D G  I  +   KIA+   + L  LH +     ++ +   +N+ I+   
Sbjct: 90  TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALG 147
Query: 322 SAKLSGYGCAGHI-----PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELL 376
             K+  +G +G++      + D               L +   + KS++WS GI ++EL 
Sbjct: 148 QVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELA 207
Query: 377 TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLKGRFPLKAARTVADIALR 433
             R   DS           W  PF     +L  +++   PQL      K +    D   +
Sbjct: 208 ILRFPYDS-----------WGTPFQ----QLKQVVEEPSPQLPAD---KFSAEFVDFTSQ 249
Query: 434 CLQKEPSERPT 444
           CL+K   ERPT
Sbjct: 250 CLKKNSKERPT 260

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 8/186 (4%)
Query: 193 RASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ 252
           +  FGD      +      +   +    + F+ + + +  L+H NL +LLG    +    
Sbjct: 31  KGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE-KGG 89
Query: 253 RMLIYERLFHGSLDRLIYGRSDGPPI-DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS 311
             ++ E +  GSL  + Y RS G  +   +  +K +L   + + +L E   F  ++ + +
Sbjct: 90  LYIVTEYMAKGSL--VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL-EGNNF--VHRDLA 144
Query: 312 TANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIV 371
             N+ + +D  AK+S +G       T              E L     + KS+VWSFGI+
Sbjct: 145 ARNVLVSEDNVAKVSDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 203
Query: 372 LLELLT 377
           L E+ +
Sbjct: 204 LWEIYS 209

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 8/186 (4%)
Query: 193 RASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ 252
           +  FGD      +      +   +    + F+ + + +  L+H NL +LLG    +    
Sbjct: 16  KGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG- 74
Query: 253 RMLIYERLFHGSLDRLIYGRSDGPPI-DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS 311
             ++ E +  GSL  + Y RS G  +   +  +K +L   + + +L  EG    ++ + +
Sbjct: 75  LYIVTEYMAKGSL--VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL--EGN-NFVHRDLA 129
Query: 312 TANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIV 371
             N+ + +D  AK+S +G       T              E L     + KS+VWSFGI+
Sbjct: 130 ARNVLVSEDNVAKVSDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 188
Query: 372 LLELLT 377
           L E+ +
Sbjct: 189 LWEIYS 194

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 34/242 (14%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+  L G   +      M+I E + +GSLD  +  R +      
Sbjct: 60  RDFLSEASIMGQFDHPNIIHLEGVVTK--CKPVMIITEYMENGSLDAFL--RKNDGRFTV 115
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +      G+ +L +      ++ + +  NI ++ +   K+S +G +  + E D  
Sbjct: 116 IQLVGMLRGIGSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMS-RVLEDDPE 171
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIV+ E+++  +              
Sbjct: 172 AAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE-------------- 217
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              RP+  D     +I   +   R   P+     +  + L C QKE S+RP    I   L
Sbjct: 218 ---RPYW-DMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNML 273
Query: 453 DR 454
           D+
Sbjct: 274 DK 275

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 61  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 115
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 116 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGT 172
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 214
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 215 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 63  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 117
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 118 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 174
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 175 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 216
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 217 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 261

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 61  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 115
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 116 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 172
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 214
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 215 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 34/242 (14%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+++ + +    HPN+  L G   +      M+I E + +GSLD  +  R +      
Sbjct: 54  RDFLSEASIMGQFDHPNIIHLEGVVTK--CKPVMIITEYMENGSLDAFL--RKNDGRFTV 109
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +      G+ +L +      ++ + +  NI ++ +   K+S +G +  + E D  
Sbjct: 110 IQLVGMLRGIGSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMS-RVLEDDPE 165
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIV+ E+++  +              
Sbjct: 166 AAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE-------------- 211
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              RP+  D     +I   +   R   P+     +  + L C QKE S+RP    I   L
Sbjct: 212 ---RPYW-DMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNML 267
Query: 453 DR 454
           D+
Sbjct: 268 DK 269

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 33/239 (13%)
Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI-------YGRSDGPPIDWNTRVKI 286
           QH N+  LLG     G    ++I E   +G L   +         + DG P++    +  
Sbjct: 108 QHENIVNLLGACTHGGP--VLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHF 165
Query: 287 ALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXX 346
           +   AQG+ FL  +     ++ + +  N+ +     AK+  +G A  I            
Sbjct: 166 SSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNA 222
Query: 347 ----XXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
                    E++   + T +S+VWS+GI+L E+ +   N                 P + 
Sbjct: 223 RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN---------------PYPGIL 267
Query: 403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI--FEELDRQESRK 459
            + +   ++    +   P  A + +  I   C   EP+ RPT + I  F +   QE R+
Sbjct: 268 VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDRR 326

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 61  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 115
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 116 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGT 172
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 214
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 215 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 32/240 (13%)
Query: 222 EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN 281
           +F+ +   +    H N+ +L G  ++      M+I E + +G+LD+ +  R         
Sbjct: 92  DFLGEAGIMGQFSHHNIIRLEGVISK--YKPMMIITEYMENGALDKFL--REKDGEFSVL 147
Query: 282 TRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI---PETD 338
             V +    A G+ +L        ++ + +  NI ++ +   K+S +G +  +   PE  
Sbjct: 148 QLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT 204
Query: 339 IXXXXXXX--XXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
                          E +     T  S+VWSFGIV+ E++T  +                
Sbjct: 205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGE---------------- 248
Query: 397 SRPF--LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
            RP+  L++   +  I D   +   P+     +  + ++C Q+E + RP    I   LD+
Sbjct: 249 -RPYWELSNHEVMKAIND-GFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 306

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 28/236 (11%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++FI +   +  L HP L +L G           L++E + HG L    Y R+       
Sbjct: 47  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGCLSD--YLRTQRGLFAA 102
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---T 337
            T + + L   +G+ +L E      ++ + +  N  + ++   K+S +G    + +   T
Sbjct: 103 ETLLGMCLDVCEGMAYLEEA---SVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 159
Query: 338 DIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                         E       + KS+VWSFG+++ E+ +     + + P E R     S
Sbjct: 160 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS-----EGKIPYENR-----S 209
Query: 398 RPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              + +D      +  P+L       A+  V  I   C ++ P +RP    +  +L
Sbjct: 210 NSEVVEDISTGFRLYKPRL-------ASTHVYQIMNHCWKERPEDRPAFSRLLRQL 258

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++F+ + + +    HPN+  L G   +  S   M++ E + +GSLD  +  ++DG     
Sbjct: 68  RDFLGEASIMGQFDHPNIIHLEGVVTK--SKPVMIVTEYMENGSLDTFL-KKNDGQ-FTV 123
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIX 340
              V +    + G+ +L + G    ++ + +  NI I+ +   K+S +G +  + E D  
Sbjct: 124 IQLVGMLRGISAGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLS-RVLEDDPE 179
Query: 341 XXXXX------XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                            E +     T  S+VWS+GIV+ E+++  +              
Sbjct: 180 AAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGE-------------- 225
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              RP+  +     +I   +   R   P+     +  + L C QKE + RP    I   L
Sbjct: 226 ---RPYW-EMTNQDVIKAVEEGYRLPSPMDCPAALYQLMLDCWQKERNSRPKFDEIVNML 281
Query: 453 DR 454
           D+
Sbjct: 282 DK 283

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 60  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 114
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 115 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGT 171
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 172 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 213
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 214 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 258

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 63  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 117
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 118 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 174
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 175 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 216
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 217 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 261

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 62  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 116
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 117 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 173
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 174 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 215
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 216 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 260

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 52/256 (20%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR---SDGPP 277
           +EF ++    A LQHPN+  LLG   +D      +I+    HG L   +  R   SD   
Sbjct: 74  EEFRHEAMLRARLQHPNVVCLLGVVTKD--QPLSMIFSYCSHGDLHEFLVMRSPHSDVGS 131
Query: 278 IDWNTRVKIAL----------CAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            D +  VK AL            A G+ +L        ++ + +T N+ +    + K+S 
Sbjct: 132 TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKISD 188
Query: 328 YGCAGHIPETD----IXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT------ 377
            G    +   D    +            E +  G  +  S++WS+G+VL E+ +      
Sbjct: 189 LGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY 248
Query: 378 -GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
            G  N D       R ++        DDC                     V  + + C  
Sbjct: 249 CGYSNQDVVEMIRNRQVLP-----CPDDC------------------PAWVYALMIECWN 285
Query: 437 KEPSERPTMRSIFEEL 452
           + PS RP  + I   L
Sbjct: 286 EFPSRRPRFKDIHSRL 301

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 59  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 113
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 114 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGT 170
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 212
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 213 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 257

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 52/256 (20%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR---SDGPP 277
           +EF ++    A LQHPN+  LLG   +D      +I+    HG L   +  R   SD   
Sbjct: 57  EEFRHEAMLRARLQHPNVVCLLGVVTKD--QPLSMIFSYCSHGDLHEFLVMRSPHSDVGS 114
Query: 278 IDWNTRVKIAL----------CAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSG 327
            D +  VK AL            A G+ +L        ++ + +T N+ +    + K+S 
Sbjct: 115 TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKISD 171
Query: 328 YGCAGHIPETD----IXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT------ 377
            G    +   D    +            E +  G  +  S++WS+G+VL E+ +      
Sbjct: 172 LGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPY 231
Query: 378 -GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
            G  N D       R ++        DDC                     V  + + C  
Sbjct: 232 CGYSNQDVVEMIRNRQVLP-----CPDDC------------------PAWVYALMIECWN 268
Query: 437 KEPSERPTMRSIFEEL 452
           + PS RP  + I   L
Sbjct: 269 EFPSRRPRFKDIHSRL 284

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 59  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 113
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 114 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 170
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 212
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 213 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 257

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 91/238 (38%), Gaps = 33/238 (13%)
Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI-------YGRSDGPPIDWNTRVKI 286
           QH N+  LLG     G    ++I E   +G L   +         + DG P++    +  
Sbjct: 100 QHENIVNLLGACTHGGP--VLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHF 157
Query: 287 ALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXX 346
           +   AQG+ FL  +     ++ + +  N+ +     AK+  +G A  I            
Sbjct: 158 SSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNA 214
Query: 347 ----XXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA 402
                    E++   + T +S+VWS+GI+L E+ +   N                 P + 
Sbjct: 215 RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN---------------PYPGIL 259
Query: 403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI--FEELDRQESR 458
            + +   ++    +   P  A + +  I   C   EP+ RPT + I  F +   QE R
Sbjct: 260 VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDR 317

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 33/250 (13%)
Query: 207 EATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL 265
           +  V  ++   Q  +E + N+V  +   QH N+ ++  + +    ++  ++ E L  G+L
Sbjct: 72  QVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEM--YKSYLVGEELWVLMEFLQGGAL 129
Query: 266 DRLIYGRSDGPPIDWNTRVKIALCAA--QGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA 323
             ++        +  N      +C A  Q L +LH +G    ++ +  + +I +  D   
Sbjct: 130 TDIV------SQVRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRV 180
Query: 324 KLSGYGCAGHIPETDIXXXXXXXXX---XXXETLERGLLTPKSNVWSFGIVLLELLTGRK 380
           KLS +G    I + D+               E + R L   + ++WS GI+++E++ G  
Sbjct: 181 KLSDFGFCAQISK-DVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEP 239
Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
              S  P +    ++ S P             P+LK     K +  + D   R L ++P 
Sbjct: 240 PYFSDSPVQAMKRLRDSPP-------------PKLKNSH--KVSPVLRDFLERMLVRDPQ 284
Query: 441 ERPTMRSIFE 450
           ER T + + +
Sbjct: 285 ERATAQELLD 294

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 57  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 111
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 112 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 168
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 169 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 210
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 211 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 255

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 97/252 (38%), Gaps = 28/252 (11%)
Query: 205 KFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGS 264
           K +  +  +   S    +FI +   +  L HP L +L G           L++E + HG 
Sbjct: 51  KDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGC 108
Query: 265 LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
           L    Y R+        T + + L   +G+ +L E      ++ + +  N  + ++   K
Sbjct: 109 LSD--YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIK 163
Query: 325 LSGYGCAGHIPE---TDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKN 381
           +S +G    + +   T              E       + KS+VWSFG+++ E+ +    
Sbjct: 164 VSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS---- 219
Query: 382 LDSRHPKEERNLVKWSRPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
            + + P E R     S   + +D      +  P+L       A+  V  I   C ++ P 
Sbjct: 220 -EGKIPYENR-----SNSEVVEDISTGFRLYKPRL-------ASTHVYQIMNHCWKERPE 266
Query: 441 ERPTMRSIFEEL 452
           +RP    +  +L
Sbjct: 267 DRPAFSRLLRQL 278

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 36  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIIIEFMT 93
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 94  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 148
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 149 HLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 208
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 209 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 252
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 253 NPSDRPSFAEIHQAFETMFQESSISDEVEK 282

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 28/236 (11%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++FI +   +  L HP L +L G           L++E + HG L    Y R+       
Sbjct: 47  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGCLSD--YLRTQRGLFAA 102
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---T 337
            T + + L   +G+ +L E      ++ + +  N  + ++   K+S +G    + +   T
Sbjct: 103 ETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 159
Query: 338 DIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                         E       + KS+VWSFG+++ E+ +     + + P E R     S
Sbjct: 160 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS-----EGKIPYENR-----S 209
Query: 398 RPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              + +D      +  P+L       A+  V  I   C ++ P +RP    +  +L
Sbjct: 210 NSEVVEDISTGFRLYKPRL-------ASTHVYQIMNHCWKERPEDRPAFSRLLRQL 258

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G + + +   S     D      
Sbjct: 63  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPRGEVYKELQKLSK---FDEQRTAT 117
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 118 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGT 174
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 175 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 216
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 217 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 261

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G + + +   S     D      
Sbjct: 63  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPRGEVYKELQKLSK---FDEQRTAT 117
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 118 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 174
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 175 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 216
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 217 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 261

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 28/236 (11%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++FI +   +  L HP L +L G           L++E + HG L    Y R+       
Sbjct: 45  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGCLSD--YLRTQRGLFAA 100
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---T 337
            T + + L   +G+ +L E      ++ + +  N  + ++   K+S +G    + +   T
Sbjct: 101 ETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 157
Query: 338 DIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                         E       + KS+VWSFG+++ E+ +     + + P E R     S
Sbjct: 158 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS-----EGKIPYENR-----S 207
Query: 398 RPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              + +D      +  P+L       A+  V  I   C ++ P +RP    +  +L
Sbjct: 208 NSEVVEDISTGFRLYKPRL-------ASTHVYQIMNHCWKERPEDRPAFSRLLRQL 256

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 61  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 115
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 116 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 172
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 214
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 215 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 61  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 115
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 116 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGT 172
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 214
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 215 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 58  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 112
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 113 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGT 169
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 170 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 211
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 212 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 256

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 28/236 (11%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++FI +   +  L HP L +L G           L++E + HG L    Y R+       
Sbjct: 50  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVFEFMEHGCLSD--YLRTQRGLFAA 105
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---T 337
            T + + L   +G+ +L E      ++ + +  N  + ++   K+S +G    + +   T
Sbjct: 106 ETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 162
Query: 338 DIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                         E       + KS+VWSFG+++ E+ +     + + P E R     S
Sbjct: 163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS-----EGKIPYENR-----S 212
Query: 398 RPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              + +D      +  P+L       A+  V  I   C ++ P +RP    +  +L
Sbjct: 213 NSEVVEDISTGFRLYKPRL-------ASTHVYQIMNHCWRERPEDRPAFSRLLRQL 261

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 55  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 109
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 110 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 166
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 167 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 208
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 209 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 253

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 11  NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 67
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 68  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 122
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXXXXXX 350
           L F H     + ++ +    N+ I+ + + KL+ +G A   G    T             
Sbjct: 123 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 179
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGR 379
              L     +   ++WS G +  E++T R
Sbjct: 180 EILLGXKYYSTAVDIWSLGCIFAEMVTRR 208

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXXXXXX 350
           L F H     + ++ +    N+ I+ + + KL+ +G A   G    T             
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 172
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGR 379
              L     +   ++WS G +  E++T R
Sbjct: 173 EILLGXKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 32/255 (12%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           +EF+++ + +   +HPN+ +L G      S   M++ E + +G+LD  +  R +      
Sbjct: 60  REFLSEASIMGQFEHPNIIRLEGVVT--NSMPVMILTEFMENGALDSFL--RLNDGQFTV 115
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---- 336
              V +    A G+ +L E      ++ + +  NI ++ +   K+S +G +  + E    
Sbjct: 116 IQLVGMLRGIASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSD 172
Query: 337 ---TDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERN 392
              T              E +     T  S+ WS+GIV+ E+++ G +       ++  N
Sbjct: 173 PTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVIN 232
Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            ++        D RL            P     ++  + L C QK+ + RP    +   L
Sbjct: 233 AIE-------QDYRLPP----------PPDCPTSLHQLMLDCWQKDRNARPRFPQVVSAL 275
Query: 453 DRQESRKSSSSTVRR 467
           D+     +S   V R
Sbjct: 276 DKMIRNPASLKIVAR 290

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 61  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 115
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 116 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGT 172
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E  +   K ++WS G++  E L G+                   PF A+  
Sbjct: 173 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 214
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 215 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 259

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 26/225 (11%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +V   + L+HPN+ +L G+     + +  LI E    G++ R +   S     D      
Sbjct: 63  EVEIQSHLRHPNILRLYGYF--HDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTAT 117
Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXX 345
                A  L++ H +   + ++ +    N+ +      K++ +G + H P +        
Sbjct: 118 YITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGT 174
Query: 346 XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC 405
                 E +E      K ++WS G++  E L G+                   PF A+  
Sbjct: 175 LDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKP------------------PFEANTY 216
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + +     +++  FP        D+  R L+  PS+RP +R + E
Sbjct: 217 QETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPXLREVLE 261

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 24/235 (10%)
Query: 225 NDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRV 284
            +++ L +L H ++ K  G     G+    L+ E +  GSL   +   S G         
Sbjct: 82  QEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIG-------LA 134
Query: 285 KIALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXX 341
           ++ L A Q   G+ +LH +     ++ + +  N+ +D D   K+  +G A  +PE     
Sbjct: 135 QLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXY 191
Query: 342 XXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRH--PKEERNLV 394
                          E L+       S+VWSFG+ L ELLT   + DS    P +   L+
Sbjct: 192 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT---HCDSSQSPPTKFLELI 248
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
             ++  +    RL+ +++   +   P K    V  +   C + E S RPT  ++ 
Sbjct: 249 GIAQGQMT-VLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLI 302

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 32/255 (12%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           +EF+++ + +   +HPN+ +L G      S   M++ E + +G+LD  +  R +      
Sbjct: 62  REFLSEASIMGQFEHPNIIRLEGVVT--NSMPVMILTEFMENGALDSFL--RLNDGQFTV 117
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI------ 334
              V +    A G+ +L E      ++ + +  NI ++ +   K+S +G +  +      
Sbjct: 118 IQLVGMLRGIASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSD 174
Query: 335 -PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERN 392
             ET              E +     T  S+ WS+GIV+ E+++ G +       ++  N
Sbjct: 175 PTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVIN 234
Query: 393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
            ++        D RL            P     ++  + L C QK+ + RP    +   L
Sbjct: 235 AIE-------QDYRLPP----------PPDCPTSLHQLMLDCWQKDRNARPRFPQVVSAL 277
Query: 453 DRQESRKSSSSTVRR 467
           D+     +S   V R
Sbjct: 278 DKMIRNPASLKIVAR 292

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY 270
           T+LNP+S  +++   +V  +  L HPN+ KL  F   +      L+ E    G +   + 
Sbjct: 51  TQLNPTS--LQKLFREVRIMKILNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 106
Query: 271 GRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
                   +   + +  + A Q   + H++     ++ +    N+ +D D + K++ +G 
Sbjct: 107 AHGRMKEKEARAKFRQIVSAVQ---YCHQK---YIVHRDLKAENLLLDGDMNIKIADFGF 160
Query: 331 AGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
           +      +               L +G     P+ +VWS G++L  L++G    D ++ K
Sbjct: 161 SNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK 220
Query: 389 EERNLV---KWSRPF-LADDC 405
           E R  V   K+  PF ++ DC
Sbjct: 221 ELRERVLRGKYRIPFYMSTDC 241

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 40  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 97
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 98  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 152
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 153 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 213 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 256
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 257 NPSDRPSFAEIHQAFETMFQESSISDEVEK 286

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 36  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 93
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 94  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 148
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 149 HLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 208
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 209 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 252
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 253 NPSDRPSFAEIHQAFETMFQESSISDEVEK 282

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 109/271 (40%), Gaps = 31/271 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 33  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIITEFMT 90
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 91  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 145
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 146 HLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 205
Query: 378 -GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
            G        P +   L       L  D R+            P      V ++   C Q
Sbjct: 206 YGMSPYPGIDPSQVYEL-------LEKDYRMER----------PEGCPEKVYELMRACWQ 248
Query: 437 KEPSERPTMRSIFEELDRQESRKSSSSTVRR 467
             PS+RP+   I +  +      S S  V +
Sbjct: 249 WNPSDRPSFAEIHQAFETMFQESSISDEVEK 279

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 48  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 105
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 106 YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 160
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 161 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 220
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 221 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 264
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 265 NPSDRPSFAEIHQAFETMFQESSISDEVEK 294

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 37  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 94
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 95  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 149
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 150 HLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 210 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 253
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 254 NPSDRPSFAEIHQAFETMFQESSISDEVEK 283

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 14/208 (6%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGL 294
           HPN+ KLL        ++  L++E L     D +      G P+         L   QGL
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQLL--QGL 116
Query: 295 TFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXXE 352
            F H     + ++ +    N+ I+ + + KL+ +G A    +P                E
Sbjct: 117 AFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPE 173
Query: 353 TLER-GLLTPKSNVWSFGIVLLELLTGR 379
            L      +   ++WS G +  E++T R
Sbjct: 174 ILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 38/265 (14%)
Query: 218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSD-G 275
           Q  +   + +  + SL H ++ +LLG     GS  + L+ + L  GSL D +   R   G
Sbjct: 75  QSFQAVTDHMLAIGSLDHAHIVRLLGLCP--GSSLQ-LVTQYLPLGSLLDHVRQHRGALG 131
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
           P +  N  V+IA    +G+ +L E G    ++   +  N+ +      +++ +G A  +P
Sbjct: 132 PQLLLNWGVQIA----KGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLP 184
Query: 336 ETD----IXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER 391
             D                 E++  G  T +S+VWS+G+ + EL+T              
Sbjct: 185 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFG------------ 232
Query: 392 NLVKWSRPFLADDCRLSLIMDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSI 448
                + P+     RL+ + D   KG     P      V  + ++C   + + RPT + +
Sbjct: 233 -----AEPYAG--LRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKEL 285
Query: 449 FEELDRQESRKSSSSTVRRASVEGF 473
             E  R          ++R S  G 
Sbjct: 286 ANEFTRMARDPPRYLVIKRESGPGI 310

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L+F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LSFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 37  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 94
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 95  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 149
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 150 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 210 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 253
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 254 NPSDRPSFAEIHQAFETMFQESSISDEVEK 283

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 37  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 94
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 95  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 149
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 150 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 210 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 253
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 254 NPSDRPSFAEIHQAFETMFQESSISDEVEK 283

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 159 IGEGSTGIVCIAT----VRSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 213
Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   Q L+ LH +
Sbjct: 214 --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQ 266
Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CAGHIPETDIXXXXXXXXX-XXXETLERGL 358
           G    ++ +  + +I +  D   KLS +G CA    E                E + R  
Sbjct: 267 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLP 323
Query: 359 LTPKSNVWSFGIVLLELLTG 378
             P+ ++WS GI+++E++ G
Sbjct: 324 YGPEVDIWSLGIMVIEMVDG 343

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 281 KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIITEFMT 338
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++   +  N  + ++
Sbjct: 339 YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGEN 393
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 394 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 453
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 454 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 497
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 498 NPSDRPSFAEIHQAFETMFQESSISDEVEK 527

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 149 IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 204
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 205 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 261
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 262 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 316
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 317 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 361

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 11  NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 67
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 68  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 122
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 123 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 179
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 180 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 208

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELN 59
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 60  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 114
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 115 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 171
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 172 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 2   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 58
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 59  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 115
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 116 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 171 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 8   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 65  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 119
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 120 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 176
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 177 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 205

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 108/271 (39%), Gaps = 31/271 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 33  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIITEFMT 90
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 91  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 145
Query: 321 FSAKLSGYGCAGHIPETDIXXXXXXX---XXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +                    E+L     + KS+VW+FG++L E+ T
Sbjct: 146 HLVKVADFGLSRLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 205
Query: 378 -GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
            G        P +   L       L  D R+            P      V ++   C Q
Sbjct: 206 YGMSPYPGIDPSQVYEL-------LEKDYRMER----------PEGCPEKVYELMRACWQ 248
Query: 437 KEPSERPTMRSIFEELDRQESRKSSSSTVRR 467
             PS+RP+   I +  +      S S  V +
Sbjct: 249 WNPSDRPSFAEIHQAFETMFQESSISDEVEK 279

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 38/265 (14%)
Query: 218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSD-G 275
           Q  +   + +  + SL H ++ +LLG     GS  + L+ + L  GSL D +   R   G
Sbjct: 57  QSFQAVTDHMLAIGSLDHAHIVRLLGLCP--GSSLQ-LVTQYLPLGSLLDHVRQHRGALG 113
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
           P +  N  V+IA    +G+ +L E G    ++   +  N+ +      +++ +G A  +P
Sbjct: 114 PQLLLNWGVQIA----KGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLP 166
Query: 336 ETD----IXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER 391
             D                 E++  G  T +S+VWS+G+ + EL+T              
Sbjct: 167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFG------------ 214
Query: 392 NLVKWSRPFLADDCRLSLIMDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSI 448
                + P+     RL+ + D   KG     P      V  + ++C   + + RPT + +
Sbjct: 215 -----AEPYAG--LRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKEL 267
Query: 449 FEELDRQESRKSSSSTVRRASVEGF 473
             E  R          ++R S  G 
Sbjct: 268 ANEFTRMARDPPRYLVIKRESGPGI 292

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 39  IGEGSTGIVCIAT----VRSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 93
Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   Q L+ LH +
Sbjct: 94  --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQ 146
Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CA---GHIPETDIXXXXXXXXXXXXETLER 356
           G    ++ +  + +I +  D   KLS +G CA     +P                E + R
Sbjct: 147 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR--KXLVGTPYWMAPELISR 201
Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
               P+ ++WS GI+++E++ G     +  P +   +++ + P             P+LK
Sbjct: 202 LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PRLK 248
Query: 417 GRFPLKAARTVADIALRCLQKEPSERPT 444
                K + ++     R L ++P++R T
Sbjct: 249 NLH--KVSPSLKGFLDRLLVRDPAQRAT 274

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLI 269
           T+LN SS  +++   +V  +  L HPN+ KL  F   +      L+ E    G + D L+
Sbjct: 50  TQLNSSS--LQKLFREVRIMKVLNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 105
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
              + G   +   R K     +  + + H++     ++ +    N+ +D D + K++ +G
Sbjct: 106 ---AHGRMKEKEARAKFRQIVS-AVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFG 158
Query: 330 CAGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +      +               L +G     P+ +VWS G++L  L++G    D ++ 
Sbjct: 159 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 218
Query: 388 KEERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           KE R  V   K+  PF ++ DC    +  LI++P  +G
Sbjct: 219 KELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRG 256

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLI 269
           T+LN SS  +++   +V  +  L HPN+ KL  F   +      L+ E    G + D L+
Sbjct: 50  TQLNSSS--LQKLFREVRIMKVLNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 105
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
              + G   +   R K     +  + + H++     ++ +    N+ +D D + K++ +G
Sbjct: 106 ---AHGRMKEKEARAKFRQIVS-AVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFG 158
Query: 330 CAGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +      +               L +G     P+ +VWS G++L  L++G    D ++ 
Sbjct: 159 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 218
Query: 388 KEERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           KE R  V   K+  PF ++ DC    +  LI++P  +G
Sbjct: 219 KELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRG 256

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 61  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 115
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 116 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 172
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 173 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 226

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 60  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 114
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 115 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 171
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 172 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 3   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 59
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 60  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 116
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 117 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 172 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 2   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 58
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 59  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 115
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 116 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 171 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLI 269
           T+LN SS  +++   +V  +  L HPN+ KL  F   +      L+ E    G + D L+
Sbjct: 50  TQLNSSS--LQKLFREVRIMKVLNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 105
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
              + G   +   R K     +  + + H++     ++ +    N+ +D D + K++ +G
Sbjct: 106 ---AHGRMKEKEARAKFRQIVS-AVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFG 158
Query: 330 CAGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +      +               L +G     P+ +VWS G++L  L++G    D ++ 
Sbjct: 159 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 218
Query: 388 KEERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           KE R  V   K+  PF ++ DC    +  LI++P  +G
Sbjct: 219 KELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRG 256

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 35  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIIIEFMT 92
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 93  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 147
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 208 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 251
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 252 NPSDRPSFAEIHQAFETMFQESSISDEVEK 281

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 35  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIIIEFMT 92
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 93  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 147
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 208 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 251
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 252 NPSDRPSFAEIHQAFETMFQESSISDEVEK 281

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 24/235 (10%)
Query: 225 NDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRV 284
            +++ L +L H ++ K  G     G     L+ E +  GSL   +   S G         
Sbjct: 65  QEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIG-------LA 117
Query: 285 KIALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXX 341
           ++ L A Q   G+ +LH +     ++   +  N+ +D D   K+  +G A  +PE     
Sbjct: 118 QLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 174
Query: 342 XXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRH--PKEERNLV 394
                          E L+       S+VWSFG+ L ELLT   + DS    P +   L+
Sbjct: 175 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT---HCDSSQSPPTKFLELI 231
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
             ++  +    RL+ +++   +   P K    V  +   C + E S RPT  ++ 
Sbjct: 232 GIAQGQMT-VLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLI 285

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 2   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 58
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 59  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 115
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 116 --QGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 171 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 58  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 112
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 113 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 169
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 170 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 223

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 60  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 114
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 115 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 171
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 172 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 1   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 57
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 58  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 114
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 115 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 169
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 170 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLI 269
           T+LN SS  +++   +V  +  L HPN+ KL  F   +      L+ E    G + D L+
Sbjct: 50  TQLNSSS--LQKLFREVRIMKVLNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 105
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
              + G   +   R K     +  + + H++     ++ +    N+ +D D + K++ +G
Sbjct: 106 ---AHGRMKEKEARAKFRQIVS-AVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFG 158
Query: 330 CAGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +      +               L +G     P+ +VWS G++L  L++G    D ++ 
Sbjct: 159 FSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 218
Query: 388 KEERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           KE R  V   K+  PF ++ DC    +  LI++P  +G
Sbjct: 219 KELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRG 256

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 1   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 57
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 58  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 114
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXX 347
             QGL F H     + ++ +    N+ I+ + + KL+ +G A    +P            
Sbjct: 115 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 169
Query: 348 XXXXETLER-GLLTPKSNVWSFGIVLLELLTGR 379
               E L      +   ++WS G +  E++T R
Sbjct: 170 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA--GHIPETDIXXXXXXXXXXX 350
           GL FLH +G    +Y +    NI +DKD   K++ +G      + +              
Sbjct: 131 GLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIA 187
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI 410
            E L         + WSFG++L E+L G+     +  +E  + ++   PF          
Sbjct: 188 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPF---------- 237
Query: 411 MDPQLKGRFPLKAARTVADIALRCLQKEPSER----------PTMRSI-FEELDRQE 456
                   +P    +   D+ ++   +EP +R          P  R I +EEL+R+E
Sbjct: 238 --------YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKE 286

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 58  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGXL--LDYVREHK 112
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 113 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 169
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 170 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 223

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 91  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 145
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 146 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 202
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 203 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 256

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 111
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 1   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 57
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 58  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 114
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 115 --QGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 169
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 170 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA--GHIPETDIXXXXXXXXXXX 350
           GL FLH +G    +Y +    NI +DKD   K++ +G      + +              
Sbjct: 130 GLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIA 186
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI 410
            E L         + WSFG++L E+L G+     +  +E  + ++   PF          
Sbjct: 187 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPF---------- 236
Query: 411 MDPQLKGRFPLKAARTVADIALRCLQKEPSER----------PTMRSI-FEELDRQE 456
                   +P    +   D+ ++   +EP +R          P  R I +EEL+R+E
Sbjct: 237 --------YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKE 285

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLI 269
           T+LN SS  +++   +V  +  L HPN+ KL  F   +      L+ E    G + D L+
Sbjct: 50  TQLNSSS--LQKLFREVRIMKVLNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 105
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
              + G   +   R K     +  + + H++     ++ +    N+ +D D + K++ +G
Sbjct: 106 ---AHGRMKEKEARAKFRQIVS-AVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFG 158
Query: 330 CAGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +      +               L +G     P+ +VWS G++L  L++G    D ++ 
Sbjct: 159 FSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 218
Query: 388 KEERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           KE R  V   K+  PF ++ DC    +  LI++P  +G
Sbjct: 219 KELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRG 256

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXXXXXX 350
           L F H     + ++ +    N+ I+ + + KL+ +G A   G    T             
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 172
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGR 379
              L     +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 64  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 118
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 119 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 175
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 176 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 229

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 37  IGEGSTGIVCIAT----VRSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 91
Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   Q L+ LH +
Sbjct: 92  --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQ 144
Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CA---GHIPETDIXXXXXXXXXXXXETLER 356
           G    ++ +  + +I +  D   KLS +G CA     +P                E + R
Sbjct: 145 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR--KXLVGTPYWMAPELISR 199
Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
               P+ ++WS GI+++E++ G     +  P +   +++ + P             P+LK
Sbjct: 200 LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PRLK 246
Query: 417 GRFPLKAARTVADIALRCLQKEPSERPT 444
                K + ++     R L ++P++R T
Sbjct: 247 NLH--KVSPSLKGFLDRLLVRDPAQRAT 272

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 40  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIITEFMT 97
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 98  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 152
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 153 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 213 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 256
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 257 NPSDRPSFAEIHQAFETMFQESSISDEVEK 286

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 59  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 113
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 114 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 170
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 171 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 224

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 82  IGEGSTGIVCIAT----VRSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 136
Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   Q L+ LH +
Sbjct: 137 --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQ 189
Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CA---GHIPETDIXXXXXXXXXXXXETLER 356
           G    ++ +  + +I +  D   KLS +G CA     +P                E + R
Sbjct: 190 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK--XLVGTPYWMAPELISR 244
Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
               P+ ++WS GI+++E++ G     +  P +   +++ + P             P+LK
Sbjct: 245 LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PRLK 291
Query: 417 GRFPLKAARTVADIALRCLQKEPSERPT 444
                K + ++     R L ++P++R T
Sbjct: 292 NLH--KVSPSLKGFLDRLLVRDPAQRAT 317

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 30  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 89
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 90  IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 145
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 146 LVSCTYQLARGMEYLASQ---KCIHRDLTARNVLVTENNVMKIADFGLARDINNIDYYKK 202
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 203 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 257
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 258 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 302

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 3   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 59
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 60  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 116
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 117 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 172 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 67  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 121
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 122 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 178
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 179 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 232

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 60  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 114
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXXXXXX 350
           L F H     + ++ +    N+ I+ + + KL+ +G A   G    T             
Sbjct: 115 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 171
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGR 379
              L     +   ++WS G +  E++T R
Sbjct: 172 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 4   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 60
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L + +   +  G P+         L 
Sbjct: 61  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL 117
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 118 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 172
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 173 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 205

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 24/235 (10%)
Query: 225 NDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRV 284
            +++ L +L H ++ K  G     G     L+ E +  GSL   +   S G         
Sbjct: 65  QEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDYLPRHSIG-------LA 117
Query: 285 KIALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXX 341
           ++ L A Q   G+ +LH +     ++   +  N+ +D D   K+  +G A  +PE     
Sbjct: 118 QLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 174
Query: 342 XXXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRH--PKEERNLV 394
                          E L+       S+VWSFG+ L ELLT   + DS    P +   L+
Sbjct: 175 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT---HCDSSQSPPTKFLELI 231
Query: 395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
             ++  +    RL+ +++   +   P K    V  +   C + E S RPT  ++ 
Sbjct: 232 GIAQGQMT-VLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLI 285

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 60  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 114
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 115 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 172 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 225

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 60  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 114
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 115 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 171
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 172 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 35  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIITEFMT 92
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 93  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 147
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 208 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 251
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 252 NPSDRPSFAEIHQAFETMFQESSISDEVEK 281

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 111
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 28  IGEGSTGIVCIAT----VRSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 82
Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   Q L+ LH +
Sbjct: 83  --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQ 135
Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CA---GHIPETDIXXXXXXXXXXXXETLER 356
           G    ++ +  + +I +  D   KLS +G CA     +P                E + R
Sbjct: 136 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR--KXLVGTPYWMAPELISR 190
Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
               P+ ++WS GI+++E++ G     +  P +   +++ + P             P+LK
Sbjct: 191 LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PRLK 237
Query: 417 GRFPLKAARTVADIALRCLQKEPSERPT 444
                K + ++     R L ++P++R T
Sbjct: 238 NLH--KVSPSLKGFLDRLLVRDPAQRAT 263

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 5   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 62  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 116
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXXXXXX 350
           L F H     + ++ +    N+ I+ + + KL+ +G A   G    T             
Sbjct: 117 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 173
Query: 351 XETLERGLLTPKSNVWSFGIVLLELLTGR 379
              L     +   ++WS G +  E++T R
Sbjct: 174 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 202

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 35  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 94
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 95  IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 150
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 151 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 207
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 208 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 262
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 263 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 307

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCKL 241
           I EG + ++  A+      +S K  A V +++   Q  +E + N+V  +   QH N+ ++
Sbjct: 32  IGEGSTGIVCIAT----VRSSGKLVA-VKKMDLRKQQRRELLFNEVVIMRDYQHENVVEM 86
Query: 242 LGFHARDGSDQRMLIYERLFHGSL-DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             +++    D+  ++ E L  G+L D + + R +   I       + L   Q L+ LH +
Sbjct: 87  --YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI-----AAVCLAVLQALSVLHAQ 139
Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYG-CA---GHIPETDIXXXXXXXXXXXXETLER 356
           G    ++ +  + +I +  D   KLS +G CA     +P                E + R
Sbjct: 140 G---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR--KXLVGTPYWMAPELISR 194
Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
               P+ ++WS GI+++E++ G     +  P +   +++ + P             P+LK
Sbjct: 195 LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------PRLK 241
Query: 417 GRFPLKAARTVADIALRCLQKEPSERPT 444
                K + ++     R L ++P++R T
Sbjct: 242 NLH--KVSPSLKGFLDRLLVRDPAQRAT 267

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 32  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 91
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 92  IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 147
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 148 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 204
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 205 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 259
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 260 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 304

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 35  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 92
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 93  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 147
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 208 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 251
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 252 NPSDRPSFAEIHQAFETMFQESSISDEVEK 281

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 60  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 114
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 115 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 172 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 225

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 111
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 4   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E L H  L + +   +  G P+         L   QG
Sbjct: 61  HPNIVKLLD--VIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLL--QG 115
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 116 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAP 172
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 173 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 201

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
Query: 232 SLQHPNLCKLLGFHARDGSDQRMLIYERLFH--GSLDRLIYGRSDGPPIDWNTRVKIALC 289
            ++H NL + +    R  + +  L     FH  GSL   + G      I WN    +A  
Sbjct: 65  GMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNI----ITWNELCHVAET 120
Query: 290 AAQGLTFLHEEGPF--------QAMYNEFSTANIQIDKDFSAKLSGYGCAGHI----PET 337
            ++GL++LHE+ P+           + +F + N+ +  D +A L+ +G A       P  
Sbjct: 121 MSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPG 180
Query: 338 DIXXXXXXXXXXXXETLERGLLTPKS-----NVWSFGIVLLELLTGRKNLDS 384
           D             E LE  +   +      ++++ G+VL EL++  K  D 
Sbjct: 181 DTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADG 232

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 63  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 117
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 118 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 174
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 175 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 228

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGXL--LDYVREHK 111
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 60  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 114
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 115 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 172 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 225

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 64  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 118
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 119 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 175
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 176 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 229

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 64  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 118
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 119 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 175
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 176 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 229

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 54  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 108
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 109 DNIGSQYLLNWCVQIAEGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 165
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 166 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 219

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 82  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 136
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 137 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 193
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 194 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 247

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 59  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 113
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 114 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 170
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 171 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 224

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 51  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 105
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 106 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 162
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 163 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 216

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 60  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 114
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 115 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 171
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 172 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 225

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IIHLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IITLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 110/270 (40%), Gaps = 29/270 (10%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 242 KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIITEFMT 299
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++   +  N  + ++
Sbjct: 300 YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGEN 354
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 355 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 414
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 415 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 458
Query: 438 EPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            PS+RP+   I +  +      S S  V +
Sbjct: 459 NPSDRPSFAEIHQAFETMFQESSISDEVEK 488

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 14/212 (6%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 3   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 59
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCA 290
             L HPN+ KLL        ++  L++E L     D +      G P+         L  
Sbjct: 60  KELNHPNIVKLLD--VIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLL- 116
Query: 291 AQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXXX 347
            QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T          
Sbjct: 117 -QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 172
Query: 348 XXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                 L     +   ++WS G +  E++T R
Sbjct: 173 RAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKN 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 111
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 14/212 (6%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 2   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 58
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCA 290
             L HPN+ KLL        ++  L++E L     D +      G P+         L  
Sbjct: 59  KELNHPNIVKLLD--VIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLL- 115
Query: 291 AQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXX 348
            QGL F H     + ++ +    N+ I+ + + KL+ +G A    +P             
Sbjct: 116 -QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWY 171
Query: 349 XXXETLER-GLLTPKSNVWSFGIVLLELLTGR 379
              E L      +   ++WS G +  E++T R
Sbjct: 172 RAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEXSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 40  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIIIEFMT 97
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 98  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 152
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 153 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 213 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 256
Query: 438 EPSERPTMRSIFEELD 453
            PS+RP+   I +  +
Sbjct: 257 NPSDRPSFAEIHQAFE 272

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 59  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 113
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 114 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 170
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 171 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 224

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 33/266 (12%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 33  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPFYIIIEFMT 90
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   +     + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 91  YGNL--LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 145
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 146 HLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 205
Query: 378 -GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
            G        P +   L       L  D R+            P      V ++   C Q
Sbjct: 206 YGMSPYPGIDPSQVYEL-------LEKDYRMER----------PEGCPEKVYELMRACWQ 248
Query: 437 KEPSERPTMRSIFEELDR--QESRKS 460
             PS+RP+   I +  +   QES  S
Sbjct: 249 WNPSDRPSFAEIHQAFETMFQESSIS 274

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 59  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 113
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 114 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 170
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 171 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 224

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 40  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 97
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 98  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 152
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 153 HLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 213 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 256
Query: 438 EPSERPTMRSIFEELD 453
            PS+RP+   I +  +
Sbjct: 257 NPSDRPSFAEIHQAFE 272

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 61  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLIMQLMPFGCL--LDYVREHK 115
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 116 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 172
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 173 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 226

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 28/236 (11%)
Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
           ++FI +   +  L HP L +L G           L+ E + HG L    Y R+       
Sbjct: 48  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAP--ICLVTEFMEHGCLSD--YLRTQRGLFAA 103
Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE---T 337
            T + + L   +G+ +L E      ++ + +  N  + ++   K+S +G    + +   T
Sbjct: 104 ETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 160
Query: 338 DIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                         E       + KS+VWSFG+++ E+ +     + + P E R     S
Sbjct: 161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS-----EGKIPYENR-----S 210
Query: 398 RPFLADDCRLSL-IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
              + +D      +  P+L       A+  V  I   C ++ P +RP    +  +L
Sbjct: 211 NSEVVEDISTGFRLYKPRL-------ASTHVYQIMNHCWRERPEDRPAFSRLLRQL 259

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 211 TRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLI 269
           T+LN SS  +++   +V  +  L HPN+ KL  F   +      L+ E    G + D L+
Sbjct: 43  TQLNSSS--LQKLFREVRIMKVLNHPNIVKL--FEVIETEKTLYLVMEYASGGEVFDYLV 98
Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
              + G   +   R K     +  + + H++     ++ +    N+ +D D + K++ +G
Sbjct: 99  ---AHGWMKEKEARAKFRQIVS-AVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFG 151
Query: 330 CAGHIPETDIXXXXXXXXXXXXETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +      +               L +G     P+ +VWS G++L  L++G    D ++ 
Sbjct: 152 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 211
Query: 388 KEERNLV---KWSRPF-LADDC----RLSLIMDPQLKG 417
           KE R  V   K+  PF ++ DC    +  LI++P  +G
Sbjct: 212 KELRERVLRGKYRIPFYMSTDCENLLKKFLILNPSKRG 249

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 40  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 97
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 98  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 152
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 153 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 213 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 256
Query: 438 EPSERPTMRSIFEELD 453
            PS+RP+   I +  +
Sbjct: 257 NPSDRPSFAEIHQAFE 272

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 38/251 (15%)
Query: 204 KKFEATVTRLNPSSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIYERLFH 262
           K+  ATV     +SQ  K  + D++ +  ++  P      G   R+G    + I   L  
Sbjct: 65  KRIRATV-----NSQEQKRLLXDLDISXRTVDCPFTVTFYGALFREGD---VWICXELXD 116
Query: 263 GSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
            SLD+      D G  I  +   KIA+   + L  LH +     ++ +   +N+ I+   
Sbjct: 117 TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALG 174
Query: 322 SAKLSGYGCAGHI-----PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELL 376
             K   +G +G++      + D               L +   + KS++WS GI  +EL 
Sbjct: 175 QVKXCDFGISGYLVDDVAKDIDAGCKPYXAPERINPELNQKGYSVKSDIWSLGITXIELA 234
Query: 377 TGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLKGRFPLKAARTVADIALR 433
             R   DS           W  PF     +L  +++   PQL      K +    D   +
Sbjct: 235 ILRFPYDS-----------WGTPFQ----QLKQVVEEPSPQLPAD---KFSAEFVDFTSQ 276
Query: 434 CLQKEPSERPT 444
           CL+K   ERPT
Sbjct: 277 CLKKNSKERPT 287

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG    ++ Y     G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGPLYVIVAYAS--KGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 18/171 (10%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           ++  L +L H ++ K  G     G     L+ E +  GSL        D  P       +
Sbjct: 61  EIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSL-------RDYLPRHCVGLAQ 113
Query: 286 IALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
           + L A Q   G+ +LH +     ++   +  N+ +D D   K+  +G A  +PE      
Sbjct: 114 LLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 170
Query: 343 XXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
                         E L+       S+VWSFG+ L ELLT   +  S H K
Sbjct: 171 VREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTK 221

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 18/171 (10%)
Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           ++  L +L H ++ K  G     G     L+ E +  GSL        D  P       +
Sbjct: 60  EIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSL-------RDYLPRHCVGLAQ 112
Query: 286 IALCAAQ---GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
           + L A Q   G+ +LH +     ++   +  N+ +D D   K+  +G A  +PE      
Sbjct: 113 LLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 169
Query: 343 XXX-----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
                         E L+       S+VWSFG+ L ELLT   +  S H K
Sbjct: 170 VREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTK 220

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 43/255 (16%)
Query: 207 EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           E  ++R+  SS+  +E   +V  LA+++HPN+ +       +GS    ++ +    G L 
Sbjct: 56  EINISRM--SSKEREESRREVAVLANMKHPNIVQYRESFEENGS--LYIVMDYCEGGDLF 111
Query: 267 RLIYGR-----SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
           + I  +      +   +DW  ++ +AL        LH          +  + NI + KD 
Sbjct: 112 KRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHR---------DIKSQNIFLTKDG 162
Query: 322 SAKLSGYGCAGHIPETD--IXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
           + +L  +G A  +  T                E  E      KS++W+ G VL EL T +
Sbjct: 163 TVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLK 222
Query: 380 KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP---LKAARTVADIALRCLQ 436
              ++   K   NLV            L +I      G FP   L  +  +  +  +  +
Sbjct: 223 HAFEAGSMK---NLV------------LKII-----SGSFPPVSLHYSYDLRSLVSQLFK 262
Query: 437 KEPSERPTMRSIFEE 451
           + P +RP++ SI E+
Sbjct: 263 RNPRDRPSVNSILEK 277

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 39  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 96
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 97  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 151
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 152 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 211
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 212 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 255
Query: 438 EPSERPTMRSIFEELD 453
            PS+RP+   I +  +
Sbjct: 256 NPSDRPSFAEIHQAFE 271

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 35  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 92
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 93  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 147
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 208 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 251
Query: 438 EPSERPTMRSIFEELD 453
            PS+RP+   I +  +
Sbjct: 252 NPSDRPSFAEIHQAFE 267

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 59  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 113
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 114 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 170
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 171 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 224

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 16/209 (7%)
Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59
Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQG 293
           HPN+ KLL        ++  L++E + H  L   +   +  G P+         L   QG
Sbjct: 60  HPNIVKLLD--VIHTENKLYLVFEHV-HQDLKTFMDASALTGIPLPLIKSYLFQLL--QG 114
Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH--IPETDIXXXXXXXXXXXX 351
           L F H     + ++ +    N+ I+ + + KL+ +G A    +P                
Sbjct: 115 LAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 171
Query: 352 ETLER-GLLTPKSNVWSFGIVLLELLTGR 379
           E L      +   ++WS G +  E++T R
Sbjct: 172 EILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 111
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 168
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG     +I E    G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGP--LYVIVEYASKGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   +++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMRIADFGLARDINNIDYYKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTL 230
            +  NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L
Sbjct: 3   GSMENFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLL 59
Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALC 289
             L HPN+ KLL        ++  L++E L H  L   +   +  G P+         L 
Sbjct: 60  KELNHPNIVKLLD--VIHTENKLYLVFEFL-HQDLKTFMDASALTGIPLPLIKSYLFQLL 116
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA---GHIPETDIXXXXXXX 346
             QGL F H     + ++ +    N+ I+ + + KL+ +G A   G    T         
Sbjct: 117 --QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTGR 379
                  L     +   ++WS G +  E++T R
Sbjct: 172 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 14/221 (6%)
Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEAT-VTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
           + +  G    +Y+  +  D    K   A  V R N S +  KE +++   +A +  P + 
Sbjct: 23  KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVS 82
Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           +LLG      +    L+ + + +G L  L + R +   +     +   +  A+G+++L +
Sbjct: 83  RLLGICL---TSTVQLVTQLMPYGCL--LDHVRENRGRLGSQDLLNWCMQIAKGMSYLED 137
Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG--HIPETDIXXXXXXX--XXXXXETLE 355
               + ++ + +  N+ +      K++ +G A    I ET+               E++ 
Sbjct: 138 ---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESIL 194
Query: 356 RGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK 395
           R   T +S+VWS+G+ + EL+T G K  D    +E  +L++
Sbjct: 195 RRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLE 235

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG      +    LI + +  G L  L Y R   
Sbjct: 64  SPKANKEILDEAYVMASVDNPHVCRLLGICL---TSTVQLITQLMPFGCL--LDYVREHK 118
Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI- 334
             I     +   +  A+G+ +L +    + ++ + +  N+ +      K++ +G A  + 
Sbjct: 119 DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLG 175
Query: 335 ---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
               E               E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 176 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 229

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 29/256 (11%)
Query: 204 KKFEATVT--RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF 261
           KK+  TV    L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + 
Sbjct: 35  KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMT 92
Query: 262 HGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD 320
           +G+L  L Y R  +   ++    + +A   +  + +L ++     ++ + +  N  + ++
Sbjct: 93  YGNL--LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGEN 147
Query: 321 FSAKLSGYGCAGHI---PETDIXXXXXXXXXXXXETLERGLLTPKSNVWSFGIVLLELLT 377
              K++ +G +  +     T              E+L     + KS+VW+FG++L E+ T
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 S +P               D  ++  +++   +   P      V ++   C Q 
Sbjct: 208 YGM---SPYPG-------------IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQW 251
Query: 438 EPSERPTMRSIFEELD 453
            PS+RP+   I +  +
Sbjct: 252 NPSDRPSFAEIHQAFE 267

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 21/205 (10%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----QGVKEFINDVNTLASLQHPNL 238
           + +G   V+ R  +  DA + K     V  L P      + + +FI +VN + SL H NL
Sbjct: 26  LGDGSFGVVRRGEW--DAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 83
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
            +L G      +    ++ E    GS LDRL   R         T  + A+  A+G+ +L
Sbjct: 84  IRLYGVVL---TPPMKMVTELAPLGSLLDRL---RKHQGHFLLGTLSRYAVQVAEGMGYL 137
Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXX-----XXE 352
             +   + ++ + +  N+ +      K+  +G    +P+ D                  E
Sbjct: 138 ESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 194
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT 377
           +L+    +  S+ W FG+ L E+ T
Sbjct: 195 SLKTRTFSHASDTWMFGVTLWEMFT 219

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 21/205 (10%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----QGVKEFINDVNTLASLQHPNL 238
           + +G   V+ R  +  DA + K     V  L P      + + +FI +VN + SL H NL
Sbjct: 26  LGDGSFGVVRRGEW--DAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 83
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
            +L G      +    ++ E    GS LDRL   R         T  + A+  A+G+ +L
Sbjct: 84  IRLYGVVL---TPPMKMVTELAPLGSLLDRL---RKHQGHFLLGTLSRYAVQVAEGMGYL 137
Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXX-----XXE 352
             +   + ++ + +  N+ +      K+  +G    +P+ D                  E
Sbjct: 138 ESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPE 194
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT 377
           +L+    +  S+ W FG+ L E+ T
Sbjct: 195 SLKTRTFSHASDTWMFGVTLWEMFT 219

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 124/325 (38%), Gaps = 67/325 (20%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----QGVKEFINDVNTLASLQHPNL 238
           + +G   V+ R  +  DA + K     V  L P      + + +FI +VN + SL H NL
Sbjct: 20  LGDGSFGVVRRGEW--DAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 77
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
            +L G      +    ++ E    GS LDRL   R         T  + A+  A+G+ +L
Sbjct: 78  IRLYGVVL---TPPMKMVTELAPLGSLLDRL---RKHQGHFLLGTLSRYAVQVAEGMGYL 131
Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXX-----XXE 352
             +   + ++ + +  N+ +      K+  +G    +P+ D                  E
Sbjct: 132 ESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 188
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDC 405
           +L+    +  S+ W FG+ L E+ T       G       H K ++   +  RP   +DC
Sbjct: 189 SLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILH-KIDKEGERLPRP---EDC 244
Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT---------------MRSI-- 448
                  PQ            + ++ ++C   +P +RPT               MR++  
Sbjct: 245 -------PQ-----------DIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQD 286
Query: 449 FEELDRQESRKSSSSTVRRASVEGF 473
           FEE D+   + +   TV     E +
Sbjct: 287 FEEPDKLHIQMNDVITVIEGRAENY 311

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 21/212 (9%)
Query: 177 FFSDRCISEGLSSVMYRASFGD-----DASTSKKFEATVTRLNPSSQGVKE--FINDVNT 229
            FSDR   +    V+ + SFG+     D  T ++    V       Q   +   + +V  
Sbjct: 29  IFSDRYKGQ---RVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQL 85
Query: 230 LASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALC 289
           L  L HPN+ KL  F    G     L+ E    G L   I  R     +D     +I   
Sbjct: 86  LKQLDHPNIMKLYEFFEDKGY--FYLVGEVYTGGELFDEIISRKRFSEVD---AARIIRQ 140
Query: 290 AAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKLSGYGCAGHIPETDIXXXXXXX 346
              G+T++H+    + ++ +    N+ ++   KD + ++  +G + H   +         
Sbjct: 141 VLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGT 197
Query: 347 XXXXXETLERGLLTPKSNVWSFGIVLLELLTG 378
                  +  G    K +VWS G++L  LL+G
Sbjct: 198 AYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 229

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 36/280 (12%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           I  G    +Y+  +  D +        +  ++P+ +  + F N+V  L   +H N+   +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVK-----ILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFM 98
Query: 243 GFHARDGSDQRMLIYERLFHG-SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
           G+  +D     + I  +   G SL + ++ +           + IA   AQG+ +LH + 
Sbjct: 99  GYMTKDN----LAIVTQWCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAK- 151
Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAG----HIPETDIXXXXXXXXXXXXETLERG 357
               ++ +  + NI + +  + K+  +G A           +            E +   
Sbjct: 152 --NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQ 209
Query: 358 LLTP---KSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV-KWSRPFLADDCRLSLIMDP 413
              P   +S+V+S+GIVL EL+TG   L   H      ++    R + + D         
Sbjct: 210 DNNPFSFQSDVYSYGIVLYELMTGE--LPYSHINNRDQIIFMVGRGYASPDL-------S 260
Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
           +L    P    R VAD    C++K   ERP    I   ++
Sbjct: 261 KLYKNCPKAMKRLVAD----CVKKVKEERPLFPQILSSIE 296

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 21/205 (10%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----QGVKEFINDVNTLASLQHPNL 238
           + +G   V+ R  +  DA + K     V  L P      + + +FI +VN + SL H NL
Sbjct: 16  LGDGSFGVVRRGEW--DAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
            +L G      +    ++ E    GS LDRL   R         T  + A+  A+G+ +L
Sbjct: 74  IRLYGVVL---TPPMKMVTELAPLGSLLDRL---RKHQGHFLLGTLSRYAVQVAEGMGYL 127
Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXX-----XXE 352
             +   + ++ + +  N+ +      K+  +G    +P+ D                  E
Sbjct: 128 ESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPE 184
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT 377
           +L+    +  S+ W FG+ L E+ T
Sbjct: 185 SLKTRTFSHASDTWMFGVTLWEMFT 209

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 21/205 (10%)
Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----QGVKEFINDVNTLASLQHPNL 238
           + +G   V+ R  +  DA + K     V  L P      + + +FI +VN + SL H NL
Sbjct: 20  LGDGSFGVVRRGEW--DAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 77
Query: 239 CKLLGFHARDGSDQRMLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
            +L G      +    ++ E    GS LDRL   R         T  + A+  A+G+ +L
Sbjct: 78  IRLYGVVL---TPPMKMVTELAPLGSLLDRL---RKHQGHFLLGTLSRYAVQVAEGMGYL 131
Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXXXXXXXXX-----XXE 352
             +   + ++ + +  N+ +      K+  +G    +P+ D                  E
Sbjct: 132 ESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 188
Query: 353 TLERGLLTPKSNVWSFGIVLLELLT 377
           +L+    +  S+ W FG+ L E+ T
Sbjct: 189 SLKTRTFSHASDTWMFGVTLWEMFT 213

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 117/296 (39%), Gaps = 47/296 (15%)
Query: 183 ISEG-LSSVMYRASFGDDASTSKKFEATVTRL---NPSSQGVKEFINDVNTLASL-QHPN 237
           + EG    V+   + G D    K+      ++   + + + + + ++++  +  + +H N
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP---------------IDWNT 282
           +  LLG   +DG    ++ Y     G+L    Y R+  PP               + +  
Sbjct: 103 IINLLGACTQDGPLYVIVGYAS--KGNLRE--YLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIXXX 342
            V      A+G+ +L  +   + ++ + +  N+ + ++   K++ +G A  I   D    
Sbjct: 159 LVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 343 XXX----XXXXXXETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                        E L   + T +S+VWSFG+++ E+ T   +     P EE  L K   
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--LFK--- 270
Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
             L +  R+            P      +  +   C    PS+RPT + + E+LDR
Sbjct: 271 -LLKEGHRMDK----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-81
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-79
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-70
3soc_A	322	Activin receptor type-2A; structural genomics cons	6e-41
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-31
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	8e-30
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-28
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-28
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-27
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-26
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-26
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-25
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-25
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-23
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	5e-22
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-22
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-21
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-21
3q4u_A	301	Activin receptor type-1; structural genomics conso	4e-21
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	5e-18
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-17
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-17
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	8e-17
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	8e-17
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-16
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-16
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-16
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	4e-16
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-16
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	7e-16
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	7e-16
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-16
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-15
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-15
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-15
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	4e-15
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	5e-15
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	7e-15
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	7e-15
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-14
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-14
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-14
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-14
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-14
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-14
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-14
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-14
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-14
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-14
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-14
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-13
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-13
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-13
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-13
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	4e-13
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-13
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	8e-13
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-12
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-12
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-12
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-12
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	7e-12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-12
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-11
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-11
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	2e-11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-11
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-11
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-11
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	8e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-10
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-10
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-10
3fme_A	290	Dual specificity mitogen-activated protein kinase;	4e-10
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-10
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	6e-10
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	8e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-09
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	6e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	6e-09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	8e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-08
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-08
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	3e-08
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-08
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-07
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-07
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-05
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	5e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	8e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	8e-04

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  254 bits (651), Expect = 1e-81
 Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 43/320 (13%)

Query: 159 TGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFG-------DDASTSKKFEATVT 211
                +F   E+    +NF  D        + M    FG       ++          V 
Sbjct: 9   DTRFHSFSFYELKNVTNNF--DERPISVGGNKMGEGGFGVVYKGYVNNT------TVAVK 60

Query: 212 RLNP-----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD 266
           +L       + +  ++F  ++  +A  QH NL +LLGF +    D   L+Y  + +GSL 
Sbjct: 61  KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDG--DDLCLVYVYMPNGSLL 118

Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
             +      PP+ W+ R KIA  AA G+ FLHE      ++ +  +ANI +D+ F+AK+S
Sbjct: 119 DRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKIS 175

Query: 327 GYGCAGHIPETDISNSS--VA-----AANLSVETLE--RGLLTPKSNVWSFGIVLLELLT 377
            +G A    +   +  +  +       A       E  RG +TPKS+++SFG+VLLE++T
Sbjct: 176 DFGLARASEKFAQTVMTSRIVGTTAYMAP------EALRGEITPKSDIYSFGVVLLEIIT 229

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
           G   +D       + L+        ++  +   +D ++       +   +  +A +CL +
Sbjct: 230 GLPAVDEHRE--PQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHE 286

Query: 438 EPSERPTMRSIFEELDRQES 457
           + ++RP ++ + + L    +
Sbjct: 287 KKNKRPDIKKVQQLLQEMTA 306

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  249 bits (638), Expect = 1e-79
 Identities = 89/323 (27%), Positives = 156/323 (48%), Gaps = 22/323 (6%)

Query: 136 SFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRAS 195
            +   T S     S    +P          PL ++  A +NF     I  G+   +Y+  
Sbjct: 4   KYSKATNSINDALSSSYLVPFES----YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGV 59

Query: 196 FGDDASTSKKFEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM 254
             D A      +  + R  P S QG++EF  ++ TL+  +HP+L  L+GF      ++ +
Sbjct: 60  LRDGA------KVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER--NEMI 111

Query: 255 LIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA 313
           LIY+ + +G+L R +YG       + W  R++I + AA+GL +LH       ++ +  + 
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSI 168

Query: 314 NIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVWSFG 369
           NI +D++F  K++ +G +    E D ++ S         +  E   +G LT KS+V+SFG
Sbjct: 169 NILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFG 228

Query: 370 IVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVAD 429
           +VL E+L  R  +    P+E  NL +W+     +  +L  I+DP L  +   ++ R   D
Sbjct: 229 VVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG-QLEQIVDPNLADKIRPESLRKFGD 287

Query: 430 IALRCLQKEPSERPTMRSIFEEL 452
            A++CL     +RP+M  +  +L
Sbjct: 288 TAVKCLALSSEDRPSMGDVLWKL 310

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  225 bits (577), Expect = 2e-70
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 19/305 (6%)

Query: 153 PLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTR 212
             P    G L+ F L E+  A  NF +   +  G    +Y+    D           V R
Sbjct: 8   EDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGT------LVAVKR 61

Query: 213 LNP-SSQGVK-EFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIY 270
           L    +QG + +F  +V  ++   H NL +L GF       +R+L+Y  + +GS+   + 
Sbjct: 62  LKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVYPYMANGSVASCLR 119

Query: 271 GRSDG-PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
            R +  PP+DW  R +IAL +A+GL +LH+    + ++ +   ANI +D++F A +  +G
Sbjct: 120 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFG 179

Query: 330 CAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR 385
            A  +   D ++ + A       ++ E L  G  + K++V+ +G++LLEL+TG++  D  
Sbjct: 180 LAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLA 238

Query: 386 HPKEER--NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
               +    L+ W +  L +  +L  ++D  L+G +  +    +  +AL C Q  P ERP
Sbjct: 239 RLANDDDVMLLDWVKGLLKEK-KLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERP 297

Query: 444 TMRSI 448
            M  +
Sbjct: 298 KMSEV 302

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  147 bits (374), Expect = 6e-41
 Identities = 48/322 (14%), Positives = 105/322 (32%), Gaps = 42/322 (13%)

Query: 163 RNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE 222
            +   + +             + G    +++A   ++          V       +   +
Sbjct: 12  VDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNE-------YVAVKIFPIQDKQSWQ 64

Query: 223 FINDVNTLASLQHPNLCKLLGF--HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDW 280
              +V +L  ++H N+ + +G             LI      GSL   +        + W
Sbjct: 65  NEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN----VVSW 120

Query: 281 NTRVKIALCAAQGLTFLHEEGPFQAMYNE-------FSTANIQIDKDFSAKLSGYGCAGH 333
           N    IA   A+GL +LHE+ P     ++         + N+ +  + +A ++ +G A  
Sbjct: 121 NELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA-- 178

Query: 334 IPETDISNSSVAAANLSV--------ETLERGLL-----TPKSNVWSFGIVLLELLTGRK 380
                 +  S    +  V        E LE  +        + ++++ G+VL EL +   
Sbjct: 179 --LKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCT 236

Query: 381 NLDSRHPKEERNLVK--WSRPFLAD--DCRLSLIMDPQLKGRFPLKAA-RTVADIALRCL 435
             D    +      +     P L D  +  +     P L+  +   A    + +    C 
Sbjct: 237 AADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECW 296

Query: 436 QKEPSERPTMRSIFEELDRQES 457
             +   R +   + E + + + 
Sbjct: 297 DHDAEARLSAGCVGERITQMQR 318

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  122 bits (308), Expect = 2e-31
 Identities = 61/341 (17%), Positives = 114/341 (33%), Gaps = 53/341 (15%)

Query: 165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI 224
               E +    N      I  G    +Y+ S  +     K F         S    + FI
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVF---------SFANRQNFI 53

Query: 225 N--DVNTLASLQHPNLCKLLGFHAR---DGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
           N  ++  +  ++H N+ + +    R   DG  + +L+ E   +GSL + +   +     D
Sbjct: 54  NEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT----SD 109

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYN------EFSTANIQIDKDFSAKLS--GYGCA 331
           W +  ++A    +GL +LH E P    Y       + ++ N+ +  D +  +S  G    
Sbjct: 110 WVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR 169

Query: 332 GHIPETDISNSSVAAANLSV--------ETLERGL-------LTPKSNVWSFGIVLLELL 376
                         AA   V        E LE  +          + ++++ G++  E+ 
Sbjct: 170 LTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIF 229

Query: 377 TGRKNLDSRHPKEERNL----VKWSRPFLADDCRLSLIMD--PQLKGRFPL--KAARTVA 428
               +L       E  +       + P   D   L       P+    +     A R++ 
Sbjct: 230 MRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLK 289

Query: 429 DIALRCLQKEPSERPTMRSIFEELDR----QESRKSSSSTV 465
           +    C  ++   R T +   E +       E  KS S T 
Sbjct: 290 ETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSVSPTA 330

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  117 bits (295), Expect = 8e-30
 Identities = 60/280 (21%), Positives = 109/280 (38%), Gaps = 43/280 (15%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           +  G   V+ +A +       K+ E        S    K FI ++  L+ + HPN+ KL 
Sbjct: 16  VGRGAFGVVCKAKWRAKDVAIKQIE--------SESERKAFIVELRQLSRVNHPNIVKLY 67

Query: 243 GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGP 302
           G       +   L+ E    GSL  +++G    P       +   L  +QG+ +LH   P
Sbjct: 68  GA----CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQP 123

Query: 303 FQAMYNEFSTANIQIDKDFS-AKLSGYGCAGHIPETDISNSSVA----AANLSVETLERG 357
              ++ +    N+ +    +  K+  +G A      DI          AA ++ E  E  
Sbjct: 124 KALIHRDLKPPNLLLVAGGTVLKICDFGTA-----CDIQTHMTNNKGSAAWMAPEVFEGS 178

Query: 358 LLTPKSNVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ 414
             + K +V+S+GI+L E++T R     +     +    +   +RP L  +          
Sbjct: 179 NYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNL------PKP 232

Query: 415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           ++             +  RC  K+PS+RP+M  I + +  
Sbjct: 233 IE------------SLMTRCWSKDPSQRPSMEEIVKIMTH 260

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  113 bits (286), Expect = 1e-28
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 33/249 (13%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
           +  ++ V EF+ +V  +  L+HPN+   +G  A        ++ E L  GSL RL++   
Sbjct: 72  DFHAERVNEFLREVAIMKRLRHPNIVLFMG--AVTQPPNLSIVTEYLSRGSLYRLLHKSG 129

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH 333
               +D   R+ +A   A+G+ +LH   P   ++    + N+ +DK ++ K+  +G +  
Sbjct: 130 AREQLDERRRLSMAYDVAKGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188

Query: 334 IPETDISNSSVA--AANLSVETLERGLLTPKSNVWSFGIVLLELLTGR---KNLDSR--- 385
              T +S+ S A     ++ E L       KS+V+SFG++L EL T +    NL+     
Sbjct: 189 KASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVV 248

Query: 386 HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM 445
                +      R  +  +       +PQ+            A I   C   EP +RP+ 
Sbjct: 249 AAVGFKCK----RLEIPRNL------NPQV------------AAIIEGCWTNEPWKRPSF 286

Query: 446 RSIFEELDR 454
            +I + L  
Sbjct: 287 ATIMDLLRP 295

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  113 bits (284), Expect = 2e-28
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 54/279 (19%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           +    +  + F+ +V  +  L+HPN+ K +G   +D   +   I E +  G+L  +I  +
Sbjct: 44  IRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK--RLNFITEYIKGGTLRGII--K 99

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSG 327
           S      W+ RV  A   A G+ +LH                 ++ N  + ++ +  ++ 
Sbjct: 100 SMDSQYPWSQRVSFAKDIASGMAYLHSMN--------IIHRDLNSHNCLVRENKNVVVAD 151

Query: 328 YGCAGHIPETDISNSSVAAANLSV----------------ETLERGLLTPKSNVWSFGIV 371
           +G A  + +       + +                     E +       K +V+SFGIV
Sbjct: 152 FGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIV 211

Query: 372 LLELLTGRK---NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVA 428
           L E++       +   R      N+  +   +   +C       P               
Sbjct: 212 LCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNC------PPSF------------F 253

Query: 429 DIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTVRR 467
            I +RC   +P +RP+   +   L+      +    +  
Sbjct: 254 PITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHLPLGP 292

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  109 bits (275), Expect = 2e-27
 Identities = 61/287 (21%), Positives = 110/287 (38%), Gaps = 44/287 (15%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             I  G    +YRA +  D    K            SQ ++    +    A L+HPN+  
Sbjct: 13  EIIGIGGFGKVYRAFWIGDEVAVKAARHD--PDEDISQTIENVRQEAKLFAMLKHPNIIA 70

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L G           L+ E    G L+R++ G+     I  +  V  A+  A+G+ +LH+E
Sbjct: 71  LRG--VCLKEPNLCLVMEFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDE 124

Query: 301 GPFQAMYNEFSTANIQIDKDFS--------AKLSGYGCAGHIPETDISNSSVAAANLSVE 352
                ++ +  ++NI I +            K++ +G A     T   +++ A A ++ E
Sbjct: 125 AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPE 184

Query: 353 TLERGLLTPKSNVWSFGIVLLELLTGR---KNLDSR---HPKEERNLVKWSRPFLADDCR 406
            +   + +  S+VWS+G++L ELLTG    + +D     +      L       +   C 
Sbjct: 185 VIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKL----ALPIPSTC- 239

Query: 407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                                A +   C   +P  RP+  +I ++L 
Sbjct: 240 -----PEPF------------AKLMEDCWNPDPHSRPSFTNILDQLT 269

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  106 bits (266), Expect = 3e-26
 Identities = 53/283 (18%), Positives = 110/283 (38%), Gaps = 44/283 (15%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLL 242
           ++E  S  +++  +  +    K  +      + S++  ++F  +   L    HPN+  +L
Sbjct: 18  LNENHSGELWKGRWQGNDIVVKVLKVR----DWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 243 GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGP 302
           G      +    LI   + +GSL  +++       +D +  VK AL  A+G+ FLH   P
Sbjct: 74  GACQSPPAPHPTLITHWMPYGSLYNVLH-EGTNFVVDQSQAVKFALDMARGMAFLHTLEP 132

Query: 303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA--AANLSVETLER---G 357
                +  ++ ++ ID+D +A++S              +       A ++ E L++    
Sbjct: 133 -LIPRHALNSRSVMIDEDMTARISMADVK-----FSFQSPGRMYAPAWVAPEALQKKPED 186

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE------ERNLVKWSRPFLADDCRLSLIM 411
                +++WSF ++L EL+T           E         L    RP +          
Sbjct: 187 TNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGL----RPTIPPGI------ 236

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
            P +            + +   C+ ++P++RP    I   L++
Sbjct: 237 SPHV------------SKLMKICMNEDPAKRPKFDMIVPILEK 267

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  106 bits (266), Expect = 6e-26
 Identities = 49/254 (19%), Positives = 103/254 (40%), Gaps = 39/254 (15%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
            P+ Q ++ F N+V  L   +H N+   +G+       Q  ++ +     SL   +   +
Sbjct: 58  APTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP---QLAIVTQWCEGSSLYHHL--HA 112

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH 333
                +    + IA   A+G+ +LH +     ++ +  + NI + +D + K+  +G A  
Sbjct: 113 SETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATE 169

Query: 334 IPETDISNSSVAAAN----LSVETLERGLLTP---KSNVWSFGIVLLELLTGRKNLDSRH 386
                 S+     +     ++ E +      P   +S+V++FGIVL EL+TG+    + +
Sbjct: 170 KSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN 229

Query: 387 PKE------ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
            ++       R  +      +  +C        ++K             +   CL+K+  
Sbjct: 230 NRDQIIEMVGRGSLSPDLSKVRSNC------PKRMK------------RLMAECLKKKRD 271

Query: 441 ERPTMRSIFEELDR 454
           ERP+   I  E++ 
Sbjct: 272 ERPSFPRILAEIEE 285

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  105 bits (263), Expect = 1e-25
 Identities = 55/289 (19%), Positives = 109/289 (37%), Gaps = 46/289 (15%)

Query: 183 ISEGLSSVMYRASFGDDAST--SKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLC 239
           I +G   ++++     D S    K      +          +EF  +V  +++L HPN+ 
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           KL G       +   ++ E +  G L   +  ++   PI W+ ++++ L  A G+ ++  
Sbjct: 87  KLYGL----MHNPPRMVMEFVPCGDLYHRLLDKAH--PIKWSVKLRLMLDIALGIEYMQN 140

Query: 300 EGPFQAMYNEFSTANIQIDK-----DFSAKLSGYGCAGHIPETDISNSSVAAANLS---- 350
           + P   ++ +  + NI +          AK++ +G +     +     S    N      
Sbjct: 141 QNP-PIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS----VSGLLGNFQWMAP 195

Query: 351 -VETLERGLLTPKSNVWSFGIVLLELLTGR---KNLDSRHPKEERNLV-KWSRPFLADDC 405
                E    T K++ +SF ++L  +LTG            K    +  +  RP + +DC
Sbjct: 196 ETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDC 255

Query: 406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                  P+L             ++   C   +P +RP    I +EL  
Sbjct: 256 ------PPRL------------RNVIELCWSGDPKKRPHFSYIVKELSE 286

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  100 bits (251), Expect = 2e-23
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 53/256 (20%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
                 +F+ +   L    HPN+ +L+G   +       ++ E +  G      + R++G
Sbjct: 152 PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK--QPIYIVMELVQGGDFLT--FLRTEG 207

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             +   T +++   AA G+ +L  +               +  N  + +    K+S +G 
Sbjct: 208 ARLRVKTLLQMVGDAAAGMEYLESKC--------CIHRDLAARNCLVTEKNVLKISDFGM 259

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           +    +  +  +S     + V     E L  G  + +S+VWSFGI+L E  +        
Sbjct: 260 SREEAD-GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPN 318

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
             N  +R              F+    R    +        P      V  +  +C   E
Sbjct: 319 LSNQQTRE-------------FVEKGGR----LPC------PELCPDAVFRLMEQCWAYE 355

Query: 439 PSERPTMRSIFEELDR 454
           P +RP+  +I++EL  
Sbjct: 356 PGQRPSFSTIYQELQS 371

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 96.0 bits (239), Expect = 5e-22
 Identities = 48/302 (15%), Positives = 98/302 (32%), Gaps = 42/302 (13%)

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFIN--DVNTLASLQHPN 237
            + I +G    ++   +  +    K F          +     +    ++     ++H N
Sbjct: 42  VKQIGKGRYGEVWMGKWRGEKVAVKVF---------FTTEEASWFRETEIYQTVLMRHEN 92

Query: 238 LCKLLG--FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT 295
           +   +           Q  LI +   +GSL   +        +D  + +K+A  +  GL 
Sbjct: 93  ILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLC 148

Query: 296 FLHEEGPFQAMYNE-----FSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLS 350
            LH E                + NI + K+ +  ++  G A  +     +N      N  
Sbjct: 149 HLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VKFISDTNEVDIPPNTR 206

Query: 351 V--------ETLERGLLTP------KSNVWSFGIVLLELLTGRKNLDSRHP-KEERNLVK 395
           V        E L+  L          ++++SFG++L E+     +       +   + + 
Sbjct: 207 VGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLV 266

Query: 396 WSRPFLADDCRLSLIMD--PQLKGRFPLKAA-RTVADIALRCLQKEPSERPTMRSIFEEL 452
            S P   D   +  I    P    R+      R +  +   C    P+ R T   + + L
Sbjct: 267 PSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTL 326

Query: 453 DR 454
            +
Sbjct: 327 AK 328

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 96.0 bits (239), Expect = 5e-22
 Identities = 56/314 (17%), Positives = 106/314 (33%), Gaps = 57/314 (18%)

Query: 182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFIN--DVNTLASLQHPNLC 239
            I +G    ++R  +  +    K F         SS+  + +    ++     L+H N+ 
Sbjct: 49  SIGKGRFGEVWRGKWRGEEVAVKIF---------SSREERSWFREAEIYQTVMLRHENIL 99

Query: 240 KLLG--FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
             +           Q  L+ +   HGSL   +        +     +K+AL  A GL  L
Sbjct: 100 GFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHL 155

Query: 298 HEEGPFQAMYNEFS-----TANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV- 351
           H E          +     + NI + K+ +  ++  G A  +     +++   A N  V 
Sbjct: 156 HMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDSATDTIDIAPNHRVG 213

Query: 352 -------ETLERGLLTP------KSNVWSFGIVLLELLTGRKNLDSRHPKEE---RNLVK 395
                  E L+  +         ++++++ G+V  E+   R ++   H   +    +LV 
Sbjct: 214 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIHEDYQLPYYDLVP 272

Query: 396 WSRPF-------LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
                            R ++   P         A R +A I   C     + R T   I
Sbjct: 273 SDPSVEEMRKVVCEQKLRPNI---PNRWQSCE--ALRVMAKIMRECWYANGAARLTALRI 327

Query: 449 ---FEELDRQESRK 459
                +L +QE  K
Sbjct: 328 KKTLSQLSQQEGIK 341

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 40/266 (15%), Positives = 87/266 (32%), Gaps = 40/266 (15%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
             +   +K F  +V      +H N+   +G  A        +I       +L  ++  R 
Sbjct: 67  RDNEDQLKAFKREVMAYRQTRHENVVLFMG--ACMSPPHLAIITSLCKGRTLYSVV--RD 122

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH 333
               +D N   +IA    +G+ +LH +G    ++ +  + N+  D      ++ +G    
Sbjct: 123 AKIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYDNG-KVVITDFGLFSI 178

Query: 334 IPETDISNSS----------------VAAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
                                     +          ++   +  S+V++ G +  EL  
Sbjct: 179 SGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA 238

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
                 ++  +     + W    +    + +L           +   + ++DI L C   
Sbjct: 239 REWPFKTQPAEA----IIWQ---MGTGMKPNLS---------QIGMGKEISDILLFCWAF 282

Query: 438 EPSERPTMRSIFEELDRQESRKSSSS 463
           E  ERPT   + + L++   R    S
Sbjct: 283 EQEERPTFTKLMDMLEKLPKRNRRLS 308

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 92.4 bits (230), Expect = 4e-21
 Identities = 59/314 (18%), Positives = 106/314 (33%), Gaps = 68/314 (21%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFIN--DVNTLASLQHPNL 238
            C+ +G    ++R S+  +    K F         SS+  K +    ++     L+H N+
Sbjct: 14  ECVGKGRYGEVWRGSWQGENVAVKIF---------SSRDEKSWFRETELYNTVMLRHENI 64

Query: 239 CKLLG--FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
              +     +R  S Q  LI      GSL   +        +D  + ++I L  A GL  
Sbjct: 65  LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAH 120

Query: 297 LHEEGPFQAMYNE-----FSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV 351
           LH E                + NI + K+    ++  G A  +  +  +N      N  V
Sbjct: 121 LHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA--VMHSQSTNQLDVGNNPRV 178

Query: 352 --------ETLERGLLTP------KSNVWSFGIVLLELLTGRK-------------NLDS 384
                   E L+  +         + ++W+FG+VL E+                  ++  
Sbjct: 179 GTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVP 238

Query: 385 RHPKEE--RNLV--KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
             P  E  R +V     RP + +       +              ++A +   C  + PS
Sbjct: 239 NDPSFEDMRKVVCVDQQRPNIPNRWFSDPTL-------------TSLAKLMKECWYQNPS 285

Query: 441 ERPTMRSIFEELDR 454
            R T   I + L +
Sbjct: 286 ARLTALRIKKTLTK 299

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 38/259 (14%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
                 + +   ++  L +L H N+ K  G    DG +   LI E L  GSL    Y   
Sbjct: 61  ESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKE--YLPK 118

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGY 328
           +   I+   ++K A+   +G+ +L            +     +  N+ ++ +   K+  +
Sbjct: 119 NKNKINLKQQLKYAVQICKGMDYLGSRQ--------YVHRDLAARNVLVESEHQVKIGDF 170

Query: 329 GCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
           G    I       +     +  V     E L +      S+VWSFG+ L ELLT    + 
Sbjct: 171 GLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDS 230

Query: 383 DSRHPKEERNLVKWSRP-------FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                  +       +         L +  RL     P      P      V  +  +C 
Sbjct: 231 SPMALFLKMIGPTHGQMTVTRLVNTLKEGKRL-----PC-----PPNCPDEVYQLMRKCW 280

Query: 436 QKEPSERPTMRSIFEELDR 454
           + +PS R + +++ E  + 
Sbjct: 281 EFQPSNRTSFQNLIEGFEA 299

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 33/255 (12%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           + + +++F  ++  L SLQH N+ K  G     G     LI E L +GSL    Y +   
Sbjct: 51  TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRD--YLQKHK 108

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             ID    ++      +G+ +L  +         +     +T NI ++ +   K+  +G 
Sbjct: 109 ERIDHIKLLQYTSQICKGMEYLGTKR--------YIHRDLATRNILVENENRVKIGDFGL 160

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR 385
              +P+              +     E+L     +  S+VWSFG+VL EL T  +   S+
Sbjct: 161 TKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE--KSK 218

Query: 386 HPKEERNLVKWSRPFLADDCR--LSLIMD----PQLKGRFPLKAARTVADIALRCLQKEP 439
            P  E   +  +           + L+ +    P+     P      +  I   C     
Sbjct: 219 SPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR-----PDGCPDEIYMIMTECWNNNV 273

Query: 440 SERPTMRSIFEELDR 454
           ++RP+ R +   +D+
Sbjct: 274 NQRPSFRDLALRVDQ 288

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 79.9 bits (198), Expect = 5e-17
 Identities = 49/258 (18%), Positives = 95/258 (36%), Gaps = 54/258 (20%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           +   S    EF  +  T+  L HP L K  G  +++      ++ E + +G L    Y R
Sbjct: 40  IKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKE--YPIYIVTEYISNGCLLN--YLR 95

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSG 327
           S G  ++ +  +++     +G+ FL            F     +  N  +D+D   K+S 
Sbjct: 96  SHGKGLEPSQLLEMCYDVCEGMAFLESHQ--------FIHRDLAARNCLVDRDLCVKVSD 147

Query: 328 YGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT----- 377
           +G   ++ +    +S        V     E       + KS+VW+FGI++ E+ +     
Sbjct: 148 FGMTRYVLDDQYVSSV--GTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMP 205

Query: 378 --GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                N +                 ++   R    +        P  A+ T+  I   C 
Sbjct: 206 YDLYTNSEVVL-------------KVSQGHR----LYR------PHLASDTIYQIMYSCW 242

Query: 436 QKEPSERPTMRSIFEELD 453
            + P +RPT + +   ++
Sbjct: 243 HELPEKRPTFQQLLSSIE 260

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 56/260 (21%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           + P S  V+ F+ + N + +LQH  L KL     ++      +I E +  GSL  L + +
Sbjct: 220 MKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPI---YIITEFMAKGSL--LDFLK 274

Query: 273 S-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
           S +G        +  +   A+G+ F+ +          +       ANI +      K++
Sbjct: 275 SDEGSKQPLPKLIDFSAQIAEGMAFIEQRN--------YIHRDLRAANILVSASLVCKIA 326

Query: 327 GYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT---- 377
            +G A  I + + +      A   +     E +  G  T KS+VWSFGI+L+E++T    
Sbjct: 327 DFGLARVIEDNEYTARE--GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI 384

Query: 378 ---GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRC 434
              G  N +                 L    R    M        P      + +I +RC
Sbjct: 385 PYPGMSNPEVIR-------------ALERGYR----MPR------PENCPEELYNIMMRC 421

Query: 435 LQKEPSERPTMRSIFEELDR 454
            +  P ERPT   I   LD 
Sbjct: 422 WKNRPEERPTFEYIQSVLDD 441

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 40/252 (15%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           L P +   + F+ +   +  L+H  L +L    + +      ++ E +  GSL    + +
Sbjct: 216 LKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---PIYIVTEYMSKGSLLD--FLK 270

Query: 273 S-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
              G  +     V +A   A G+ ++            +       ANI + ++   K++
Sbjct: 271 GETGKYLRLPQLVDMAAQIASGMAYVERMN--------YVHRDLRAANILVGENLVCKVA 322

Query: 327 GYGCAGHIPE---TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
            +G A  I +   T    +       + E    G  T KS+VWSFGI+L EL T GR   
Sbjct: 323 DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPY 382

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
                +E  + V+          R    M        P +   ++ D+  +C +KEP ER
Sbjct: 383 PGMVNREVLDQVE-------RGYR----MPC------PPECPESLHDLMCQCWRKEPEER 425

Query: 443 PTMRSIFEELDR 454
           PT   +   L+ 
Sbjct: 426 PTFEYLQAFLED 437

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 52/259 (20%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
                 V +F+ +   +    HPN+  LLG          +++   + HG L    + R+
Sbjct: 64  ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGI-CLRSEGSPLVVLPYMKHGDLRN--FIRN 120

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGY 328
           +         +   L  A+G+ +L  +         F     +  N  +D+ F+ K++ +
Sbjct: 121 ETHNPTVKDLIGFGLQVAKGMKYLASKK--------FVHRDLAARNCMLDEKFTVKVADF 172

Query: 329 GCAGHIPETDI-SNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT----- 377
           G A  + + +  S  +   A L V     E+L+    T KS+VWSFG++L EL+T     
Sbjct: 173 GLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 232

Query: 378 --GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                  D                +L    RL      Q     P      + ++ L+C 
Sbjct: 233 YPDVNTFDITV-------------YLLQGRRL-----LQ-----PEYCPDPLYEVMLKCW 269

Query: 436 QKEPSERPTMRSIFEELDR 454
             +   RP+   +   +  
Sbjct: 270 HPKAEMRPSFSELVSRISA 288

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 33/255 (12%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           + + +++F  ++  L SLQH N+ K  G     G     LI E L +GSL    Y +   
Sbjct: 82  TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRD--YLQKHK 139

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             ID    ++      +G+ +L  +         +     +T NI ++ +   K+  +G 
Sbjct: 140 ERIDHIKLLQYTSQICKGMEYLGTKR--------YIHRDLATRNILVENENRVKIGDFGL 191

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR 385
              +P+              +     E+L     +  S+VWSFG+VL EL T  +   S+
Sbjct: 192 TKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE--KSK 249

Query: 386 HPKEERNLVKWSRPFLADDCR--LSLIMD----PQLKGRFPLKAARTVADIALRCLQKEP 439
            P  E   +  +           + L+ +    P+     P      +  I   C     
Sbjct: 250 SPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR-----PDGCPDEIYMIMTECWNNNV 304

Query: 440 SERPTMRSIFEELDR 454
           ++RP+ R +   +D+
Sbjct: 305 NQRPSFRDLALRVDQ 319

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 32/254 (12%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
                ++F  ++  L +L    + K  G     G     L+ E L  G L    + +   
Sbjct: 64  GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRD--FLQRHR 121

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             +D +  +  +    +G+ +L                  +  NI ++ +   K++ +G 
Sbjct: 122 ARLDASRLLLYSSQICKGMEYLGSRR--------CVHRDLAARNILVESEAHVKIADFGL 173

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
           A  +P               +     E+L   + + +S+VWSFG+VL EL T   K+   
Sbjct: 174 AKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKS--C 231

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMD----PQLKGRFPLKAARTVADIALRCLQKEPS 440
               E   ++   R   A    L L+ +    P      P      V ++   C    P 
Sbjct: 232 SPSAEFLRMMGCERDVPALSRLLELLEEGQRLPA-----PPACPAEVHELMKLCWAPSPQ 286

Query: 441 ERPTMRSIFEELDR 454
           +RP+  ++  +LD 
Sbjct: 287 DRPSFSALGPQLDM 300

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 45/265 (16%), Positives = 94/265 (35%), Gaps = 57/265 (21%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           +   S    EFI +   + +L H  L +L G   +       +I E + +G L    Y R
Sbjct: 56  IKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK--QRPIFIITEYMANGCLLN--YLR 111

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSG 327
                      +++     + + +L  +         F     +  N  ++     K+S 
Sbjct: 112 EMRHRFQTQQLLEMCKDVCEAMEYLESKQ--------FLHRDLAARNCLVNDQGVVKVSD 163

Query: 328 YGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT----- 377
           +G + ++ + + ++S    +   V     E L     + KS++W+FG+++ E+ +     
Sbjct: 164 FGLSRYVLDDEYTSSV--GSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP 221

Query: 378 --GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                N ++                +A   R    +        P  A+  V  I   C 
Sbjct: 222 YERFTNSETAE-------------HIAQGLR----LYR------PHLASEKVYTIMYSCW 258

Query: 436 QKEPSERPTMRSIFEELD---RQES 457
            ++  ERPT + +   +     +ES
Sbjct: 259 HEKADERPTFKILLSNILDVMDEES 283

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 52/259 (20%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
               Q V+ F+ +   +  L HPN+  L+G           ++   + HG L +  + RS
Sbjct: 60  ITEMQQVEAFLREGLLMRGLNHPNVLALIGI-MLPPEGLPHVLLPYMCHGDLLQ--FIRS 116

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGY 328
                     +   L  A+G+ +L E         +F     +  N  +D+ F+ K++ +
Sbjct: 117 PQRNPTVKDLISFGLQVARGMEYLAE--------QKFVHRDLAARNCMLDESFTVKVADF 168

Query: 329 GCAGHIPETDI-SNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKN 381
           G A  I + +  S      A L V     E+L+    T KS+VWSFG++L ELLT G   
Sbjct: 169 GLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPP 228

Query: 382 LDSRHPKEERNLVKW----SRPFLADDCRLSL--IMDPQLKGRFPLKAARTVADIALRCL 435
                P +  + +       +P   + C  SL  +M                     +C 
Sbjct: 229 YRHIDPFDLTHFLAQGRRLPQP---EYCPDSLYQVM--------------------QQCW 265

Query: 436 QKEPSERPTMRSIFEELDR 454
           + +P+ RPT R +  E+++
Sbjct: 266 EADPAVRPTFRVLVGEVEQ 284

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 54/259 (20%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           +   +   ++FI +   +  L HP L +L G           L+ E + HG L    Y R
Sbjct: 40  IREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE--QAPICLVTEFMEHGCLSD--YLR 95

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSG 327
           +        T + + L   +G+ +L E                +  N  + ++   K+S 
Sbjct: 96  TQRGLFAAETLLGMCLDVCEGMAYLEEAC--------VIHRDLAARNCLVGENQVIKVSD 147

Query: 328 YGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT----- 377
           +G    + +   ++S+       V     E       + KS+VWSFG+++ E+ +     
Sbjct: 148 FGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP 205

Query: 378 --GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
              R N +                 ++   RL      +     P  A+  V  I   C 
Sbjct: 206 YENRSNSEVVE-------------DISTGFRL-----YK-----PRLASTHVYQIMNHCW 242

Query: 436 QKEPSERPTMRSIFEELDR 454
           ++ P +RP    +  +L  
Sbjct: 243 RERPEDRPAFSRLLRQLAE 261

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 43/254 (16%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + +G+L    Y R
Sbjct: 253 LKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--PFYIITEFMTYGNLLD--YLR 308

Query: 273 S-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
             +   +     + +A   +  + +L ++         F     +  N  + ++   K++
Sbjct: 309 ECNRQEVSAVVLLYMATQISSAMEYLEKKN--------FIHRNLAARNCLVGENHLVKVA 360

Query: 327 GYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRK 380
            +G +  +   D   +  A A   +     E+L     + KS+VW+FG++L E+ T G  
Sbjct: 361 DFGLSRLM-TGDTYTAH-AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMS 418

Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
                   +   L++        D R    M+       P      V ++   C Q  PS
Sbjct: 419 PYPGIDLSQVYELLE-------KDYR----MER------PEGCPEKVYELMRACWQWNPS 461

Query: 441 ERPTMRSIFEELDR 454
           +RP+   I +  + 
Sbjct: 462 DRPSFAEIHQAFET 475

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 76.9 bits (190), Expect = 7e-16
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 59/258 (22%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S    ++F+ +  T+    HP++ KL+G    +      +I E    G L    + +   
Sbjct: 56  SDSVREKFLQEALTMRQFDHPHIVKLIGVITEN---PVWIIMELCTLGELRS--FLQVRK 110

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             +D  + +  A   +  L +L  +         F     +  N+ +  +   KL  +G 
Sbjct: 111 YSLDLASLILYAYQLSTALAYLESKR--------FVHRDIAARNVLVSSNDCVKLGDFGL 162

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           + ++ ++    +S     L +     E++     T  S+VW FG+ + E+L        G
Sbjct: 163 SRYMEDSTYYKAS--KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG 220

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDPQLKGRFPLKAARTVADIALRCLQ 436
            KN D     E    +    P    +C  +L  +M                     +C  
Sbjct: 221 VKNNDVIGRIENGERL--PMP---PNCPPTLYSLM--------------------TKCWA 255

Query: 437 KEPSERPTMRSIFEELDR 454
            +PS RP    +  +L  
Sbjct: 256 YDPSRRPRFTELKAQLST 273

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 55/246 (22%), Positives = 96/246 (39%), Gaps = 46/246 (18%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPID 279
           + F+ + + +  L+H NL +LLG    +      ++ E +  GSL  + Y RS     + 
Sbjct: 231 QAFLAEASVMTQLRHSNLVQLLGVIVEEK-GGLYIVTEYMAKGSL--VDYLRSRGRSVLG 287

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGCAGHI 334
            +  +K +L   + + +L            F     +  N+ + +D  AK+S +G     
Sbjct: 288 GDCLLKFSLDVCEAMEYLEGNN--------FVHRDLAARNVLVSEDNVAKVSDFGLTKEA 339

Query: 335 PETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPK 388
                 +S+     L V     E L     + KS+VWSFGI+L E+ + GR        K
Sbjct: 340 ------SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 393

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           +    V+          +    MD       P      V D+   C   + + RPT   +
Sbjct: 394 DVVPRVE-------KGYK----MDA------PDGCPPAVYDVMKNCWHLDAATRPTFLQL 436

Query: 449 FEELDR 454
            E+L+ 
Sbjct: 437 REQLEH 442

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 47/258 (18%), Positives = 96/258 (37%), Gaps = 52/258 (20%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
             + +   +F+ +   +    H N+ +L G  ++      M+I E + +G+LD+  + R 
Sbjct: 84  GYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK--YKPMMIITEYMENGALDK--FLRE 139

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGY 328
                     V +    A G+ +L            +     +  NI ++ +   K+S +
Sbjct: 140 KDGEFSVLQLVGMLRGIAAGMKYLANMN--------YVHRDLAARNILVNSNLVCKVSDF 191

Query: 329 GCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT------ 377
           G +  + +   +  + +   + +     E +     T  S+VWSFGIV+ E++T      
Sbjct: 192 GLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY 251

Query: 378 -GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQ 436
               N +                 + D  RL     P      P+     +  + ++C Q
Sbjct: 252 WELSNHEVMK-------------AINDGFRL-----PT-----PMDCPSAIYQLMMQCWQ 288

Query: 437 KEPSERPTMRSIFEELDR 454
           +E + RP    I   LD+
Sbjct: 289 QERARRPKFADIVSILDK 306

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 55/259 (21%), Positives = 91/259 (35%), Gaps = 40/259 (15%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
           +   Q    +  +++ L +L H ++ K  G     G+    L+ E +  GSL   +   S
Sbjct: 71  DAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS 130

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGY 328
               I     +  A    +G+ +LH +         +     +  N+ +D D   K+  +
Sbjct: 131 ----IGLAQLLLFAQQICEGMAYLHAQH--------YIHRDLAARNVLLDNDRLVKIGDF 178

Query: 329 GCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNL 382
           G A  +PE           +  V     E L+       S+VWSFG+ L ELLT    + 
Sbjct: 179 GLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQ 238

Query: 383 DSRHPKEERNLVKWSRP-------FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                  E   +   +         L    RL     P+     P K    V  +   C 
Sbjct: 239 SPPTKFLELIGIAQGQMTVLRLTELLERGERL-----PR-----PDKCPAEVYHLMKNCW 288

Query: 436 QKEPSERPTMRSIFEELDR 454
           + E S RPT  ++   L  
Sbjct: 289 ETEASFRPTFENLIPILKT 307

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 56/260 (21%), Positives = 96/260 (36%), Gaps = 56/260 (21%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           L   S     F+ + N +  LQH  L +L     ++      +I E + +GSL    + +
Sbjct: 45  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEP---IYIITEYMENGSLVD--FLK 99

Query: 273 S-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
           +  G  +  N  + +A   A+G+ F+ E          +       ANI +    S K++
Sbjct: 100 TPSGIKLTINKLLDMAAQIAEGMAFIEERN--------YIHRDLRAANILVSDTLSCKIA 151

Query: 327 GYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT---- 377
            +G A  I + + +    A     +     E +  G  T KS+VWSFGI+L E++T    
Sbjct: 152 DFGLARLIEDNEYTAREGA--KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRI 209

Query: 378 ---GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRC 434
              G  N +                 L    R    M        P      +  +   C
Sbjct: 210 PYPGMTNPEVIQ-------------NLERGYR----MVR------PDNCPEELYQLMRLC 246

Query: 435 LQKEPSERPTMRSIFEELDR 454
            ++ P +RPT   +   L+ 
Sbjct: 247 WKERPEDRPTFDYLRSVLED 266

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 38/251 (15%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           L P +   + F+ +   +  L+H  L +L    + +      ++ E +  GSL    + +
Sbjct: 299 LKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---PIYIVTEYMSKGSLLD--FLK 353

Query: 273 S-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
              G  +     V +A   A G+ ++            +       ANI + ++   K++
Sbjct: 354 GETGKYLRLPQLVDMAAQIASGMAYVERMN--------YVHRDLRAANILVGENLVCKVA 405

Query: 327 GYGCAGHIPE---TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD 383
            +G A  I +   T    +       + E    G  T KS+VWSFGI+L EL T  +   
Sbjct: 406 DFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPY 465

Query: 384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
                 E          +    R    M        P +   ++ D+  +C +KEP ERP
Sbjct: 466 PGMVNRE------VLDQVERGYR----MPC------PPECPESLHDLMCQCWRKEPEERP 509

Query: 444 TMRSIFEELDR 454
           T   +   L+ 
Sbjct: 510 TFEYLQAFLED 520

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 52/259 (20%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
                 V +F+ +   +    HPN+  LLG          +++   + HG L    + R+
Sbjct: 128 ITDIGEVSQFLTEGIIMKDFSHPNVLSLLGI-CLRSEGSPLVVLPYMKHGDLRN--FIRN 184

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGY 328
           +         +   L  A+G+ FL           +F     +  N  +D+ F+ K++ +
Sbjct: 185 ETHNPTVKDLIGFGLQVAKGMKFLAS--------KKFVHRDLAARNCMLDEKFTVKVADF 236

Query: 329 GCAGHIPETDISNS-SVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT----- 377
           G A  + + +  +  +   A L V     E+L+    T KS+VWSFG++L EL+T     
Sbjct: 237 GLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 296

Query: 378 --GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                  D                +L    RL      Q     P      + ++ L+C 
Sbjct: 297 YPDVNTFDITV-------------YLLQGRRL-----LQ-----PEYCPDPLYEVMLKCW 333

Query: 436 QKEPSERPTMRSIFEELDR 454
             +   RP+   +   +  
Sbjct: 334 HPKAEMRPSFSELVSRISA 352

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 52/273 (19%), Positives = 99/273 (36%), Gaps = 42/273 (15%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
                 Q  +   + +  + SL H ++ +LLG           L+ + L  GSL    + 
Sbjct: 51  EDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP---GSSLQLVTQYLPLGSLLD--HV 105

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
           R     +     +   +  A+G+ +L E G              +  N+ +      +++
Sbjct: 106 RQHRGALGPQLLLNWGVQIAKGMYYLEEHG--------MVHRNLAARNVLLKSPSQVQVA 157

Query: 327 GYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRK 380
            +G A  +P  D      + A   +     E++  G  T +S+VWS+G+ + EL+T G +
Sbjct: 158 DFGVADLLPPDDKQLLY-SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAE 216

Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
                   E  +L++          RL      Q     P      V  + ++C   + +
Sbjct: 217 PYAGLRLAEVPDLLE-------KGERL-----AQ-----PQICTIDVYMVMVKCWMIDEN 259

Query: 441 ERPTMRSIFEELDRQESRKSSSSTVRRASVEGF 473
            RPT + +  E  R          ++R S  G 
Sbjct: 260 IRPTFKELANEFTRMARDPPRYLVIKRESGPGI 292

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 42/250 (16%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG           LI + +  G L    Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICLT---STVQLITQLMPFGCLLD--YVREHK 111

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             I     +   +  A+G+ +L +                +  N+ +      K++ +G 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDRR--------LVHRDLAARNVLVKTPQHVKITDFGL 163

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
           A  +   +    +     + +     E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 164 AKLLGAEEKEYHA-EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
               E  ++++          RL     PQ     P      V  I  +C   +   RP 
Sbjct: 223 IPASEISSILE-------KGERL-----PQ-----PPICTIDVYMIMRKCWMIDADSRPK 265

Query: 445 MRSIFEELDR 454
            R +  E  +
Sbjct: 266 FRELIIEFSK 275

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 74.6 bits (184), Expect = 7e-15
 Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 52/256 (20%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           + +  ++F+++ + +    HPN+ +L G   R      M++ E + +GSLD   + R+  
Sbjct: 90  TERQRRDFLSEASIMGQFDHPNIIRLEGVVTR--GRLAMIVTEYMENGSLDT--FLRTHD 145

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
                   V +      G+ +L + G        +     +  N+ +D +   K+S +G 
Sbjct: 146 GQFTIMQLVGMLRGVGAGMRYLSDLG--------YVHRDLAARNVLVDSNLVCKVSDFGL 197

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           +  + +   +  +     + +     E +     +  S+VWSFG+V+ E+L         
Sbjct: 198 SRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN 257

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
             N D                 + +  RL     P      P+     +  + L C  K+
Sbjct: 258 MTNRDVIS-------------SVEEGYRL-----PA-----PMGCPHALHQLMLDCWHKD 294

Query: 439 PSERPTMRSIFEELDR 454
            ++RP    I   LD 
Sbjct: 295 RAQRPRFSQIVSVLDA 310

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 48/280 (17%), Positives = 87/280 (31%), Gaps = 72/280 (25%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
                + F    + ++ L H +L    G       D+ +L+ E +  GSLD   Y + + 
Sbjct: 52  HRNYSESFFEAASMMSKLSHKHLVLNYGVCVC--GDENILVQEFVKFGSLDT--YLKKNK 107

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFS-------- 322
             I+   ++++A   A  + FL E                   NI + ++          
Sbjct: 108 NCINILWKLEVAKQLAAAMHFLEENT--------LIHGNVCAKNILLIREEDRKTGNPPF 159

Query: 323 AKLSGYGCAGHIPETDISNSSV------AAANLSVETLERGLLTPKSNVWSFGIVLLELL 376
            KLS  G +  +   DI    +         N          L   ++ WSFG  L E+ 
Sbjct: 160 IKLSDPGISITVLPKDILQERIPWVPPECIEN-------PKNLNLATDKWSFGTTLWEIC 212

Query: 377 T-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVAD 429
           +          +       E+R+ +    P       L+ ++                  
Sbjct: 213 SGGDKPLSALDSQRKLQFYEDRHQL--PAP---KAAELANLI------------------ 249

Query: 430 IALRCLQKEPSERPTMRSIFEELDR--QESRKSSSSTVRR 467
               C+  EP  RP+ R+I  +L+           S    
Sbjct: 250 --NNCMDYEPDHRPSFRAIIRDLNSLFTPDLVPRGSHHHH 287

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 55/269 (20%), Positives = 100/269 (37%), Gaps = 55/269 (20%)

Query: 209 TVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR---MLIYERLFHGSL 265
           T+   N S + ++EF+++   +    HPN+ +LLG      S      M+I   + +G L
Sbjct: 69  TMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDL 128

Query: 266 D---RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQI 317
                     +    I   T +K  +  A G+ +L            F     +  N  +
Sbjct: 129 HTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN--------RNFLHRDLAARNCML 180

Query: 318 DKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVL 372
             D +  ++ +G +  I   D        A + V     E+L   + T KS+VW+FG+ +
Sbjct: 181 RDDMTVCVADFGLSKKIYSGDYYRQG-RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTM 239

Query: 373 LELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR 425
            E+ T       G +N +                +L    RL      Q     P     
Sbjct: 240 WEIATRGMTPYPGVQNHEMYD-------------YLLHGHRL-----KQ-----PEDCLD 276

Query: 426 TVADIALRCLQKEPSERPTMRSIFEELDR 454
            + +I   C + +P +RPT   +  +L++
Sbjct: 277 ELYEIMYSCWRTDPLDRPTFSVLRLQLEK 305

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 56/270 (20%)

Query: 209 TVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR----MLIYERLFHGS 264
            +     +S  ++EF+ +   +    HP++ KL+G   R  +  R    M+I   + HG 
Sbjct: 58  MLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGD 117

Query: 265 LD---RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQ 316
           L           +   +   T V+  +  A G+ +L            F     +  N  
Sbjct: 118 LHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS--------RNFIHRDLAARNCM 169

Query: 317 IDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIV 371
           + +D +  ++ +G +  I   D       A+ L V     E+L   L T  S+VW+FG+ 
Sbjct: 170 LAEDMTVCVADFGLSRKIYSGDYYRQG-CASKLPVKWLALESLADNLYTVHSDVWAFGVT 228

Query: 372 LLELLT-GRKNLDSRHPKEERNLVKW----SRPFLADDCRLSL--IMDPQLKGRFPLKAA 424
           + E++T G+         E  N +       +P    +C   +  +M             
Sbjct: 229 MWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQP---PECMEEVYDLM------------- 272

Query: 425 RTVADIALRCLQKEPSERPTMRSIFEELDR 454
                   +C   +P +RP+   +  EL+ 
Sbjct: 273 -------YQCWSADPKQRPSFTCLRMELEN 295

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 51/256 (19%), Positives = 97/256 (37%), Gaps = 52/256 (20%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           + +  ++F+ + + +    HPN+ +L G   +  S   M++ E + +GSLD   + R   
Sbjct: 86  TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK--SKPVMIVTEYMENGSLDS--FLRKHD 141

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
                   V +    A G+ +L + G        +     +  NI I+ +   K+S +G 
Sbjct: 142 AQFTVIQLVGMLRGIASGMKYLSDMG--------YVHRDLAARNILINSNLVCKVSDFGL 193

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
              + +   +  +     + +     E +     T  S+VWS+GIVL E+++        
Sbjct: 194 GRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWE 253

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
             N D                 + +  RL     P      P+     +  + L C QK+
Sbjct: 254 MSNQDVIK-------------AVDEGYRL-----PP-----PMDCPAALYQLMLDCWQKD 290

Query: 439 PSERPTMRSIFEELDR 454
            + RP    I   LD+
Sbjct: 291 RNNRPKFEQIVSILDK 306

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 43/267 (16%)

Query: 213 LNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           L   +  V+EF+ +   +  ++HPNL +LLG   R+      +I E + +G+L    Y R
Sbjct: 46  LKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP--FYIITEFMTYGNLLD--YLR 101

Query: 273 SDGP-PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
                 +     + +A   +  + +L ++         F     +  N  + ++   K++
Sbjct: 102 ECNRQEVSAVVLLYMATQISSAMEYLEKKN--------FIHRDLAARNCLVGENHLVKVA 153

Query: 327 GYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRK 380
            +G +  +   D   +  A A   +     E+L     + KS+VW+FG++L E+ T G  
Sbjct: 154 DFGLSRLM-TGDTYTAH-AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

Query: 381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPS 440
                   +   L++        D R+      +     P      V ++   C Q  PS
Sbjct: 212 PYPGIDLSQVYELLE-------KDYRM-----ER-----PEGCPEKVYELMRACWQWNPS 254

Query: 441 ERPTMRSIFEELDRQESRKSSSSTVRR 467
           +RP+   I +  +      S S  V +
Sbjct: 255 DRPSFAEIHQAFETMFQESSISDEVEK 281

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 47/250 (18%), Positives = 94/250 (37%), Gaps = 40/250 (16%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
             + + +FI +VN + SL H NL +L G      +    ++ E    GSL      R   
Sbjct: 61  QPEAMDDFIREVNAMHSLDHRNLIRLYGVVL---TPPMKMVTELAPLGSLLD--RLRKHQ 115

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
                 T  + A+  A+G+ +L  +         F     +  N+ +      K+  +G 
Sbjct: 116 GHFLLGTLSRYAVQVAEGMGYLESKR--------FIHRDLAARNLLLATRDLVKIGDFGL 167

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
              +P+ D          +       E+L+    +  S+ W FG+ L E+ T G++    
Sbjct: 168 MRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG 227

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
            +  +  + +           RL     P+     P    + + ++ ++C   +P +RPT
Sbjct: 228 LNGSQILHKIDKEGE------RL-----PR-----PEDCPQDIYNVMVQCWAHKPEDRPT 271

Query: 445 MRSIFEELDR 454
             ++ + L  
Sbjct: 272 FVALRDFLLE 281

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 61/273 (22%), Positives = 101/273 (36%), Gaps = 74/273 (27%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
             S +   EF+N+ + +      ++ +LLG  ++      ++I E +  G L    Y RS
Sbjct: 66  AASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP--TLVIMELMTRGDL--KSYLRS 121

Query: 274 DGPPIDWNTR---------VKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDK 319
             P +  N           +++A   A G+ +L+         N+F     +  N  + +
Sbjct: 122 LRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA--------NKFVHRDLAARNCMVAE 173

Query: 320 DFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLE 374
           DF+ K+  +G    I ETD          L V     E+L+ G+ T  S+VWSFG+VL E
Sbjct: 174 DFTVKIGDFGMTRDIYETDYYRKGGKGL-LPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 232

Query: 375 LLT-------GRKNLDSRHPKEERNLVK----WSRPFLADDCRLSL--IMDPQLKGRFPL 421
           + T       G  N      ++    V       +P   D+C   L  +M          
Sbjct: 233 IATLAEQPYQGLSN------EQVLRFVMEGGLLDKP---DNCPDMLFELM---------- 273

Query: 422 KAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       C Q  P  RP+   I   +  
Sbjct: 274 ----------RMCWQYNPKMRPSFLEIISSIKE 296

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 47/256 (18%), Positives = 89/256 (34%), Gaps = 55/256 (21%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           +    ++F+++   + +L HP++ KL+G    +      +I E   +G L    Y   + 
Sbjct: 53  TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE---PTWIIMELYPYGELGH--YLERNK 107

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             +   T V  +L   + + +L                  +  NI +      KL  +G 
Sbjct: 108 NSLKVLTLVLYSLQICKAMAYLESIN--------CVHRDIAVRNILVASPECVKLGDFGL 159

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           + +I + D   +S     L +     E++     T  S+VW F + + E+L+        
Sbjct: 160 SRYIEDEDYYKAS--VTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFW 217

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
            +N D                 L    RL     P+     P      +  +  RC   +
Sbjct: 218 LENKDVIG-------------VLEKGDRL-----PK-----PDLCPPVLYTLMTRCWDYD 254

Query: 439 PSERPTMRSIFEELDR 454
           PS+RP    +   L  
Sbjct: 255 PSDRPRFTELVCSLSD 270

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 37/256 (14%), Positives = 88/256 (34%), Gaps = 53/256 (20%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
                +E + +   +  L +P + +L+G      ++  ML+ E    G L +  +     
Sbjct: 50  EKADTEEMMREAQIMHQLDNPYIVRLIGVCQ---AEALMLVMEMAGGGPLHK--FLVGKR 104

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             I  +   ++    + G+ +L E+         F     +  N+ +     AK+S +G 
Sbjct: 105 EEIPVSNVAELLHQVSMGMKYLEEKN--------FVHRDLAARNVLLVNRHYAKISDFGL 156

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           +  +   D   ++ +A    +     E +     + +S+VWS+G+ + E L+        
Sbjct: 157 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK 216

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
            K  +                F+    R+            P +    +  +   C   +
Sbjct: 217 MKGPEVMA-------------FIEQGKRM-----EC-----PPECPPELYALMSDCWIYK 253

Query: 439 PSERPTMRSIFEELDR 454
             +RP   ++ + +  
Sbjct: 254 WEDRPDFLTVEQRMRA 269

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 55/260 (21%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYG 271
           +   S    ++F+ +  T+    HP++ KL+G    +      +I E    G L    + 
Sbjct: 427 KNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN---PVWIIMELCTLGELRS--FL 481

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLS 326
           +     +D  + +  A   +  L +L  +         F     +  N+ +  +   KL 
Sbjct: 482 QVRKFSLDLASLILYAYQLSTALAYLESKR--------FVHRDIAARNVLVSSNDCVKLG 533

Query: 327 GYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT---- 377
            +G + ++ ++    +S     L +     E++     T  S+VW FG+ + E+L     
Sbjct: 534 DFGLSRYMEDSTYYKAS--KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVK 591

Query: 378 ---GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRC 434
              G KN D                 + +  RL     P      P     T+  +  +C
Sbjct: 592 PFQGVKNNDVIG-------------RIENGERL-----PM-----PPNCPPTLYSLMTKC 628

Query: 435 LQKEPSERPTMRSIFEELDR 454
              +PS RP    +  +L  
Sbjct: 629 WAYDPSRRPRFTELKAQLST 648

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 51/262 (19%), Positives = 91/262 (34%), Gaps = 44/262 (16%)

Query: 215 PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSLDRLI-YGR 272
             ++   + I +++ L  L HPN+ K       D     + I  E    G L R+I + +
Sbjct: 71  MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNE---LNIVLELADAGDLSRMIKHFK 127

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG 332
                I   T  K  +     L  +H       M+ +   AN+ I      KL   G   
Sbjct: 128 KQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGR 184

Query: 333 HIPETDISNSSVAAAN--------LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDS 384
                   +S   AA+        +S E +       KS++WS G +L E+   +     
Sbjct: 185 FF------SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ----- 233

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF-PLKAAR---TVADIALRCLQKEPS 440
                         PF  D   L  +     +  + PL +      +  +   C+  +P 
Sbjct: 234 -------------SPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPE 280

Query: 441 ERPTMRSIFEELDRQESRKSSS 462
           +RP +  +++   R  +  +SS
Sbjct: 281 KRPDVTYVYDVAKRMHACTASS 302

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 71.1 bits (175), Expect = 6e-14
 Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 46/246 (18%)

Query: 221 KEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPID 279
           + F+ + + +  L+H NL +LLG    +      ++ E +  GSL    Y RS     + 
Sbjct: 59  QAFLAEASVMTQLRHSNLVQLLGVIVEE-KGGLYIVTEYMAKGSLVD--YLRSRGRSVLG 115

Query: 280 WNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGCAGHI 334
            +  +K +L   + + +L            F     +  N+ + +D  AK+S +G     
Sbjct: 116 GDCLLKFSLDVCEAMEYLEGNN--------FVHRDLAARNVLVSEDNVAKVSDFGLTKEA 167

Query: 335 PETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPK 388
             T           L V     E L     + KS+VWSFGI+L E+ + GR        K
Sbjct: 168 SSTQ------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 221

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
           +    V+          +    MD       P      V ++   C   + + RP+   +
Sbjct: 222 DVVPRVE-------KGYK----MDA------PDGCPPAVYEVMKNCWHLDAAMRPSFLQL 264

Query: 449 FEELDR 454
            E+L+ 
Sbjct: 265 REQLEH 270

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 51/246 (20%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML--IYERLFHGSLDRLI--YG 271
           +    + F  +   L  LQHPN+ +           ++ +  + E +  G+L   +  + 
Sbjct: 65  TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK 124

Query: 272 RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGC 330
                 +             +GL FLH   P   ++ +    NI I     S K+   G 
Sbjct: 125 -----VMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGL 178

Query: 331 AGHIPETDISNSSVAAANLSV---------ETLERGLLTPKSNVWSFGIVLLELLTGRKN 381
           A     +            +V         E  E        +V++FG+ +LE+ T    
Sbjct: 179 ATLKRASFAK---------AVIGTPEFMAPEMYEEKY-DESVDVYAFGMCMLEMATS--- 225

Query: 382 LDSRHP-KEERNLVKWSRPFLADDCRLSL--IMDPQLKGRFPLKAARTVADIALRCLQKE 438
               +P  E +N  +  R   +     S   +  P++K            +I   C+++ 
Sbjct: 226 ---EYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVK------------EIIEGCIRQN 270

Query: 439 PSERPT 444
             ER +
Sbjct: 271 KDERYS 276

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 216 SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD 274
             +     + +V +   + QHP   +L       G    + +   L   SL +     + 
Sbjct: 96  GPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG---ILYLQTELCGPSLQQHC--EAW 150

Query: 275 GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI 334
           G  +               L  LH +G    ++ +   ANI +      KL  +G    +
Sbjct: 151 GASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207

Query: 335 PETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL 393
                          ++ E L+       ++V+S G+ +LE+                  
Sbjct: 208 GTAGAGEVQEGDPRYMAPELLQGSY-GTAADVFSLGLTILEVACN--------------- 251

Query: 394 VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                P   +      +    L   F    +  +  + +  L+ +P  R T  ++  
Sbjct: 252 --MELPHGGEG--WQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 50/250 (20%), Positives = 96/250 (38%), Gaps = 42/250 (16%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S +  KE +++   +AS+ +P++C+LLG           LI + +  G L    Y R   
Sbjct: 57  SPKANKEILDEAYVMASVDNPHVCRLLGICLT---STVQLITQLMPFGCLLD--YVREHK 111

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             I     +   +  A+G+ +L +                +  N+ +      K++ +G 
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLEDRR--------LVHRDLAARNVLVKTPQHVKITDFGL 163

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDS 384
           A  +   +          + +     E++   + T +S+VWS+G+ + EL+T G K  D 
Sbjct: 164 AKLLGAEE-KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
               E  ++++          RL     PQ     P      V  I ++C   +   RP 
Sbjct: 223 IPASEISSILE-------KGERL-----PQ-----PPICTIDVYMIMVKCWMIDADSRPK 265

Query: 445 MRSIFEELDR 454
            R +  E  +
Sbjct: 266 FRELIIEFSK 275

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 53/256 (20%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
                +E + +   +  L +P + +L+G    +     ML+ E    G L +  +     
Sbjct: 376 EKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE---ALMLVMEMAGGGPLHK--FLVGKR 430

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             I  +   ++    + G+ +L E+         F     +  N+ +     AK+S +G 
Sbjct: 431 EEIPVSNVAELLHQVSMGMKYLEEKN--------FVHRNLAARNVLLVNRHYAKISDFGL 482

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           +  +   D   ++ +A    +     E +     + +S+VWS+G+ + E L+        
Sbjct: 483 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK 542

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
            K  +                F+    R+            P +    +  +   C   +
Sbjct: 543 MKGPEVMA-------------FIEQGKRM-----EC-----PPECPPELYALMSDCWIYK 579

Query: 439 PSERPTMRSIFEELDR 454
             +RP   ++ + +  
Sbjct: 580 WEDRPDFLTVEQRMRA 595

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 53/272 (19%), Positives = 94/272 (34%), Gaps = 71/272 (26%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           S    ++F  +   L  LQH ++ +  G          ++++E + HG L+R  + RS G
Sbjct: 83  SESARQDFQREAELLTMLQHQHIVRFFGVCTEG--RPLLMVFEYMRHGDLNR--FLRSHG 138

Query: 276 PPIDWNTR--------------VKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQ 316
           P                     + +A   A G+ +L            F     +T N  
Sbjct: 139 PDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG--------LHFVHRDLATRNCL 190

Query: 317 IDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIV 371
           + +    K+  +G +  I  TD          L +     E++     T +S+VWSFG+V
Sbjct: 191 VGQGLVVKIGDFGMSRDIYSTDYYRVG-GRTMLPIRWMPPESILYRKFTTESDVWSFGVV 249

Query: 372 LLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDPQLKGRFPLK 422
           L E+ T          N ++     +   +   RP     C   +  IM           
Sbjct: 250 LWEIFTYGKQPWYQLSNTEAIDCITQGREL--ERP---RACPPEVYAIM----------- 293

Query: 423 AARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                      C Q+EP +R +++ +   L  
Sbjct: 294 ---------RGCWQREPQQRHSIKDVHARLQA 316

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 51/267 (19%), Positives = 87/267 (32%), Gaps = 62/267 (23%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR-LIYGR 272
             S Q   +F+ +   ++   H N+ + +G   +     R ++ E +  G L   L   R
Sbjct: 71  VCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP--RFILMELMAGGDLKSFLRETR 128

Query: 273 ---SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANI---QIDKDF 321
              S    +     + +A   A G  +L E        N F     +  N          
Sbjct: 129 PRPSQPSSLAMLDLLHVARDIACGCQYLEE--------NHFIHRDIAARNCLLTCPGPGR 180

Query: 322 SAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELL 376
            AK+  +G A  I            A L V     E    G+ T K++ WSFG++L E+ 
Sbjct: 181 VAKIGDFGMARDIYRASYYRKG-GCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 239

Query: 377 T-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDPQLKGRFPLKAARTV 427
           +        + N +          +    P    +C   +  IM                
Sbjct: 240 SLGYMPYPSKSNQEVLEFVTSGGRMD--PP---KNCPGPVYRIM---------------- 278

Query: 428 ADIALRCLQKEPSERPTMRSIFEELDR 454
                +C Q +P +RP    I E ++ 
Sbjct: 279 ----TQCWQHQPEDRPNFAIILERIEY 301

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 51/311 (16%), Positives = 95/311 (30%), Gaps = 83/311 (26%)

Query: 181 RCISEGLSSVMYRASFGD-----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH 235
           +C+  G         FG      +      +     RL       ++ + +V  LA L+H
Sbjct: 11  QCLGRG--------GFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEH 62

Query: 236 PNLCKLLGFHARDGSDQRMLIYERLFH----------GSLDRLIYGRSDGPPIDWNTRVK 285
           P + +         + +++       +           +L   + GR      + +  + 
Sbjct: 63  PGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLH 122

Query: 286 IALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI-PET 337
           I L  A+ + FLH +G       P          +NI    D   K+  +G    +  + 
Sbjct: 123 IFLQIAEAVEFLHSKGLMHRDLKP----------SNIFFTMDDVVKVGDFGLVTAMDQDE 172

Query: 338 DISNSSVAAANLSVETLERGLLTP---------------KSNVWSFGIVLLELLTGRKNL 382
           +           +  T + G  T                K +++S G++L ELL      
Sbjct: 173 EEQTVLTPMPAYARHTGQVG--TKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY----- 225

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFP---LKAARTVADIALRCLQKEP 439
                           PF     R+  + D +   +FP    +       +    L   P
Sbjct: 226 ----------------PFSTQMERVRTLTDVR-NLKFPPLFTQKYPCEYVMVQDMLSPSP 268

Query: 440 SERPTMRSIFE 450
            ERP   +I E
Sbjct: 269 MERPEAINIIE 279

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 68.0 bits (167), Expect = 8e-13
 Identities = 53/273 (19%), Positives = 98/273 (35%), Gaps = 72/273 (26%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           +    K+F  +   L +LQH ++ K  G       D  ++++E + HG L++  + R+ G
Sbjct: 57  TLAARKDFQREAELLTNLQHEHIVKFYGVCGDG--DPLIMVFEYMKHGDLNK--FLRAHG 112

Query: 276 PPIDWNTR---------------VKIALCAAQGLTFLHEEGPFQAMYNEF-----STANI 315
           P                      + IA   A G+ +L            F     +T N 
Sbjct: 113 PDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLAS--------QHFVHRDLATRNC 164

Query: 316 QIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGI 370
            +  +   K+  +G +  +  TD          L +     E++     T +S+VWSFG+
Sbjct: 165 LVGANLLVKIGDFGMSRDVYSTDYYRVGGHTM-LPIRWMPPESIMYRKFTTESDVWSFGV 223

Query: 371 VLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDPQLKGRFPL 421
           +L E+ T          N +      +  ++   RP     C   +  +M          
Sbjct: 224 ILWEIFTYGKQPWFQLSNTEVIECITQGRVL--ERP---RVCPKEVYDVM---------- 268

Query: 422 KAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                     L C Q+EP +R  ++ I++ L  
Sbjct: 269 ----------LGCWQREPQQRLNIKEIYKILHA 291

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 34/270 (12%), Positives = 72/270 (26%), Gaps = 54/270 (20%)

Query: 223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI-----YGRSDGPP 277
           FI   + +   Q   + ++           R  +Y      +L         +  +    
Sbjct: 150 FIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYP-RMQSNLQTFGEVLLSHSSTHKSL 208

Query: 278 IDWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
              + R+++ L   + L  LH  G       P           +I +D+     L+G+  
Sbjct: 209 -VHHARLQLTLQVIRLLASLHHYGLVHTYLRP----------VDIVLDQRGGVFLTGFEH 257

Query: 331 A---GHIPETDISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNL 382
               G    + I          +   L        L+T   + W+ G+ +  +       
Sbjct: 258 LVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD--- 314

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER 442
                           P   D          +     P    + V  +    L+    +R
Sbjct: 315 ---------------LPNTDDAALGGSEWIFRSCKNIP----QPVRALLEGFLRYPKEDR 355

Query: 443 PTMRSIFEELDRQESRKSSSSTVRRASVEG 472
                  E  + ++ R   S+ +     +G
Sbjct: 356 LLPLQAMETPEYEQLRTELSAALPLYQTDG 385

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 60/272 (22%), Positives = 102/272 (37%), Gaps = 65/272 (23%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-DRLIYG 271
           + + + + + I+++  +  + +H N+  LLG   +DG     +I E    G+L + L   
Sbjct: 112 DATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP--LYVIVEYASKGNLREYLQAR 169

Query: 272 RSDGPPIDWNTR------------VKIALCAAQGLTFLHEEGPFQAMYNEF-----STAN 314
           R  G    +N              V  A   A+G+ +L           +      +  N
Sbjct: 170 RPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS--------KKCIHRDLAARN 221

Query: 315 IQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFG 369
           + + +D   K++ +G A  I   D    +     L V     E L   + T +S+VWSFG
Sbjct: 222 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGR-LPVKWMAPEALFDRIYTHQSDVWSFG 280

Query: 370 IVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLK 422
           ++L E+ T       G              L K     L +  R    MD       P  
Sbjct: 281 VLLWEIFTLGGSPYPGVPV---------EELFK----LLKEGHR----MDK------PSN 317

Query: 423 AARTVADIALRCLQKEPSERPTMRSIFEELDR 454
               +  +   C    PS+RPT + + E+LDR
Sbjct: 318 CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 349

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 41/245 (16%)

Query: 221 KEFINDVNTLASLQHPNLCKLLG-FHARDGSDQRMLIYERLFH-------------GSLD 266
           ++   +V  LA L H N+    G +   D   +                       G+L+
Sbjct: 49  EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLE 108

Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS 326
           + I  R  G  +D    +++     +G+ ++H +     +  +   +NI +      K+ 
Sbjct: 109 QWIEKRR-GEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIG 164

Query: 327 GYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR 385
            +G    +        S      +S E +       + ++++ G++L ELL         
Sbjct: 165 DFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCD----- 219

Query: 386 HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM 445
              E                  + + D  +   F  K       +  + L K+P +RP  
Sbjct: 220 TAFETSKF-------------FTDLRDGIISDIFDKKE----KTLLQKLLSKKPEDRPNT 262

Query: 446 RSIFE 450
             I  
Sbjct: 263 SEILR 267

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 51/267 (19%), Positives = 87/267 (32%), Gaps = 62/267 (23%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDR-LIYGR 272
             S Q   +F+ +   ++   H N+ + +G   +     R ++ E +  G L   L   R
Sbjct: 112 VCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP--RFILLELMAGGDLKSFLRETR 169

Query: 273 ---SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANI---QIDKDF 321
              S    +     + +A   A G  +L E        N F     +  N          
Sbjct: 170 PRPSQPSSLAMLDLLHVARDIACGCQYLEE--------NHFIHRDIAARNCLLTCPGPGR 221

Query: 322 SAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELL 376
            AK+  +G A  I            A L V     E    G+ T K++ WSFG++L E+ 
Sbjct: 222 VAKIGDFGMARDIYRAGYYRKG-GCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 280

Query: 377 T-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDPQLKGRFPLKAARTV 427
           +        + N +          +    P    +C   +  IM                
Sbjct: 281 SLGYMPYPSKSNQEVLEFVTSGGRMD--PP---KNCPGPVYRIM---------------- 319

Query: 428 ADIALRCLQKEPSERPTMRSIFEELDR 454
                +C Q +P +RP    I E ++ 
Sbjct: 320 ----TQCWQHQPEDRPNFAIILERIEY 342

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 65/272 (23%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSL------- 265
           + + + + + ++++  +  + +H N+  LLG   +DG     +I E    G+L       
Sbjct: 78  DATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LYVIVEYASKGNLREYLRAR 135

Query: 266 ------DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STAN 314
                       R     + +   V      A+G+ +L           +      +  N
Sbjct: 136 RPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS--------QKCIHRDLAARN 187

Query: 315 IQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFG 369
           + + ++   K++ +G A  I   D    +     L V     E L   + T +S+VWSFG
Sbjct: 188 VLVTENNVMKIADFGLARDINNIDYYKKTTNGR-LPVKWMAPEALFDRVYTHQSDVWSFG 246

Query: 370 IVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLK 422
           +++ E+ T       G              L K     L +  R    MD       P  
Sbjct: 247 VLMWEIFTLGGSPYPGIPV---------EELFK----LLKEGHR----MDK------PAN 283

Query: 423 AARTVADIALRCLQKEPSERPTMRSIFEELDR 454
               +  +   C    PS+RPT + + E+LDR
Sbjct: 284 CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 315

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 55/274 (20%), Positives = 101/274 (36%), Gaps = 42/274 (15%)

Query: 195 SFGD-----DASTSKKF---EATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLG-FH 245
           S+G        S  K     E     +  + +  +  +++VN L  L+HPN+ +      
Sbjct: 18  SYGRCQKIRRKSDGKILVWKELDYGSMTEAEK--QMLVSEVNLLRELKHPNIVRYYDRII 75

Query: 246 ARDGSDQRMLIY-ERLFHGSLDRLI-YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPF 303
             D ++  + I  E    G L  +I  G  +   +D    +++       L   H     
Sbjct: 76  --DRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG 133

Query: 304 QA--MYNEFSTANIQIDKDFSAKLSGYGCAGHI-PETDISNSSVAAAN-LSVETLERGLL 359
               ++ +   AN+ +D   + KL  +G A  +  +T  + + V     +S E + R   
Sbjct: 134 GHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSY 193

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
             KS++WS G +L EL                       PF A       +     +G+F
Sbjct: 194 NEKSDIWSLGCLLYELCALM------------------PPFTAFS--QKELAGKIREGKF 233

Query: 420 ---PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
              P + +  + +I  R L  +   RP++  I E
Sbjct: 234 RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE 267

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 58/285 (20%), Positives = 107/285 (37%), Gaps = 74/285 (25%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-------- 265
           N S   +++ +++ N L  + HP++ KL G  ++DG    +LI E   +GSL        
Sbjct: 64  NASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP--LLLIVEYAKYGSLRGFLRESR 121

Query: 266 -------------DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-- 310
                        +       D   +     +  A   +QG+ +L E         +   
Sbjct: 122 KVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAE--------MKLVH 173

Query: 311 ---STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPK 362
              +  NI + +    K+S +G +  + E D          + V     E+L   + T +
Sbjct: 174 RDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGR-IPVKWMAIESLFDHIYTTQ 232

Query: 363 SNVWSFGIVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL 415
           S+VWSFG++L E++T       G              L       L    R    M+   
Sbjct: 233 SDVWSFGVLLWEIVTLGGNPYPGIPP---------ERLFN----LLKTGHR----MER-- 273

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR--QESR 458
               P   +  +  + L+C ++EP +RP    I ++L++   + R
Sbjct: 274 ----PDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRR 314

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 41/256 (16%), Positives = 85/256 (33%), Gaps = 54/256 (21%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
                 E + + N +  L +P + +++G       +  ML+ E    G L++  Y +   
Sbjct: 58  DPALKDELLAEANVMQQLDNPYIVRMIGICEA---ESWMLVMEMAELGPLNK--YLQQ-N 111

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STANIQIDKDFSAKLSGYGC 330
             +     +++    + G+ +L E          F     +  N+ +     AK+S +G 
Sbjct: 112 RHVKDKNIIELVHQVSMGMKYLEESN--------FVHRDLAARNVLLVTQHYAKISDFGL 163

Query: 331 AGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFGIVLLELLT-------G 378
           +  +   +    +       V     E +     + KS+VWSFG+++ E  +       G
Sbjct: 164 SKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG 223

Query: 379 RKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
            K  +     E+               R+            P    R + D+   C   +
Sbjct: 224 MKGSEVTAMLEKGE-------------RM-----GC-----PAGCPREMYDLMNLCWTYD 260

Query: 439 PSERPTMRSIFEELDR 454
              RP   ++   L  
Sbjct: 261 VENRPGFAAVELRLRN 276

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 54/274 (19%), Positives = 90/274 (32%), Gaps = 72/274 (26%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS 273
                  +EF ++    A LQHPN+  LLG   +D      +I+    HG L    +   
Sbjct: 50  KAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD--QPLSMIFSYCSHGDLHE--FLVM 105

Query: 274 DGPPIDWNTR---------------VKIALCAAQGLTFLHEEGPFQAMYNEF-----STA 313
             P  D  +                V +    A G+ +L          +       +T 
Sbjct: 106 RSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS--------HHVVHKDLATR 157

Query: 314 NIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSF 368
           N+ +    + K+S  G    +   D       +  L +     E +  G  +  S++WS+
Sbjct: 158 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSL-LPIRWMAPEAIMYGKFSIDSDIWSY 216

Query: 369 GIVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDPQLKGRF 419
           G+VL E+ +       G  N D       R ++    P   DDC   +  +M        
Sbjct: 217 GVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVL--PCP---DDCPAWVYALM-------- 263

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                       + C  + PS RP  + I   L 
Sbjct: 264 ------------IECWNEFPSRRPRFKDIHSRLR 285

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 54/299 (18%), Positives = 103/299 (34%), Gaps = 69/299 (23%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEA--TVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           + I  G SS +++       +  K+  A   V      +Q +  + N++  L  LQ  + 
Sbjct: 15  KQIGSGGSSKVFQVL-----NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 69

Query: 239 C--KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
              +L  +     +DQ + +     +  L+  +  +     ID   R        + +  
Sbjct: 70  KIIRLYDYEI---TDQYIYMVMECGNIDLNSWL--KKKKS-IDPWERKSYWKNMLEAVHT 123

Query: 297 LHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS---NSSV-- 344
           +H+ G       P          AN  I      KL  +G A  +     S   +S V  
Sbjct: 124 IHQHGIVHSDLKP----------ANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGT 172

Query: 345 ----------AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                       ++       +  ++PKS+VWS G +L  +  G                
Sbjct: 173 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYG-------KT------- 218

Query: 395 KWSRPFLADD---CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
               PF        +L  I+DP  +  FP    + + D+   CL+++P +R ++  +  
Sbjct: 219 ----PFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 273

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 61/358 (17%), Positives = 119/358 (33%), Gaps = 70/358 (19%)

Query: 123 PHTQSAASLKATGSFKSGTASGPLFASGPLPLPPTGTGTLRNFPLDEVAAACHNFFS-DR 181
            H  S+  +      K   A+         P   T      +   +E  +     +S  +
Sbjct: 3   HHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSILK 62

Query: 182 CISEGLSSVMYRASFGDDASTSKKFEA--TVTRLNPSSQGVKEFINDVNTLASLQHPNL- 238
            I  G SS +++       +  K+  A   V      +Q +  + N++  L  LQ  +  
Sbjct: 63  QIGSGGSSKVFQVL-----NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK 117

Query: 239 -CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
             +L  +     +DQ + +     +  L+  +  +     ID   R        + +  +
Sbjct: 118 IIRLYDYEI---TDQYIYMVMECGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTI 171

Query: 298 HEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP--ETDISNSSVA--- 345
           H+ G       P          AN  I      KL  +G A  +    T +   S     
Sbjct: 172 HQHGIVHSDLKP----------ANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGAV 220

Query: 346 ----------AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK 395
                      ++       +  ++PKS+VWS G +L  +  G+                
Sbjct: 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT--------------- 265

Query: 396 WSRPF---LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
              PF   +    +L  I+DP  +  FP    + + D+   CL+++P +R ++  +  
Sbjct: 266 ---PFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 54/267 (20%), Positives = 94/267 (35%), Gaps = 54/267 (20%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
              +   +  ++++  ++ L QH N+  LLG     G    ++I E   +G L  L + R
Sbjct: 87  TAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP--VLVITEYCCYGDL--LNFLR 142

Query: 273 SDGPPIDWNTR-------------VKIALCAAQGLTFLHEEGPFQAMYNEF-----STAN 314
                ++ +               +  +   AQG+ FL                  +  N
Sbjct: 143 RKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS--------KNCIHRDVAARN 194

Query: 315 IQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFG 369
           + +     AK+  +G A  I           A  L V     E++   + T +S+VWS+G
Sbjct: 195 VLLTNGHVAKIGDFGLARDIMNDSNYIVKGNAR-LPVKWMAPESIFDCVYTVQSDVWSYG 253

Query: 370 IVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVA 428
           I+L E+ + G           +    K     + D  +    M        P  A + + 
Sbjct: 254 ILLWEIFSLGLNPYPGILVNSK--FYK----LVKDGYQ----MAQ------PAFAPKNIY 297

Query: 429 DIALRCLQKEPSERPTMRSIFEELDRQ 455
            I   C   EP+ RPT + I   L  Q
Sbjct: 298 SIMQACWALEPTHRPTFQQICSFLQEQ 324

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 55/249 (22%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSLDRLIYGRSD 274
            S+  +    ++     L+H N+ + LG  + +G    + I+ E++  GSL  L+  RS 
Sbjct: 59  DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGF---IKIFMEQVPGGSLSALL--RSK 113

Query: 275 GPPIDWNTRVKIALCAAQ---GLTFLHEEG-------PFQAMYNEFSTANIQID-KDFSA 323
             P+  N +  I     Q   GL +LH+                     N+ I+      
Sbjct: 114 WGPLKDNEQT-IGFYTKQILEGLKYLHDNQIVHRDIKG----------DNVLINTYSGVL 162

Query: 324 KLSGYGCAGHIPETDISNSSVAA-----ANLSVETLERGLLTPKSNVWSFGIVLLELLTG 378
           K+S +G +  +   +    +        A   ++   RG     +++WS G  ++E+ TG
Sbjct: 163 KISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGY-GKAADIWSLGCTIIEMATG 221

Query: 379 RKNLDSRHPKEERNLVKWS---RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
                 + P        +     P  A    +  +   ++    P   +       L+C 
Sbjct: 222 ------KPP--------FYELGEPQAA----MFKVGMFKVHPEIPESMSAEAKAFILKCF 263

Query: 436 QKEPSERPT 444
           + +P +R  
Sbjct: 264 EPDPDKRAC 272

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 65/272 (23%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSL------- 265
           + + + + + ++++  +  + +H N+  LLG   +DG     +I E    G+L       
Sbjct: 124 DATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP--LYVIVEYASKGNLREYLRAR 181

Query: 266 ------DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STAN 314
                       R     + +   V      A+G+ +L           +      +  N
Sbjct: 182 RPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS--------QKCIHRDLAARN 233

Query: 315 IQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFG 369
           + + ++   K++ +G A  I   D    +     L V     E L   + T +S+VWSFG
Sbjct: 234 VLVTENNVMKIADFGLARDINNIDYYKKTTNGR-LPVKWMAPEALFDRVYTHQSDVWSFG 292

Query: 370 IVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLK 422
           +++ E+ T       G              L K     L +  R    MD       P  
Sbjct: 293 VLMWEIFTLGGSPYPGIPV---------EELFK----LLKEGHR----MDK------PAN 329

Query: 423 AARTVADIALRCLQKEPSERPTMRSIFEELDR 454
               +  +   C    PS+RPT + + E+LDR
Sbjct: 330 CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 361

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 49/260 (18%), Positives = 78/260 (30%), Gaps = 63/260 (24%)

Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSLDRLI--YGRSDGPPIDWNTR 283
           +   A L  P +  L G          + I+ E L  GSL +LI   G        +   
Sbjct: 101 LVACAGLSSPRIVPLYGAVR---EGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLG 157

Query: 284 VKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKD-FSAKLSGYGCAGHIP 335
                 A +GL +LH                      N+ +  D   A L  +G A  + 
Sbjct: 158 -----QALEGLEYLHTRRILHGDVKA----------DNVLLSSDGSRAALCDFGHALCLQ 202

Query: 336 ETDISNSSVAAANL-------SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
              +  S +    +       + E +       K ++WS   ++L +L G          
Sbjct: 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGC--------- 253

Query: 389 EERNLVKWSRPFLADDCRLSLIM----DPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
                     P+     R  L +    +P      P   A   A      L+KEP  R +
Sbjct: 254 ---------HPW-TQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRAS 303

Query: 445 ----MRSIFEELDRQESRKS 460
                R + + L      KS
Sbjct: 304 AMELRRKVGKALQEVGGLKS 323

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 51/270 (18%), Positives = 92/270 (34%), Gaps = 56/270 (20%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR 272
           +      +  ++++  L+ L  H N+  LLG     G    ++I E   +G L  L + R
Sbjct: 64  SAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP--TLVITEYCCYGDL--LNFLR 119

Query: 273 SDGPPIDWNTR-----------------VKIALCAAQGLTFLHEEGPFQAMYNEF----- 310
                   +                   +  +   A+G+ FL                  
Sbjct: 120 RKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS--------KNCIHRDL 171

Query: 311 STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKSNVW 366
           +  NI +      K+  +G A  I           A      ++ E++   + T +S+VW
Sbjct: 172 AARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVW 231

Query: 367 SFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAAR 425
           S+GI L EL + G           +    K     + +  R    M        P  A  
Sbjct: 232 SYGIFLWELFSLGSSPYPGMPVDSK--FYK----MIKEGFR----MLS------PEHAPA 275

Query: 426 TVADIALRCLQKEPSERPTMRSIFEELDRQ 455
            + DI   C   +P +RPT + I + +++Q
Sbjct: 276 EMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 52/270 (19%), Positives = 92/270 (34%), Gaps = 59/270 (21%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSL------- 265
             +    +  ++++  L  +  H N+  LLG   + G    M+I E    G+L       
Sbjct: 68  GATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG-GPLMVIVEFCKFGNLSTYLRSK 126

Query: 266 ------DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STAN 314
                  ++         +     +  +   A+G+ FL           +      +  N
Sbjct: 127 RNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--------RKCIHRDLAARN 178

Query: 315 IQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPKSNVWSFG 369
           I + +    K+  +G A  I +         A  L +     ET+   + T +S+VWSFG
Sbjct: 179 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDAR-LPLKWMAPETIFDRVYTIQSDVWSFG 237

Query: 370 IVLLELLT-GRKNLDSRHP----KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           ++L E+ + G        P    K +    +     L +  R    M        P    
Sbjct: 238 VLLWEIFSLGAS------PYPGVKIDEEFCR----RLKEGTR----MRA------PDYTT 277

Query: 425 RTVADIALRCLQKEPSERPTMRSIFEELDR 454
             +    L C   EPS+RPT   + E L  
Sbjct: 278 PEMYQTMLDCWHGEPSQRPTFSELVEHLGN 307

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 62.7 bits (152), Expect = 6e-11
 Identities = 37/261 (14%), Positives = 77/261 (29%), Gaps = 44/261 (16%)

Query: 218 QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL----DRLIYGRS 273
           +    FI   + +   Q   + ++           R  +Y      +L    + L+   S
Sbjct: 140 KVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYP-RMQSNLQTFGEVLLSHSS 198

Query: 274 DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA-- 331
               +  + R+++ L   + L  LH  G    ++      +I +D+     L+G+     
Sbjct: 199 THKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVR 255

Query: 332 -GHIPETDISNSSVA------AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDS 384
            G    + +S            A +S     R L+T   + W+ G+V+  +         
Sbjct: 256 DGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD----- 310

Query: 385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
                         P   D          +     P    + V  +    L+    +R  
Sbjct: 311 -------------LPITKDAALGGSEWIFRSCKNIP----QPVRALLEGFLRYPKEDRLL 353

Query: 445 MRSI-----FEELDRQESRKS 460
                    +E+L  + S   
Sbjct: 354 PLQAMETPEYEQLRTELSAAL 374

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 54/299 (18%), Positives = 104/299 (34%), Gaps = 69/299 (23%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEA--TVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           + I  G SS +++       +  K+  A   V      +Q +  + N++  L  LQ  + 
Sbjct: 34  KQIGSGGSSKVFQVL-----NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 88

Query: 239 --CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
              +L  +     +DQ + +     +  L+  +  +     ID   R        + +  
Sbjct: 89  KIIRLYDYEI---TDQYIYMVMECGNIDLNSWL--KKKKS-IDPWERKSYWKNMLEAVHT 142

Query: 297 LHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDIS---NSSV-- 344
           +H+ G       P          AN  I      KL  +G A  +     S   +S V  
Sbjct: 143 IHQHGIVHSDLKP----------ANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGT 191

Query: 345 ----------AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV 394
                       ++       +  ++PKS+VWS G +L  +  G+               
Sbjct: 192 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK--------------- 236

Query: 395 KWSRPFLADD---CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
               PF        +L  I+DP  +  FP    + + D+   CL+++P +R ++  +  
Sbjct: 237 ---TPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 49/267 (18%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY---ERLFHGSLDRL 268
            L        + I ++  L     P +    G    DG      I    E +  GSLD++
Sbjct: 67  HLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE-----ISICMEHMDGGSLDQV 121

Query: 269 IYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY 328
           +        I      K+++   +GLT+L E+   + M+ +   +NI ++     KL  +
Sbjct: 122 L---KKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDF 176

Query: 329 GCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGR-------- 379
           G +G + ++ ++NS V   + +S E L+    + +S++WS G+ L+E+  GR        
Sbjct: 177 GVSGQLIDS-MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA 235

Query: 380 -----------KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD----------PQL-KG 417
                      +   +  P   R   +    F  D      I +          P+L  G
Sbjct: 236 KELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSG 295

Query: 418 RFPLKAARTVADIALRCLQKEPSERPT 444
            F L+    V     +CL K P+ER  
Sbjct: 296 VFSLEFQDFVN----KCLIKNPAERAD 318

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 47/255 (18%), Positives = 97/255 (38%), Gaps = 57/255 (22%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGFHARD-GSDQRM--LIYERLFHGSLDRLIYGRSDGP 276
           +K F  +V+  + L H N+  ++     D   +     L+ E +   +L   I   S GP
Sbjct: 55  LKRFEREVHNSSQLSHQNIVSMI-----DVDEEDDCYYLVMEYIEGPTLSEYI--ESHGP 107

Query: 277 PIDWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYG 329
            +  +T +        G+   H+         P           NI ID + + K+  +G
Sbjct: 108 -LSVDTAINFTNQILDGIKHAHDMRIVHRDIKP----------QNILIDSNKTLKIFDFG 156

Query: 330 CAGHIPETDISNSSVA---AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRH 386
            A  + ET ++ ++         S E  +       ++++S GIVL E+L G        
Sbjct: 157 IAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGE------- 209

Query: 387 PKEERNLVKWSRPFLADDCRLSLIM------DPQLKGRFPLKAARTVADIALRCLQKEPS 440
                       PF  +   +S+ +       P +         ++++++ LR  +K+ +
Sbjct: 210 -----------PPFNGETA-VSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKA 257

Query: 441 ERP-TMRSIFEELDR 454
            R  T++ + ++L  
Sbjct: 258 NRYKTIQEMKDDLSS 272

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 76/281 (27%)

Query: 214 NPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSL-------- 265
             S+    +F  +   +A   +PN+ KLLG  A        L++E + +G L        
Sbjct: 88  EASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP--MCLLFEYMAYGDLNEFLRSMS 145

Query: 266 -------------DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-- 310
                         R        PP+    ++ IA   A G+ +L E         +F  
Sbjct: 146 PHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE--------RKFVH 197

Query: 311 ---STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPK 362
              +T N  + ++   K++ +G + +I   D   +    A + +     E++     T +
Sbjct: 198 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDA-IPIRWMPPESIFYNRYTTE 256

Query: 363 SNVWSFGIVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL--IMDP 413
           S+VW++G+VL E+ +       G  + +  +   + N++  + P   ++C L L  +M  
Sbjct: 257 SDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNIL--ACP---ENCPLELYNLM-- 309

Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                               C  K P++RP+  SI   L R
Sbjct: 310 ------------------RLCWSKLPADRPSFCSIHRILQR 332

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 43/271 (15%)

Query: 182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL 241
            I +G    +++     D  T K     +  L  +   +++   ++  L+    P + K 
Sbjct: 29  KIGKGSFGEVFKGI---DNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKY 85

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG 301
            G + +D   +  +I E L  GS   L+       P+D      I     +GL +LH E 
Sbjct: 86  YGSYLKD--TKLWIIMEYLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSEK 139

Query: 302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV--------ET 353
               ++ +   AN+ + +    KL+ +G AG + +T          N  V        E 
Sbjct: 140 ---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT------QIKRNTFVGTPFWMAPEV 190

Query: 354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP 413
           +++     K+++WS GI  +EL  G       HP +   L+  + P             P
Sbjct: 191 IKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNP-------------P 237

Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPT 444
            L+G +       V      CL KEPS RPT
Sbjct: 238 TLEGNYSKPLKEFVE----ACLNKEPSFRPT 264

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 49/251 (19%)

Query: 212 RLNPSSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI- 269
           R   +SQ  K  + D++ ++ ++  P      G   R+G     +  E L   SLD+   
Sbjct: 41  RATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG--DVWICME-LMDTSLDKFYK 97

Query: 270 YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG 329
                G  I  +   KIA+   + L  LH +     ++ +   +N+ I+     K+  +G
Sbjct: 98  QVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFG 155

Query: 330 CAGHIPETDISNSSVAAANLSVETL-----ER--GLLTP-----KSNVWSFGIVLLELLT 377
            +G++      +    A ++          ER    L       KS++WS GI ++EL  
Sbjct: 156 ISGYL-----VDDV--AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAI 208

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLK-GRFPLKAARTVADIALR 433
                  R P        W  PF      L  +++   PQL   +F  +     +    +
Sbjct: 209 L------RFP-----YDSWGTPFQQ----LKQVVEEPSPQLPADKFSAEFVDFTS----Q 249

Query: 434 CLQKEPSERPT 444
           CL+K   ERPT
Sbjct: 250 CLKKNSKERPT 260

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 54/317 (17%), Positives = 109/317 (34%), Gaps = 67/317 (21%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTL-ASLQHPNLCKL 241
           +  G    +++        T         R + + +  K  + D++ +  S   P + + 
Sbjct: 33  MGSGTCGQVWKMR---FRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQC 89

Query: 242 LGFHARDGSDQRMLIY---ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
            G    +       ++   E L     ++L   +    PI      K+ +   + L +L 
Sbjct: 90  FGTFITNTD-----VFIAME-LMGTCAEKLK--KRMQGPIPERILGKMTVAIVKALYYLK 141

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSV------AAANLSVE 352
           E+     ++ +   +NI +D+    KL  +G +G + +    + S       A   +   
Sbjct: 142 EK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPP 199

Query: 353 TLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD 412
              +     +++VWS GI L+EL TG+    +               F      L+ ++ 
Sbjct: 200 DPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT-----------DFEV----LTKVLQ 244

Query: 413 ---PQLKG--RFPLKAARTVADIALRCLQKEPSERPT-------------------MRSI 448
              P L G   F       V      CL K+  +RP                    + S 
Sbjct: 245 EEPPLLPGHMGFSGDFQSFVK----DCLTKDHRKRPKYNKLLEHSFIKRYETLEVDVASW 300

Query: 449 FEE-LDRQESRKSSSST 464
           F++ + + ES +S  S+
Sbjct: 301 FKDVMAKTESPRSGPSS 317

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 50/242 (20%), Positives = 98/242 (40%), Gaps = 35/242 (14%)

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           SS+  +E   +V  LA+++HPN+ +       +GS    ++ +    G L + I     G
Sbjct: 63  SSKEREESRREVAVLANMKHPNIVQYRESFEENGS--LYIVMDYCEGGDLFKRIN-AQKG 119

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
                +  +   +     L  +H+      ++ +  + NI + KD + +L  +G A  + 
Sbjct: 120 VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLN 176

Query: 336 ET-DISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL 393
            T +++ + +     LS E  E      KS++W+ G VL EL T +              
Sbjct: 177 STVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLK-------------- 222

Query: 394 VKWSRPFLADDCR--LSLIMDPQLKGRF---PLKAARTVADIALRCLQKEPSERPTMRSI 448
                 F A   +  +  I+     G F    L  +  +  +  +  ++ P +RP++ SI
Sbjct: 223 ----HAFEAGSMKNLVLKII----SGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSI 274

Query: 449 FE 450
            E
Sbjct: 275 LE 276

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 53/268 (19%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI-YGRSDGPPI 278
           V     +++      HPN+         D  ++  ++   + +GS   LI     DG   
Sbjct: 70  VTFLQGELHVSKLFNHPNIVPYRATFIAD--NELWVVTSFMAYGSAKDLICTHFMDGMNE 127

Query: 279 DWNTRVKIAL-C--AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
                  IA       + L ++H  G    ++     ++I I  D    LSG      + 
Sbjct: 128 LA-----IAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMI 179

Query: 336 ETDI-SNSSVAAANLSV--------ETLERGLL--TPKSNVWSFGIVLLELLTGRKNLDS 384
                          SV        E L++ L     KS+++S GI   EL  G      
Sbjct: 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKD 239

Query: 385 RHP-KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIAL----------- 432
               +     +  + P L D   +          R    +  + +               
Sbjct: 240 MPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPS 299

Query: 433 ----------------RCLQKEPSERPT 444
                           +CLQ+ P  RP+
Sbjct: 300 HPYHRTFSPHFHHFVEQCLQRNPDARPS 327

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 54/278 (19%), Positives = 93/278 (33%), Gaps = 67/278 (24%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSL------- 265
              S   +  ++++  +  L  H N+  LLG     G     LI+E   +G L       
Sbjct: 86  KADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP--IYLIFEYCCYGDLLNYLRSK 143

Query: 266 -------------DRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-- 310
                         + +    D   + +   +  A   A+G+ FL               
Sbjct: 144 REKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF--------KSCVH 195

Query: 311 ---STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-----ETLERGLLTPK 362
              +  N+ +      K+  +G A  I           A  L V     E+L  G+ T K
Sbjct: 196 RDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNAR-LPVKWMAPESLFEGIYTIK 254

Query: 363 SNVWSFGIVLLELLT-GRKNLDSRHP----KEERNLVKWSRPFLADDCRLSLIMDPQLKG 417
           S+VWS+GI+L E+ + G       +P      + N  K     + +  +    MD     
Sbjct: 255 SDVWSYGILLWEIFSLG------VNPYPGIPVDANFYK----LIQNGFK----MDQ---- 296

Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ 455
             P  A   +  I   C   +  +RP+  ++   L  Q
Sbjct: 297 --PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 332

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 44/303 (14%), Positives = 100/303 (33%), Gaps = 51/303 (16%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASL 233
            ++   + + EG  S +              +   + R+     Q  +E   + +     
Sbjct: 29  KHYLFIQKLGEGGFSYVDLVE---GLHDGHFY--ALKRILCHEQQDREEAQREADMHRLF 83

Query: 234 QHPNLCKLLG-FHARDGSDQRMLI----YERLFHGSL-DRLIYGRSDGPPIDWNTRVKIA 287
            HPN+ +L+       G+     +    ++R   G+L + +   +  G  +  +  + + 
Sbjct: 84  NHPNILRLVAYCLRERGAKHEAWLLLPFFKR---GTLWNEIERLKDKGNFLTEDQILWLL 140

Query: 288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAA 347
           L   +GL  +H +G     + +    NI +  +    L   G             S  A 
Sbjct: 141 LGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMN--QACIHVEGSRQAL 195

Query: 348 NLSVETLERG----------------LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER 391
            L     +R                 ++  +++VWS G VL  ++ G        P +  
Sbjct: 196 TLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFG------EGPYDMV 249

Query: 392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE 451
                S         ++L +  QL      + +  +  +    +  +P +RP +  +  +
Sbjct: 250 FQKGDS---------VALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQ 300

Query: 452 LDR 454
           L+ 
Sbjct: 301 LEA 303

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 29/260 (11%), Positives = 53/260 (20%), Gaps = 41/260 (15%)

Query: 223 FINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI----YGRSDGPPI 278
            +   + +A    P   +L            +L+        L+ L     +        
Sbjct: 133 LLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMP-AASVDLELLFSTLDFVYVFRGDE 191

Query: 279 DWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
                  +     +    L  +G       P           N+ I  D    L      
Sbjct: 192 GILALHILTAQLIRLAANLQSKGLVHGHFTP----------DNLFIMPDGRLMLGDVSAL 241

Query: 332 GHIPETDISNSSVAAANLS---VETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK 388
             +       +S      +            T   N W  G+ +  +           P 
Sbjct: 242 WKVGTR--GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCL------FLPF 293

Query: 389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI 448
                             L +     L           V  +  R L  +   R      
Sbjct: 294 GLVTP---GIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEA 350

Query: 449 -----FEELDRQESRKSSSS 463
                F +L  + S   S+ 
Sbjct: 351 METPEFLQLQNEISSSLSTG 370

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 41/229 (17%), Positives = 70/229 (30%), Gaps = 52/229 (22%)

Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHG-SLDRLIYGRSDGPPIDWNTRVKIALC 289
             LQ P++   +  H     D ++ +  RL +G  L  ++  R  GP +     V I   
Sbjct: 89  GRLQEPHV---VPIHDFGEIDGQLYVDMRLINGVDLAAML--RRQGP-LAPPRAVAIVRQ 142

Query: 290 AAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNS 342
               L   H  G       P           NI +  D  A L  +G A    +  ++  
Sbjct: 143 IGSALDAAHAAGATHRDVKP----------ENILVSADDFAYLVDFGIASATTDEKLTQL 192

Query: 343 SVA---AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP 399
                    ++ E       T ++++++   VL E LTG                    P
Sbjct: 193 GNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGS------------------PP 234

Query: 400 FLADDCRLSLIM-----DPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
           +  D   LS++                        +  R + K P +R 
Sbjct: 235 YQGDQ--LSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRY 281

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 59/258 (22%)

Query: 212 RLNPSSQGVKEFINDVNT-LASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI- 269
           R     +  K+ + D++  + S   P + +  G   R+G     +  E L   S D+   
Sbjct: 56  RSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG--DCWICME-LMSTSFDKFYK 112

Query: 270 -YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG--------PFQAMYNEFSTANIQIDKD 320
                    I      KI L   + L  L E          P          +NI +D+ 
Sbjct: 113 YVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKP----------SNILLDRS 162

Query: 321 FSAKLSGYGCAGHIPETDISNSSVAAAN-------LSVETLERGLLTP----KSNVWSFG 369
            + KL  +G +G +        S+A          ++ E ++          +S+VWS G
Sbjct: 163 GNIKLCDFGISGQL------VDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLG 216

Query: 370 IVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD---PQLKGRFPLKAART 426
           I L EL TGR      +             F      L+ ++    PQL      + + +
Sbjct: 217 ITLYELATGRFPYPKWNS-----------VFDQ----LTQVVKGDPPQLSNSEEREFSPS 261

Query: 427 VADIALRCLQKEPSERPT 444
             +    CL K+ S+RP 
Sbjct: 262 FINFVNLCLTKDESKRPK 279

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 33/278 (11%)

Query: 182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKL 241
            I  G ++V+  A     A   +K       L      + E + ++  ++   HPN+   
Sbjct: 22  VIGSGATAVVQAAY---CAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSY 78

Query: 242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWN--TRVKIA-LC--AAQGLTF 296
                    D+  L+ + L  GS+  +I                  IA +     +GL +
Sbjct: 79  YTSFVVK--DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEY 136

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV----- 351
           LH+ G    ++ +    NI + +D S +++ +G +  +       +        V     
Sbjct: 137 LHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSAFLATG-GDITRNKVRKTFVGTPCW 192

Query: 352 ---ETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHP-KEERNLVKWSRPFLADDCR 406
              E +E+      K+++WSFGI  +EL TG        P K     ++   P L    +
Sbjct: 193 MAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQ 252

Query: 407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
                D ++  ++  K+ R    +   CLQK+P +RPT
Sbjct: 253 -----DKEMLKKYG-KSFR---KMISLCLQKDPEKRPT 281

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 48/275 (17%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             + EG    +Y+A       T +        +      ++E I +++ +     P++ K
Sbjct: 35  EKLGEGSYGSVYKAI---HKETGQIVAIKQVPVE---SDLQEIIKEISIMQQCDSPHVVK 88

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             G + ++      ++ E    GS+  +I  R     +  +    I     +GL +LH  
Sbjct: 89  YYGSYFKN--TDLWIVMEYCGAGSVSDII--RLRNKTLTEDEIATILQSTLKGLEYLHFM 144

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV--------E 352
                ++ +    NI ++ +  AKL+ +G AG + +T      +A  N  +        E
Sbjct: 145 R---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT------MAKRNTVIGTPFWMAPE 195

Query: 353 TLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV---KWSRPFLADDCRLSL 409
            ++       +++WS GI  +E+  G+      HP   R +        P        S 
Sbjct: 196 VIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM--RAIFMIPTNPPPTFRKPELWS- 252

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
                              D   +CL K P +R T
Sbjct: 253 ---DNFT------------DFVKQCLVKSPEQRAT 272

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 94/285 (32%)

Query: 214 NPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLD------ 266
             S    ++F  ++  L  L  HPN+  LLG     G     L  E   HG+L       
Sbjct: 63  YASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY--LYLAIEYAPHGNLLDFLRKS 120

Query: 267 -------RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF-----STAN 314
                        S    +     +  A   A+G+ +L ++         F     +  N
Sbjct: 121 RVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ--------FIHRDLAARN 172

Query: 315 IQIDKDFSAKLSGYGCA-----------GHIPETDISNSSVAAANLSV-----ETLERGL 358
           I + +++ AK++ +G +           G +P               V     E+L   +
Sbjct: 173 ILVGENYVAKIADFGLSRGQEVYVKKTMGRLP---------------VRWMAIESLNYSV 217

Query: 359 LTPKSNVWSFGIVLLELLT-------GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL-- 409
            T  S+VWS+G++L E+++       G    +      +   ++  +P    +C   +  
Sbjct: 218 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLE--KP---LNCDDEVYD 272

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           +M                     +C +++P ERP+   I   L+R
Sbjct: 273 LM--------------------RQCWREKPYERPSFAQILVSLNR 297

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 41/238 (17%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPID 279
           ++++I ++  LA+  HP + KLLG +  D   +  ++ E    G++D ++        + 
Sbjct: 60  LEDYIVEIEILATCDHPYIVKLLGAYYHD--GKLWIMIEFCPGGAVDAIM--LELDRGL- 114

Query: 280 WNTRVKIAL-C--AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE 336
             T  +I + C    + L FLH +     ++ +    N+ +  +   +L+ +G +    +
Sbjct: 115 --TEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK 169

Query: 337 TDI-SNSSV------AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE 389
           T    +S +      A   +  ET++      K+++WS GI L+E+          +P  
Sbjct: 170 TLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM- 228

Query: 390 ERNLV---KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
            R L+   K   P L    + S     + +            D     L K P  RP+
Sbjct: 229 -RVLLKIAKSDPPTLLTPSKWS----VEFR------------DFLKIALDKNPETRPS 269

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 44/273 (16%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLC 239
             I +G S  +Y A    D +T ++    + ++N   Q  KE I N++  +   ++PN+ 
Sbjct: 26  EKIGQGASGTVYTAM---DVATGQE--VAIRQMNLQQQPKKELIINEILVMRENKNPNIV 80

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
             L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH 
Sbjct: 81  NYLDSYLVG--DELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHS 134

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV-------- 351
                 ++ +  + NI +  D S KL+ +G    I       S++      V        
Sbjct: 135 NQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM------VGTPYWMAP 185

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
           E + R    PK ++WS GI+ +E++ G     + +P     L+  +              
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT------------ 233

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
            P+L+   P K +    D   RCL+ +  +R +
Sbjct: 234 -PELQN--PEKLSAIFRDFLNRCLEMDVEKRGS 263

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 32/217 (14%)

Query: 248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMY 307
             S     + E+      +           +     +  +   A+G+ FL      + ++
Sbjct: 160 QSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIH 216

Query: 308 NEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN----LSVETLERGLLTPKS 363
            + +  NI + +    K+  +G A  I +         A      ++ ET+   + T +S
Sbjct: 217 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS 276

Query: 364 NVWSFGIVLLELLT-GRKNLDSRHP----KEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
           +VWSFG++L E+ + G        P    K +    +     L +  R    M       
Sbjct: 277 DVWSFGVLLWEIFSLGAS------PYPGVKIDEEFCR----RLKEGTR----MRA----- 317

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ 455
            P      +    L C   EPS+RPT   + E L   
Sbjct: 318 -PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 37/274 (13%), Positives = 78/274 (28%), Gaps = 71/274 (25%)

Query: 210 VTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRMLIY-ERLFHGSL-D 266
             +    S   +  + +V   A L QH ++ +     A D     MLI  E    GSL D
Sbjct: 44  SKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD---HMLIQNEYCNGGSLAD 100

Query: 267 RLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDK 319
            +                 + L   +GL ++H          P          +NI I +
Sbjct: 101 AISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKP----------SNIFISR 150

Query: 320 DFSAKLSGYGCAGHIPETDISNSSVA----AANLSVETLERGLLTP-------------- 361
                 +          ++     +        +S   +E G                  
Sbjct: 151 TSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEG--DSRFLANEVLQENYTH 208

Query: 362 --KSNVWSFGIVLLELLTGR---KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
             K+++++  + ++         +N D  H      + +   P +     LS     +  
Sbjct: 209 LPKADIFALALTVVCAAGAEPLPRNGDQWH-----EIRQGRLPRIPQV--LS----QEFT 257

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                       ++    +  +P  RP+  ++ +
Sbjct: 258 ------------ELLKVMIHPDPERRPSAMALVK 279

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 42/264 (15%), Positives = 75/264 (28%), Gaps = 41/264 (15%)

Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKI 286
              L  L H N+ KL        +  ++LI E    GSL  ++   S+   +  +  + +
Sbjct: 58  FEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIV 117

Query: 287 ALCAAQGLTFLHEEG-------PFQAMYNEFSTANI----QIDKDFSAKLSGYGCAGHIP 335
                 G+  L E G       P           NI      D     KL+ +G A  + 
Sbjct: 118 LRDVVGGMNHLRENGIVHRNIKP----------GNIMRVIGEDGQSVYKLTDFGAARELE 167

Query: 336 ETDISNSSV-----AA----ANLSVETLERGLLTPKSNVWSFGIVLLELLTG----RKNL 382
           + +   S                 +    +       ++WS G+      TG    R   
Sbjct: 168 DDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227

Query: 383 DSRHPKEERNLVKWSRP-------FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
             R  KE    +   +P         A++  +    D  +           +  +    L
Sbjct: 228 GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANIL 287

Query: 436 QKEPSERPTMRSIFEELDRQESRK 459
           + +  +       F E      R 
Sbjct: 288 EADQEKCWGFDQFFAETSDILHRG 311

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 54/273 (19%), Positives = 109/273 (39%), Gaps = 46/273 (16%)

Query: 182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFI-NDVNTLASLQHPNLCK 240
            I EG + ++  A    +  + ++    V  ++   Q  +E + N+V  +   QH N+ +
Sbjct: 52  KIGEGSTGIVCLAR---EKHSGRQ--VAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           +   +     ++  ++ E L  G+L  ++        ++      +     Q L +LH +
Sbjct: 107 MYKSYLVG--EELWVLMEFLQGGALTDIV----SQVRLNEEQIATVCEAVLQALAYLHAQ 160

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV--------E 352
           G    ++ +  + +I +  D   KLS +G    I +      S+      V        E
Sbjct: 161 G---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSL------VGTPYWMAPE 211

Query: 353 TLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP-KEERNLVKWSRPFLADDCRLSLIM 411
            + R L   + ++WS GI+++E++ G     S  P +  + L     P L +  ++S   
Sbjct: 212 VISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVS--- 268

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPT 444
            P L+            D   R L ++P ER T
Sbjct: 269 -PVLR------------DFLERMLVRDPQERAT 288

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 40/277 (14%), Positives = 83/277 (29%), Gaps = 69/277 (24%)

Query: 212 RLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFH--------- 262
           ++  + + +   +++V  LASL H  + +         +  + +   +            
Sbjct: 38  KIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYC 97

Query: 263 --GSLDRLIYGRSDGPPIDWNTRVKIALCAAQ---GLTFLHEEG-------PFQAMYNEF 310
             G+L  LI   S+        R +      Q    L+++H +G       P        
Sbjct: 98  ENGTLYDLI--HSENLNQQ---RDEYWRLFRQILEALSYIHSQGIIHRDLKP-------- 144

Query: 311 STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETL---------------- 354
              NI ID+  + K+  +G A ++  +       +                         
Sbjct: 145 --MNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202

Query: 355 -ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP 413
              G    K +++S GI+  E++                 V      +    R   I  P
Sbjct: 203 DGTGHYNEKIDMYSLGIIFFEMIYP--------FSTGMERVN-----ILKKLRSVSIEFP 249

Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                F     +    I    +  +P++RP  R++  
Sbjct: 250 P---DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 43/220 (19%)

Query: 229 TLASLQHPNLCKLLGFHARDGSDQRMLIY---ERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
            LA + HP++ ++  F          + Y   E +   SL R          +     + 
Sbjct: 132 FLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIA 186

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA 345
             L     L++LH  G    +YN+    NI + ++   KL   G    I         + 
Sbjct: 187 YLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF----GYLY 238

Query: 346 --AANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD 403
                 + E + R   T  +++++ G  L  L       + R+                 
Sbjct: 239 GTPGFQAPEIV-RTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDG-------------- 283

Query: 404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP 443
                 + +        LK   +   +  R +  +P +R 
Sbjct: 284 ------LPEDDP----VLKTYDSYGRLLRRAIDPDPRQRF 313

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 42/264 (15%), Positives = 75/264 (28%), Gaps = 41/264 (15%)

Query: 227 VNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKI 286
              L  L H N+ KL        +  ++LI E    GSL  ++   S+   +  +  + +
Sbjct: 58  FEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIV 117

Query: 287 ALCAAQGLTFLHEEG-------PFQAMYNEFSTANI----QIDKDFSAKLSGYGCAGHIP 335
                 G+  L E G       P           NI      D     KL+ +G A  + 
Sbjct: 118 LRDVVGGMNHLRENGIVHRNIKP----------GNIMRVIGEDGQSVYKLTDFGAARELE 167

Query: 336 ETDISNSSV-----AA----ANLSVETLERGLLTPKSNVWSFGIVLLELLTG----RKNL 382
           + +   S                 +    +       ++WS G+      TG    R   
Sbjct: 168 DDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227

Query: 383 DSRHPKEERNLVKWSRP-------FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCL 435
             R  KE    +   +P         A++  +    D  +           +  +    L
Sbjct: 228 GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANIL 287

Query: 436 QKEPSERPTMRSIFEELDRQESRK 459
           + +  +       F E      R 
Sbjct: 288 EADQEKCWGFDQFFAETSDILHRM 311

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 55/334 (16%), Positives = 107/334 (32%), Gaps = 58/334 (17%)

Query: 149 SGPLPLPPTGTGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEA 208
           +GP  L         +F    V          R ++EG  + +Y A    D  + +++  
Sbjct: 2   AGPGSLGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQ---DVGSGREY-- 56

Query: 209 TVTRLN-PSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHA-----RDGSDQRMLIYERLF 261
            + RL     +  +  I +V  +  L  HPN+ +     +      D      L+   L 
Sbjct: 57  ALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELC 116

Query: 262 HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF 321
            G L   +       P+  +T +KI     + +  +H + P    + +    N+ +    
Sbjct: 117 KGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPII-HRDLKVENLLLSNQG 175

Query: 322 SAKLSGYG-CAGHIPETDISNSSVAAANLSVETLERGLL----------------TPKSN 364
           + KL  +G         D S S+   A +  E                         K +
Sbjct: 176 TIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQD 235

Query: 365 VWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAA 424
           +W+ G +L  L         +HP E+   ++              I    + G++ +   
Sbjct: 236 IWALGCILYLLCFR------QHPFEDGAKLR--------------I----VNGKYSIPPH 271

Query: 425 ----RTVADIALRCLQKEPSERPTMRSIFEELDR 454
                    +    LQ  P ER ++  +  +L  
Sbjct: 272 DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQE 305

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 51/243 (20%)

Query: 220 VKEFINDVNTLASLQHPNLCKLL--GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPP 277
              F  +    A+L HP +  +   G           ++ E +   +L  ++   ++GP 
Sbjct: 56  YLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV--HTEGP- 112

Query: 278 IDWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGC 330
           +     +++   A Q L F H+ G       P          ANI I    + K+  +G 
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKP----------ANIMISATNAVKVMDFGI 162

Query: 331 AGHIPETDIS---NSSV--AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSR 385
           A  I ++  S    ++V   A  LS E      +  +S+V+S G VL E+LTG       
Sbjct: 163 ARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE------ 216

Query: 386 HPKEERNLVKWSRPFLADDCRLSLIM-----DPQLKGRFPLKAARTVADIALRCLQKEPS 440
                        PF  D   +S+       DP          +  +  + L+ L K P 
Sbjct: 217 ------------PPFTGDS-PVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPE 263

Query: 441 ERP 443
            R 
Sbjct: 264 NRY 266

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 46/310 (14%), Positives = 91/310 (29%), Gaps = 44/310 (14%)

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEF---INDVNTLASLQHP 236
              + EG  + +Y A+ GD      K +  +    P++    EF      +  L      
Sbjct: 70  HHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--PWEFYIGTQLMERLKPSMQH 127

Query: 237 NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLI--YGRSDGPPIDWNTRVKIALCAAQGL 294
              K    H     +  +L+ E   +G+L   I  Y  +    +     +  A+     +
Sbjct: 128 MFMKFYSAH--LFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMI 185

Query: 295 TFLHEEG-------PFQAMY-NEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAA 346
             +H+         P   +  N F   + + D      L   G +  I        ++  
Sbjct: 186 EQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS--IDMKLFPKGTIFT 243

Query: 347 AN------LSVETLERGLLTPKSNVWSFGIVLLELLTGR--KNLDSRHPKEERNLVK--W 396
           A         VE L       + + +     +  +L G   K  +     +   L +   
Sbjct: 244 AKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLP 303

Query: 397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS-------IF 449
                 +   + L +                 D+  + L+K   +  T +        I 
Sbjct: 304 HLDMWNEFFHVMLNIPDCHH--------LPSLDLLRQKLKKVFQQHYTNKIRALRNRLIV 355

Query: 450 EELDRQESRK 459
             L+ + SRK
Sbjct: 356 LLLECKRSRK 365

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 38/249 (15%)

Query: 213 LNPSSQGVKEFINDVNTLASL-QHPNLCKLLG----FHARDGSDQRMLIYERLFHGSLDR 267
           ++ +    +E   ++N L     H N+    G     +     DQ  L+ E    GS+  
Sbjct: 57  MDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTD 116

Query: 268 LIYGRSDGPPIDWNTRVKIA-LC--AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK 324
           LI                IA +C    +GL+ LH+      ++ +    N+ + ++   K
Sbjct: 117 LIKNTKGNTL----KEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVK 169

Query: 325 LSGYGCAGHIPETDI-SNSSV------AAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
           L  +G +  +  T    N+ +      A   ++ +         KS++WS GI  +E+  
Sbjct: 170 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE 229

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
           G   L   HP     L+  +               P+LK +   K ++        CL K
Sbjct: 230 GAPPLCDMHPMRALFLIPRNPA-------------PRLKSK---KWSKKFQSFIESCLVK 273

Query: 438 EPSERPTMR 446
             S+RP   
Sbjct: 274 NHSQRPATE 282

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 38/215 (17%), Positives = 65/215 (30%), Gaps = 60/215 (27%)

Query: 262 HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTAN 314
             +L   +  R      +    + I +  A+ + FLH +G       P          +N
Sbjct: 145 KENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKP----------SN 194

Query: 315 IQIDKDFSAKLSGYGCA-GHIPETDISNSSVAAANLSVETLERGLLTP------------ 361
           I    D   K+  +G       + +           +  T + G  T             
Sbjct: 195 IFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVG--TKLYMSPEQIHGNN 252

Query: 362 ---KSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
              K +++S G++L ELL                       F     R+ +I D +   +
Sbjct: 253 YSHKVDIFSLGLILFELLY---------------------SFSTQMERVRIITDVR-NLK 290

Query: 419 FPLKAAR---TVADIALRCLQKEPSERPTMRSIFE 450
           FPL   +       +    L   P+ERP    I E
Sbjct: 291 FPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 36/236 (15%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLG-FHARDGSDQRM-LIYERLFHGSLDRLIYGRSDGPP 277
             +   +V   + L+HPN+ +L G FH       R+ LI E    G++ R +  +     
Sbjct: 53  EHQLRREVEIQSHLRHPNILRLYGYFH----DATRVYLILEYAPLGTVYREL--QKLSKF 106

Query: 278 IDWNTRVKIA-LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPE 336
            +  T   I  L  A  L++ H +     ++ +    N+ +      K++ +G + H P 
Sbjct: 107 DEQRTATYITELANA--LSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161

Query: 337 TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
           +  ++       L  E +E  +   K ++WS G++  E L G        P         
Sbjct: 162 SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG-------KP--------- 205

Query: 397 SRPFLADDCRLSLIMDPQLKG--RFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
             PF A+            +    FP        D+  R L+  PS+RP +R + E
Sbjct: 206 --PFEANT--YQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 65/383 (16%), Positives = 115/383 (30%), Gaps = 138/383 (36%)

Query: 176 NFFSD-RC--ISEGLSSVMYRASFGDDASTSKKFEATVTRL-----NPSSQGVKEFINDV 227
            F  +  C  + +   S++ +    D    SK   +   RL     +   + V++F+ +V
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 228 NTLASLQHPN---LCKLLGFHARDGS-DQRMLIYERLFHGSLDRLIYGRSDGPPI-DWN- 281
                L+  N   L   +    R  S   RM I +R      DRL    +D      +N 
Sbjct: 87  -----LR-INYKFLMSPIKTEQRQPSMMTRMYIEQR------DRL---YNDNQVFAKYNV 131

Query: 282 TR------VKIALCAAQ-------------GLTFL----------HEEGPFQAMY----N 308
           +R      ++ AL   +             G T++            +  F+  +    N
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 309 EFSTANI---------QIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV----ETLE 355
             S   +         QID +++++                      A L      +  E
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 356 RGLLTPKSNVWS------FGI---VLLELLTGRKN----LDSRHPKEERNLVKWSRPFLA 402
             LL    NV +      F +   +L  L T  K     L +        L   S     
Sbjct: 245 NCLLV-LLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHIS-LDHHSMTLTP 300

Query: 403 DDCR--LSLIMD-------PQLKGRFPLK----AAR--------------------TVAD 429
           D+ +  L   +D        ++    P +    A                      T+ +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 430 IALRCLQKEPSERPTMRSIFEEL 452
            +L  L  EP+E    R +F+ L
Sbjct: 361 SSLNVL--EPAE---YRKMFDRL 378

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 55/240 (22%)

Query: 232 SLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAA 291
           S +HPN+ +            + +  E L   +L   +  +           + +     
Sbjct: 74  SDEHPNVIRYFCTE--KDRQFQYIAIE-LCAATLQEYVEQKDFAHLGL--EPITLLQQTT 128

Query: 292 QGLTFLHEEG-------PFQAMYNEFSTANIQI-----DKDFSAKLSGYGCAGHIPETDI 339
            GL  LH          P           NI I          A +S +G    +     
Sbjct: 129 SGLAHLHSLNIVHRDLKP----------HNILISMPNAHGKIKAMISDFGLCKKLAVGRH 178

Query: 340 SNSSVAAAN-----LSVETLERGL---LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER 391
           S S  +        ++ E L        T   +++S G V   +++        H     
Sbjct: 179 SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISE-----GSH----- 228

Query: 392 NLVKWSRPFLADDCRLSLIM--DPQLKGRFPLKAARTVA-DIALRCLQKEPSERPTMRSI 448
                  PF     R + I+     L    P K    +A ++  + +  +P +RP+ + +
Sbjct: 229 -------PFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHV 281

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 62/257 (24%)

Query: 231 ASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCA 290
            S  HPN+ +       D      +  E L + +L  L+  ++         +    +  
Sbjct: 64  ESDDHPNVIRYYCSETTD--RFLYIALE-LCNLNLQDLVESKNVSDENLKLQKEYNPISL 120

Query: 291 ----AQGLTFLHEEG-------P----FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
               A G+  LH          P      +  + F+       ++    +S +G    + 
Sbjct: 121 LRQIASGVAHLHSLKIIHRDLKPQNILV-STSSRFTADQQTGAENLRILISDFGLCKKLD 179

Query: 336 ETDISNSS-----------VAAANL--SVETLERGLLTPKSNVWSFGIVLLELLTGRKNL 382
               S  +            A   L  S     +  LT   +++S G V   +L+  K  
Sbjct: 180 SGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGK-- 237

Query: 383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIAL---------R 433
                           PF     R S I    ++G F L   + + D +L         +
Sbjct: 238 ---------------HPFGDKYSRESNI----IRGIFSLDEMKCLHDRSLIAEATDLISQ 278

Query: 434 CLQKEPSERPTMRSIFE 450
            +  +P +RPT   +  
Sbjct: 279 MIDHDPLKRPTAMKVLR 295

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 51/247 (20%), Positives = 87/247 (35%), Gaps = 57/247 (23%)

Query: 215 PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD 274
            S++  ++ I +V  L  L+HPN  +  G + R+      L+ E     + D  +     
Sbjct: 93  QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE--HTAWLVMEYCLGSASD--LLEVHK 148

Query: 275 GPPIDWNTRVKIA-LC--AAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
            P       V+IA +   A QGL +LH       ++ +    NI + +    KL  +G A
Sbjct: 149 KPL----QEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSA 201

Query: 332 GHI--------------PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT 377
             +              PE              +  ++ G    K +VWS GI  +EL  
Sbjct: 202 SIMAPANSFVGTPYWMAPEV-------------ILAMDEGQYDGKVDVWSLGITCIELAE 248

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK 437
            +  L + +       +  +               P L+       +    +    CLQK
Sbjct: 249 RKPPLFNMNAMSALYHIAQNES-------------PALQSG---HWSEYFRNFVDSCLQK 292

Query: 438 EPSERPT 444
            P +RPT
Sbjct: 293 IPQDRPT 299

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 78/268 (29%)

Query: 220 VKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHG-SLDRLIYGRSDGPPI 278
           ++E ++    L+ +  P + ++L            L+      G SL  +     D  P 
Sbjct: 75  LQETLSRTLRLSRIDKPGVARVLDVVHTRA---GGLVVAEWIRGGSLQEVA----DTSP- 126

Query: 279 DWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
                ++     A      H  G       P          + +++  D    L+     
Sbjct: 127 SPVGAIRAMQSLAAAADAAHRAGVALSIDHP----------SRVRVSIDGDVVLAYPATM 176

Query: 332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER 391
                                        P+ ++   G  L  LL  R            
Sbjct: 177 PD-------------------------ANPQDDIRGIGASLYALLVNR------------ 199

Query: 392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADI-------ALRCLQKEPSERP- 443
                  P      R  L    +     P++ A    DI       A R +Q +   R  
Sbjct: 200 ------WPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSA 253

Query: 444 -TMRSIFEELDRQESRKSSSSTVRRASV 470
            T+ ++ ++      R      +  A V
Sbjct: 254 STLLNLMQQATAVADRTEVLGPIDEAPV 281

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 32/94 (34%)

Query: 361 PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK----WSRPFLADDCRLSLIMDPQLK 416
             + VWS GI+L +++ G        P E    +     + R  ++ +C+  LI      
Sbjct: 228 RSAAVWSLGILLYDMVCG------DIPFEHDEEIIRGQVFFRQRVSSECQ-HLIR----- 275

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                            CL   PS+RPT   I  
Sbjct: 276 ----------------WCLALRPSDRPTFEEIQN 293

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 32/227 (14%)

Query: 227 VNTLASLQHPNLCKLLG-FHARDGSDQRM-LIYERLFHGSLDRLIYGRSDGPPIDWNTRV 284
           +   + L+HPN+ ++   FH      +R+ L+ E    G L + +  +  G   +  +  
Sbjct: 65  IEIQSHLRHPNILRMYNYFH----DRKRIYLMLEFAPRGELYKEL--QKHGRFDEQRSAT 118

Query: 285 KIA-LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSS 343
            +  L  A  L + HE      ++ +    N+ +      K++ +G + H P        
Sbjct: 119 FMEELADA--LHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMC 173

Query: 344 VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD 403
                L  E +E      K ++W  G++  E L G        P +  +  +  R  +  
Sbjct: 174 GTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMP------PFDSPSHTETHRRIVNV 227

Query: 404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           D +    +    K            D+  + L+  P +R  ++ + E
Sbjct: 228 DLKFPPFLSDGSK------------DLISKLLRYHPPQRLPLKGVME 262

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 65/255 (25%)

Query: 215 PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM--LIYERLFHGSL-DRLIYG 271
                 +  + +V  L  L HPN+ KL  F      D+    L+ E    G L D +I  
Sbjct: 65  KQKTDKESLLREVQLLKQLDHPNIMKLYEFF----EDKGYFYLVGEVYTGGELFDEIISR 120

Query: 272 RSDGPPIDWNTRVKIALCAAQ---GLTFLHEEG-------PFQAMYNE---FSTANIQID 318
           +         + V  A    Q   G+T++H+         P      E     +      
Sbjct: 121 KR-------FSEVDAARIIRQVLSGITYMHKNKIVHRDLKP------ENLLLESK----S 163

Query: 319 KDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLT 377
           KD + ++  +G + H   +      +  A  ++ E L       K +VWS G++L  LL+
Sbjct: 164 KDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTY-DEKCDVWSTGVILYILLS 222

Query: 378 GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR--FPLKAARTVADIA---- 431
           G                    PF   +     I+    KG+  F L   + V++ A    
Sbjct: 223 GC------------------PPFNGAN--EYDILKKVEKGKYTFELPQWKKVSESAKDLI 262

Query: 432 LRCLQKEPSERPTMR 446
            + L   PS R + R
Sbjct: 263 RKMLTYVPSMRISAR 277

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 50/276 (18%), Positives = 79/276 (28%), Gaps = 70/276 (25%)

Query: 227 VNTLASLQHPNLCKLL----GFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNT 282
           +  +  L HPN+        G      +D  +L  E    G L + +    +   +    
Sbjct: 63  IQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGP 122

Query: 283 RVKIALCAAQGLTFLHEEG-------PFQAMYNEFSTANIQIDKDFSA---KLSGYGCAG 332
              +    +  L +LHE         P           NI +         K+   G A 
Sbjct: 123 IRTLLSDISSALRYLHENRIIHRDLKP----------ENIVLQPGPQRLIHKIIDLGYAK 172

Query: 333 HIPETDISNSSV-----AAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR-------- 379
            + + ++    V      A     E LE+   T   + WSFG +  E +TG         
Sbjct: 173 ELDQGELCTEFVGTLQYLAP----ELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ 228

Query: 380 -----------KNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVA 428
                       N       +    VK+S   L     LS I+  +L+            
Sbjct: 229 PVQWHGKVREKSNEHIVVYDDLTGAVKFSS-VLPTPNHLSGILAGKLE---RWLQCM--- 281

Query: 429 DIALRCLQKEPSERPTMRSI-----FEELDRQESRK 459
                 L     +R T         F+ LD   S K
Sbjct: 282 ------LMWHQRQRGTDPQNPNVGCFQALDSILSLK 311

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 54/262 (20%), Positives = 91/262 (34%), Gaps = 67/262 (25%)

Query: 209 TVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM--LIYERLFHGSL- 265
            + + + S+    + + +V  L  L HPN+ KL  F      D+R   L+ E    G L 
Sbjct: 69  IIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFF----EDKRNYYLVMECYKGGELF 124

Query: 266 DRLI----YGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG-------PFQAMYNE---FS 311
           D +I    +   D   I     +K  L     +T+LH+         P      E     
Sbjct: 125 DEIIHRMKFNEVDAAVI-----IKQVLSG---VTYLHKHNIVHRDLKP------ENLLLE 170

Query: 312 TANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGI 370
           +     +KD   K+  +G +            +  A  ++ E L +     K +VWS G+
Sbjct: 171 SK----EKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRKKY-DEKCDVWSIGV 225

Query: 371 VLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR--FPLKAARTVA 428
           +L  LL G                    PF         I+    KG+  F     + V+
Sbjct: 226 ILFILLAGY------------------PPFGGQT--DQEILRKVEKGKYTFDSPEWKNVS 265

Query: 429 DIA----LRCLQKEPSERPTMR 446
           + A     + LQ +   R + +
Sbjct: 266 EGAKDLIKQMLQFDSQRRISAQ 287

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 32/94 (34%)

Query: 361 PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK----WSRPFLADDCRLSLIMDPQLK 416
             + VWS GI+L +++ G        P E    +          ++ DC  +LI      
Sbjct: 218 LPATVWSLGILLYDMVCG------DIPFERDQEILEAELHFPAHVSPDCC-ALIR----- 265

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                           RCL  +PS RP++  I  
Sbjct: 266 ----------------RCLAPKPSSRPSLEEILL 283

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 67/262 (25%)

Query: 209 TVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM--LIYERLFHGSL- 265
                    +  +E  N+++ L SL HPN+ KL         D++   L+ E    G L 
Sbjct: 79  YSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVF----EDKKYFYLVTEFYEGGELF 134

Query: 266 DRLI-YGRSDGPPIDWNTRVKIALCAAQ---GLTFLHEEG-------PFQAMYNE---FS 311
           +++I   +              A    Q   G+ +LH+         P      E     
Sbjct: 135 EQIINRHK--------FDECDAANIMKQILSGICYLHKHNIVHRDIKP------ENILLE 180

Query: 312 TANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLLTPKSNVWSFGI 370
                 +   + K+  +G +    +       +  A  ++ E L++     K +VWS G+
Sbjct: 181 NK----NSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKY-NEKCDVWSCGV 235

Query: 371 VLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR--FPLKAARTVA 428
           ++  LL G                    PF   +     I+    KG+  F     + ++
Sbjct: 236 IMYILLCG------------------YPPFGGQN--DQDIIKKVEKGKYYFDFNDWKNIS 275

Query: 429 DIA----LRCLQKEPSERPTMR 446
           D A       L  + ++R T  
Sbjct: 276 DEAKELIKLMLTYDYNKRCTAE 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.96
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.94
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.89
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.78
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.62
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.3
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.13
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.1
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.93
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.62
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.39
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.32
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.21
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.19
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.14
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.85
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.82
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.52
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.27
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.25
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.23
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.12
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.12
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.12
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.83
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.8
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.69
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.49
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.27
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	94.36
3mes_A	424	Choline kinase; malaria, structural genomics, stru	94.14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	93.38
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.46
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	88.9
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	88.06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	87.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	86.79
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	86.0
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	83.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	81.86
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	81.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	80.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	80.29

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.8e-56  Score=437.74  Aligned_cols=259  Identities=20%  Similarity=0.306  Sum_probs=211.0

Q ss_pred             ccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +++..+.||+|+||+||+|.+.+.  ....+.+|+|+..........++|.+|+.+|++++|||||+++|+|.++  +.+
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~--~~~  104 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD--QPL  104 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SSC
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEEC--CEE
Confidence            455668999999999999998542  2334555555554444445568899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      +||||||++|+|.++|..+..             ...++|..++.|+.||+.||+|||+++   ||||||||+||||+++
T Consensus       105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~  181 (308)
T 4gt4_A          105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDK  181 (308)
T ss_dssp             EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGG
T ss_pred             EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEECCC
Confidence            999999999999999965321             246899999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          321 FSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      +.+||+|||+++.....+    .....+|+.|||||++.++.|+.++|||||||++|||+| |+.||.+....+....+.
T Consensus       182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~  261 (308)
T 4gt4_A          182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIR  261 (308)
T ss_dssp             GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHH
T ss_pred             CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            999999999998764332    234578999999999999999999999999999999998 899998876654433322


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .       +.          ....+..++.++.+|+.+||+.||++||||.||++.|+.+.
T Consensus       262 ~-------~~----------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          262 N-------RQ----------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             T-------TC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             c-------CC----------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence            1       10          11224566788999999999999999999999999998764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.2e-56  Score=437.25  Aligned_cols=262  Identities=21%  Similarity=0.360  Sum_probs=214.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||+|++.+..  .....+|+|+... ......++|.+|+++|++++|||||+++|+|.+.  +.
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~--~~   89 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKD-ASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG--DP   89 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECS-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--SS
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCC-CChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC--CE
Confidence            57888899999999999999976432  2344555555432 2445567899999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCC----------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRS----------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS  322 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~  322 (473)
                      +|||||||++|+|.++|+...          ....++|..++.|+.||+.||+|||+++   ||||||||+||||+.++.
T Consensus        90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~  166 (299)
T 4asz_A           90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLL  166 (299)
T ss_dssp             EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCc
Confidence            999999999999999996532          2457999999999999999999999999   999999999999999999


Q ss_pred             EEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhc
Q 011995          323 AKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~  397 (473)
                      +||+|||+++.......    ....+|+.|||||++.+..|+.++|||||||++|||+| |+.||.+....+....+...
T Consensus       167 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~  246 (299)
T 4asz_A          167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG  246 (299)
T ss_dssp             EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHT
T ss_pred             EEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC
Confidence            99999999987644332    23457899999999999999999999999999999999 89999887665543333211


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      .                 ....|..++.++.+|+.+||+.||++|||+.+|++.|+++.+..
T Consensus       247 ~-----------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~  291 (299)
T 4asz_A          247 R-----------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS  291 (299)
T ss_dssp             C-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             C-----------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            0                 01224556788999999999999999999999999999887543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=7.5e-56  Score=437.41  Aligned_cols=261  Identities=20%  Similarity=0.348  Sum_probs=209.0

Q ss_pred             cccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|...+.||+|+||.||+|++.+.  ......+|+|+... ......++|.+|+++|++++|||||+++|+|.+.  +.
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~--~~  117 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKE-ASESARQDFQREAELLTMLQHQHIVRFFGVCTEG--RP  117 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESC-CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--SS
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECc-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--CE
Confidence            5677789999999999999998642  23445556665542 2445567899999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSD------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      +|||||||++|+|.++|+....            ..+++|..++.|+.||+.||+|||+++   ||||||||+||||+.+
T Consensus       118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~  194 (329)
T 4aoj_A          118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQG  194 (329)
T ss_dssp             EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETT
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCC
Confidence            9999999999999999975421            246999999999999999999999998   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhh
Q 011995          321 FSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~  395 (473)
                      +.+||+|||+++.......    ....+|+.|||||++.+..|+.++|||||||++|||+| |+.||.+....+....+.
T Consensus       195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~  274 (329)
T 4aoj_A          195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCIT  274 (329)
T ss_dssp             TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHH
T ss_pred             CcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            9999999999987644322    34568999999999999999999999999999999999 899998876655433332


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ...                 +...|..++.++.+|+.+||+.||++||||.||++.|+.+.+.
T Consensus       275 ~g~-----------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          275 QGR-----------------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HTC-----------------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             cCC-----------------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            110                 1122455678899999999999999999999999999988654

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-56  Score=433.41  Aligned_cols=258  Identities=18%  Similarity=0.340  Sum_probs=205.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|...+.||+|+||+||+|++.++      +++|+++.. ......+.|.+|+.+|++++|||||+++|++..   +.+
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~~------vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~---~~~  106 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHGD------VAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK---DNL  106 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSSE------EEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---SSC
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCc------EEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC---CeE
Confidence            4567779999999999999986542      355555433 344556789999999999999999999999854   568


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |||||||++|+|.++|+..  ...++|..+..|+.||+.||+|||+++   ||||||||+||||++++.+||+|||+|+.
T Consensus       107 ~iVmEy~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~  181 (307)
T 3omv_A          107 AIVTQWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATV  181 (307)
T ss_dssp             EEEEECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC
T ss_pred             EEEEEcCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCcee
Confidence            9999999999999999643  356999999999999999999999998   99999999999999999999999999987


Q ss_pred             cCCC----CccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          334 IPET----DISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       334 ~~~~----~~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ....    .....+||+.|||||++.+   +.|+.++|||||||++|||+||+.||.+.............         
T Consensus       182 ~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~---------  252 (307)
T 3omv_A          182 KSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR---------  252 (307)
T ss_dssp             ------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHT---------
T ss_pred             cccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhc---------
Confidence            6432    2345589999999999964   35899999999999999999999999876544332211100         


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                        ....+.+ ...+..++.++.+|+.+||+.||++||||.||++.|+.+...
T Consensus       253 --~~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          253 --GYASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             --TCCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             --CCCCCCc-ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence              0011111 123456678899999999999999999999999999988643

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.2e-55  Score=436.25  Aligned_cols=249  Identities=19%  Similarity=0.303  Sum_probs=210.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ..|+..+.||+|+||+||+|+...   +++.+|+|++.... ....+.+.+|+.+|+.++|||||++++++.++  +.+|
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~---tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~--~~~~  147 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRS---SGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVG--DELW  147 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEGGG-CSSGGGGHHHHHHHHHCCCTTBCCEEEEEEET--TEEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECC---CCCEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--CEEE
Confidence            458889999999999999999544   45667777776543 23456789999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||||||++|+|.+++..    ..+++..+..|+.||+.||+|||+++   ||||||||+||||+.+|.+||+|||+|+.+
T Consensus       148 ivmEy~~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~  220 (346)
T 4fih_A          148 VVMEFLEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQV  220 (346)
T ss_dssp             EEECCCTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEeCCCCCcHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceec
Confidence            99999999999999954    35999999999999999999999999   999999999999999999999999999877


Q ss_pred             CCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...  .....+||+.|||||++.+..|+.++|||||||++|||++|++||.+....+....+....+             
T Consensus       221 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-------------  287 (346)
T 4fih_A          221 SKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------  287 (346)
T ss_dssp             CSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSC-------------
T ss_pred             CCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCC-------------
Confidence            543  34567899999999999999999999999999999999999999988776555443322110             


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +.  ...+..++.++.+||.+||++||++|||+.|+++.
T Consensus       288 ~~--~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          288 PR--LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             CC--CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CC--CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            01  11234567899999999999999999999999874

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.4e-55  Score=442.53  Aligned_cols=249  Identities=19%  Similarity=0.315  Sum_probs=211.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +.|+..+.||+|+||.||+|+...   +++.+|+|++.... ....+.+.+|+.+|+.++|||||++++++.++  +.+|
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~---tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~--~~~~  224 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRS---SGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVG--DELW  224 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEESTT-CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEET--TEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECC---CCCEEEEEEEeccc-hhHHHHHHHHHHHHHhCCCCCCCceEEEEEEC--CEEE
Confidence            459999999999999999999544   45667777776543 33456789999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||||||++|+|.+++..    ..+++..+..|+.||+.||+|||+++   ||||||||+||||+.+|.+||+|||+|+.+
T Consensus       225 iVmEy~~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~  297 (423)
T 4fie_A          225 VVMEFLEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQV  297 (423)
T ss_dssp             EEEECCTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEEC
T ss_pred             EEEeCCCCCcHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceEC
Confidence            99999999999999953    35999999999999999999999999   999999999999999999999999999876


Q ss_pred             CCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...  .....+||+.|||||++.+..|+.++|||||||++|||++|++||.+.........+....+             
T Consensus       298 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-------------  364 (423)
T 4fie_A          298 SKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP-------------  364 (423)
T ss_dssp             CSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC-------------
T ss_pred             CCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCC-------------
Confidence            543  34567899999999999999999999999999999999999999988776655444322111             


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +.+  ..+..++.++.+||.+||++||++|||+.|+|+.
T Consensus       365 ~~~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          365 PRL--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             CCC--SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCC--cccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            111  1133567889999999999999999999999874

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.6e-55  Score=436.00  Aligned_cols=252  Identities=19%  Similarity=0.259  Sum_probs=206.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|++.+.||+|+||+||+|+...   +++.+|+|++.... .....+.+.+|+.+|++++|||||++++++.++  +.
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~--~~   97 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTE---DGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEEN--GS   97 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETT---TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TE
T ss_pred             ccceEEeEEEecCCCeEEEEEEECC---CCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC--CE
Confidence            3689999999999999999998543   45677788776543 344567899999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|||||||++|+|.++|..+ ....+++..++.|+.||+.||+|||+++   ||||||||+||||+.+|.+||+|||+|+
T Consensus        98 ~yiVmEy~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~  173 (350)
T 4b9d_A           98 LYIVMDYCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIAR  173 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEES
T ss_pred             EEEEEeCCCCCcHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccce
Confidence            99999999999999999654 3456899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .+....  ....+||+.|||||++.+..|+.++|||||||++|||+||++||.+.+..+....+....            
T Consensus       174 ~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~------------  241 (350)
T 4b9d_A          174 VLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGS------------  241 (350)
T ss_dssp             CCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC------------
T ss_pred             eecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCC------------
Confidence            775432  234579999999999999999999999999999999999999998876655443332110            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          . ...+..++.++.+||.+||++||++|||+.|+++.
T Consensus       242 ----~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          242 ----F-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             ----C-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ----C-CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                0 01234566889999999999999999999999863

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=4.1e-55  Score=435.70  Aligned_cols=266  Identities=20%  Similarity=0.301  Sum_probs=217.7

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC-CCcccceeeeecC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH-PNLCKLLGFHARD  248 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-pnIv~l~g~~~~~  248 (473)
                      .-.++|+..+.||+|+||.||+|.+.+.  ..+.+.+++|+..........+.|.+|+++|.++.| ||||+++|+|...
T Consensus        61 i~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~  140 (353)
T 4ase_A           61 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP  140 (353)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred             ecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEec
Confidence            3457899999999999999999987543  345667777766554455556789999999999965 8999999998764


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                      + +.+|||||||++|+|.++|+...             ....++|..+..++.||+.||+|||+++   ||||||||+||
T Consensus       141 ~-~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~NI  216 (353)
T 4ase_A          141 G-GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNI  216 (353)
T ss_dssp             T-SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGE
T ss_pred             C-CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccCccce
Confidence            3 57899999999999999996532             1345899999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      ||+.++.+||+|||+|+.+.....    ....+|+.|||||++.+..|+.++|||||||++|||+| |+.||.+....+.
T Consensus       217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~  296 (353)
T 4ase_A          217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE  296 (353)
T ss_dssp             EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH
T ss_pred             eeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH
Confidence            999999999999999987654322    34467899999999999999999999999999999998 9999987653332


Q ss_pred             H-hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          391 R-NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       391 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      . ..+.       .+          .+...|..++.++.+|+.+||+.||++|||+.||++.|+++.+.
T Consensus       297 ~~~~i~-------~g----------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          297 FCRRLK-------EG----------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             HHHHHH-------HT----------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------cC----------CCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence            1 1111       11          11123455678899999999999999999999999999998654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=8e-56  Score=431.21  Aligned_cols=246  Identities=17%  Similarity=0.212  Sum_probs=209.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||+||+|+...   +++.+|+|++....  .....+.+.+|+++|++++|||||++++++.++  +.
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~---~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~  106 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELA---TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD--EK  106 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS--SE
T ss_pred             cccEEEEEEecccCeEEEEEEECC---CCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC--CE
Confidence            579999999999999999998544   45677777765321  233457789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +|||||||++|+|.++|...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+|+
T Consensus       107 ~yivmEy~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~  180 (311)
T 4aw0_A          107 LYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAK  180 (311)
T ss_dssp             EEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCce
Confidence            99999999999999999543   46999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCC----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          333 HIPET----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       333 ~~~~~----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .+...    ...+.+||+.|||||++.+..|+.++|||||||++|||++|++||.+.+..+....+....          
T Consensus       181 ~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~----------  250 (311)
T 4aw0_A          181 VLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLE----------  250 (311)
T ss_dssp             ECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC----------
T ss_pred             ecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCC----------
Confidence            76432    2345689999999999999999999999999999999999999998876655443332111          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIF  449 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil  449 (473)
                              ..++..++.++.+||.+||++||++|||++|++
T Consensus       251 --------~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          251 --------YDFPEKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             --------CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             --------CCCCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence                    123445678899999999999999999999874

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=4e-55  Score=431.17  Aligned_cols=255  Identities=18%  Similarity=0.175  Sum_probs=208.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+.|...++||+|+||.||+|+...   +++.+|+|+++..      ..+.+|+.+|+.++|||||++++++.++  +.+
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~---~g~~vAiK~i~~~------~~~~~E~~il~~l~HpnIV~l~~~~~~~--~~~  125 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQ---TGFQCAVKKVRLE------VFRVEELVACAGLSSPRIVPLYGAVREG--PWV  125 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEETT------TCCTHHHHTTTTCCCTTBCCEEEEEEET--TEE
T ss_pred             hhheEeCcEeccCCCeEEEEEEECC---CCCEEEEEEECHH------HhHHHHHHHHHhCCCCCCCcEEEEEEEC--CEE
Confidence            3578888999999999999999544   4566777777643      2235799999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCCCc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGCAG  332 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGla~  332 (473)
                      |||||||+||+|.++|...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.+| .+||+|||+|+
T Consensus       126 ~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~  199 (336)
T 4g3f_A          126 NIFMELLEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHAL  199 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCE
T ss_pred             EEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCe
Confidence            9999999999999999643   46999999999999999999999999   99999999999999987 59999999998


Q ss_pred             ccCCCC-------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          333 HIPETD-------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       333 ~~~~~~-------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      .+....       ....+||+.|||||++.+..|+.++|||||||++|||+||++||.+.........+....+      
T Consensus       200 ~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~------  273 (336)
T 4g3f_A          200 CLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPP------  273 (336)
T ss_dssp             EC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCC------
T ss_pred             EccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCC------
Confidence            764332       1234799999999999999999999999999999999999999987654433222211110      


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                               ....++..++.++.+||.+||++||.+|||+.||++.|.+......
T Consensus       274 ---------~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~  319 (336)
T 4g3f_A          274 ---------PIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG  319 (336)
T ss_dssp             ---------GGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             ---------CchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhh
Confidence                     0012345667899999999999999999999999999987765443

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.4e-55  Score=421.98  Aligned_cols=249  Identities=18%  Similarity=0.227  Sum_probs=200.0

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecC--CCCceE
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARD--GSDQRM  254 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~--~~~~~~  254 (473)
                      ...+.||+|+||+||+|.+...   ...+++|+..... .....+.|.+|+++|++++|||||++++++.+.  +...+|
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~---~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~  105 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTET---TVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCC---CeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEE
Confidence            5567899999999999996543   3455666554332 344567799999999999999999999998652  235689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla~~  333 (473)
                      ||||||++|+|.++|..   ...+++..+..|+.||+.||+|||++++ +||||||||+||||+ .++.+||+|||+|+.
T Consensus       106 lvmEy~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~ylH~~~~-~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          106 LVTELMTSGTLKTYLKR---FKVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHTSSS-CCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEeCCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCCC-CEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            99999999999999964   3469999999999999999999999873 499999999999997 479999999999987


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhcccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .........+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+....... ..+...               
T Consensus       182 ~~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~---------------  245 (290)
T 3fpq_A          182 KRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG---------------  245 (290)
T ss_dssp             CCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT---------------
T ss_pred             CCCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcC---------------
Confidence            66655667789999999998865 6999999999999999999999999765443321 111100               


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .....++...+.++.+||.+||++||++|||+.|+++
T Consensus       246 -~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          246 -VKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             -CCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -CCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             0001112334568999999999999999999999986

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=8.8e-54  Score=411.03  Aligned_cols=247  Identities=17%  Similarity=0.256  Sum_probs=193.8

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||+||+|..   ..+++.+|+|+.....  .......+.+|+++|+.++|||||++++++.++  +.
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~---~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~--~~   87 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYH---TTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSK--DE   87 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEEC---TTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECS--SE
T ss_pred             eCeEEEEEEecCcCeEEEEEEE---CCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC--CE
Confidence            6899999999999999999984   3455677777765432  334456799999999999999999999999876  88


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +||||||+ +|+|.+++..+   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+|+
T Consensus        88 ~~ivmEy~-~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~  160 (275)
T 3hyh_A           88 IIMVIEYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSN  160 (275)
T ss_dssp             EEEEEECC-CEEHHHHHHHS---CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC-
T ss_pred             EEEEEeCC-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCe
Confidence            99999999 68999998643   46999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC-ccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPETD-ISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~~-~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ...... ..+.+||+.|||||++.+..+ +.++|||||||++|||+||+.||.+.........+....            
T Consensus       161 ~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~------------  228 (275)
T 3hyh_A          161 IMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV------------  228 (275)
T ss_dssp             --------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC------------
T ss_pred             ecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC------------
Confidence            765443 345689999999999988876 589999999999999999999998766554333332111            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            ..++..++.++.+|+.+||+.||++|||++|+++.
T Consensus       229 ------~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          229 ------YTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             ------CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             ------CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence                  11244566889999999999999999999999873

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.8e-54  Score=421.46  Aligned_cols=250  Identities=17%  Similarity=0.220  Sum_probs=202.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|++.+.||+|+||+||+|+...+..+.+.+|+|+..... .......+.+|+++|++++|||||++++++.++  +.+
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTE--GKL  101 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEET--TEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC--CEE
Confidence            57999999999999999999875555556677777765332 222345688999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |||||||+||+|.++|...   ..+++..+..++.||+.||+|||+++   ||||||||+|||++.+|.+||+|||+|+.
T Consensus       102 ~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             EEEECCCTTCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEeccccccee
Confidence            9999999999999999643   46999999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ....  ...+.+||+.|||||++.+..|+.++|||||||++|||+||+.||.+.+..+....+....             
T Consensus       176 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~-------------  242 (304)
T 3ubd_A          176 SIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAK-------------  242 (304)
T ss_dssp             -----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-------------
T ss_pred             ccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCC-------------
Confidence            5332  3456689999999999999999999999999999999999999999877655444332111             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTM-----RSIFE  450 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~  450 (473)
                           ..++..++.++.+||.+||++||++|||+     +|+++
T Consensus       243 -----~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          243 -----LGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             -----CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred             -----CCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence                 12344567889999999999999999984     56664

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.6e-53  Score=414.62  Aligned_cols=273  Identities=16%  Similarity=0.207  Sum_probs=196.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--Cc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--DQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--~~  252 (473)
                      .+|...+.||+|+||+||+|++.+     ..+|+|+.  .........+..|+..+.+++|||||+++|+|.+++.  ..
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~g-----~~VAvK~l--~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~   75 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWRG-----EEVAVKIF--SSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ   75 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETT-----EEEEEEEE--CGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECC-----EEEEEEEE--CccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceE
Confidence            467788999999999999999753     34455544  3222222233456666678899999999999986532  25


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-----CCceeecCCCCCceeeCCCCcEEEec
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG-----PFQAMYNEFSTANIQIDKDFSAKLSG  327 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~-----~~~ivHrDlkp~NILl~~~~~vkl~D  327 (473)
                      +|||||||++|+|.++|+..    .++|..+.+++.|++.||+|||+++     .++||||||||+||||+.++.+||+|
T Consensus        76 ~~lV~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~D  151 (303)
T 3hmm_A           76 LWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  151 (303)
T ss_dssp             EEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred             EEEEecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEe
Confidence            79999999999999999643    5999999999999999999999871     22399999999999999999999999


Q ss_pred             cCCCcccCCCC------ccCcccccccCChhhhhcC------CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          328 YGCAGHIPETD------ISNSSVAAANLSVETLERG------LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       328 FGla~~~~~~~------~~~~~~t~~y~aPE~~~~~------~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      ||+++......      .....||+.|||||++.+.      .++.++|||||||++|||+||.+||.......... ..
T Consensus       152 FGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~-~~  230 (303)
T 3hmm_A          152 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY-YD  230 (303)
T ss_dssp             CTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTT-TT
T ss_pred             CCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccc-hh
Confidence            99998764332      1234789999999999764      36779999999999999999988775432211000 00


Q ss_pred             hc--ccccccc--cccccccccccCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          396 WS--RPFLADD--CRLSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       396 ~~--~~~~~~~--~~~~~~~~~~l~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      +.  .+.....  .......++.+...+ ...+...+.+|+.+||+.||++||||.||++.|+++.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~  299 (303)
T 3hmm_A          231 LVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             TSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             cccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence            00  0000000  000011122222111 2356778999999999999999999999999999987654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.9e-52  Score=405.16  Aligned_cols=252  Identities=18%  Similarity=0.267  Sum_probs=192.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS---  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~---  250 (473)
                      .++|+..+.||+|+||+||+|+...   +++.+|+|++.........+.+.+|+.+|++++|||||++++++.+.+.   
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~---~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~   80 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKV---DDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEK   80 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETT---TCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----
T ss_pred             chhCEEeeEEecCCCeEEEEEEECC---CCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccc
Confidence            3579999999999999999998543   3466778877766555566789999999999999999999999875431   


Q ss_pred             -------CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcE
Q 011995          251 -------DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       251 -------~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                             ..+|||||||++|+|.+++.........++..++.|+.||+.||+|||+++   ||||||||+||||+.++.+
T Consensus        81 ~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~v  157 (299)
T 4g31_A           81 LQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVV  157 (299)
T ss_dssp             ------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCE
T ss_pred             ccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcE
Confidence                   247999999999999999976544445677888999999999999999999   9999999999999999999


Q ss_pred             EEeccCCCcccCCCC--------------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH
Q 011995          324 KLSGYGCAGHIPETD--------------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE  389 (473)
Q Consensus       324 kl~DFGla~~~~~~~--------------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~  389 (473)
                      ||+|||+|+.+....              ....+||+.|||||++.+..|+.++|||||||++|||++   ||....  +
T Consensus       158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~--~  232 (299)
T 4g31_A          158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM--E  232 (299)
T ss_dssp             EECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH--H
T ss_pred             EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc--H
Confidence            999999998764332              123479999999999999999999999999999999996   775421  1


Q ss_pred             HHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          390 ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ....+...             .+.... ......++.+.+||.+||+.||.+|||+.|+++
T Consensus       233 ~~~~~~~~-------------~~~~~p-~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          233 RVRTLTDV-------------RNLKFP-PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHHHHHH-------------HTTCCC-HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHH-------------hcCCCC-CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            11111100             000000 012234466789999999999999999999987

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-50  Score=406.70  Aligned_cols=268  Identities=14%  Similarity=0.182  Sum_probs=206.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecC----
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARD----  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~----  248 (473)
                      .++|++.+.||+|+||+||+|+...   +++.+|+|++.... .....+.+.+|+++|+.++|||||++++++...    
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~---t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~  129 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRL---TGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYG  129 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTT
T ss_pred             CCCeEEEEEEecccCeEEEEEEECC---CCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccc
Confidence            3579999999999999999999543   45667777765433 233456789999999999999999999987642    


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ..+.+|||||||+ |+|.+++..   ...+++..+..++.||+.||.|||+++   ||||||||+|||++.++.+||+||
T Consensus       130 ~~~~~~ivmE~~~-g~L~~~i~~---~~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DF  202 (398)
T 4b99_A          130 EFKSVYVVLDLME-SDLHQIIHS---SQPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDF  202 (398)
T ss_dssp             TCCCEEEEEECCS-EEHHHHHTS---SSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCC
T ss_pred             cCCEEEEEEeCCC-CCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeec
Confidence            2367899999995 689999953   457999999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCC------CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          329 GCAGHIPET------DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       329 Gla~~~~~~------~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      |+|+.+...      ...+.+||+.|||||++.+. .++.++||||+||++|||++|++||.+.+..+....+.......
T Consensus       203 Gla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p  282 (398)
T 4b99_A          203 GMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTP  282 (398)
T ss_dssp             TTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCC
T ss_pred             ceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCC
Confidence            999876322      23456899999999998875 46999999999999999999999999887766655443211100


Q ss_pred             cccc-------ccccc---cccccCCC---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDC-------RLSLI---MDPQLKGR---FPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~-------~~~~~---~~~~l~~~---~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ....       .....   ..+.....   .....+.++.+||.+||++||.+|||+.|+|+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          283 SPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             CGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             ChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0000       00000   00000000   012346789999999999999999999999873

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=6.4e-49  Score=393.15  Aligned_cols=265  Identities=16%  Similarity=0.172  Sum_probs=199.1

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      ...+.|++.+.||+|+||+||+|+...+..+.+.+|+|+....   ....++.+|+++|..+ +|||||++++++.+.  
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~---~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~--   92 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT---SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKN--   92 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT---SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEET--
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc---cCHHHHHHHHHHHHHhcCCCCCceEEEEEEEC--
Confidence            4567899999999999999999986544445667777655432   2345688999999998 699999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEeccC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYG  329 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~DFG  329 (473)
                      +.+|||||||++|+|.+++.      .+++..+..++.||+.||+|||+++   ||||||||+|||++.+ +.+||+|||
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFG  163 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFG  163 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             CEEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCC
Confidence            89999999999999999982      3899999999999999999999999   9999999999999877 899999999


Q ss_pred             CCcccCCC------------------------------CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcC
Q 011995          330 CAGHIPET------------------------------DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTG  378 (473)
Q Consensus       330 la~~~~~~------------------------------~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG  378 (473)
                      +|+.....                              .....+||++|||||++.+. .|+.++||||+||++|||++|
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G  243 (361)
T 4f9c_A          164 LAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG  243 (361)
T ss_dssp             TCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence            99754322                              12344799999999999775 489999999999999999999


Q ss_pred             CCCCCCCCh-HHHHhHhhh----------cccccc----cc----ccccc---------cccccc---------CCCCCH
Q 011995          379 RKNLDSRHP-KEERNLVKW----------SRPFLA----DD----CRLSL---------IMDPQL---------KGRFPL  421 (473)
Q Consensus       379 ~~p~~~~~~-~~~~~~~~~----------~~~~~~----~~----~~~~~---------~~~~~l---------~~~~~~  421 (473)
                      +.||..... .+....+..          ...+..    ..    .....         ...+.+         ......
T Consensus       244 ~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  323 (361)
T 4f9c_A          244 RYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWN  323 (361)
T ss_dssp             CSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CT
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccc
Confidence            999965443 222221110          000000    00    00000         000000         001122


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          422 KAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       422 ~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .++.++.+|+.+||+.||.+|+|++|+|+
T Consensus       324 ~is~~a~DLl~~lL~~dP~~R~ta~eaL~  352 (361)
T 4f9c_A          324 EVPDEAYDLLDKLLDLNPASRITAEEALL  352 (361)
T ss_dssp             TCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             cCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            45678999999999999999999999986

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=8.6e-49  Score=414.02  Aligned_cols=251  Identities=17%  Similarity=0.207  Sum_probs=203.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhH---hHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVK---EFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .++|++.+.||+|+||.||+|+...   +++.+|+|++....  ......   ....++.+++.++|||||++++++.+.
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~---tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKAD---TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP  264 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             hHHeEEEEEEecccCeEEEEEEECC---CCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC
Confidence            3789999999999999999999544   45677777765321  111222   233456777888999999999999876


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                        +.+|||||||+||+|.++|...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.+|.+||+||
T Consensus       265 --~~lylVmEy~~GGdL~~~l~~~---~~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DF  336 (689)
T 3v5w_A          265 --DKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDL  336 (689)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEeccc
Confidence              8999999999999999999643   46999999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      |+|+.+......+.+||+.|||||++.+ ..|+.++|||||||++|||++|++||.+........+....          
T Consensus       337 GlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i----------  406 (689)
T 3v5w_A          337 GLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMT----------  406 (689)
T ss_dssp             TTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHH----------
T ss_pred             ceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhh----------
Confidence            9999887777777899999999999965 57999999999999999999999999764322221111110          


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~  450 (473)
                         ..  ....++..++.++.+||.+||++||.+|++     ++||++
T Consensus       407 ---~~--~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          407 ---LT--MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             ---HH--CCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             ---cC--CCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence               00  011235567789999999999999999998     677765

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=3.5e-48  Score=410.24  Aligned_cols=253  Identities=19%  Similarity=0.254  Sum_probs=210.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||.||+|....   +++.+|+|++... .....+.+.+|+.+|+.++|||||++++++.++  +.+
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~---tg~~~AiK~i~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~--~~~  229 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERA---TGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD--NEM  229 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEECC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECS--SEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECC---CCCEEEEEEEecc-chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEEC--CEE
Confidence            4789999999999999999999554   4456677766543 233456789999999999999999999999876  899


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC--CcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD--FSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~--~~vkl~DFGla  331 (473)
                      |||||||+||+|.++|..  ....+++..+..++.||+.||+|||+++   |+||||||+|||++.+  +.+||+|||++
T Consensus       230 ~iv~E~~~gg~L~~~i~~--~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a  304 (573)
T 3uto_A          230 VMIYEFMSGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLT  304 (573)
T ss_dssp             EEEEECCCCCBHHHHHTC--TTSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSC
T ss_pred             EEEEeecCCCcHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccce
Confidence            999999999999999953  2346999999999999999999999999   9999999999999854  89999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      +.+.... ....+||+.|||||++.+..|+.++|||||||++|||++|.+||.+....+....+.....           
T Consensus       305 ~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~-----------  373 (573)
T 3uto_A          305 AHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW-----------  373 (573)
T ss_dssp             EECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCC-----------
T ss_pred             eEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCC-----------
Confidence            8875443 3456899999999999999999999999999999999999999998776665444432111           


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .+.......++.++.+||.+||+.||.+|||+.|+|++
T Consensus       374 ---~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          374 ---NMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             ---CCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             ---CCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence               01111123456889999999999999999999999873

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=5.3e-47  Score=373.89  Aligned_cols=283  Identities=29%  Similarity=0.527  Sum_probs=230.0

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      +++.++...+++|...+.||+|+||.||+|.+.++    ..+++|+... ......+.+.+|+.+++.++||||++++++
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~----~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  103 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG----AKVALKRRTP-ESSQGIEEFETEIETLSFCRHPHLVSLIGF  103 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTC----CEEEEEECCS-CCSSHHHHHHHHHHGGGSCCCTTBCCEEEE
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCC----CEEEEEEecc-cChHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            45556667789999999999999999999986432    3444444332 234456789999999999999999999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcE
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      +...  +..++||||+++|+|.+++..... ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+
T Consensus       104 ~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~  178 (321)
T 2qkw_B          104 CDER--NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVP  178 (321)
T ss_dssp             CCCT--TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCE
T ss_pred             EcCC--CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCE
Confidence            8765  789999999999999999965322 346999999999999999999999999   9999999999999999999


Q ss_pred             EEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          324 KLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       324 kl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      ||+|||++.......    .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.............|...
T Consensus       179 kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~  258 (321)
T 2qkw_B          179 KITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVE  258 (321)
T ss_dssp             EECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHH
T ss_pred             EEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhh
Confidence            999999997653221    2234578999999999999999999999999999999999999987655444444444322


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      .. ....+..+.++.+...++...+..+.+++.+||+.||++|||+.+|++.|+.+...
T Consensus       259 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          259 SH-NNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             HH-TTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             cc-ccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            21 12234455666666677889999999999999999999999999999999987654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=370.34  Aligned_cols=268  Identities=18%  Similarity=0.326  Sum_probs=216.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|.+.+.||+|+||.||+|.+..+......+++|+..........+.+.+|+.+++.++||||+++++++.+.  +..
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~  125 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG--RLA  125 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG--GCC
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC--Ccc
Confidence            467889999999999999999986655555556677666544555667899999999999999999999999765  788


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus       126 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRTH--DGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRV  200 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred             EEEeeCCCCCcHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCcccc
Confidence            9999999999999999543  346999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ......     ....+|+.|+|||++.+..++.++|||||||++|||++ |..||...........+...          
T Consensus       201 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~----------  270 (325)
T 3kul_A          201 LEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG----------  270 (325)
T ss_dssp             CC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT----------
T ss_pred             cccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcC----------
Confidence            643321     22244678999999999999999999999999999999 99999877655443322211          


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCccc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTV  465 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~~~  465 (473)
                             .....+..++..+.+|+.+||..||.+|||+.+|++.|+.+.....+....
T Consensus       271 -------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~~~~  321 (325)
T 3kul_A          271 -------YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRAT  321 (325)
T ss_dssp             -------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-----
T ss_pred             -------CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccccccc
Confidence                   011123456688999999999999999999999999999998766654443

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.1e-46  Score=370.19  Aligned_cols=293  Identities=27%  Similarity=0.509  Sum_probs=232.2

Q ss_pred             CCCCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCc
Q 011995          159 TGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL  238 (473)
Q Consensus       159 ~~~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI  238 (473)
                      .+....+++.++....++|...+.||+|+||.||+|...+    ...+++|+............+.+|++++..++||||
T Consensus        14 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i   89 (326)
T 3uim_A           14 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLAD----GTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL   89 (326)
T ss_dssp             -CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSS----SCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTB
T ss_pred             cCccceecHHHHHHHhhccccceeEecCCCcEEEEEEecC----CCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCc
Confidence            3456679999999999999999999999999999997543    334455554433333344578999999999999999


Q ss_pred             ccceeeeecCCCCceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee
Q 011995          239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI  317 (473)
Q Consensus       239 v~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl  317 (473)
                      +++++++...  ...++||||+++|+|.+++.... ....+++..+..++.|++.||.|||++..++|+||||||+|||+
T Consensus        90 v~~~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~  167 (326)
T 3uim_A           90 LRLRGFCMTP--TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILL  167 (326)
T ss_dssp             CCCCEEECCS--SCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEE
T ss_pred             cceEEEEecC--CceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEE
Confidence            9999999766  77899999999999999997643 23469999999999999999999999911129999999999999


Q ss_pred             CCCCcEEEeccCCCcccCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh--HHHHh
Q 011995          318 DKDFSAKLSGYGCAGHIPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP--KEERN  392 (473)
Q Consensus       318 ~~~~~vkl~DFGla~~~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~--~~~~~  392 (473)
                      +.++.+||+|||++.......   .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.....  .....
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  247 (326)
T 3uim_A          168 DEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM  247 (326)
T ss_dssp             CTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSB
T ss_pred             CCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchh
Confidence            999999999999998764332   2334589999999999998899999999999999999999999963211  11111


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ...|...... ......+.+..+...++...+..+.+++.+||+.||.+|||+.+|++.|+...-.
T Consensus       248 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~~  312 (326)
T 3uim_A          248 LLDWVKGLLK-EKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLA  312 (326)
T ss_dssp             HHHHHTTTTS-SCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHhh-chhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcchh
Confidence            2233332222 2244556666677778889999999999999999999999999999999975443

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=3.9e-46  Score=375.38  Aligned_cols=263  Identities=19%  Similarity=0.341  Sum_probs=214.2

Q ss_pred             hcccccCcceeecCCceEEEEEECC----CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~  248 (473)
                      .++|...+.||+|+||.||+|.+..    .......+++|+............+.+|+.+|+.+ +||||+++++++...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            4689999999999999999998632    22344555666554443445567899999999999 899999999999765


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                        +.+|+||||+++|+|.+++.....             ...+++..+..++.||+.||+|||+++   |+||||||+||
T Consensus       160 --~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NI  234 (370)
T 2psq_A          160 --GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNV  234 (370)
T ss_dssp             --SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGE
T ss_pred             --CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhE
Confidence              789999999999999999975421             245899999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      ||+.++.+||+|||+++......    .....+++.|+|||++.+..++.++|||||||++|||++ |..||.+....+.
T Consensus       235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~  314 (370)
T 2psq_A          235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL  314 (370)
T ss_dssp             EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH
T ss_pred             EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence            99999999999999998664332    223356788999999999999999999999999999999 9999987654443


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ...+...                 .....+..++.++.+++.+||+.||.+|||+.||++.|+++...
T Consensus       315 ~~~~~~~-----------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~  365 (370)
T 2psq_A          315 FKLLKEG-----------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL  365 (370)
T ss_dssp             HHHHHTT-----------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-----------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            3222111                 01122445668899999999999999999999999999998653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=5.1e-46  Score=372.18  Aligned_cols=275  Identities=19%  Similarity=0.290  Sum_probs=221.4

Q ss_pred             CCCHHHHHHHhcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCccc
Q 011995          164 NFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCK  240 (473)
Q Consensus       164 ~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~  240 (473)
                      .+...+.....++|...+.||+|+||.||+|.+.+  +....+.+++|+..........+.+.+|++++.++ +|||||+
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            35566666678899999999999999999998654  44566777777776554555567899999999999 8999999


Q ss_pred             ceeeeecCCCCceEEEEEeccCCChhhhhhcCCC----------------------------------------------
Q 011995          241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD----------------------------------------------  274 (473)
Q Consensus       241 l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~----------------------------------------------  274 (473)
                      +++++...+ ...++||||+++|+|.+++.....                                              
T Consensus        91 ~~~~~~~~~-~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (359)
T 3vhe_A           91 LLGACTKPG-GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVE  169 (359)
T ss_dssp             EEEEECSTT-SCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------
T ss_pred             eeeeeecCC-CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccc
Confidence            999987653 568999999999999999975432                                              


Q ss_pred             -----------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCC
Q 011995          275 -----------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET  337 (473)
Q Consensus       275 -----------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~  337 (473)
                                       ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++......
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~  246 (359)
T 3vhe_A          170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKD  246 (359)
T ss_dssp             --------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred             ccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence                             122899999999999999999999999   999999999999999999999999999866432


Q ss_pred             C----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          338 D----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       338 ~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .    .....+|+.|+|||++.+..++.++|||||||++|||++ |..||.+............      .         
T Consensus       247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~------~---------  311 (359)
T 3vhe_A          247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLK------E---------  311 (359)
T ss_dssp             TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHH------H---------
T ss_pred             ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHH------c---------
Confidence            2    233466789999999999999999999999999999998 9999987653332111100      0         


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                       ......+..++.++.+++.+||+.||.+|||+.+|++.|+++.+.
T Consensus       312 -~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          312 -GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             -TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence             001112344567899999999999999999999999999988753

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.7e-45  Score=361.59  Aligned_cols=264  Identities=22%  Similarity=0.348  Sum_probs=206.4

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|++.+.||+|+||+||+|...+     ..+++|+..... .......+.+|++++++++||||+++++++...  
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~~~-----~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--  106 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEWHG-----SDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP--  106 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETT-----EEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST--
T ss_pred             CChhHceeeeEeecCCCeEEEEEEECC-----CcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC--
Confidence            345789999999999999999998643     334556554433 334456789999999999999999999999765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||||+++|+|.+++........+++..+..++.||+.||+|||++++ +|+||||||+|||++.++.+||+|||+
T Consensus       107 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~-~ivH~Dikp~NIll~~~~~~kL~Dfg~  185 (309)
T 3p86_A          107 PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGL  185 (309)
T ss_dssp             TCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSS-CCCCTTCCGGGEEECTTCCEEECCCC-
T ss_pred             CceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC-CEECCCCChhhEEEeCCCcEEECCCCC
Confidence            6789999999999999999654323348999999999999999999999873 399999999999999999999999999


Q ss_pred             CcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +.......  .....+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+....          
T Consensus       186 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~----------  255 (309)
T 3p86_A          186 SRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKC----------  255 (309)
T ss_dssp             ----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSC----------
T ss_pred             CccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcC----------
Confidence            97654332  234578999999999999999999999999999999999999998876555433322111          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                            ....++..++..+.+||.+||+.||.+|||+.+|++.|+.+.+..
T Consensus       256 ------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          256 ------KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             ------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             ------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence                  011224456688999999999999999999999999999987654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=362.59  Aligned_cols=261  Identities=18%  Similarity=0.298  Sum_probs=209.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||+||+|....+.   +.+++|+.. .......+.+.+|++++..++||||+++++++.++  ...
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~---~~va~K~~~-~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~   82 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETG---EVMVMKELI-RFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD--KRL   82 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTC---CEEEEEEES-CCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--TEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCC---cEEEEEEec-cCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecC--Cee
Confidence            467889999999999999999975533   344444432 23455667899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        83 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           83 NFITEYIKGGTLRGIIKSM--DSQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARL  157 (310)
T ss_dssp             EEEEECCTTCBHHHHHHHC--CTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEecCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeeccccee
Confidence            9999999999999999653  456999999999999999999999999   99999999999999999999999999976


Q ss_pred             cCCCCc----------------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc
Q 011995          334 IPETDI----------------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       334 ~~~~~~----------------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~  397 (473)
                      ......                ....+|+.|+|||.+.+..++.++|||||||++|||++|..||............   
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~---  234 (310)
T 3s95_A          158 MVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL---  234 (310)
T ss_dssp             CC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSB---
T ss_pred             cccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhh---
Confidence            643221                1456899999999999999999999999999999999999998754322110000   


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                              ......+    ..++..++..+.+++.+||+.||++|||+.+|++.|+.+.....
T Consensus       235 --------~~~~~~~----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~  285 (310)
T 3s95_A          235 --------NVRGFLD----RYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA  285 (310)
T ss_dssp             --------CHHHHHH----HTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             --------hhhcccc----ccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence                    0000011    11233455778999999999999999999999999998876543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=5.9e-45  Score=355.65  Aligned_cols=250  Identities=21%  Similarity=0.302  Sum_probs=206.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||+||+|....   ..+.+++|+..... ....+.+.+|+.+++.++||||+++++++...  +..
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~   92 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVA---TGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVG--DEL   92 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTT---TCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECC---CCcEEEEEEeeccc-ccHHHHHHHHHHHHhcCCCCCCCeEeEEEEEC--CEE
Confidence            3679999999999999999998433   34556666655432 23356788999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...    .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        93 ~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (297)
T 3fxz_A           93 WVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQ  165 (297)
T ss_dssp             EEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCcee
Confidence            9999999999999999543    4899999999999999999999999   99999999999999999999999999877


Q ss_pred             cCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      .....  .....+|+.|+|||.+.+..++.++|||||||++|||++|..||...........+....             
T Consensus       166 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~-------------  232 (297)
T 3fxz_A          166 ITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG-------------  232 (297)
T ss_dssp             CCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHC-------------
T ss_pred             cCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC-------------
Confidence            64332  344578999999999999999999999999999999999999998776544333221110             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ......+..++..+.+|+.+||+.||.+|||+.|+++.
T Consensus       233 --~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          233 --TPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             --SCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --CCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence              00011234566889999999999999999999999873

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=7.2e-45  Score=358.32  Aligned_cols=282  Identities=16%  Similarity=0.217  Sum_probs=216.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||+||+|....+   .+.+++|+..........+.+.+|++++++++||||+++++++........
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   84 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKT---GDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHK   84 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCC---CcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceE
Confidence            35799999999999999999996543   345566665543333446778899999999999999999999987655688


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee----CCCCcEEEeccC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI----DKDFSAKLSGYG  329 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl----~~~~~vkl~DFG  329 (473)
                      ++||||+++|+|.+++........+++..+..++.||+.||+|||+.+   |+||||||+|||+    +.++.+||+|||
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg  161 (319)
T 4euu_A           85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFG  161 (319)
T ss_dssp             EEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred             EEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCC
Confidence            999999999999999976544455999999999999999999999999   9999999999999    788889999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhh--------cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhH---hhh
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLE--------RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNL---VKW  396 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~--------~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~---~~~  396 (473)
                      ++....... .....+|+.|+|||++.        +..++.++|||||||++|||++|+.||........ ...   +..
T Consensus       162 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~  241 (319)
T 4euu_A          162 AARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT  241 (319)
T ss_dssp             TCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHH
T ss_pred             CceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhc
Confidence            998765443 34557899999999986        46789999999999999999999999965432211 111   110


Q ss_pred             cccc-----ccc--ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          397 SRPF-----LAD--DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       397 ~~~~-----~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ..+.     ...  ...+....+......+....+..+.+|+.+||+.||++|||+.|+++...+...++++
T Consensus       242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~~~~  313 (319)
T 4euu_A          242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRGNS  313 (319)
T ss_dssp             HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC----
T ss_pred             CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhcCCc
Confidence            0000     000  0000000011122245678899999999999999999999999999999987766654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=3.4e-45  Score=368.87  Aligned_cols=263  Identities=19%  Similarity=0.339  Sum_probs=203.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|++.........+++|+..........+.|.+|+.++.+++||||+++++++...  +..
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~~  121 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--KPV  121 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--SSC
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC--Cce
Confidence            357999999999999999999865333344555666655444455567899999999999999999999999765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++.
T Consensus       122 ~lv~e~~~~~sL~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  196 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRKH--DAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRV  196 (373)
T ss_dssp             EEEEECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             EEEEeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccc
Confidence            9999999999999999643  456999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ......     ....++..|+|||++.+..++.++|||||||++|||++ |+.||...........+...          
T Consensus       197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~----------  266 (373)
T 2qol_A          197 LEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG----------  266 (373)
T ss_dssp             -----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTT----------
T ss_pred             cccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC----------
Confidence            643321     12234678999999999999999999999999999998 99999876654433322111          


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                             .....+..++..+.+++.+||+.||.+||++.+|++.|+++.....
T Consensus       267 -------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~~  312 (373)
T 2qol_A          267 -------YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPG  312 (373)
T ss_dssp             -------EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCGG
T ss_pred             -------CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCcc
Confidence                   0011133456789999999999999999999999999999875543

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.5e-44  Score=353.64  Aligned_cols=283  Identities=26%  Similarity=0.437  Sum_probs=223.1

Q ss_pred             CCcCCCHHHHHHHhcccccC------cceeecCCceEEEEEECCCCeeeeEEEEEEEecC---CCChhhHhHHHHHHHHH
Q 011995          161 TLRNFPLDEVAAACHNFFSD------RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLA  231 (473)
Q Consensus       161 ~~~~~~~~el~~~~~~f~~~------~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ei~~l~  231 (473)
                      ....|++.++..++++|...      +.||+|+||.||+|...+     ..+++|+....   ......+.+.+|+.+++
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~   85 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-----TTVAVKKLAAMVDITTEELKQQFDQEIKVMA   85 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSS-----CEEEEEEECCCTTSCTTTHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECC-----ceEEEEEEecccCcchHHHHHHHHHHHHHHH
Confidence            45669999999999999877      899999999999998533     33445544332   12344677999999999


Q ss_pred             hCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCC
Q 011995          232 SLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS  311 (473)
Q Consensus       232 ~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlk  311 (473)
                      .++||||+++++++...  +..++||||+++|+|.+++........+++..+..++.|++.||.|||+++   |+|||||
T Consensus        86 ~l~h~~i~~~~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlk  160 (307)
T 2nru_A           86 KCQHENLVELLGFSSDG--DDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIK  160 (307)
T ss_dssp             HCCCTTBCCEEEEECSS--SSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCC
T ss_pred             hcCCCCeEEEEEEEecC--CceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCC
Confidence            99999999999999765  789999999999999999975444567999999999999999999999999   9999999


Q ss_pred             CCceeeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCCh
Q 011995          312 TANIQIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP  387 (473)
Q Consensus       312 p~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~  387 (473)
                      |+|||++.++.+||+|||++.......    .....+++.|+|||.+.+ .++.++|||||||++|||++|..||.....
T Consensus       161 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  239 (307)
T 2nru_A          161 SANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHRE  239 (307)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred             HHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence            999999999999999999987654321    233467899999998865 589999999999999999999999976543


Q ss_pred             HHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      ......+.  .........+....+..+ ...+...+..+.+++.+||+.||.+|||+.+|++.|+++..
T Consensus       240 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          240 PQLLLDIK--EEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             SSBTTHHH--HHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             hHHHHHHH--HHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            22111110  000011111222233322 23467788999999999999999999999999999998753

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.9e-45  Score=362.92  Aligned_cols=249  Identities=18%  Similarity=0.294  Sum_probs=208.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|....   +++.+++|+..... .....+.+.+|+.+|+.++||||+++++++...  +.
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~--~~   88 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHIL---TGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETE--KT   88 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETT---TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS--SE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECC---CCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC--CE
Confidence            5689999999999999999998543   34556666665432 334567789999999999999999999999776  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|+||||+++|+|.+++...   ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~  162 (328)
T 3fe3_A           89 LYLIMEYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSN  162 (328)
T ss_dssp             EEEEECCCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCG
T ss_pred             EEEEEECCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCce
Confidence            99999999999999999543   45999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCC-CccCcccccccCChhhhhcCCCC-CcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPET-DISNSSVAAANLSVETLERGLLT-PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~s-~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ..... ......+|+.|+|||++.+..+. .++|||||||++|||++|+.||.+.........+....            
T Consensus       163 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~------------  230 (328)
T 3fe3_A          163 EFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK------------  230 (328)
T ss_dssp             GGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC------------
T ss_pred             ecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC------------
Confidence            66443 33456889999999999888765 78999999999999999999998876655443332111            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            ..++...+.++.+|+.+||..||.+|||+.|+++.
T Consensus       231 ------~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          231 ------YRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             ------CCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             ------CCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                  01234456789999999999999999999999874

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1e-45  Score=365.08  Aligned_cols=272  Identities=15%  Similarity=0.205  Sum_probs=204.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC--CC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG--SD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~--~~  251 (473)
                      .++|+..+.||+|+||+||+|.+.+     +.+++|+..  ........+.+|+.++.+++|||||++++++....  ..
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~vavK~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   95 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLLN-----EYVAVKIFP--IQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDV   95 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEETT-----EEEEEEEEC--GGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSE
T ss_pred             hhhchhhheecccCceEEEEEEECC-----CEEEEEEee--cCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCc
Confidence            4689999999999999999998653     344555543  23344456677999999999999999999988653  23


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc----------CCCceeecCCCCCceeeCCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE----------GPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~----------~~~~ivHrDlkp~NILl~~~~  321 (473)
                      .+++||||+++|+|.+++...    .+++..+..++.|++.||.|||+.          +   |+||||||+|||++.++
T Consensus        96 ~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~  168 (322)
T 3soc_A           96 DLWLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNL  168 (322)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTC
T ss_pred             eEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCC
Confidence            479999999999999999543    499999999999999999999998          8   99999999999999999


Q ss_pred             cEEEeccCCCcccCCCC----ccCcccccccCChhhhhcC-----CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHh
Q 011995          322 SAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERG-----LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERN  392 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~-----~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~  392 (473)
                      .+||+|||+++......    .....+|+.|+|||++.+.     .++.++|||||||++|||++|+.||.+........
T Consensus       169 ~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~  248 (322)
T 3soc_A          169 TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLP  248 (322)
T ss_dssp             CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCT
T ss_pred             eEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccc
Confidence            99999999997664332    2335789999999999763     35668899999999999999999997654321111


Q ss_pred             Hhhhcccccccccc----cccccccccCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          393 LVKWSRPFLADDCR----LSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       393 ~~~~~~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ..............    ......+.+...+ ....+.++.+|+.+||+.||++|||+.+|++.|+++....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~~  320 (322)
T 3soc_A          249 FEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT  320 (322)
T ss_dssp             THHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             hhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            11000000000000    0001111111111 2356678999999999999999999999999999987654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.3e-44  Score=347.47  Aligned_cols=255  Identities=18%  Similarity=0.330  Sum_probs=209.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|...++.    .+++|+.  .......+.+.+|++++++++||||+++++++.+.  ...
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~vavK~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~   80 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKD----KVAIKTI--REGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ--API   80 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTE----EEEEEEE--CTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSS--SSE
T ss_pred             hhhceeeheecCCCccEEEEEEecCCC----eEEEEEe--cccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecC--Cce
Confidence            357888999999999999999975432    3444444  33444557899999999999999999999999765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           81 CLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             EEEEECCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             EEEEEeCCCCcHHHHHHhc--CcccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEecccccccc
Confidence            9999999999999999543  346899999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....   .....+++.|+|||.+.+..++.++|||||||++|||++ |..||...........+...            
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~------------  223 (269)
T 4hcu_A          156 VLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG------------  223 (269)
T ss_dssp             BCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT------------
T ss_pred             ccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcC------------
Confidence            64432   233455678999999999999999999999999999999 99999876655433322211            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                           .....+...+..+.+++.+||+.||.+|||+.++++.|+++.+.
T Consensus       224 -----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          224 -----FRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             -----CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             -----ccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence                 00111333467899999999999999999999999999998764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.8e-44  Score=363.35  Aligned_cols=266  Identities=21%  Similarity=0.353  Sum_probs=218.0

Q ss_pred             hcccccCcceeecCCceEEEEEECC----CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~  248 (473)
                      .++|.+.+.||+|+||.||+|....    .......+++|+............+.+|++++..+ +|||||++++++...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            4689999999999999999998632    22344566666665554555668899999999999 999999999999766


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                        +..++||||+++|+|.+++.....             ...+++..+..++.||+.||.|||+++   |+||||||+||
T Consensus       148 --~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NI  222 (382)
T 3tt0_A          148 --GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNV  222 (382)
T ss_dssp             --SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGE
T ss_pred             --CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceE
Confidence              789999999999999999975431             246999999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      ||+.++.+||+|||++.......    .....+|+.|+|||++.+..++.++|||||||++|||++ |..||......+.
T Consensus       223 ll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~  302 (382)
T 3tt0_A          223 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL  302 (382)
T ss_dssp             EECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH
T ss_pred             EEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            99999999999999998764432    233456789999999999999999999999999999999 9999987765543


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ...+....                 ....+..++.++.+|+.+||+.||.+|||+.+|++.|+++....+.
T Consensus       303 ~~~~~~~~-----------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~  356 (382)
T 3tt0_A          303 FKLLKEGH-----------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN  356 (382)
T ss_dssp             HHHHHTTC-----------------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHcCC-----------------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhc
Confidence            33222110                 1112334567899999999999999999999999999998765543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=6e-45  Score=352.29  Aligned_cols=260  Identities=18%  Similarity=0.314  Sum_probs=202.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|....+......+++++..........+.+.+|+.+++.++||||+++++++.+   +..
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~   90 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE---NPV   90 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS---SSC
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc---Ccc
Confidence            46899999999999999999997655444455555555443444556789999999999999999999999843   578


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           91 WIIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             EEEEECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC------
T ss_pred             EEEEecCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccc
Confidence            9999999999999999643  346899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......   ....+++.|+|||.+.+..++.++|||||||++|||++ |..||......+....+....           
T Consensus       166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~-----------  234 (281)
T 1mp8_A          166 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE-----------  234 (281)
T ss_dssp             -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-----------
T ss_pred             cCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCC-----------
Confidence            644321   22345678999999999999999999999999999996 999998765544332221110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                            ...++..++..+.+++.+||..||.+|||+.++++.|+++...
T Consensus       235 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          235 ------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence                  0112345568899999999999999999999999999988653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.9e-45  Score=358.17  Aligned_cols=279  Identities=19%  Similarity=0.255  Sum_probs=209.2

Q ss_pred             hcccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||+||+|++.. +....+.+++|+... ......+.+.+|++++.+++||||+++++++...+...
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESC-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            4678999999999999999998642 233455666665542 23445578999999999999999999999987654467


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~  162 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTK  162 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHC--GGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred             eEEEEEeCCCCCHHHHHHhc--ccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCcccc
Confidence            89999999999999999653  335899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          333 HIPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       333 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ......     .....++..|+|||.+.+..++.++|||||||++|||++|..||.................... ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  241 (295)
T 3ugc_A          163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMI-VFHL  241 (295)
T ss_dssp             -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHH-HHHH
T ss_pred             cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchh-HHHH
Confidence            764332     1223456779999999999999999999999999999999999865322111100000000000 0000


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ............+..++.++.+|+.+||+.||.+|||+.+|++.|+++..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          242 IELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            0011111122234566789999999999999999999999999999987653

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.4e-44  Score=354.23  Aligned_cols=261  Identities=20%  Similarity=0.307  Sum_probs=212.9

Q ss_pred             cCCCHHHHHHHhcc----------cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHh
Q 011995          163 RNFPLDEVAAACHN----------FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLAS  232 (473)
Q Consensus       163 ~~~~~~el~~~~~~----------f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~  232 (473)
                      ..++++++..+++.          |...+.||+|+||.||+|....+   ++.+++|+.... .....+.+.+|+.+++.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~---g~~vavK~~~~~-~~~~~~~~~~E~~~l~~   98 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHS---GRQVAVKMMDLR-KQQRRELLFNEVVIMRD   98 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEETT-TCCSHHHHHHHHHHHTT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCC---CcEEEEEEEecc-chhHHHHHHHHHHHHHh
Confidence            34889999988864          66778999999999999986533   345566665543 23445778999999999


Q ss_pred             CCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCC
Q 011995          233 LQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST  312 (473)
Q Consensus       233 l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp  312 (473)
                      ++||||+++++++...  +..++||||+++|+|.+++..    ..+++..+..++.|++.||.|||+.+   |+||||||
T Consensus        99 l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~L~~~l~~----~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp  169 (321)
T 2c30_A           99 YQHFNVVEMYKSYLVG--EELWVLMEFLQGGALTDIVSQ----VRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKS  169 (321)
T ss_dssp             CCCTTBCCEEEEEEET--TEEEEEECCCCSCBHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSG
T ss_pred             CCCCCcceEEEEEEEC--CEEEEEEecCCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCH
Confidence            9999999999999876  789999999999999999843    35999999999999999999999999   99999999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE  390 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~  390 (473)
                      +|||++.++.+||+|||++......  ......+|+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus       170 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~  249 (321)
T 2c30_A          170 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQA  249 (321)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH
T ss_pred             HHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9999999999999999998776443  23445789999999999999999999999999999999999999987665443


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+....             .+.+  ......+..+.+++.+||+.||.+|||+.++++.
T Consensus       250 ~~~~~~~~-------------~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          250 MKRLRDSP-------------PPKL--KNSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             HHHHHHSS-------------CCCC--TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHhcCC-------------CCCc--CccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            32221110             0011  1123456789999999999999999999999874

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.1e-45  Score=370.98  Aligned_cols=259  Identities=19%  Similarity=0.338  Sum_probs=211.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|.+..+.   ..+++|+............|.+|+.+|+.++|||||++++++...  +..
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~---~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--~~~  187 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADN---TLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK--QPI  187 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTC---CEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSS--SSC
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCC---eEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecC--CCc
Confidence            457888899999999999999976432   344555544333344456799999999999999999999999765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  +..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++.
T Consensus       188 ~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          188 YIVMELVQGGDFLTFLRTE--GARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSRE  262 (377)
T ss_dssp             EEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             EEEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCcee
Confidence            9999999999999999642  345899999999999999999999999   99999999999999999999999999976


Q ss_pred             cCCCCcc----CcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDIS----NSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~~----~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......    ...++..|+|||.+.++.++.++|||||||++|||++ |..||...........+...           
T Consensus       263 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~-----------  331 (377)
T 3cbl_A          263 EADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKG-----------  331 (377)
T ss_dssp             CTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTT-----------
T ss_pred             cCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-----------
Confidence            5433221    1234678999999999999999999999999999998 99999887655443332211           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                            .....+..++..+.+|+.+||+.||++|||+.+|++.|+++.++.
T Consensus       332 ------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~~  376 (377)
T 3cbl_A          332 ------GRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH  376 (377)
T ss_dssp             ------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             ------CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence                  011123445678999999999999999999999999999987653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=7.5e-45  Score=365.63  Aligned_cols=264  Identities=19%  Similarity=0.301  Sum_probs=212.6

Q ss_pred             hcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|.+.+  +....+.+++|+............+.+|+.++.+++|||||++++++...  .
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--~  147 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS--L  147 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--S
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecC--C
Confidence            3678999999999999999999765  23345566666654444555667899999999999999999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCC----CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC---cEE
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS----DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF---SAK  324 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~---~vk  324 (473)
                      ..++||||+++|+|.+++....    ....+++..++.++.||+.||+|||+++   |+||||||+||||+.++   .+|
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEE
Confidence            7899999999999999996532    2246899999999999999999999999   99999999999999554   599


Q ss_pred             EeccCCCcccCC----CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPE----TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~----~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||+++....    .......+|+.|+|||++.+..++.++|||||||++|||++ |..||...........+.... 
T Consensus       225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~-  303 (367)
T 3l9p_A          225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG-  303 (367)
T ss_dssp             ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-
T ss_pred             ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC-
Confidence            999999975422    12233456889999999999999999999999999999998 999998876554433332110 


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                                      ....+..++..+.+|+.+||+.||.+|||+.+|++.|+.+....
T Consensus       304 ----------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          304 ----------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             ----------------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence                            01123345678999999999999999999999999999876543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-44  Score=358.97  Aligned_cols=268  Identities=22%  Similarity=0.331  Sum_probs=215.9

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      ....++|...+.||+|+||.||+|...+..  ...+.+++|+............+.+|+.++..++||||+++++++.+.
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  122 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG  122 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence            344688999999999999999999875422  344566666655444445567899999999999999999999999765


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceee
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSD---------------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMY  307 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivH  307 (473)
                        +..++||||+++|+|.+++.....                     ...+++..++.++.||+.||.|||+++   |+|
T Consensus       123 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH  197 (343)
T 1luf_A          123 --KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVH  197 (343)
T ss_dssp             --SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCC
T ss_pred             --CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eec
Confidence              789999999999999999965321                     257999999999999999999999999   999


Q ss_pred             cCCCCCceeeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCC
Q 011995          308 NEFSTANIQIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNL  382 (473)
Q Consensus       308 rDlkp~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~  382 (473)
                      |||||+|||++.++.+||+|||++.......    .....+++.|+|||.+.+..++.++|||||||++|||++ |..||
T Consensus       198 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~  277 (343)
T 1luf_A          198 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY  277 (343)
T ss_dssp             SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             CCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcC
Confidence            9999999999999999999999987653322    223456789999999999999999999999999999999 99999


Q ss_pred             CCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          383 DSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                      .+....+....+....                 ...++..++..+.+++.+||+.||.+|||+.+|++.|+++..+..
T Consensus       278 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          278 YGMAHEEVIYYVRDGN-----------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             TTSCHHHHHHHHHTTC-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             CCCChHHHHHHHhCCC-----------------cCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence            8766544332221100                 011234556789999999999999999999999999999886554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=2.7e-44  Score=360.52  Aligned_cols=253  Identities=17%  Similarity=0.209  Sum_probs=206.8

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----hhhHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----QGVKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      ..+.|.+.+.||+|+||.||+|....   ++..+++|+.......     ...+.+.+|+.+|..++||||+++++++.+
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~---~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~   86 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKS---TGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN   86 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECC---CCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe
Confidence            35679999999999999999998654   3455666666544321     135678999999999999999999999977


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC----cE
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF----SA  323 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~----~v  323 (473)
                      .  ..+++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++    .+
T Consensus        87 ~--~~~~lv~e~~~gg~L~~~l~~---~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~v  158 (361)
T 2yab_A           87 R--TDVVLILELVSGGELFDFLAQ---KESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHI  158 (361)
T ss_dssp             S--SEEEEEEECCCSCBHHHHHTT---CSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCE
T ss_pred             C--CEEEEEEEcCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCE
Confidence            6  789999999999999999943   346999999999999999999999999   99999999999998776    79


Q ss_pred             EEeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc
Q 011995          324 KLSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       324 kl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      ||+|||++...... ......+|+.|+|||++.+..++.++|||||||++|+|++|..||.+....+....+......  
T Consensus       159 kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~--  236 (361)
T 2yab_A          159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYD--  236 (361)
T ss_dssp             EECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCC--
T ss_pred             EEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCC--
Confidence            99999999876543 334567899999999999989999999999999999999999999887655543333211000  


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                  ....+....+..+.+||.+||..||.+|||+.|+++
T Consensus       237 ------------~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          237 ------------FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             ------------CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ------------CCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                        000011234578999999999999999999999985

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=8.1e-45  Score=359.50  Aligned_cols=259  Identities=19%  Similarity=0.342  Sum_probs=205.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||+||+|.+..+.. ...++++|..+........+.+.+|+.++++++||||+++++++...   .
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~   90 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS---T   90 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS---S
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC---C
Confidence            3679999999999999999999754432 22334444443333445667899999999999999999999999763   5


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++|+||+.+|+|.+++...  ...+++..+..|+.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~  165 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHS--TTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred             eEEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCccee
Confidence            78999999999999999653  356999999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          333 HIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       333 ~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .......    ....+|..|+|||.+.+..++.++|||||||++|||++ |..||...........+....         
T Consensus       166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~---------  236 (327)
T 3poz_A          166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE---------  236 (327)
T ss_dssp             HHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC---------
T ss_pred             EccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCC---------
Confidence            6643321    23345779999999999999999999999999999999 999998766544333332111         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                              ....+..++.++.+++.+||+.||.+||++.+|++.|+++..
T Consensus       237 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          237 --------RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             --------CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             --------CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence                    111234456789999999999999999999999999998764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1.2e-44  Score=347.84  Aligned_cols=255  Identities=24%  Similarity=0.375  Sum_probs=196.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC---ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS---SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||+|.+.+     ..+++|+......   ....+.+.+|+++++.++||||+++++++...  
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--   78 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWIG-----DEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKE--   78 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEETT-----EEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--
T ss_pred             hhheeeeeeeccCCCeEEEEEEEcC-----CeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC--
Confidence            3678999999999999999998653     3344555443321   23457789999999999999999999999765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC--------CCc
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK--------DFS  322 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~--------~~~  322 (473)
                      +..++||||+++++|.+++.    ...+++..+..++.|++.||.|||+++..+|+||||||+|||++.        ++.
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~----~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~  154 (271)
T 3dtc_A           79 PNLCLVMEFARGGPLNRVLS----GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKI  154 (271)
T ss_dssp             --CEEEEECCTTEEHHHHHT----SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCC
T ss_pred             CceEEEEEcCCCCCHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcc
Confidence            78899999999999999983    346999999999999999999999998555889999999999986        678


Q ss_pred             EEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc
Q 011995          323 AKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      +||+|||++............+++.|+|||.+.+..++.++||||||+++|||++|+.||...........+...     
T Consensus       155 ~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-----  229 (271)
T 3dtc_A          155 LKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMN-----  229 (271)
T ss_dssp             EEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTS-----
T ss_pred             eEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcC-----
Confidence            999999999877655555667899999999999999999999999999999999999999876654433222111     


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          403 DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       403 ~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                                 ......+..++..+.+++.+||+.||.+|||+.|+++.|+++
T Consensus       230 -----------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          230 -----------KLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             -----------CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             -----------CCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence                       111122445568899999999999999999999999999864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.3e-44  Score=352.69  Aligned_cols=264  Identities=18%  Similarity=0.258  Sum_probs=209.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|++.+.||+|+||.||+|....   ....+++|+.....  .....+.+.+|+.++..++||||+++++++...  +
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~--~   84 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTI---LNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEED--D   84 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETT---TCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECS--S
T ss_pred             hccEEEEEEEccCCCEEEEEEEECC---CCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeC--C
Confidence            3579999999999999999998543   34556666654432  334457899999999999999999999998766  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        85 ~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  158 (294)
T 4eqm_A           85 CYYLVMEYIEGPTLSEYIESH---GPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIA  158 (294)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSS
T ss_pred             eEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCc
Confidence            899999999999999999543   36999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          332 GHIPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       332 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......   .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||.+..............          
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~----------  228 (294)
T 4eqm_A          159 KALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDS----------  228 (294)
T ss_dssp             TTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSC----------
T ss_pred             cccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhcc----------
Confidence            8764332   233468999999999999999999999999999999999999998766543321111000          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhcccCC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-TMRSIFEELDRQESRKSS  461 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~l~~~~~~  461 (473)
                         .+.....+...++..+.+++.+||..||.+|| +++++.+.|+.+......
T Consensus       229 ---~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~  279 (294)
T 4eqm_A          229 ---VPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRA  279 (294)
T ss_dssp             ---CCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSST
T ss_pred             ---CCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhccC
Confidence               00000111234557899999999999999998 999999999987755443

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1.6e-44  Score=346.45  Aligned_cols=255  Identities=18%  Similarity=0.332  Sum_probs=208.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|...++.    .+++|+..  .......++.+|++++.+++||||+++++++...  ...
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~vavK~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~   78 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQY----DVAVKMIK--EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKE--YPI   78 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTE----EEEEEEEC--BTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SSE
T ss_pred             hhheeeeeeeccCCCceEEEEEecCce----eEEEEEec--cCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccC--Cce
Confidence            467999999999999999999876532    24444443  3334457799999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++...  ...+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        79 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  153 (268)
T 3sxs_A           79 YIVTEYISNGCLLNYLRSH--GKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRY  153 (268)
T ss_dssp             EEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEE
T ss_pred             EEEEEccCCCcHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCcccee
Confidence            9999999999999999543  345899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......   ....+++.|+|||.+.+..++.++||||||+++|||++ |..||...........+.....          
T Consensus       154 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~----------  223 (268)
T 3sxs_A          154 VLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHR----------  223 (268)
T ss_dssp             CCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC----------
T ss_pred             cchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCC----------
Confidence            654432   23345677999999999889999999999999999999 9999987665544332221110          


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                             ...+...+..+.+++.+||+.||.+|||+.++++.|+.+..+
T Consensus       224 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          224 -------LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             -------CCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             -------CCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence                   011233457899999999999999999999999999998754

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.4e-44  Score=352.97  Aligned_cols=263  Identities=22%  Similarity=0.382  Sum_probs=214.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|.....  ......+++|+..........+.+.+|+.+++.++||||+++++++...  +
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~   99 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD--G   99 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--S
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC--C
Confidence            56899999999999999999986322  2344556666655444455567899999999999999999999998765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC---------------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD---------------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF  310 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDl  310 (473)
                      ..++||||+++|+|.+++.....                     ...+++..+..++.||+.||.|||+++   |+||||
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~di  176 (314)
T 2ivs_A          100 PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRDL  176 (314)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT---EECCCC
T ss_pred             ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC---Cccccc
Confidence            89999999999999999975432                     234899999999999999999999999   999999


Q ss_pred             CCCceeeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCC
Q 011995          311 STANIQIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSR  385 (473)
Q Consensus       311 kp~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~  385 (473)
                      ||+|||++.++.+||+|||++.......    .....+++.|+|||.+.+..++.++|||||||++|||++ |..||.+.
T Consensus       177 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  256 (314)
T 2ivs_A          177 AARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  256 (314)
T ss_dssp             SGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             chheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999998664332    123356788999999999889999999999999999999 99999876


Q ss_pred             ChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          386 HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ........+....                 ....+..++..+.+++.+||+.||.+|||+.+|++.|+++..+
T Consensus       257 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          257 PPERLFNLLKTGH-----------------RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             CGGGHHHHHHTTC-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhhcCC-----------------cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence            6544333222110                 1112345568899999999999999999999999999998764

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.7e-44  Score=347.69  Aligned_cols=256  Identities=16%  Similarity=0.272  Sum_probs=207.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|.+.++.    .+++|+.  .......+++.+|++++..++||||+++++++.+.  ...
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~vavK~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~~   94 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQY----DVAIKMI--KEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--RPI   94 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTE----EEEEEEE--CTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSS--SSE
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCC----eEEEEEe--cCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecC--CCe
Confidence            468889999999999999999876532    2344443  33444557899999999999999999999999765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        95 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~  169 (283)
T 3gen_A           95 FIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRY  169 (283)
T ss_dssp             EEEECCCTTCBHHHHHHCG--GGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGG
T ss_pred             EEEEeccCCCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEcccccccc
Confidence            9999999999999999642  346999999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....   .....+++.|+|||.+.+..++.++|||||||++|||++ |+.||...........+....           
T Consensus       170 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~-----------  238 (283)
T 3gen_A          170 VLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGL-----------  238 (283)
T ss_dssp             BCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTC-----------
T ss_pred             ccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhccc-----------
Confidence            64432   223345678999999999999999999999999999998 999998776554433322110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                            ....+...+..+.+++.+||+.||.+|||+.++++.|+++..+.
T Consensus       239 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~e  282 (283)
T 3gen_A          239 ------RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE  282 (283)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             ------CCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhcc
Confidence                  01113334578999999999999999999999999999987654

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.1e-44  Score=353.27  Aligned_cols=266  Identities=19%  Similarity=0.309  Sum_probs=214.4

Q ss_pred             hcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|...+.||+|+||.||+|.+..  +....+.+++|+..........+.+.+|+.++.++ +||||+++++++...  
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~--   99 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG--   99 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC--
Confidence            4689999999999999999998633  23355666677665444445567899999999999 999999999999766  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCC---------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSD---------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                      +..++||||+++|+|.+++.....               ...+++..+..++.||+.||.|||+++   |+||||||+||
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Ni  176 (313)
T 1t46_A          100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNI  176 (313)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGE
T ss_pred             CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceE
Confidence            788999999999999999965432               235899999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      |++.++.+||+|||++........    ....+++.|+|||.+.+..++.++|||||||++|||++ |..||........
T Consensus       177 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~  256 (313)
T 1t46_A          177 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK  256 (313)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH
Confidence            999999999999999987654322    23356778999999999999999999999999999999 9999987653322


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                      ......      .          ......+...+..+.+++.+||+.||.+|||+.+|++.|+++..+..
T Consensus       257 ~~~~~~------~----------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  310 (313)
T 1t46_A          257 FYKMIK------E----------GFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISEST  310 (313)
T ss_dssp             HHHHHH------H----------TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhc------c----------CCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhh
Confidence            111100      0          00111133456789999999999999999999999999999876543

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-44  Score=355.25  Aligned_cols=252  Identities=15%  Similarity=0.165  Sum_probs=205.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+..  ........+.+|+.+++.++||||+++++++.+.  +..
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~---~~~~a~K~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--~~~   76 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSS---KKTYMAKFVK--VKGTDQVLVKKEISILNIARHRNILHLHESFESM--EEL   76 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEC--CCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEET--TEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCC---CcEEEEEEEe--cCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecC--CEE
Confidence            46899999999999999999986543   3455555544  3344556788999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC--CCcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK--DFSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~--~~~vkl~DFGla  331 (473)
                      ++||||+++|+|.+++..  ....+++..+..++.||+.||.|||+++   |+||||||+|||++.  ++.+||+|||++
T Consensus        77 ~lv~e~~~g~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a  151 (321)
T 1tki_A           77 VMIFEFISGLDIFERINT--SAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQA  151 (321)
T ss_dssp             EEEECCCCCCBHHHHHTS--SSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTC
T ss_pred             EEEEEeCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCC
Confidence            999999999999999953  2346999999999999999999999999   999999999999987  789999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....... .....+|+.|+|||++.+..++.++|||||||++|||++|..||...........+........        
T Consensus       152 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~--------  223 (321)
T 1tki_A          152 RQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFD--------  223 (321)
T ss_dssp             EECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCC--------
T ss_pred             eECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCC--------
Confidence            8775433 2345688999999999988899999999999999999999999988765544333221110000        


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        .    .....++.++.+|+.+||..||.+|||+.|+++.
T Consensus       224 --~----~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          224 --E----EAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             --H----HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             --h----hhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence              0    0012346789999999999999999999999984

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.6e-44  Score=357.06  Aligned_cols=259  Identities=18%  Similarity=0.308  Sum_probs=208.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|.+..+.. ...++++++............+.+|+.++..++||||+++++++..   ...
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---~~~   89 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG---SSL   89 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB---SSE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC---Ccc
Confidence            578888999999999999999754433 3334455554444444556778899999999999999999999853   578


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++.
T Consensus        90 ~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQH--RGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADL  164 (325)
T ss_dssp             EEEEECCTTCBSHHHHHSS--GGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGG
T ss_pred             EEEEEeCCCCCHHHHHHHc--cccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccc
Confidence            9999999999999999643  346899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .....    .....++..|+|||.+.+..++.++|||||||++|||++ |..||.+.........+.....         
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~---------  235 (325)
T 3kex_A          165 LPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGER---------  235 (325)
T ss_dssp             SCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCB---------
T ss_pred             cCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCC---------
Confidence            64332    233456779999999999999999999999999999999 9999987665544333322110         


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                              ...+..++.++.+++.+||..||.+|||+.++++.|+++...
T Consensus       236 --------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          236 --------LAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             --------CCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             --------CCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                    011223445678999999999999999999999999987643

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4.7e-44  Score=348.67  Aligned_cols=263  Identities=19%  Similarity=0.336  Sum_probs=207.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ..+|...+.||+|+||+||+|.+.++......+++++..........+.+.+|+.++++++||||+++++++...+ +..
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~  102 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE-GSP  102 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS-SCC
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCC-Cce
Confidence            3568888999999999999999765544444445555444344455678999999999999999999999876543 678


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++..  ....+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus       103 ~~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          103 LVVLPYMKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARD  177 (298)
T ss_dssp             EEEEECCTTCBHHHHHHC--TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred             EEEEeCCCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECccccccc
Confidence            999999999999999964  3456899999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCCC------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          334 IPETD------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       334 ~~~~~------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      .....      .....+|+.|+|||.+.+..++.++|||||||++|||++ |.+||...........+....        
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~--------  249 (298)
T 3f66_A          178 MYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR--------  249 (298)
T ss_dssp             CSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTC--------
T ss_pred             ccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCC--------
Confidence            64332      223456678999999999999999999999999999999 667776654433222221100        


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                               ....+..++..+.+++.+||+.||.+|||+.++++.|+++....
T Consensus       250 ---------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~  293 (298)
T 3f66_A          250 ---------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF  293 (298)
T ss_dssp             ---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred             ---------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence                     00113334578999999999999999999999999999987643

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=2.1e-44  Score=358.02  Aligned_cols=249  Identities=17%  Similarity=0.241  Sum_probs=206.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||.||+|....   +++.+++|+.....  .......+.+|+.+|..++||||+++++++.+.  +
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~--~   78 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKA---TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH--D   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS--S
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECC---CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeC--C
Confidence            4689999999999999999998654   34556666654321  223456788999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        79 ~~~lv~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a  152 (337)
T 1o6l_A           79 RLCFVMEYANGGELFFHLSR---ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLC  152 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccch
Confidence            89999999999999999854   246899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCC--CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPE--TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~--~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +....  ......++|+.|+|||++.+..++.++|||||||++|||++|..||...........+....           
T Consensus       153 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~-----------  221 (337)
T 1o6l_A          153 KEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEE-----------  221 (337)
T ss_dssp             BCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-----------
T ss_pred             hhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCC-----------
Confidence            76432  23345688999999999999999999999999999999999999998766544333222110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                             ..++...+.++.+||.+||+.||.+||     ++.+|++.
T Consensus       222 -------~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          222 -------IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             -------CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             -------CCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence                   113445668899999999999999999     89999864

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.9e-44  Score=363.38  Aligned_cols=264  Identities=19%  Similarity=0.339  Sum_probs=202.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ..|...+.||+|+||.||+|.+.+.......+++|+..........+.|.+|+.++++++||||+++++++.... +..+
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~-~~~~  167 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE-GSPL  167 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCS-SCCE
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC-CCeE
Confidence            346777899999999999998754433334444554443344556788999999999999999999999876542 6789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++..  ....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++..
T Consensus       168 lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~  242 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDM  242 (373)
T ss_dssp             EEEECCTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EEEECCCCCCHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeeccccccc
Confidence            99999999999999964  3456899999999999999999999999   999999999999999999999999999866


Q ss_pred             CCCCc------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          335 PETDI------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       335 ~~~~~------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .....      ....+++.|+|||.+.+..++.++|||||||++|||++ |.+||......+....+....         
T Consensus       243 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~---------  313 (373)
T 3c1x_A          243 YDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR---------  313 (373)
T ss_dssp             ---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTC---------
T ss_pred             cccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCC---------
Confidence            43221      23345678999999999999999999999999999999 788887654433222221100         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                              ....+..++..+.+++.+||+.||.+|||+.+|++.|+++......
T Consensus       314 --------~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~  359 (373)
T 3c1x_A          314 --------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG  359 (373)
T ss_dssp             --------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred             --------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence                    0011334567899999999999999999999999999998765543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-44  Score=358.11  Aligned_cols=264  Identities=19%  Similarity=0.287  Sum_probs=208.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|...+.||+|+||.||+|.....  ......+++|+............+.+|+.++.++ +||||+++++++...  
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~--  121 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS--  121 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC--
Confidence            47899999999999999999986332  2244556666665444445567899999999999 999999999999775  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDG--------------------PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEF  310 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDl  310 (473)
                      +..++||||+++|+|.+++......                    ..+++..+..++.||+.||+|||+++   |+||||
T Consensus       122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Di  198 (344)
T 1rjb_A          122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDL  198 (344)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTC
T ss_pred             CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCC
Confidence            7899999999999999999754321                    34899999999999999999999999   999999


Q ss_pred             CCCceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCC
Q 011995          311 STANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSR  385 (473)
Q Consensus       311 kp~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~  385 (473)
                      ||+|||++.++.+||+|||++........    ....+|+.|+|||.+.+..++.++|||||||++|||+| |..||...
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  278 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  278 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999986643321    23355778999999999999999999999999999998 99999876


Q ss_pred             ChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          386 HPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ..........                ........+..++.++.+|+.+||..||.+|||+.+|++.|+.+...
T Consensus       279 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          279 PVDANFYKLI----------------QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             CCSHHHHHHH----------------HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             CcHHHHHHHH----------------hcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            5332211110                00011122344568899999999999999999999999999987654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.9e-44  Score=352.77  Aligned_cols=253  Identities=17%  Similarity=0.217  Sum_probs=205.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----hhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----QGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .++|...+.||+|+||.||+|....   ++..+++|+.......     ...+.+.+|+.+|+.++||||+++++++...
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   86 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKS---TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK   86 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETT---TCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             ccceEeceEEeeCCCeEEEEEEECC---CCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeC
Confidence            4679999999999999999998654   3345566665543221     2357799999999999999999999999875


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC----cEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF----SAK  324 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~----~vk  324 (473)
                        ...++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++    .+|
T Consensus        87 --~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~k  158 (326)
T 2y0a_A           87 --TDVILILELVAGGELFDFLAE---KESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIK  158 (326)
T ss_dssp             --SEEEEEEECCCSCBHHHHHTT---SSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEE
T ss_pred             --CEEEEEEEcCCCCCHHHHHHh---cCCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEE
Confidence              789999999999999999943   356999999999999999999999999   99999999999999887    799


Q ss_pred             EeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          325 LSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       325 l~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+|||++...... ......+|+.|+|||++.+..++.++|||||||++|||++|..||.+.........+......   
T Consensus       159 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~---  235 (326)
T 2y0a_A          159 IIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYE---  235 (326)
T ss_dssp             ECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCC---
T ss_pred             EEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCC---
Confidence            9999999876433 334567899999999999889999999999999999999999999876654433322211100   


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                 ....+....+..+.+|+.+||+.||.+|||+.++++.
T Consensus       236 -----------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          236 -----------FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             -----------CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             -----------cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                       0000112345788999999999999999999999973

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.2e-44  Score=355.90  Aligned_cols=252  Identities=18%  Similarity=0.206  Sum_probs=200.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|....   ..+.+++|+..........+.+.+|+.+++.++||||+++++++.+.  +..
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--~~~   80 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRV---TEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--NIQ   80 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECS--SEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECC---CCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecC--CeE
Confidence            4689999999999999999998654   34556677666554444557889999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++..   ...+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        81 ~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  154 (323)
T 3tki_A           81 YLFLEYCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV  154 (323)
T ss_dssp             EEEEECCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEEcCCCCcHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccce
Confidence            999999999999999843   346999999999999999999999999   99999999999999999999999999976


Q ss_pred             cCCC----CccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPET----DISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~----~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +...    ......+|+.|+|||++.+..+ +.++|||||||++|||++|+.||......... ...|...         
T Consensus       155 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~-~~~~~~~---------  224 (323)
T 3tki_A          155 FRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-YSDWKEK---------  224 (323)
T ss_dssp             CEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHH-HHHHHTT---------
T ss_pred             eccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHH-HHHHhcc---------
Confidence            5322    2235578999999999987775 77899999999999999999999765432211 1111100         


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           .........++..+.+|+.+||+.||.+|||+.|+++.
T Consensus       225 -----~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          225 -----KTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             -----CTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             -----cccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence                 00000123456788999999999999999999999875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=3.9e-44  Score=343.64  Aligned_cols=258  Identities=21%  Similarity=0.320  Sum_probs=209.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|.+.+     ..+++|+..... .....+.+.+|+.++++++||||+++++++.+.....
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   83 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQG-----NDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPH   83 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEETT-----EEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSS
T ss_pred             HHHhHHHHHhcCCCcceEEEEEECC-----eeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCC
Confidence            3578889999999999999999742     345566665543 3345577999999999999999999999998765578


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++|+|.+++... ....+++..+..++.|++.||.|||+++. .|+||||||+|||++.++.++|+|||++.
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~~-~i~H~dikp~Nil~~~~~~~~l~~~~~~~  161 (271)
T 3kmu_A           84 PTLITHWMPYGSLYNVLHEG-TNFVVDQSQAVKFALDMARGMAFLHTLEP-LIPRHALNSRSVMIDEDMTARISMADVKF  161 (271)
T ss_dssp             CEEEEECCTTCBHHHHHHSC-SSCCCCHHHHHHHHHHHHHHHHHHTTSSS-CCTTCCCSGGGEEECTTSCEEEEGGGSCC
T ss_pred             eEeeecccCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcCCC-ceecCCCccceEEEcCCcceeEEecccee
Confidence            89999999999999999753 23468999999999999999999999763 39999999999999999999999998875


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCC---cCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTP---KSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~---~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....   ....+|+.|+|||.+.+..++.   ++|||||||++|||++|+.||...........+...            
T Consensus       162 ~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~------------  226 (271)
T 3kmu_A          162 SFQS---PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALE------------  226 (271)
T ss_dssp             TTSC---TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHS------------
T ss_pred             eecc---cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhc------------
Confidence            5322   3456789999999998765544   799999999999999999999876654432221110            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                          .....++..++.++.+++.+||+.||.+|||+.++++.|+++.+
T Consensus       227 ----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          227 ----GLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             ----CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             ----CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence                11112244566889999999999999999999999999999865

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=7e-44  Score=357.84  Aligned_cols=255  Identities=16%  Similarity=0.208  Sum_probs=207.6

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|...+.||+|+||.||+|....   +...+++|+..... .....+.+.+|+.+++.++|||||++++++.+.  
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--  100 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKT---TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE--  100 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS--
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECC---CCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC--
Confidence            346789999999999999999998644   34566677665543 334457789999999999999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---CcEEEec
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---FSAKLSG  327 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~~vkl~D  327 (473)
                      +..|+||||+.+|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.+   +.+||+|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~D  174 (362)
T 2bdw_A          101 SFHYLVFDLVTGGELFEDIVA---REFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLAD  174 (362)
T ss_dssp             SEEEEEECCCCSCBHHHHHTT---CSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECC
T ss_pred             CEEEEEEecCCCCCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEee
Confidence            789999999999999999853   346899999999999999999999999   9999999999999865   4599999


Q ss_pred             cCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          328 YGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       328 FGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ||++....... .....+|+.|+|||++.+..++.++|||||||++|||++|.+||.+.........+......      
T Consensus       175 fG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~------  248 (362)
T 2bdw_A          175 FGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYD------  248 (362)
T ss_dssp             CTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC------
T ss_pred             cCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCC------
Confidence            99998765432 34567899999999999989999999999999999999999999876654433322211100      


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              ........++.++.+||.+||+.||.+|||+.++++.
T Consensus       249 --------~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          249 --------YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             --------CCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             --------CCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                    0000112456789999999999999999999999865

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=3.7e-44  Score=353.64  Aligned_cols=271  Identities=21%  Similarity=0.371  Sum_probs=199.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      ..++|...+.||+|+||.||+|....+......+++|+..... .....+.+.+|+++++.++||||+++++++......
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            3567999999999999999999865544333345555544332 345567899999999999999999999998765211


Q ss_pred             ----ceEEEEEeccCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          252 ----QRMLIYERLFHGSLDRLIYGRS---DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       252 ----~~~lV~E~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                          ..++||||+++|+|.+++....   ....+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+|
T Consensus       101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~~k  177 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVC  177 (323)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEE
T ss_pred             cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCCEE
Confidence                2389999999999999985432   2236899999999999999999999999   99999999999999999999


Q ss_pred             EeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||++........    ....+++.|+|||.+.+..++.++|||||||++|||++ |..||.+.........+.... 
T Consensus       178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~-  256 (323)
T 3qup_A          178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGN-  256 (323)
T ss_dssp             ECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-
T ss_pred             EeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCC-
Confidence            999999987644322    23345678999999999999999999999999999999 999998766544333221110 


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSS  463 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~  463 (473)
                                      ....+..++.++.+|+.+||+.||.+|||+.++++.|+++.......+
T Consensus       257 ----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~  304 (323)
T 3qup_A          257 ----------------RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLS  304 (323)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----
T ss_pred             ----------------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcC
Confidence                            011234456789999999999999999999999999999887665443

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.9e-44  Score=346.70  Aligned_cols=263  Identities=23%  Similarity=0.366  Sum_probs=211.1

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      .|...+.||+|+||+||+|.+.++......+++|+..........+.+.+|+.+++.++||||+++++++...+ ...++
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~~~  100 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPE-GLPHV  100 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS-SCCEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCC-CCcEE
Confidence            45566899999999999999766655555666666654444456678999999999999999999999987652 44589


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+.+|+|.+++..  ....+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++....
T Consensus       101 v~e~~~~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  175 (298)
T 3pls_A          101 LLPYMCHGDLLQFIRS--PQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDIL  175 (298)
T ss_dssp             EECCCTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred             EEecccCCCHHHHHhc--cccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence            9999999999999964  3456899999999999999999999999   9999999999999999999999999997654


Q ss_pred             CC------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcC-CCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          336 ET------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTG-RKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       336 ~~------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ..      ......++..|+|||.+.+..++.++|||||||++|||++| .+||...........+....          
T Consensus       176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~----------  245 (298)
T 3pls_A          176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGR----------  245 (298)
T ss_dssp             TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTC----------
T ss_pred             CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCC----------
Confidence            32      22334667899999999999999999999999999999995 55555544433332222111          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                             ....+..++..+.+++.+||+.||.+|||+.++++.|+++.+....
T Consensus       246 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~  291 (298)
T 3pls_A          246 -------RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG  291 (298)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred             -------CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence                   0111334557899999999999999999999999999998766543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.8e-44  Score=350.80  Aligned_cols=273  Identities=19%  Similarity=0.282  Sum_probs=209.4

Q ss_pred             cccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      +.|+..+.||+|+||.||+|.+.. +....+.+++|+............+.+|+.++..++||||+++++++...+...+
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            458888999999999999998643 3345677777776655445556789999999999999999999999987766779


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus       101 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKA  175 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECccccccc
Confidence            9999999999999999543  345999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc--ccc
Q 011995          334 IPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD--DCR  406 (473)
Q Consensus       334 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~--~~~  406 (473)
                      .....     .....+|..|+|||.+.+..++.++|||||||++|||++|..|+.........    ...+....  ...
T Consensus       176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~  251 (302)
T 4e5w_A          176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLK----MIGPTHGQMTVTR  251 (302)
T ss_dssp             CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHH----HHCSCCGGGHHHH
T ss_pred             ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhh----ccCCcccccCHHH
Confidence            65432     22345677899999999999999999999999999999999986532111100    00000000  000


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      +............+..++..+.+|+.+||+.||.+|||+.++++.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          252 LVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            11111111122234566789999999999999999999999999999875

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=3e-44  Score=353.98  Aligned_cols=276  Identities=21%  Similarity=0.289  Sum_probs=215.3

Q ss_pred             cccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          177 FFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      |+..+.||+|+||+||++.+.. +....+.+++|+............+.+|+++++.++||||+++++++.+.+...+++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            4888999999999999997643 334567777777765545556778999999999999999999999998866678999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+++|+|.+++...    .+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++....
T Consensus       113 v~e~~~~~~L~~~l~~~----~~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  185 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRH----SIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  185 (318)
T ss_dssp             EECCCTTCBHHHHGGGS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred             EEecccCCcHHHHHhhC----CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCcccccccc
Confidence            99999999999999543    4999999999999999999999999   9999999999999999999999999998765


Q ss_pred             CCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          336 ETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       336 ~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ...     .....++..|+|||.+.+..++.++|||||||++|||++|..||....... .....+...... ...+...
T Consensus       186 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~-~~~~~~~~~~~~-~~~~~~~  263 (318)
T 3lxp_A          186 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKF-LELIGIAQGQMT-VLRLTEL  263 (318)
T ss_dssp             TTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH-HHHHCSCCHHHH-HHHHHHH
T ss_pred             ccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhh-hhhhcccccchh-HHHHHHH
Confidence            432     123456778999999999899999999999999999999999997532211 111111000000 0011111


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .........+..++.++.+|+.+||+.||.+|||+.+|++.|+.+.++...
T Consensus       264 ~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~  314 (318)
T 3lxp_A          264 LERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG  314 (318)
T ss_dssp             HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred             HhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence            122222233556678999999999999999999999999999998766543

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=7.9e-44  Score=366.44  Aligned_cols=255  Identities=16%  Similarity=0.186  Sum_probs=206.8

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|+..+.||+|+||+||+|....   +++.+++|+..... .......+.+|+.+++.++|||||++++++.+.  
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~---~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~--   82 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVL---AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEE--   82 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETT---TTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECS--
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECC---CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEEC--
Confidence            346789999999999999999998543   34566666665443 233456789999999999999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC---CCCcEEEec
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKLSG  327 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~---~~~~vkl~D  327 (473)
                      +..|+||||+.+|+|.+.+...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++   .++.+||+|
T Consensus        83 ~~~~lv~E~~~gg~L~~~i~~~---~~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~D  156 (444)
T 3soa_A           83 GHHYLIFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLAD  156 (444)
T ss_dssp             SEEEEEECCCBCCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEcc
Confidence            7899999999999999998653   46999999999999999999999999   99999999999998   468899999


Q ss_pred             cCCCcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          328 YGCAGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       328 FGla~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ||++.......  .....+|+.|+|||++.+..++.++|||||||++|+|++|.+||.+.........+......     
T Consensus       157 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~-----  231 (444)
T 3soa_A          157 FGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYD-----  231 (444)
T ss_dssp             CSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-----
T ss_pred             CceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCC-----
Confidence            99998765432  24567899999999999989999999999999999999999999887655544333211100     


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                               ........++.++.+|+.+||+.||.+|||+.|+++.
T Consensus       232 ---------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          232 ---------FPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             ---------CCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ---------CCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence                     0001123456889999999999999999999999873

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=5.9e-44  Score=345.16  Aligned_cols=259  Identities=18%  Similarity=0.313  Sum_probs=209.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|.+.++......+++|+..........+.+.+|+.+++.++||||+++++++.+   +..
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   87 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE---EPT   87 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS---SSC
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC---CCC
Confidence            46899999999999999999987665555555666655544344566789999999999999999999999854   456


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        88 ~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  162 (281)
T 3cc6_A           88 WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRY  162 (281)
T ss_dssp             EEEEECCTTCBHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGC
T ss_pred             EEEEecCCCCCHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCcc
Confidence            8999999999999999642  346899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....   .....+++.|+|||.+.+..++.++|||||||++|||++ |+.||...........+....           
T Consensus       163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~-----------  231 (281)
T 3cc6_A          163 IEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGD-----------  231 (281)
T ss_dssp             C---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTC-----------
T ss_pred             cccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCC-----------
Confidence            64432   223355788999999999999999999999999999998 999997655444332221110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                            ....+..++..+.+++.+||..||.+|||+.++++.|+++..
T Consensus       232 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          232 ------RLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ------CCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence                  001133455789999999999999999999999999998754

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=347.81  Aligned_cols=251  Identities=18%  Similarity=0.243  Sum_probs=197.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-------------------------ChhhHhHHHHHH
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-------------------------SQGVKEFINDVN  228 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Ei~  228 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+......                         ....+.+.+|++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   88 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNEND---NTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIA   88 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTT---TEEEEEEEEECC-------------------------------CHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCC---CcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHH
Confidence            46899999999999999999986543   34555665543321                         112356899999


Q ss_pred             HHHhCCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeec
Q 011995          229 TLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYN  308 (473)
Q Consensus       229 ~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHr  308 (473)
                      +++.++||||+++++++.+......++||||+++++|.+++.    ...+++..+..++.||+.||+|||+++   |+||
T Consensus        89 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~  161 (298)
T 2zv2_A           89 ILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT----LKPLSEDQARFYFQDLIKGIEYLHYQK---IIHR  161 (298)
T ss_dssp             HHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC----SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECC
T ss_pred             HHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecc
Confidence            999999999999999998755578999999999999988762    346999999999999999999999999   9999


Q ss_pred             CCCCCceeeCCCCcEEEeccCCCcccCCCC--ccCcccccccCChhhhhcCC---CCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          309 EFSTANIQIDKDFSAKLSGYGCAGHIPETD--ISNSSVAAANLSVETLERGL---LTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       309 Dlkp~NILl~~~~~vkl~DFGla~~~~~~~--~~~~~~t~~y~aPE~~~~~~---~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      ||||+|||++.++.+||+|||++.......  .....+|+.|+|||.+.+..   ++.++|||||||++|||++|+.||.
T Consensus       162 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  241 (298)
T 2zv2_A          162 DIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFM  241 (298)
T ss_dssp             CCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             CCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence            999999999999999999999998765432  24457899999999997655   3778999999999999999999998


Q ss_pred             CCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..........+.....                .......++.++.+|+.+||+.||.+|||+.|+++
T Consensus       242 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          242 DERIMCLHSKIKSQAL----------------EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             CSSHHHHHHHHHHCCC----------------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CccHHHHHHHHhcccC----------------CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            7654433222211100                00001234578999999999999999999999975

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=6.4e-44  Score=372.66  Aligned_cols=260  Identities=18%  Similarity=0.309  Sum_probs=213.3

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|...+.||+|+||.||+|.+...   ...+++  |.+.......+.|.+|+.+|++++|||||+++++|...  ..
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~---~~~vav--K~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~--~~  290 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKY---SLTVAV--KTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PP  290 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGG---TEEEEE--EECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SS
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCC---CeEEEE--EEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecC--Cc
Confidence            356788889999999999999997542   233444  44444444578899999999999999999999999765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .+|||||+++|+|.+++... ....+++..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+++
T Consensus       291 ~~lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~  366 (495)
T 1opk_A          291 FYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSR  366 (495)
T ss_dssp             CEEEEECCTTCBHHHHHHHS-CTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEE
T ss_pred             EEEEEEccCCCCHHHHHHhc-CcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccce
Confidence            99999999999999999753 2456899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......   ....++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+..            
T Consensus       367 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~------------  434 (495)
T 1opk_A          367 LMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK------------  434 (495)
T ss_dssp             CCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHT------------
T ss_pred             eccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc------------
Confidence            7654332   22345678999999999999999999999999999999 9999987665443322211            


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                           ......+..++..+.+||.+||+.||.+|||+.+|++.|+.+....+
T Consensus       435 -----~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~~~  481 (495)
T 1opk_A          435 -----DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS  481 (495)
T ss_dssp             -----TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSSSC
T ss_pred             -----CCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhccc
Confidence                 11112244566889999999999999999999999999999875543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.9e-43  Score=348.19  Aligned_cols=269  Identities=17%  Similarity=0.249  Sum_probs=193.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|...   .+++.+++|+............+.+|+.+++.++||||+++++++..+  +..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~   78 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNK---TTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTE--NKL   78 (317)
T ss_dssp             ---------------CEEEEEECS---SSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCT--TEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEEC---CCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEEC--CeE
Confidence            467888999999999999999843   345666777776655455567889999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS---DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ++||||++ |+|.+++....   ....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+
T Consensus        79 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~  154 (317)
T 2pmi_A           79 TLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGL  154 (317)
T ss_dssp             EEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSS
T ss_pred             EEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCcc
Confidence            99999997 59998885421   2245899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc--
Q 011995          331 AGHIPET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC--  405 (473)
Q Consensus       331 a~~~~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--  405 (473)
                      +......  ......+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+....+...........  
T Consensus       155 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  234 (317)
T 2pmi_A          155 ARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWP  234 (317)
T ss_dssp             CEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCG
T ss_pred             ceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhh
Confidence            9876432  23445789999999999764 589999999999999999999999988776554433211100000000  


Q ss_pred             cccc--cccccc------------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSL--IMDPQL------------KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~--~~~~~l------------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ....  ...+.+            ........+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          235 SVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             GGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence            0000  000000            001112345789999999999999999999999874

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.5e-44  Score=355.23  Aligned_cols=263  Identities=12%  Similarity=0.084  Sum_probs=207.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|....   ..+.+++|+.....   ....+.+|+.+++.+ +||||+++++++...  +.
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~--~~   79 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLY---TNEYVAIKLEPMKS---RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCG--KY   79 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETT---TTEEEEEEEEETTC---SSCCHHHHHHHHHHHCSCTTSCCEEEEEEET--TE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECC---CCcEEEEEEecccc---chHHHHHHHHHHHHhhCCCCCCEEEEEEecC--Cc
Confidence            4679999999999999999998543   34566677665432   235688999999999 999999999998876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc-----EEEec
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS-----AKLSG  327 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~-----vkl~D  327 (473)
                      .++||||+ +++|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.     +||+|
T Consensus        80 ~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~D  153 (330)
T 2izr_A           80 NAMVLELL-GPSLEDLFDLC--DRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIID  153 (330)
T ss_dssp             EEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECC
T ss_pred             cEEEEEeC-CCCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEE
Confidence            99999999 99999999653  357999999999999999999999999   999999999999998887     99999


Q ss_pred             cCCCcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          328 YGCAGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       328 FGla~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      ||++..+....         .....+|+.|+|||++.+..++.++|||||||++|||++|..||.+..............
T Consensus       154 Fg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~  233 (330)
T 2izr_A          154 FALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIG  233 (330)
T ss_dssp             CTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHH
T ss_pred             cccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHH
Confidence            99998664332         235578999999999999999999999999999999999999998754332222111100


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ..     .... ....+    ....+ ++.+++..||..||.+||++.+|++.|+++..+...
T Consensus       234 ~~-----~~~~-~~~~~----~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~~  285 (330)
T 2izr_A          234 DT-----KRAT-PIEVL----CENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGY  285 (330)
T ss_dssp             HH-----HHHS-CHHHH----TTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             hh-----hccC-CHHHH----hccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence            00     0000 00000    11233 899999999999999999999999999988776543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.4e-44  Score=352.27  Aligned_cols=274  Identities=19%  Similarity=0.300  Sum_probs=219.3

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccc
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKL  241 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l  241 (473)
                      +...+.....++|...+.||+|+||.||+|.+.+  +....+.+++|+..........+.+.+|+.++.++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            4455555567899999999999999999998643  33456777777766554455567899999999999 79999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeec
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYN  308 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHr  308 (473)
                      ++++...+ ...++||||+++|+|.+++.....             ...+++..+..++.|++.||.|||+++   |+||
T Consensus        97 ~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~  172 (316)
T 2xir_A           97 LGACTKPG-GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHR  172 (316)
T ss_dssp             EEEECCTT-SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCS
T ss_pred             EEEEecCC-CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---cccc
Confidence            99987653 568999999999999999965432             123899999999999999999999999   9999


Q ss_pred             CCCCCceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCC
Q 011995          309 EFSTANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLD  383 (473)
Q Consensus       309 Dlkp~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~  383 (473)
                      ||||+|||++.++.+||+|||++........    ....+|+.|+|||.+.+..++.++|||||||++|||++ |..||.
T Consensus       173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  252 (316)
T 2xir_A          173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  252 (316)
T ss_dssp             CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999986643321    23456789999999999999999999999999999998 999997


Q ss_pred             CCChHHHHh-HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          384 SRHPKEERN-LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       384 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ......... .+...                 .....+...+..+.+++.+||+.||.+|||+.+|++.|+.+.+..
T Consensus       253 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  312 (316)
T 2xir_A          253 GVKIDEEFCRRLKEG-----------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  312 (316)
T ss_dssp             TCCCSHHHHHHHHHT-----------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhccC-----------------ccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            754332211 11100                 001123345678999999999999999999999999999987543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=5.7e-44  Score=369.24  Aligned_cols=258  Identities=23%  Similarity=0.395  Sum_probs=211.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|...+.||+|+||.||+|.+.++    ..+++|+  +.......+.|.+|+.+|+.++|||||++++++. .  +.
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~----~~vavK~--~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~--~~  256 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKH----TKVAVKT--MKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-K--EP  256 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTT----EEEEEEE--ECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-S--SS
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCc----cEEEEEE--ecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-C--Cc
Confidence            456888999999999999999997643    2344444  4434455788999999999999999999999985 2  67


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++|+|.+++... ....+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++
T Consensus       257 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~  332 (454)
T 1qcf_A          257 IYIITEFMAKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLAR  332 (454)
T ss_dssp             CEEEECCCTTCBHHHHHHSH-HHHTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGG
T ss_pred             cEEEEeecCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCce
Confidence            89999999999999999643 2235889999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......   ....++..|+|||++....++.++|||||||++|||++ |+.||.+....+....+...           
T Consensus       333 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~-----------  401 (454)
T 1qcf_A          333 VIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG-----------  401 (454)
T ss_dssp             GBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHT-----------
T ss_pred             EcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-----------
Confidence            7644321   23345678999999999999999999999999999999 99999877655433322211           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                            .....+..++.++.+||.+||..||.+|||+.+|++.|+.+.....
T Consensus       402 ------~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~  447 (454)
T 1qcf_A          402 ------YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATE  447 (454)
T ss_dssp             ------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSC
T ss_pred             ------CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhccc
Confidence                  0011234566889999999999999999999999999999876543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-44  Score=351.98  Aligned_cols=259  Identities=19%  Similarity=0.338  Sum_probs=206.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|.+..+.. ...+++++.............+.+|+.++..++||||+++++++...   .
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~---~   90 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS---T   90 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS---S
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC---C
Confidence            3679999999999999999999754432 33344455554444555678899999999999999999999999763   4


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++|+||+.+|+|.+++...  ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        91 ~~~v~~~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~  165 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             EEEEECCCSSCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC--
T ss_pred             ceEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCccee
Confidence            88999999999999999653  346999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          333 HIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       333 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ......    .....+++.|+|||.+.+..++.++|||||||++|||++ |..||...........+....         
T Consensus       166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~---------  236 (327)
T 3lzb_A          166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE---------  236 (327)
T ss_dssp             --------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC---------
T ss_pred             EccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCC---------
Confidence            764322    123345678999999999999999999999999999999 999998766554333322111         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                              ....+..++.++.+|+.+||+.||.+|||+.|+++.|+++..
T Consensus       237 --------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          237 --------RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             --------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             --------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence                    111234456789999999999999999999999999998764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2e-43  Score=350.32  Aligned_cols=265  Identities=19%  Similarity=0.338  Sum_probs=213.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCC----CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDD----ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~  248 (473)
                      .++|...+.||+|+||.||+|...+.    ......+++|+............+.+|++++..+ +||||+++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            46899999999999999999987532    2344555566555444445567899999999999 999999999999765


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSD-------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                        +..++||||+++|+|.+++.....             ...+++..+..++.||+.||.|||+++   |+||||||+||
T Consensus       114 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NI  188 (334)
T 2pvf_A          114 --GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNV  188 (334)
T ss_dssp             --SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGE
T ss_pred             --CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceE
Confidence              789999999999999999975431             235899999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHH
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEE  390 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~  390 (473)
                      |++.++.+||+|||++.......    .....+++.|+|||++.+..++.++|||||||++|||++ |..||.+....+.
T Consensus       189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~  268 (334)
T 2pvf_A          189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEEL  268 (334)
T ss_dssp             EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH
T ss_pred             EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHH
Confidence            99999999999999998765432    223355788999999998889999999999999999999 9999987665443


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                      ...+....                 ....+..++..+.+++.+||+.||.+|||+.+|++.|+++.....
T Consensus       269 ~~~~~~~~-----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~  321 (334)
T 2pvf_A          269 FKLLKEGH-----------------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT  321 (334)
T ss_dssp             HHHHHHTC-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCC-----------------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence            32221110                 011234456789999999999999999999999999999876543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=8.8e-44  Score=351.36  Aligned_cols=253  Identities=17%  Similarity=0.249  Sum_probs=201.2

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--  250 (473)
                      ..++|+..+.||+|+||.||+|+...   .++.+++|+..........+.+.+|+.+|++++|||||++++++.+...  
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~---~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   80 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKV---DDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEK   80 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETT---TCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcC---CCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccch
Confidence            45789999999999999999999653   3456677777665555667889999999999999999999998865421  


Q ss_pred             -----------------------------------------------------CceEEEEEeccCCChhhhhhcCCCCCC
Q 011995          251 -----------------------------------------------------DQRMLIYERLFHGSLDRLIYGRSDGPP  277 (473)
Q Consensus       251 -----------------------------------------------------~~~~lV~E~~~~gsL~~~l~~~~~~~~  277 (473)
                                                                           ...++||||+++|+|.+++........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~  160 (332)
T 3qd2_B           81 WQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED  160 (332)
T ss_dssp             HHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGG
T ss_pred             hhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccc
Confidence                                                                 138999999999999999977655556


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC--------------ccCcc
Q 011995          278 IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD--------------ISNSS  343 (473)
Q Consensus       278 l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~--------------~~~~~  343 (473)
                      ..+..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++.......              .....
T Consensus       161 ~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (332)
T 3qd2_B          161 REHGVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV  237 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence            788889999999999999999999   9999999999999999999999999998765432              23346


Q ss_pred             cccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHH
Q 011995          344 VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKA  423 (473)
Q Consensus       344 ~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  423 (473)
                      +|+.|+|||.+.+..++.++|||||||++|||++|..|+..     .........             .... .......
T Consensus       238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~-----~~~~~~~~~-------------~~~~-~~~~~~~  298 (332)
T 3qd2_B          238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME-----RVRIITDVR-------------NLKF-PLLFTQK  298 (332)
T ss_dssp             -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH-----HHHHHHHHH-------------TTCC-CHHHHHH
T ss_pred             CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH-----HHHHHHHhh-------------ccCC-CcccccC
Confidence            89999999999999999999999999999999998766421     111111000             0000 0012345


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          424 ARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       424 ~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +.++.+|+.+||+.||.+|||+.|+++
T Consensus       299 ~~~~~~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          299 YPQEHMMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             CHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred             ChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence            577899999999999999999999986

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-43  Score=349.35  Aligned_cols=265  Identities=18%  Similarity=0.320  Sum_probs=207.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCC-eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA-STSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|...+.||+|+||.||+|.+.... .....+++|+............+.+|+.++..++||||+++++++...  +..
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~  121 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY--KPM  121 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS--SSE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC--CCc
Confidence            46777899999999999999865432 234455566655444445566799999999999999999999998765  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++...  ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus       122 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          122 MIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             EEEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             EEEEeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchh
Confidence            9999999999999999643  356999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ......     ....++..|+|||.+.+..++.++|||||||++|||++ |..||......+....+...          
T Consensus       197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~----------  266 (333)
T 1mqb_A          197 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDG----------  266 (333)
T ss_dssp             --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT----------
T ss_pred             hccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCC----------
Confidence            643321     12244678999999999999999999999999999999 99999876554433222110          


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSS  463 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~  463 (473)
                             .....+..++..+.+++.+||+.||.+||++.+|++.|+++.......+
T Consensus       267 -------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~~  315 (333)
T 1mqb_A          267 -------FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLK  315 (333)
T ss_dssp             -------CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGGG
T ss_pred             -------CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhhh
Confidence                   0011133456789999999999999999999999999999876555433

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.9e-43  Score=364.91  Aligned_cols=254  Identities=20%  Similarity=0.332  Sum_probs=206.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|.+.+     ..+++|+....   ...+.|.+|+.+|++++|||||++++++.... ...
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~~-----~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-~~~  262 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYRG-----NKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-GGL  262 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT-----EEEEEEEESSC---TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTT-SCE
T ss_pred             hHHeEEEeeecCcCCeeEEEEEecC-----CeEEEEEeCCc---hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCC-Cce
Confidence            4678889999999999999998753     24455554432   25678999999999999999999999987652 478


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++... ....+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++.
T Consensus       263 ~iv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          263 YIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKE  338 (450)
T ss_dssp             EEEEECCTTCBHHHHHHHH-CTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEecCCCcHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCccc
Confidence            9999999999999999754 2334799999999999999999999999   99999999999999999999999999986


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... ....++..|+|||.+.+..++.++|||||||++|||++ |+.||......+....+..       +        
T Consensus       339 ~~~~~-~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~-------~--------  402 (450)
T 1k9a_A          339 ASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-------G--------  402 (450)
T ss_dssp             CC-------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHT-------T--------
T ss_pred             ccccc-cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc-------C--------
Confidence            53322 23356789999999999999999999999999999998 9999987654433222211       0        


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                        .....+..++..+.+||.+||+.||.+|||+.+|++.|+.+...
T Consensus       403 --~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          403 --YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             --CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence              11122445678899999999999999999999999999988643

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.3e-44  Score=360.01  Aligned_cols=248  Identities=19%  Similarity=0.264  Sum_probs=201.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||+|+...+   .+.+++|+.....  .......+.+|+.++..+ +||||+++++++.+.  
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~---~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~--   96 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKET---GDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTP--   96 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCC---CCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeC--
Confidence            57899999999999999999996543   4556666655321  223346688999999988 799999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+||||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+
T Consensus        97 ~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~  170 (353)
T 3txo_A           97 DRLFFVMEFVNGGDLMFHIQKS---RRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGM  170 (353)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccc
Confidence            7899999999999999999543   46999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++.....  .....++|+.|+|||++.+..++.++|||||||++|||++|+.||......+....+....          
T Consensus       171 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~----------  240 (353)
T 3txo_A          171 CKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDE----------  240 (353)
T ss_dssp             CBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC----------
T ss_pred             eeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCC----------
Confidence            9864322  3345578999999999998889999999999999999999999998876655443332111          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH------HHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM------RSIFE  450 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~------~eil~  450 (473)
                              ..++...+.++.+|+.+||+.||.+||++      .+|++
T Consensus       241 --------~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          241 --------VVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             --------CCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             --------CCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence                    11244456789999999999999999998      67765

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.1e-43  Score=354.99  Aligned_cols=254  Identities=17%  Similarity=0.253  Sum_probs=201.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC----CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN----PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~  249 (473)
                      .+.|+..+.||+|+||+||+|....+   .+.+++|+....    ......+.+.+|+.+++.++||||+++++++.+. 
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-   98 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRET---GQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD-   98 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCC---CCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-
Confidence            46799999999999999999986543   455666665432    1122457789999999999999999999999876 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc---EEE
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS---AKL  325 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~---vkl  325 (473)
                       +..|+||||+++|+|.+++.... .+..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.   +||
T Consensus        99 -~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl  174 (351)
T 3c0i_A           99 -GMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKL  174 (351)
T ss_dssp             -TEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEE
T ss_pred             -CEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEE
Confidence             78999999999999988875432 2346899999999999999999999999   999999999999986654   999


Q ss_pred             eccCCCcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          326 SGYGCAGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       326 ~DFGla~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      +|||++.......  .....+|+.|+|||++.+..++.++|||||||++|||++|..||.+........+......    
T Consensus       175 ~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i~~~~~~----  250 (351)
T 3c0i_A          175 GGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYK----  250 (351)
T ss_dssp             CCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTCCC----
T ss_pred             ecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCCCC----
Confidence            9999998765433  2345789999999999998999999999999999999999999987432111111110000    


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                             ..+..    ...++.++.+||.+||+.||.+|||+.++++
T Consensus       251 -------~~~~~----~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          251 -------MNPRQ----WSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             -------CCHHH----HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -------CCccc----cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                   00000    1134578999999999999999999999986

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.1e-43  Score=344.88  Aligned_cols=258  Identities=19%  Similarity=0.346  Sum_probs=196.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|.+.++      +++|+..... .....+.+.+|+.+++.++||||+++++++..   ..
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~~------vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~   93 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHGD------VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA---PQ   93 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSSE------EEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---SS
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcCc------eEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC---Cc
Confidence            45788899999999999999985432      4455555443 34456779999999999999999999997643   56


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..  ....+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        94 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  168 (289)
T 3og7_A           94 LAIVTQWCEGSSLYHHLHA--SETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLAT  168 (289)
T ss_dssp             CEEEEECCCEEEHHHHHTT--C---CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC---
T ss_pred             cEEEEEecCCCcHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceecc
Confidence            8999999999999999954  3456999999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCC----CccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          333 HIPET----DISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       333 ~~~~~----~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      .....    ......+|+.|+|||.+.   +..++.++|||||||++|||++|+.||.................      
T Consensus       169 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~------  242 (289)
T 3og7_A          169 EKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGS------  242 (289)
T ss_dssp             ---------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTS------
T ss_pred             ccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccc------
Confidence            65321    223456899999999986   56688899999999999999999999987654432211110000      


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                           ..+.+ ......++..+.+|+.+||..||.+|||+.+|++.|+++..
T Consensus       243 -----~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          243 -----LSPDL-SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             -----CCCCT-TSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             -----cCcch-hhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence                 00000 11233456889999999999999999999999999998865

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=3.2e-44  Score=355.58  Aligned_cols=264  Identities=20%  Similarity=0.300  Sum_probs=211.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCC--eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDA--STSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|...+.||+|+||.||+|......  ...+.+++++..........+.+.+|+.++..+ +||||+++++++...  
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~--  122 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG--  122 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC--
Confidence            468999999999999999999975433  234556666665444445567899999999999 899999999999765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCC-----------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRS-----------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      +..++||||+++|+|.+++....           ....+++..+..++.||+.||.|||+++   |+||||||+|||++.
T Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~  199 (333)
T 2i1m_A          123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTN  199 (333)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEG
T ss_pred             CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECC
Confidence            78999999999999999986421           1346899999999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHh
Q 011995          320 DFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLV  394 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~  394 (473)
                      ++.+||+|||++.......    .....+++.|+|||.+.+..++.++|||||||++|||++ |..||.+..........
T Consensus       200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~  279 (333)
T 2i1m_A          200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKL  279 (333)
T ss_dssp             GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHH
T ss_pred             CCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHH
Confidence            9999999999998654322    123455778999999999999999999999999999998 99999875433322111


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ..      .          ......+...+..+.+++.+||+.||.+|||+.+|++.|+++...
T Consensus       280 ~~------~----------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  327 (333)
T 2i1m_A          280 VK------D----------GYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE  327 (333)
T ss_dssp             HH------H----------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             Hh------c----------CCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence            00      0          001111333457899999999999999999999999999987653

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1e-43  Score=344.34  Aligned_cols=262  Identities=18%  Similarity=0.303  Sum_probs=215.4

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|...+.||+|+||.||+|.....   ...+++|+.  .......+.+.+|+.+++.++||||+++++++.+.  ..
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~   83 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKY---SLTVAVKTL--KEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PP   83 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGG---TEEEEEEEE--CSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SS
T ss_pred             cccceeEEeecCCCCceeEEEeEecCC---CEEEEEEec--CcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC--CC
Confidence            467899999999999999999986543   344445444  34445667899999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++... ....+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        84 ~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~  159 (288)
T 3kfa_A           84 FYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSR  159 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHC-CTTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGG
T ss_pred             EEEEEEcCCCCcHHHHHHhc-ccCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccce
Confidence            99999999999999999654 3456999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......   ....+++.|+|||.+.+..++.++||||||+++|+|++ |..||...........+...           
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~-----------  228 (288)
T 3kfa_A          160 LMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKD-----------  228 (288)
T ss_dssp             TSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTT-----------
T ss_pred             eccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcc-----------
Confidence            7654332   23345678999999999999999999999999999999 99999876654433322211           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS  462 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~  462 (473)
                            .....+..++..+.+|+.+||..||.+|||+.++++.|+.+......+
T Consensus       229 ------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~~~~  276 (288)
T 3kfa_A          229 ------YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSIS  276 (288)
T ss_dssp             ------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence                  111123455688999999999999999999999999999988765443

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-43  Score=349.38  Aligned_cols=247  Identities=18%  Similarity=0.252  Sum_probs=205.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||.||+|....+   ++.+++|+.....  .....+.+.+|+.++..++||||+++++++.+.  .
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~--~   79 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHN---GRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA--Q   79 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTT---CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS--S
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCC---CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeC--C
Confidence            46899999999999999999986543   4556666654321  123356778999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        80 ~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a  153 (318)
T 1fot_A           80 QIFMIMDYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFA  153 (318)
T ss_dssp             EEEEEECCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             EEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcc
Confidence            899999999999999999643   46899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ..... ......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+....             
T Consensus       154 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~-------------  219 (318)
T 1fot_A          154 KYVPD-VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAE-------------  219 (318)
T ss_dssp             EECSS-CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCC-------------
T ss_pred             eecCC-ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC-------------
Confidence            87643 2345678999999999999999999999999999999999999998766544333221110             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                           ..++...+.++.+++.+||..||.+||     ++++|++
T Consensus       220 -----~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          220 -----LRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             -----CCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             -----CCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence                 112445568899999999999999999     8888885

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=362.27  Aligned_cols=280  Identities=16%  Similarity=0.205  Sum_probs=215.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+..........+.+.+|++++++++||||+++++++...+....
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~   84 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKT---GDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHK   84 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCC---CcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCee
Confidence            35799999999999999999996543   345566665543333445778899999999999999999999987655688


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee----CCCCcEEEeccC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI----DKDFSAKLSGYG  329 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl----~~~~~vkl~DFG  329 (473)
                      ++||||+++|+|.+++........+++..+..++.||+.||+|||+.+   |+||||||+|||+    +.++.+||+|||
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG  161 (396)
T 4eut_A           85 VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFG  161 (396)
T ss_dssp             EEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGG
T ss_pred             EEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCC
Confidence            999999999999999965444445999999999999999999999999   9999999999999    778889999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhhc--------CCCCCcCCchHHHHHHHHHHcCCCCCCCCChH----HHHhHhhh
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLER--------GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK----EERNLVKW  396 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~~--------~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~----~~~~~~~~  396 (473)
                      ++....... .....+|+.|+|||++.+        ..++.++|||||||++|||++|+.||......    +....+..
T Consensus       162 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~  241 (396)
T 4eut_A          162 AARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT  241 (396)
T ss_dssp             GCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHH
T ss_pred             CceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhc
Confidence            998765443 345578999999999875        45788999999999999999999999643221    11111111


Q ss_pred             cccccc-------cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          397 SRPFLA-------DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       397 ~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ..+...       ....+.-..+......+.......+.+++.+||+.||++||++.++++.++++..+.
T Consensus       242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~~  311 (396)
T 4eut_A          242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRM  311 (396)
T ss_dssp             SCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTCE
T ss_pred             CCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhce
Confidence            110000       000000000111222345788899999999999999999999999999999887653

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.3e-43  Score=345.29  Aligned_cols=264  Identities=13%  Similarity=0.113  Sum_probs=208.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+....   .....+.+|+.++..+ +|+|++++++++...  ..
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~---~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~--~~   80 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLN---NQQVAIKFEPRR---SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEG--LH   80 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTT---TEEEEEEEEECC---TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEET--TE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCC---CcEEEEEEeccC---CccHHHHHHHHHHHHHhcCCCCCeEEeecCCC--ce
Confidence            45799999999999999999985433   355666655432   3345788999999999 899999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc-----EEEec
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS-----AKLSG  327 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~-----vkl~D  327 (473)
                      .++||||+ +++|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.     +||+|
T Consensus        81 ~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~D  154 (298)
T 1csn_A           81 NVLVIDLL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVD  154 (298)
T ss_dssp             EEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECC
T ss_pred             eEEEEEec-CCCHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEE
Confidence            99999999 99999999653  346999999999999999999999999   999999999999987766     99999


Q ss_pred             cCCCcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          328 YGCAGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       328 FGla~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      ||++.......         .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||................
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  234 (298)
T 1csn_A          155 FGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG  234 (298)
T ss_dssp             CTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHH
T ss_pred             CccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHH
Confidence            99998664332         234568899999999999999999999999999999999999998754322211111000


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ...... ..     +.    ....++.++.+++.+||+.||.+||++.+|++.|+++..+...
T Consensus       235 ~~~~~~-~~-----~~----~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~  287 (298)
T 1csn_A          235 EKKQST-PL-----RE----LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT  287 (298)
T ss_dssp             HHHHHS-CH-----HH----HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             hhccCc-cH-----HH----HHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence            000000 00     00    0123457899999999999999999999999999998876554

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.1e-43  Score=349.40  Aligned_cols=251  Identities=18%  Similarity=0.211  Sum_probs=197.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||++....+...++.+++|+.....   .......+.+|+.+|+.++||||+++++++...  
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--   93 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG--   93 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS--
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC--
Confidence            468999999999999999999875444455667777665432   223446688999999999999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..|+||||+++|+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~  167 (327)
T 3a62_A           94 GKLYLILEYLSGGELFMQLERE---GIFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGL  167 (327)
T ss_dssp             SCEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSC
T ss_pred             CEEEEEEeCCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCc
Confidence            7899999999999999999542   35899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +......  ......+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+....          
T Consensus       168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~----------  237 (327)
T 3a62_A          168 CKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCK----------  237 (327)
T ss_dssp             C----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC----------
T ss_pred             ccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCC----------
Confidence            8764322  2344578999999999999899999999999999999999999998766544332221110          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                              ..++...+.++.+|+.+||..||.+||     ++.++++
T Consensus       238 --------~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          238 --------LNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             --------CCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             --------CCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence                    012344568899999999999999999     7788876

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=8.9e-44  Score=350.56  Aligned_cols=267  Identities=20%  Similarity=0.330  Sum_probs=213.9

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHA  246 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~  246 (473)
                      +.....++|...+.||+|+||.||+|...+  .....+.+++|+............+.+|+.+++.++||||+++++++.
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   98 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS   98 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence            334456789999999999999999998542  123445555665544334445567899999999999999999999987


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCC-------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRS-------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~-------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~  319 (473)
                      ..  +..++||||+++|+|.+++....       ....+++..+..++.||+.||.|||+++   |+||||||+|||++.
T Consensus        99 ~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~  173 (322)
T 1p4o_A           99 QG--QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAE  173 (322)
T ss_dssp             SS--SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECT
T ss_pred             cC--CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcC
Confidence            65  78899999999999999986421       1245799999999999999999999999   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHh
Q 011995          320 DFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLV  394 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~  394 (473)
                      ++.+||+|||++........    ....+++.|+|||.+.+..++.++|||||||++|||++ |..||...........+
T Consensus       174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~  253 (322)
T 1p4o_A          174 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV  253 (322)
T ss_dssp             TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHH
T ss_pred             CCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHH
Confidence            99999999999976643321    23355788999999999999999999999999999999 89999876654433222


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      ....                 ....+..++..+.+++.+||+.||.+|||+.++++.|+++..
T Consensus       254 ~~~~-----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          254 MEGG-----------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             HTTC-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HcCC-----------------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            1100                 001233556789999999999999999999999999998754

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.3e-43  Score=377.26  Aligned_cols=254  Identities=16%  Similarity=0.271  Sum_probs=204.8

Q ss_pred             ceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEecc
Q 011995          182 CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLF  261 (473)
Q Consensus       182 ~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~~~  261 (473)
                      .||+|+||.||+|.+.... ....+++|+.+........+.|.+|+++|+.++|||||++++++..   +.++|||||++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~---~~~~lv~E~~~  418 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRK-KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA---EALMLVMEMAG  418 (613)
T ss_dssp             EEEECSSSEEEEEEEECSS-CEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES---SSEEEEEECCT
T ss_pred             EEecCCCcEEEEEEEecCC-CcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc---CCeEEEEEeCC
Confidence            7999999999999875332 2344555555444445567889999999999999999999999865   46899999999


Q ss_pred             CCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc--
Q 011995          262 HGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI--  339 (473)
Q Consensus       262 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~--  339 (473)
                      +|+|.+++..  ....+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.......  
T Consensus       419 ~g~L~~~l~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~  493 (613)
T 2ozo_A          419 GGPLHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYY  493 (613)
T ss_dssp             TCBHHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC------
T ss_pred             CCcHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCcee
Confidence            9999999954  3456999999999999999999999999   99999999999999999999999999987643321  


Q ss_pred             ---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccccc
Q 011995          340 ---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL  415 (473)
Q Consensus       340 ---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  415 (473)
                         ....+++.|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+...                 .
T Consensus       494 ~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~-----------------~  556 (613)
T 2ozo_A          494 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG-----------------K  556 (613)
T ss_dssp             --------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTT-----------------C
T ss_pred             eeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC-----------------C
Confidence               12234578999999999999999999999999999998 99999887655543333211                 0


Q ss_pred             CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       416 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ...++..++.++.+||.+||..||++||++.+|++.|+.+....+.
T Consensus       557 ~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~  602 (613)
T 2ozo_A          557 RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS  602 (613)
T ss_dssp             CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence            1123445678899999999999999999999999999987655443

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3.1e-43  Score=337.07  Aligned_cols=254  Identities=19%  Similarity=0.320  Sum_probs=208.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||.||+|...++    ..+++|+.  .......+.+.+|++++..++||||+++++++...  +..+
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~----~~vaiK~~--~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   79 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNK----DKVAIKTI--REGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ--APIC   79 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTT----EEEEEEEE--CTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSS--SSCE
T ss_pred             hheeeeeEecCCCceeEEEEEecCC----CeEEEEEc--cccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccC--CCeE
Confidence            5788899999999999999997543    23444444  33334457899999999999999999999999765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++...
T Consensus        80 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~  154 (267)
T 3t9t_A           80 LVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV  154 (267)
T ss_dssp             EEECCCTTCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGB
T ss_pred             EEEeCCCCCcHHHHHhhC--cccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEccccccccc
Confidence            999999999999999653  346899999999999999999999999   999999999999999999999999999866


Q ss_pred             CCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....   .....++..|+|||.+.+..++.++||||||+++|||++ |..||...........+....            
T Consensus       155 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~------------  222 (267)
T 3t9t_A          155 LDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF------------  222 (267)
T ss_dssp             CCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTC------------
T ss_pred             ccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCC------------
Confidence            4322   223455678999999999999999999999999999999 899998766544332221100            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                           ....+...+..+.+++.+||+.||.+|||+.++++.|+++.++
T Consensus       223 -----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          223 -----RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             -----CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             -----cCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                 0111334457899999999999999999999999999998754

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=5.5e-43  Score=343.67  Aligned_cols=268  Identities=19%  Similarity=0.347  Sum_probs=207.6

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|...+.||+|+||.||+|.+..+......+++|+..... .....+.+.+|+.++++++||||+++++++...+.
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  110 (313)
T 3brb_A           31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS  110 (313)
T ss_dssp             CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred             cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence            34577889999999999999999876655566666677665443 33445779999999999999999999999876532


Q ss_pred             C---ceEEEEEeccCCChhhhhhcC---CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          251 D---QRMLIYERLFHGSLDRLIYGR---SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       251 ~---~~~lV~E~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      .   ..++||||+++|+|.+++...   .....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+|
T Consensus       111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~k  187 (313)
T 3brb_A          111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVC  187 (313)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCEE
T ss_pred             cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEE
Confidence            2   469999999999999998432   23457999999999999999999999999   99999999999999999999


Q ss_pred             EeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||++.......    .....+++.|+|||.+.+..++.++|||||||++|||++ |..||...........+.... 
T Consensus       188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-  266 (313)
T 3brb_A          188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGH-  266 (313)
T ss_dssp             ECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC-
T ss_pred             EeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCC-
Confidence            99999998664332    123355778999999999999999999999999999999 999998765544332221100 


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                                      ....+..++..+.+++.+||..||.+|||+.+|++.|+++....
T Consensus       267 ----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l  310 (313)
T 3brb_A          267 ----------------RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL  310 (313)
T ss_dssp             ----------------CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             ----------------CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence                            01123445678999999999999999999999999999987654

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=7.9e-44  Score=362.21  Aligned_cols=251  Identities=15%  Similarity=0.230  Sum_probs=190.9

Q ss_pred             hcccccC-cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHh-CCCCCcccceeeeec--CC
Q 011995          174 CHNFFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLAS-LQHPNLCKLLGFHAR--DG  249 (473)
Q Consensus       174 ~~~f~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~-l~HpnIv~l~g~~~~--~~  249 (473)
                      .++|... +.||+|+||+||+|....   +.+.+++|+...      ...+.+|++++.+ .+||||+++++++..  .+
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~---~~~~vAiK~~~~------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~  130 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKR---TQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAG  130 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred             cccceeccceeeeccCeEEEEEEECC---CCCEEEEEEeCc------chhHHHHHHHHHHhcCCCCcceEeEEEeecccC
Confidence            4567665 689999999999998654   345556665541      2567789988754 589999999998864  22


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEEe
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKLS  326 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl~  326 (473)
                      ...+||||||+++|+|.+++... ....+++..+..|+.||+.||.|||+++   |+||||||+|||++.   ++.+||+
T Consensus       131 ~~~~~lv~E~~~gg~L~~~l~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~  206 (400)
T 1nxk_A          131 RKCLLIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLT  206 (400)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEEC
T ss_pred             CcEEEEEEEeCCCCcHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEE
Confidence            36789999999999999999653 2346999999999999999999999999   999999999999997   7899999


Q ss_pred             ccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH----HhHhhhccccc
Q 011995          327 GYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE----RNLVKWSRPFL  401 (473)
Q Consensus       327 DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~----~~~~~~~~~~~  401 (473)
                      |||+++..... .....++|+.|+|||++.+..++.++|||||||++|||++|..||........    ...+....   
T Consensus       207 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~---  283 (400)
T 1nxk_A          207 DFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ---  283 (400)
T ss_dssp             CCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTC---
T ss_pred             ecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCc---
Confidence            99999876433 23456789999999999999999999999999999999999999976543210    11111000   


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                 ..+.......++.++.+||.+||+.||.+|||+.+|++.
T Consensus       284 -----------~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          284 -----------YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             -----------CCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             -----------ccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                       000001123456889999999999999999999999985

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=4.5e-43  Score=340.97  Aligned_cols=265  Identities=15%  Similarity=0.185  Sum_probs=200.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||+||+|....+   .+.+++|+..... .......+.+|+.++++++||||+++++++.++  +..
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   76 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRET---HEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--KKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTT---CCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--TEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCC---CceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC--CEE
Confidence            5789999999999999999986543   4556677666543 334457788999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++ +|.+.+..  ....+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        77 ~lv~e~~~~-~l~~~~~~--~~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~  150 (292)
T 3o0g_A           77 TLVFEFCDQ-DLKKYFDS--CNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             EEEEECCSE-EHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEecCCC-CHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeccccee
Confidence            999999975 66665543  2356999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCC-CCCChHHHHhHhhhcccccccc--ccc
Q 011995          334 IPET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNL-DSRHPKEERNLVKWSRPFLADD--CRL  407 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~-~~~~~~~~~~~~~~~~~~~~~~--~~~  407 (473)
                      ....  ......+|+.|+|||++.+.. ++.++|||||||++|||++|..|| ...........+..........  ...
T Consensus       151 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  230 (292)
T 3o0g_A          151 FGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSM  230 (292)
T ss_dssp             CCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTG
T ss_pred             cCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhh
Confidence            6432  234457799999999997766 899999999999999999888775 4433333222221100000000  000


Q ss_pred             cccc---------ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          408 SLIM---------DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       408 ~~~~---------~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ....         ............+.++.+|+.+||+.||++|||++|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          231 TKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             GGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            0000         000011123356788999999999999999999999986

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2e-43  Score=357.84  Aligned_cols=252  Identities=17%  Similarity=0.269  Sum_probs=197.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||+|+...+   .+.+++|+....  ........+.+|..++.++ +|||||++++++.+.  
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~---~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~--  125 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKT---DRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE--  125 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECS--
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCC---CCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEEC--
Confidence            46899999999999999999997654   355666666543  2333446688999999887 899999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+||||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+
T Consensus       126 ~~~~lV~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGl  199 (396)
T 4dc2_A          126 SRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGM  199 (396)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CEEEEEEEcCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecce
Confidence            7899999999999999998543   46999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccC--CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIP--ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~--~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++...  .......++|+.|+|||++.+..++.++|||||||++|||++|+.||.............       ......
T Consensus       200 a~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~-------~~~~~~  272 (396)
T 4dc2_A          200 CKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT-------EDYLFQ  272 (396)
T ss_dssp             CBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CC-------HHHHHH
T ss_pred             eeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhh-------HHHHHH
Confidence            98632  223455689999999999999999999999999999999999999996432211100000       000000


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                      .+...  ...++...+.++.+||.+||+.||.+||++
T Consensus       273 ~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          273 VILEK--QIRIPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             HHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             HHhcc--ccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence            00011  112355567889999999999999999996

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.8e-43  Score=352.72  Aligned_cols=279  Identities=19%  Similarity=0.237  Sum_probs=212.6

Q ss_pred             CCCCcCCCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC----
Q 011995          159 TGTLRNFPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ----  234 (473)
Q Consensus       159 ~~~~~~~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~----  234 (473)
                      ......+++.+.....++|.+.+.||+|+||+||+|....+   .+.+++|+..  ........+..|+.++..+.    
T Consensus        19 ~~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~--~~~~~~~~~~~e~~~l~~l~~~~~   93 (360)
T 3llt_A           19 DDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDN---KKYYAVKVVR--NIKKYTRSAKIEADILKKIQNDDI   93 (360)
T ss_dssp             -CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEC--SCHHHHHHHHHHHHHHHHTCCCST
T ss_pred             CccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCC---CeEEEEEEec--cchhhhhhhHHHHHHHHHhcccCC
Confidence            44455566666666788999999999999999999996543   3445555543  33445567888999999996    


Q ss_pred             -CCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCC
Q 011995          235 -HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTA  313 (473)
Q Consensus       235 -HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~  313 (473)
                       ||||+++++++...  +..++||||+ +++|.+++.... ...+++..+..++.||+.||+|||+++   |+||||||+
T Consensus        94 ~h~~iv~~~~~~~~~--~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~  166 (360)
T 3llt_A           94 NNNNIVKYHGKFMYY--DHMCLIFEPL-GPSLYEIITRNN-YNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPE  166 (360)
T ss_dssp             TGGGBCCEEEEEEET--TEEEEEECCC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGG
T ss_pred             CCCCeecccceeeEC--CeeEEEEcCC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcc
Confidence             99999999999876  7899999999 899999997543 345999999999999999999999999   999999999


Q ss_pred             ceeeCC-------------------------CCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHH
Q 011995          314 NIQIDK-------------------------DFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSF  368 (473)
Q Consensus       314 NILl~~-------------------------~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSl  368 (473)
                      |||++.                         ++.+||+|||++..... ......+|+.|+|||++.+..++.++|||||
T Consensus       167 NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  245 (360)
T 3llt_A          167 NILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD-YHGSIINTRQYRAPEVILNLGWDVSSDMWSF  245 (360)
T ss_dssp             GEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS-CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHH
T ss_pred             cEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCC-CCcCccCcccccCcHHHcCCCCCCccchHHH
Confidence            999975                         78999999999986543 2345678999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc--------ccccccccccCCCCC--------------------
Q 011995          369 GIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC--------RLSLIMDPQLKGRFP--------------------  420 (473)
Q Consensus       369 Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~--------------------  420 (473)
                      ||++|||++|+.||......+....+...........        .........+...++                    
T Consensus       246 G~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  325 (360)
T 3llt_A          246 GCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYK  325 (360)
T ss_dssp             HHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccc
Confidence            9999999999999988766554433322111100000        000000000000000                    


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          421 LKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       421 ~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ......+.+|+.+||+.||.+|||+.|+|+
T Consensus       326 ~~~~~~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          326 IIKHELFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             HCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            111267889999999999999999999985

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.7e-43  Score=342.82  Aligned_cols=257  Identities=20%  Similarity=0.343  Sum_probs=202.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChh------hHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG------VKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      .++|+..+.||+|+||.||+|....+   .+.+++|+.........      .+.+.+|+.++++++||||+++++++.+
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   94 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKD---KSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN   94 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTT---CCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT
T ss_pred             hccceehhccccCCceeEEEEEEcCC---ceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC
Confidence            36788899999999999999996543   34455665544322211      1678999999999999999999999854


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc-----
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS-----  322 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~-----  322 (473)
                      .    .++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++. +|+||||||+|||++.++.     
T Consensus        95 ~----~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~~-~ivH~dikp~Nil~~~~~~~~~~~  167 (287)
T 4f0f_A           95 P----PRMVMEFVPCGDLYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVC  167 (287)
T ss_dssp             T----TEEEEECCTTCBHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHTSSS-CCBCSCCSGGGEEESCCCTTCSCC
T ss_pred             C----CeEEEEecCCCCHHHHHhcc--cCCccHHHHHHHHHHHHHHHHHHHhCCC-CeecCCCCcceEEEeccCCCCcee
Confidence            3    37999999999999988643  4579999999999999999999999873 3999999999999988776     


Q ss_pred             EEEeccCCCcccCCCCccCcccccccCChhhhh--cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          323 AKLSGYGCAGHIPETDISNSSVAAANLSVETLE--RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~--~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      +||+|||++..... ......+|+.|+|||.+.  ...++.++|||||||++|||++|+.||..............    
T Consensus       168 ~kl~Dfg~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~----  242 (287)
T 4f0f_A          168 AKVADFGLSQQSVH-SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMI----  242 (287)
T ss_dssp             EEECCCTTCBCCSS-CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHH----
T ss_pred             EEeCCCCccccccc-cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHH----
Confidence            99999999975533 334567899999999983  44578999999999999999999999976543332111110    


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                                ........++..++..+.+++.+||+.||.+|||+.+|++.|+++
T Consensus       243 ----------~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          243 ----------REEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             ----------HHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             ----------hccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence                      011111223445668899999999999999999999999999875

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.7e-43  Score=353.43  Aligned_cols=247  Identities=14%  Similarity=0.189  Sum_probs=205.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+.....  .....+.+.+|+.+|..++||||+++++++.+.  .
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~  114 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKES---GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN--S  114 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTT---CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS--S
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCC---CCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC--C
Confidence            36899999999999999999996543   3455666654321  223456788999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       115 ~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a  188 (350)
T 1rdq_E          115 NLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFA  188 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccc
Confidence            899999999999999999643   35899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ...... .....+|+.|+|||++.+..++.++|||||||++|||++|..||...........+....             
T Consensus       189 ~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~-------------  254 (350)
T 1rdq_E          189 KRVKGR-TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK-------------  254 (350)
T ss_dssp             EECSSC-BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-------------
T ss_pred             eeccCC-cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCC-------------
Confidence            876433 345678999999999999999999999999999999999999998766554433222110             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFE  450 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~  450 (473)
                           ..++...+.++.++|.+||+.||.+||+     +++|++
T Consensus       255 -----~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          255 -----VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             -----CCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             -----CCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence                 1124455688999999999999999998     888875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=358.46  Aligned_cols=251  Identities=16%  Similarity=0.264  Sum_probs=203.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|.+.+.||+|+||.||+|....+   .+.+++|+.....  .......+.+|+.+|..++|||||++++++.+.  +
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~---~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~--~   88 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDT---KKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDE--E   88 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTT---CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--S
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCC---CCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC--C
Confidence            36799999999999999999986543   4556666654321  223456788999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+||||+.+|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+||||+.++.+||+|||++
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~---~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a  162 (384)
T 4fr4_A           89 DMFMVVDLLLGGDLRYHLQQ---NVHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIA  162 (384)
T ss_dssp             EEEEEECCCTTEEHHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEEecCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEecccee
Confidence            89999999999999999954   346999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC-CccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          332 GHIPET-DISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       332 ~~~~~~-~~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ...... ......+|+.|+|||++.+   ..++.++|||||||++|||++|+.||.................        
T Consensus       163 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~--------  234 (384)
T 4fr4_A          163 AMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFET--------  234 (384)
T ss_dssp             EECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHH--------
T ss_pred             eeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhh--------
Confidence            876443 3456689999999999964   4589999999999999999999999976443322222211000        


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-HHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-MRSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~eil~  450 (473)
                             ....++..++..+.+||.+||+.||.+||+ +.+|++
T Consensus       235 -------~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          235 -------TVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             -------CCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             -------cccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence                   001234456688999999999999999998 777664

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=2.9e-43  Score=356.13  Aligned_cols=253  Identities=19%  Similarity=0.227  Sum_probs=205.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+.... .......+.+|+.+|..++||||+++++++.+.  ...
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~---~~~~a~K~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--~~~  123 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKAT---GRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK--YEM  123 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS--SEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCC---CCEEEEEEeccc-chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeC--CEE
Confidence            56899999999999999999986543   344555555432 223456789999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC--CCcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK--DFSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~--~~~vkl~DFGla  331 (473)
                      ++||||+++|+|.+++..  ....+++..+..++.||+.||+|||+++   |+||||||+|||++.  ++.+||+|||++
T Consensus       124 ~lv~E~~~gg~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a  198 (387)
T 1kob_A          124 VLILEFLSGGELFDRIAA--EDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLA  198 (387)
T ss_dssp             EEEEECCCCCBHHHHTTC--TTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTC
T ss_pred             EEEEEcCCCCcHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccc
Confidence            999999999999999853  2346999999999999999999999999   999999999999974  478999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....... .....+|+.|+|||++.+..++.++|||||||++|||++|..||.+.........+.....           
T Consensus       199 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~-----------  267 (387)
T 1kob_A          199 TKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW-----------  267 (387)
T ss_dssp             EECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCC-----------
T ss_pred             eecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC-----------
Confidence            8775443 2344789999999999998999999999999999999999999988765443332221100           


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .........++.++.+||.+||+.||.+|||+.++++.
T Consensus       268 ---~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          268 ---EFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             ---CCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ---CCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence               01111123456889999999999999999999999974

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=2.3e-43  Score=364.43  Aligned_cols=257  Identities=21%  Similarity=0.374  Sum_probs=205.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|.+.++.    .  +++|.+.......+.|.+|+.+|++++||||+++++++..   +..
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~----~--vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---~~~  253 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNGTT----R--VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---EPI  253 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTE----E--EEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---SSC
T ss_pred             hhHceeeeeecCCCCeEEEEEEECCCc----e--EEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC---Cce
Confidence            467888899999999999999986532    2  3444444434456789999999999999999999999854   568


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++... .+..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++.
T Consensus       254 ~iv~e~~~~gsL~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~  329 (452)
T 1fmk_A          254 YIVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARL  329 (452)
T ss_dssp             EEEECCCTTCBHHHHHSHH-HHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred             EEEehhhcCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCcccee
Confidence            9999999999999999532 2345899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......   ....++..|+|||.+.+..++.++|||||||++|||++ |+.||.+....+....+...            
T Consensus       330 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~------------  397 (452)
T 1fmk_A          330 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG------------  397 (452)
T ss_dssp             -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT------------
T ss_pred             cCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC------------
Confidence            654322   22345678999999999999999999999999999999 99999887655433322211            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                           .....+..++..+.+||.+||+.||++|||+.+|++.|+.+.....
T Consensus       398 -----~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~  443 (452)
T 1fmk_A          398 -----YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  443 (452)
T ss_dssp             -----CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence                 0111244566889999999999999999999999999999875543

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-43  Score=343.80  Aligned_cols=255  Identities=23%  Similarity=0.380  Sum_probs=197.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||+|.+.+     +.+++|+  +. .....+.+.+|+.++++++||||+++++++.    +..+
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~~-----~~vavK~--~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----~~~~   75 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWRA-----KDVAIKQ--IE-SESERKAFIVELRQLSRVNHPNIVKLYGACL----NPVC   75 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETT-----EEEEEEE--CS-STTHHHHHHHHHHHHHHCCCTTBCCEEEBCT----TTTE
T ss_pred             hHeeeeeEeecCCCceEEEEEECC-----eeEEEEE--ec-ChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc----CCcE
Confidence            578889999999999999998653     3334443  33 2345678999999999999999999999875    3479


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh---cCCCceeecCCCCCceeeCCCCc-EEEeccCC
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE---EGPFQAMYNEFSTANIQIDKDFS-AKLSGYGC  330 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~---~~~~~ivHrDlkp~NILl~~~~~-vkl~DFGl  330 (473)
                      +||||+++|+|.+++........+++..+..++.|++.||+|||+   ++   |+||||||+|||++.++. +||+|||+
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~---ivH~dlkp~NIll~~~~~~~kl~Dfg~  152 (307)
T 2eva_A           76 LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA---LIHRDLKPPNLLLVAGGTVLKICDFGT  152 (307)
T ss_dssp             EEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSC---CCCCCCSGGGEEEETTTTEEEECCCCC
T ss_pred             EEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCC---eecCCCChhHEEEeCCCCEEEEccccc
Confidence            999999999999999765444458899999999999999999999   66   999999999999998876 79999999


Q ss_pred             CcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          331 AGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       331 a~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      +...... .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||.........  +.|...   ..      
T Consensus       153 ~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~--~~~~~~---~~------  220 (307)
T 2eva_A          153 ACDIQTH-MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR--IMWAVH---NG------  220 (307)
T ss_dssp             -------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHH--HHHHHH---TT------
T ss_pred             ccccccc-cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHH--HHHHHh---cC------
Confidence            9765432 23446899999999999999999999999999999999999999764332211  111000   00      


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                          .....+..++..+.+++.+||+.||.+|||+.++++.|+.+.....
T Consensus       221 ----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  266 (307)
T 2eva_A          221 ----TRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP  266 (307)
T ss_dssp             ----CCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred             ----CCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence                0111233456789999999999999999999999999998875543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=4.5e-43  Score=344.56  Aligned_cols=265  Identities=15%  Similarity=0.214  Sum_probs=199.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||+||+|...+    ++.+++|+..... .......+.+|+++++.++||||+++++++.+.  ..
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~   93 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQ----GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSE--RC   93 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETT----SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS--SC
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECC----CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC--CE
Confidence            5789999999999999999998644    3445566554432 233456788999999999999999999998765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++ +|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        94 ~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  167 (311)
T 3niz_A           94 LTLVFEFMEK-DLKKVLDEN--KTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLAR  167 (311)
T ss_dssp             EEEEEECCSE-EHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEcCCCC-CHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCce
Confidence            9999999974 888888543  346999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-ccccccc----
Q 011995          333 HIPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-RPFLADD----  404 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-~~~~~~~----  404 (473)
                      .....  ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.........+... .......    
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  247 (311)
T 3niz_A          168 AFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQV  247 (311)
T ss_dssp             ETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGG
T ss_pred             ecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhh
Confidence            76432  3344578999999999976 45899999999999999999999999876554433322110 0000000    


Q ss_pred             cccccc-------cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 CRLSLI-------MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ~~~~~~-------~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ......       .............+.++.+|+.+||+.||.+|||+.|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          248 QELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             TTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            000000       0000000011234578899999999999999999999987

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2.5e-43  Score=348.48  Aligned_cols=264  Identities=20%  Similarity=0.339  Sum_probs=208.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|...+.||+|+||.||+|....+... ..++++...........+.+.+|++++.++ +||||+++++++...  +..
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~-~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~--~~~  101 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLR-MDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR--GYL  101 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET--TEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcc-cceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC--Cce
Confidence            6788999999999999999986543321 122344444333445567799999999999 999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ++||||+++|+|.+++....             ....+++..+..++.||+.||.|||+++   |+||||||+|||++.+
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~  178 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGEN  178 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGG
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCC
Confidence            99999999999999996532             2346999999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcc
Q 011995          321 FSAKLSGYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +.+||+|||++....... .....+++.|+|||.+.+..++.++|||||||++|||++ |..||...........+... 
T Consensus       179 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~-  257 (327)
T 1fvr_A          179 YVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQG-  257 (327)
T ss_dssp             GCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGT-
T ss_pred             CeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcC-
Confidence            999999999987543221 223355788999999998889999999999999999998 99999877654433222110 


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                                      .....+..++..+.+|+.+||..||.+|||+.++++.|+++..++..
T Consensus       258 ----------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~  304 (327)
T 1fvr_A          258 ----------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT  304 (327)
T ss_dssp             ----------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred             ----------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcC
Confidence                            01112345568899999999999999999999999999998877654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=2e-43  Score=342.47  Aligned_cols=253  Identities=18%  Similarity=0.254  Sum_probs=200.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|....+   ...+++|+..........+.+.+|+++++.++||||+++++++.+.  ...
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~   95 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSS---GLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDY--HNM   95 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTT---CCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--SEE
T ss_pred             hhheeecceeccCCCeEEEEEEEccC---CceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecC--CeE
Confidence            46799999999999999999986543   3455566665544455568899999999999999999999999765  789


Q ss_pred             EEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEeccC
Q 011995          254 MLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGYG  329 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DFG  329 (473)
                      ++||||+++|+|.+++... .....+++..+..++.|++.||+|||+.+   |+||||||+|||+   +.++.+||+|||
T Consensus        96 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg  172 (285)
T 3is5_A           96 YIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFG  172 (285)
T ss_dssp             EEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCC
T ss_pred             EEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeee
Confidence            9999999999999988542 12356999999999999999999999999   9999999999999   456889999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++....... .....+++.|+|||.+. ..++.++|||||||++|||++|+.||.+.........+.+..+.....    
T Consensus       173 ~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~----  247 (285)
T 3is5_A          173 LAELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVE----  247 (285)
T ss_dssp             CCCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC-----
T ss_pred             cceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccc----
Confidence            998764432 34457889999999985 568999999999999999999999998876555443333221111000    


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                 ....+.++.+|+.+||+.||.+|||+.|+++
T Consensus       248 -----------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          248 -----------CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             ------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             -----------cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                       1113577889999999999999999999986

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=6e-44  Score=355.76  Aligned_cols=249  Identities=20%  Similarity=0.308  Sum_probs=204.4

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARD  248 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~  248 (473)
                      ...++|...+.||+|+||.||+|+...+   ++.+++|+.....  .......+..|..++..+ +||||+++++++.+.
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~   90 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKT---NQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK   90 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTT---TEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCC---CCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeC
Confidence            4567899999999999999999997543   3556666654321  123456678899999887 999999999999876


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                        +.+|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+||
T Consensus        91 --~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DF  162 (345)
T 1xjd_A           91 --ENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADF  162 (345)
T ss_dssp             --SEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCC
T ss_pred             --CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEC
Confidence              7899999999999999999542   36899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCC--CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          329 GCAGHIPE--TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       329 Gla~~~~~--~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      |+++....  ......++|+.|+|||++.+..++.++|||||||++|||++|..||.+.........+....        
T Consensus       163 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~--------  234 (345)
T 1xjd_A          163 GMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDN--------  234 (345)
T ss_dssp             TTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC--------
T ss_pred             hhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCC--------
Confidence            99986432  23455688999999999999999999999999999999999999998776554433332111        


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH-HHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMR-SIF  449 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-eil  449 (473)
                                ..++...+.++.+||.+||+.||.+||++. +|+
T Consensus       235 ----------~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          235 ----------PFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             ----------CCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ----------CCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence                      112344568899999999999999999997 665

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=7.3e-44  Score=345.58  Aligned_cols=262  Identities=19%  Similarity=0.280  Sum_probs=200.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCe--e--eeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDAS--T--SKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~  249 (473)
                      .++|...+.||+|+||+||+|.......  .  ...+++|+... ......+.+.+|+.+++.++||||+++++++... 
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-   84 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDK-AHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG-   84 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECG-GGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT-
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccc-ccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC-
Confidence            3678899999999999999998654321  1  23344444322 2334457799999999999999999999999765 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc-------
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS-------  322 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~-------  322 (473)
                       +..++||||+++|+|.+++...  ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.       
T Consensus        85 -~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~  158 (289)
T 4fvq_A           85 -DENILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPP  158 (289)
T ss_dssp             -TCCEEEEECCTTCBHHHHHHHT--GGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCC
T ss_pred             -CCCEEEEECCCCCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccc
Confidence             7789999999999999999653  334899999999999999999999999   999999999999998877       


Q ss_pred             -EEEeccCCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcC-CCCCCCCChHHHHhHhhhccc
Q 011995          323 -AKLSGYGCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTG-RKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       323 -vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~~~~~~~~~~~~  399 (473)
                       +||+|||++......  ....+++.|+|||.+.+ ..++.++|||||||++|||++| .+||............... .
T Consensus       159 ~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~-~  235 (289)
T 4fvq_A          159 FIKLSDPGISITVLPK--DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDR-H  235 (289)
T ss_dssp             EEEECCCCSCTTTSCH--HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTT-C
T ss_pred             eeeeccCcccccccCc--cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhcc-C
Confidence             999999998765332  23457889999999987 6689999999999999999995 5555544433322211110 0


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCcc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSST  464 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~~  464 (473)
                                        .++...+.++.+|+.+||+.||.+|||+.++++.|+++.....+...
T Consensus       236 ------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~~~~  282 (289)
T 4fvq_A          236 ------------------QLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVPRG  282 (289)
T ss_dssp             ------------------CCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--------
T ss_pred             ------------------CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCCCCC
Confidence                              01122245688999999999999999999999999999887666544

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.5e-43  Score=341.98  Aligned_cols=251  Identities=20%  Similarity=0.302  Sum_probs=203.3

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|+..+.||+|+||.||+|....+.   ..+++|+.....  .......+.+|+.+++.++||||+++++++.+.  
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--   81 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSK---FILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA--   81 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTC---CEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS--
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCC---cEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecC--
Confidence            3578999999999999999999865543   344555543221  122346788999999999999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~  155 (279)
T 3fdn_A           82 TRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGW  155 (279)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCE
T ss_pred             CEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccc
Confidence            7899999999999999998543   45899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          331 AGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       331 a~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      +............+++.|+|||.+.+..++.++||||||+++|||++|..||...........+....            
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~------------  223 (279)
T 3fdn_A          156 SVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVE------------  223 (279)
T ss_dssp             ESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTC------------
T ss_pred             cccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCC------------
Confidence            87766555566688999999999999999999999999999999999999998766554433332111            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                            ..++...+..+.+|+.+||+.||.+|||+.||++.-
T Consensus       224 ------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~  259 (279)
T 3fdn_A          224 ------FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHP  259 (279)
T ss_dssp             ------CCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred             ------CCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCc
Confidence                  112334567889999999999999999999999753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.6e-43  Score=352.22  Aligned_cols=250  Identities=18%  Similarity=0.220  Sum_probs=205.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ..++|...+.||+|+||.||+|....   +.+.+++|+.....  .......+..|..++..+ +||||+++++++.+. 
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~---~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~-   93 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKG---TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-   93 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETT---EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECS-
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECC---CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcC-
Confidence            35789999999999999999998543   55667777765421  223456788999999988 899999999998876 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       +.+|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus        94 -~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG  166 (353)
T 2i0e_A           94 -DRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFG  166 (353)
T ss_dssp             -SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             -CEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCC
Confidence             7899999999999999999542   35999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCC--CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHIPE--TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~--~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ++.....  ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+....+....+....         
T Consensus       167 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~---------  237 (353)
T 2i0e_A          167 MCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN---------  237 (353)
T ss_dssp             TCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---------
T ss_pred             cccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCC---------
Confidence            9986432  23345688999999999999999999999999999999999999998776554433222110         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~~  451 (473)
                               ..++...+.++.+||.+||..||.+||+     +++|++.
T Consensus       238 ---------~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          238 ---------VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             ---------CCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             ---------CCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence                     1234456688999999999999999995     5777653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.6e-43  Score=344.99  Aligned_cols=259  Identities=19%  Similarity=0.282  Sum_probs=197.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHh--CCCCCcccceeeeecC--C
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLAS--LQHPNLCKLLGFHARD--G  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~--l~HpnIv~l~g~~~~~--~  249 (473)
                      .++|...+.||+|+||+||+|.+.+     +.+++|+...    .....+.+|.+++..  ++||||+++++++...  .
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~vavK~~~~----~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~   77 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSWQG-----ENVAVKIFSS----RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHS   77 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEETT-----EEEEEEEECG----GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETT
T ss_pred             cCcEEEEEeeccCCCcEEEEEEECC-----EEEEEEEecc----ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCC
Confidence            5689999999999999999998632     3445555432    344566677777776  7999999999987643  2


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhh--------hcCCCceeecCCCCCceeeCCCC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH--------EEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH--------~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                      ....++||||+++|+|.+++..    ..+++..+..++.||+.||+|||        +.+   |+||||||+|||++.++
T Consensus        78 ~~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~  150 (301)
T 3q4u_A           78 STQLWLITHYHEMGSLYDYLQL----TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNG  150 (301)
T ss_dssp             EEEEEEEECCCTTCBHHHHHTT----CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTS
T ss_pred             CceeEEehhhccCCCHHHHHhh----cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCC
Confidence            2568999999999999999932    36999999999999999999999        777   99999999999999999


Q ss_pred             cEEEeccCCCcccCCCC------ccCcccccccCChhhhhcC------CCCCcCCchHHHHHHHHHHcC----------C
Q 011995          322 SAKLSGYGCAGHIPETD------ISNSSVAAANLSVETLERG------LLTPKSNVWSFGIVLLELLTG----------R  379 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~------~~~~~~t~~y~aPE~~~~~------~~s~~sDvwSlGvvl~elltG----------~  379 (473)
                      .+||+|||++.......      .....+|+.|+|||++.+.      .++.++|||||||++|||++|          .
T Consensus       151 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~  230 (301)
T 3q4u_A          151 QCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYK  230 (301)
T ss_dssp             CEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred             CEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccc
Confidence            99999999997653322      1234789999999999876      345789999999999999999          8


Q ss_pred             CCCCCCChHHHH-hHhhhcccccccccccccccccccC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          380 KNLDSRHPKEER-NLVKWSRPFLADDCRLSLIMDPQLK-GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       380 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                      .||......... ......  ....      ...+.+. ..++...+..+.+|+.+||+.||.+|||+.+|++.|++++
T Consensus       231 ~pf~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~  301 (301)
T 3q4u_A          231 PPFYDVVPNDPSFEDMRKV--VCVD------QQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID  301 (301)
T ss_dssp             CTTTTTSCSSCCHHHHHHH--HTTS------CCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHC
T ss_pred             ccccccCCCCcchhhhhHH--Hhcc------CCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhccC
Confidence            888553221110 000000  0000      0011111 1123467889999999999999999999999999999874

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=5.8e-44  Score=358.59  Aligned_cols=275  Identities=14%  Similarity=0.135  Sum_probs=205.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCe--eeeEEEEEEEecCCCC----------hhhHhHHHHHHHHHhCCCCCcccc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDAS--TSKKFEATVTRLNPSS----------QGVKEFINDVNTLASLQHPNLCKL  241 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~Ei~~l~~l~HpnIv~l  241 (473)
                      .++|.+.+.||+|+||.||+|.+..+..  ..+.+++|+.......          .....+..|+..+..++|+||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            5689999999999999999999866432  2355666665543210          001234456667778889999999


Q ss_pred             eeeeecCC--CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-
Q 011995          242 LGFHARDG--SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-  318 (473)
Q Consensus       242 ~g~~~~~~--~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-  318 (473)
                      ++++....  ....+|||||+ +++|.+++...  ...+++..+..|+.||+.||+|||+++   |+||||||+||||+ 
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~  187 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN--AKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNY  187 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEES
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEec
Confidence            99987642  24589999999 99999999653  356999999999999999999999999   99999999999999 


Q ss_pred             -CCCcEEEeccCCCcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChH
Q 011995          319 -KDFSAKLSGYGCAGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK  388 (473)
Q Consensus       319 -~~~~vkl~DFGla~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~  388 (473)
                       .++.+||+|||+++.+....         .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.+....
T Consensus       188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~  267 (364)
T 3op5_A          188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD  267 (364)
T ss_dssp             SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred             CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence             88999999999997654221         12345899999999999999999999999999999999999999853322


Q ss_pred             HHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          389 EERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .........  ..  ...+..+.++.+.   ...++.++.+|+..||..||.+||++.+|++.|+++......
T Consensus       268 ~~~~~~~~~--~~--~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~  333 (364)
T 3op5_A          268 PKYVRDSKI--RY--RENIASLMDKCFP---AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGS  333 (364)
T ss_dssp             HHHHHHHHH--HH--HHCHHHHHHHHSC---TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHH--Hh--hhhHHHHHHHhcc---cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence            211111000  00  0011112222111   123457899999999999999999999999999998766544

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-42  Score=337.49  Aligned_cols=259  Identities=15%  Similarity=0.270  Sum_probs=209.2

Q ss_pred             cccccCc-ceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDR-CISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~-~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|.+.. .||+|+||.||+|.+.... ....+++|+..........+.+.+|++++..++||||+++++++..   +..
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   84 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRK-KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA---EAL   84 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES---SSE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCC-CcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC---CCc
Confidence            4566655 9999999999999865322 2345556666554455567889999999999999999999999843   568


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++..  ....+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        85 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           85 MLVMEMAGGGPLHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKA  159 (287)
T ss_dssp             EEEEECCTTEEHHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEEeCCCCCHHHHHHh--CCccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceee
Confidence            999999999999999953  3456999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .....     .....+++.|+|||.+.+..++.++|||||||++|||++ |+.||...........+...          
T Consensus       160 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~----------  229 (287)
T 1u59_A          160 LGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG----------  229 (287)
T ss_dssp             CTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTT----------
T ss_pred             eccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcC----------
Confidence            64332     122345788999999998889999999999999999998 99999876654433222211          


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                             ....++..++.++.+++.+||..||.+||++.++++.|+.+....
T Consensus       230 -------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  274 (287)
T 1u59_A          230 -------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  274 (287)
T ss_dssp             -------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             -------CcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence                   011224456688999999999999999999999999999876443

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=7e-43  Score=339.08  Aligned_cols=264  Identities=17%  Similarity=0.264  Sum_probs=198.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|....    .+.+++|+..... .......+.+|+.+++.++||||+++++++...  +..
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~----~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~   75 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNY----GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK--KRL   75 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETT----SCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS--SCE
T ss_pred             ccchhhhhcccCCCEEEEEEEcCC----CCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccC--CeE
Confidence            578899999999999999998632    3445566554432 222346788999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++ +|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        76 ~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  149 (288)
T 1ob3_A           76 VLVFEHLDQ-DLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARA  149 (288)
T ss_dssp             EEEEECCSE-EHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             EEEEEecCC-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccc
Confidence            999999975 999988543  356899999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-ccccccc-cccc
Q 011995          334 IPET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-RPFLADD-CRLS  408 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-~~~~~~~-~~~~  408 (473)
                      ....  ......+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+.........+... ....... ....
T Consensus       150 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (288)
T 1ob3_A          150 FGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVT  229 (288)
T ss_dssp             HCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGG
T ss_pred             cCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhh
Confidence            5432  23445779999999999764 5899999999999999999999999887655443322110 0000000 0000


Q ss_pred             c--cccccc-------CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          409 L--IMDPQL-------KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       409 ~--~~~~~l-------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .  ..++..       ...+....+.++.+|+.+||+.||++|||+.|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          230 ELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             GSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0  000000       01122345688999999999999999999999986

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.1e-43  Score=361.40  Aligned_cols=257  Identities=14%  Similarity=0.141  Sum_probs=206.7

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHA  246 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~  246 (473)
                      ++....++|+..+.||+|+||.||+|....+   .+.+++|+.....  .......+.+|+.++..++|||||++++++.
T Consensus        63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~---~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~  139 (410)
T 3v8s_A           63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKST---RKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ  139 (410)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             hcccCccccEEEEEEEcCCCEEEEEEEECCC---CcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            3344568899999999999999999996543   3455666654311  1223356889999999999999999999998


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                      +.  ..+||||||+++|+|.+++...    .+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+
T Consensus       140 ~~--~~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~  210 (410)
T 3v8s_A          140 DD--RYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLA  210 (410)
T ss_dssp             CS--SEEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEEC
T ss_pred             EC--CEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEe
Confidence            76  7899999999999999999542    4899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCCC---ccCcccccccCChhhhhcCC----CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          327 GYGCAGHIPETD---ISNSSVAAANLSVETLERGL----LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       327 DFGla~~~~~~~---~~~~~~t~~y~aPE~~~~~~----~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |||+++......   ....+||+.|+|||++.+..    ++.++|||||||++|||++|+.||.+.........+.....
T Consensus       211 DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~  290 (410)
T 3v8s_A          211 DFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKN  290 (410)
T ss_dssp             CCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHH
T ss_pred             ccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccc
Confidence            999998765442   23568999999999997765    78999999999999999999999988766554433321100


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEE  451 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~  451 (473)
                      .              +.......++.++.+||.+||..+|.+  ||+++||++.
T Consensus       291 ~--------------~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          291 S--------------LTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             H--------------CCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             c--------------ccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            0              000001235688999999999999988  9999999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=7.2e-43  Score=337.04  Aligned_cols=256  Identities=21%  Similarity=0.335  Sum_probs=207.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|...++    ..+++|+.  .......+.+.+|+++++.++||||+++++++..   +..
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~----~~vavK~~--~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~   82 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGH----TKVAVKSL--KQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ---EPI   82 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTT----EEEEEEEE--CTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---SSC
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCC----cEEEEEEe--cCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcC---CCc
Confidence            46788999999999999999987543    23444443  3334456789999999999999999999998853   568


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++... ....+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        83 ~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  158 (279)
T 1qpc_A           83 YIITEYMENGSLVDFLKTP-SGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARL  158 (279)
T ss_dssp             EEEEECCTTCBHHHHTTSH-HHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEecCCCCCHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCccccc
Confidence            9999999999999999532 1236899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......   ....++..|+|||.+.+..++.++|||||||++|||++ |+.||.+....+....+...            
T Consensus       159 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~------------  226 (279)
T 1qpc_A          159 IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG------------  226 (279)
T ss_dssp             CSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT------------
T ss_pred             ccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcc------------
Confidence            654332   23345678999999998889999999999999999999 99999876654433222111            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                           .....+..++..+.+++.+||..||++|||+.+|++.|+++....
T Consensus       227 -----~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          227 -----YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             -----cCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence                 001123345678999999999999999999999999999987543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=4.3e-43  Score=349.76  Aligned_cols=252  Identities=17%  Similarity=0.260  Sum_probs=198.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||+|+...+   .+.+++|+.....  .......+.+|+.++.++ +||||+++++++.+.  
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~--   82 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKT---DRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE--   82 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCC---CCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeC--
Confidence            36799999999999999999996543   4566677665432  334456788999999988 899999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+
T Consensus        83 ~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~  156 (345)
T 3a8x_A           83 SRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGM  156 (345)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGG
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccc
Confidence            7899999999999999999542   36999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccC--CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIP--ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~--~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++...  .......++|+.|+|||++.+..++.++|||||||++|||++|+.||..............       .....
T Consensus       157 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~-------~~~~~  229 (345)
T 3a8x_A          157 CKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTE-------DYLFQ  229 (345)
T ss_dssp             CBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CH-------HHHHH
T ss_pred             cccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccH-------HHHHH
Confidence            98642  2234456889999999999999999999999999999999999999965321110000000       00000


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM  445 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  445 (473)
                      .+....  ..++...+.++.+|+.+||+.||.+||++
T Consensus       230 ~i~~~~--~~~p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          230 VILEKQ--IRIPRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             HHHHCC--CCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             HHHcCC--CCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence            000111  12344567889999999999999999995

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.4e-43  Score=365.61  Aligned_cols=248  Identities=17%  Similarity=0.238  Sum_probs=196.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||.||+|....   .+..+++|+....  ........+.+|+.++..++||||+++++++...  +
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~--~  221 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKA---TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH--D  221 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEET--T
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcC---CCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeC--C
Confidence            4689999999999999999998544   3455666665532  2334456788999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      .++|||||+++|+|.+++..   ...+++..+..++.||+.||+|||+ .+   ||||||||+||||+.++.+||+|||+
T Consensus       222 ~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~  295 (446)
T 4ejn_A          222 RLCFVMEYANGGELFFHLSR---ERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGL  295 (446)
T ss_dssp             EEEEEECCCSSCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCC
T ss_pred             EEEEEEeeCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCC
Confidence            89999999999999999854   3468999999999999999999998 88   99999999999999999999999999


Q ss_pred             CcccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++.....  ......+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+....          
T Consensus       296 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~----------  365 (446)
T 4ejn_A          296 CKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE----------  365 (446)
T ss_dssp             CCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC----------
T ss_pred             ceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCC----------
Confidence            9864322  3345688999999999999999999999999999999999999998776554433332111          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                              ..++...+.++.+||.+||+.||.+||     ++.|+++
T Consensus       366 --------~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          366 --------IRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             --------CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             --------CCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence                    112444568899999999999999999     9999986

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=4.1e-43  Score=350.51  Aligned_cols=251  Identities=17%  Similarity=0.224  Sum_probs=188.0

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|+..+.||+|+||.||+|....+   .+.+++|+....   ...+.+.+|++++.+++||||+++++++...  +.
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~---~~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--~~  122 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGT---QKPYALKVLKKT---VDKKIVRTEIGVLLRLSHPNIIKLKEIFETP--TE  122 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECS--SE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCC---CcEEEEEEeccc---hhHHHHHHHHHHHHhCCCCCCcceeeeEecC--Ce
Confidence            467899999999999999999997543   344556655432   2346688999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl~DFG  329 (473)
                      .++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.   ++.+||+|||
T Consensus       123 ~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg  196 (349)
T 2w4o_A          123 ISLVLELVTGGELFDRIVE---KGYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFG  196 (349)
T ss_dssp             EEEEECCCCSCBHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC
T ss_pred             EEEEEEeCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCc
Confidence            9999999999999999953   346899999999999999999999999   999999999999975   8899999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhhccccccccccc
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~  407 (473)
                      ++....... .....+|+.|+|||++.+..++.++|||||||++|||++|..||........ ...+...      .   
T Consensus       197 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~------~---  267 (349)
T 2w4o_A          197 LSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNC------E---  267 (349)
T ss_dssp             ----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTT------C---
T ss_pred             cccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhC------C---
Confidence            998764432 2345789999999999998999999999999999999999999976554331 1111100      0   


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           ......+....+.++.+|+.+||+.||.+|||+.++++.
T Consensus       268 -----~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          268 -----YYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             -----CCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             -----CccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                 000111223456789999999999999999999999873

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-44  Score=355.92  Aligned_cols=248  Identities=17%  Similarity=0.245  Sum_probs=201.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|.+.+.||+|+||.||+|....+   ...+++|+.....  .......+.+|+.+++.++||||+++++++...  .
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~--~   82 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKT---QQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP--T   82 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS--S
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCC---CCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC--C
Confidence            36899999999999999999996443   3455666554321  123346788999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+ +|+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        83 ~~~lv~E~~-~g~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s  155 (336)
T 3h4j_B           83 DIVMVIEYA-GGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLS  155 (336)
T ss_dssp             EEEEEECCC-CEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCT
T ss_pred             EEEEEEECC-CCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccc
Confidence            899999999 78999988543   46999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....... .....+|+.|+|||++.+..+ +.++|||||||++|+|++|..||.+........                .
T Consensus       156 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~----------------~  219 (336)
T 3h4j_B          156 NIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFK----------------K  219 (336)
T ss_dssp             BTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBC----------------C
T ss_pred             eeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHH----------------H
Confidence            8765443 345678999999999988776 689999999999999999999997643222110                0


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +..  ....++...+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       220 i~~--~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          220 VNS--CVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             CCS--SCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             HHc--CCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            000  0112344566889999999999999999999999874

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=339.72  Aligned_cols=271  Identities=17%  Similarity=0.193  Sum_probs=202.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC----CChhhHhHHHHHHHHHhCC---CCCcccceeee
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP----SSQGVKEFINDVNTLASLQ---HPNLCKLLGFH  245 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~  245 (473)
                      ..++|+..+.||+|+||+||+|...   ...+.+++|+.....    .......+.+|+.+++.++   ||||+++++++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~   83 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDP---HSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVC   83 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECT---TTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred             cccceEEEEEEecCCCeEEEEEEEC---CCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeee
Confidence            4678999999999999999999843   344566666655432    1222356778888877774   99999999998


Q ss_pred             ecCCCC---ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc
Q 011995          246 ARDGSD---QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS  322 (473)
Q Consensus       246 ~~~~~~---~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~  322 (473)
                      .....+   ..++||||+. |+|.+++.... ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.
T Consensus        84 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~  158 (308)
T 3g33_A           84 ATSRTDREIKVTLVFEHVD-QDLRTYLDKAP-PPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGT  158 (308)
T ss_dssp             EECCSSSEEEEEEEEECCC-CBHHHHHHTCC-TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSC
T ss_pred             eccCCCCceeEEEEehhhh-cCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCC
Confidence            765322   5799999996 59999996542 345999999999999999999999999   999999999999999999


Q ss_pred             EEEeccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          323 AKLSGYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       323 vkl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      +||+|||++....... .....+|+.|+|||++.+..++.++|||||||++|||++|++||.+.........+.......
T Consensus       159 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~  238 (308)
T 3g33_A          159 VKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP  238 (308)
T ss_dssp             EEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             EEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence            9999999998765432 344578999999999999999999999999999999999999998877655443332111000


Q ss_pred             ccccccc------cccccccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLS------LIMDPQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~------~~~~~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .......      ....+...   .......+..+.+|+.+||+.||.+|||+.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            0000000      00000000   00112456788999999999999999999999863

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=6.9e-44  Score=365.79  Aligned_cols=261  Identities=14%  Similarity=0.160  Sum_probs=207.9

Q ss_pred             HHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeee
Q 011995          168 DEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFH  245 (473)
Q Consensus       168 ~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~  245 (473)
                      .++....++|+..+.||+|+||+||+|+...+   .+.+++|+.....  .......+.+|+.++..++||||+++++++
T Consensus        67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~---~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  143 (437)
T 4aw2_A           67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNA---DKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF  143 (437)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hcccCChhheEEEEEEEeCCCEEEEEEEEcCC---CcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            34445578999999999999999999997654   3455666654311  122234588999999999999999999999


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEE
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL  325 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl  325 (473)
                      .+.  +.+|||||||++|+|.+++...  ...+++..+..++.||+.||.|||+.+   ||||||||+||||+.++.+||
T Consensus       144 ~~~--~~~~lV~Ey~~gg~L~~~l~~~--~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL  216 (437)
T 4aw2_A          144 QDD--NNLYLVMDYYVGGDLLTLLSKF--EDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRL  216 (437)
T ss_dssp             ECS--SEEEEEECCCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEE
T ss_pred             eeC--CEEEEEEecCCCCcHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEE
Confidence            876  7899999999999999999642  356999999999999999999999999   999999999999999999999


Q ss_pred             eccCCCcccCCCC---ccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc
Q 011995          326 SGYGCAGHIPETD---ISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       326 ~DFGla~~~~~~~---~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~  397 (473)
                      +|||+++......   ....+||+.|+|||++.     ...++.++|||||||++|||++|+.||.+....+....+...
T Consensus       217 ~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~  296 (437)
T 4aw2_A          217 ADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNH  296 (437)
T ss_dssp             CCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTH
T ss_pred             cchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhc
Confidence            9999997664432   23357899999999997     456899999999999999999999999887665544333211


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCC--CCCHHHHHHH
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSE--RPTMRSIFEE  451 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~--RPt~~eil~~  451 (473)
                      ..      .   ..-+    .....++.++.+||.+||..+|.+  |++++|+++.
T Consensus       297 ~~------~---~~~p----~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          297 KE------R---FQFP----TQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             HH------H---CCCC----SSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             cc------c---ccCC----cccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            00      0   0000    011235688999999999888888  9999999874

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.3e-43  Score=355.28  Aligned_cols=267  Identities=20%  Similarity=0.290  Sum_probs=206.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|....+   ...+++|+............+.+|+.+++.++||||+++++++..+  +..
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~  106 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPS---GLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--GEI  106 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTT---CCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET--TEE
T ss_pred             cccceeeeeecCCCCeEEEEEEECCC---CcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC--CEE
Confidence            36799999999999999999996543   3556666666554555667899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+. +   |+||||||+|||++.++.+||+|||++.
T Consensus       107 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  180 (360)
T 3eqc_A          107 SICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSG  180 (360)
T ss_dssp             EEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             EEEEECCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCc
Confidence            9999999999999999543   3589999999999999999999996 7   9999999999999999999999999997


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc-------------
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP-------------  399 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~-------------  399 (473)
                      ...........+|+.|+|||++.+..++.++|||||||++|||++|+.||.................             
T Consensus       181 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (360)
T 3eqc_A          181 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP  260 (360)
T ss_dssp             HHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------
T ss_pred             ccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccC
Confidence            6544444556789999999999999999999999999999999999999987665443222110000             


Q ss_pred             ------cccc-------ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 ------FLAD-------DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ------~~~~-------~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            +..+       ...+..+.............+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          261 GRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             -------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                  0000       000000000111111122356789999999999999999999999874

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=2e-43  Score=349.17  Aligned_cols=285  Identities=18%  Similarity=0.250  Sum_probs=212.1

Q ss_pred             hcccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|.+.. +....+.+++|+.... .....+.+.+|++++++++|+||+++++++...+...
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC-CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence            3678999999999999999998643 2334556666655432 3344567899999999999999999999988665578


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  175 (327)
T 3lxl_A          101 LRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAK  175 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred             EEEEEeecCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccce
Confidence            99999999999999999642  235899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          333 HIPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       333 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ......     .....++..|+|||.+.+..++.++|||||||++|||++|..||.......... ..+... .......
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~-~~~~~~-~~~~~~~  253 (327)
T 3lxl_A          176 LLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRM-MGCERD-VPALSRL  253 (327)
T ss_dssp             ECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHH-CC-----CCHHHHH
T ss_pred             ecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhh-cccccc-cccHHHH
Confidence            764332     123356778999999999889999999999999999999999987533221110 000000 0000011


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCcccc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTVR  466 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~~~~  466 (473)
                      ............+..++..+.+|+.+||+.||.+|||+.+|++.|+.+..........+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~  312 (327)
T 3lxl_A          254 LELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGCETHA  312 (327)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----------
T ss_pred             HHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCccccc
Confidence            11112222223355667889999999999999999999999999999876665544433

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.9e-43  Score=354.89  Aligned_cols=268  Identities=14%  Similarity=0.215  Sum_probs=197.0

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDG  249 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~  249 (473)
                      ...++|+..+.||+|+||.||+|....+   ++.+++|+.... ........+.+|+.++..+. ||||+++++++...+
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~   82 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRT---GEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADN   82 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTT---CCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTT
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCC---CCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCC
Confidence            3567899999999999999999985443   445556655332 23445677889999999997 999999999998765


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ...+|+|||||+ |+|.+++..    ..+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||
T Consensus        83 ~~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG  154 (388)
T 3oz6_A           83 DRDVYLVFDYME-TDLHAVIRA----NILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFG  154 (388)
T ss_dssp             SSCEEEEEECCS-EEHHHHHHH----TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CCEEEEEecccC-cCHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCc
Confidence            568999999996 699999854    35899999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC-----------------------CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCC
Q 011995          330 CAGHIPET-----------------------DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSR  385 (473)
Q Consensus       330 la~~~~~~-----------------------~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~  385 (473)
                      +++.+...                       .....++|++|+|||++.+ ..++.++|||||||++|||++|++||.+.
T Consensus       155 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          155 LSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             TCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99765321                       1234578999999999976 56899999999999999999999999987


Q ss_pred             ChHHHHhHhhhccccccccccccccc------------------ccccCCCC------------CHHHHHHHHHHHHHhc
Q 011995          386 HPKEERNLVKWSRPFLADDCRLSLIM------------------DPQLKGRF------------PLKAARTVADIALRCL  435 (473)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~~~------------~~~~~~~l~~li~~cl  435 (473)
                      ........+......... ..+..+.                  .......+            ...++.++.+|+.+||
T Consensus       235 ~~~~~~~~i~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L  313 (388)
T 3oz6_A          235 STMNQLERIIGVIDFPSN-EDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLL  313 (388)
T ss_dssp             SHHHHHHHHHHHHCCCCH-HHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhcCCCCH-HHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhh
Confidence            765554433211000000 0000000                  00000000            1134578999999999


Q ss_pred             ccCCCCCCCHHHHHHH
Q 011995          436 QKEPSERPTMRSIFEE  451 (473)
Q Consensus       436 ~~dP~~RPt~~eil~~  451 (473)
                      +.||.+|||+.|+++.
T Consensus       314 ~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          314 QFNPNKRISANDALKH  329 (388)
T ss_dssp             CSSGGGSCCHHHHTTS
T ss_pred             ccCcccCCCHHHHhCC
Confidence            9999999999999976

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=5.1e-43  Score=369.17  Aligned_cols=257  Identities=21%  Similarity=0.360  Sum_probs=209.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|.+.++.    .+++|+.  .......+.|.+|+++|++++|+|||++++++..   +..
T Consensus       266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~----~vavK~~--~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~  336 (535)
T 2h8h_A          266 RESLRLEVKLGQGCFGEVWMGTWNGTT----RVAIKTL--KPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---EPI  336 (535)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTE----EEEEEEE--CTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---SSC
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCc----eEEEEEe--CCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee---ccc
Confidence            467888899999999999999986532    2444444  3333446789999999999999999999999854   568


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +|||||+.+|+|.++|... ....+++..+..|+.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.
T Consensus       337 ~lv~e~~~~gsL~~~l~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~  412 (535)
T 2h8h_A          337 YIVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARL  412 (535)
T ss_dssp             EEEECCCTTEEHHHHHSHH-HHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTT
T ss_pred             eEeeehhcCCcHHHHHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEccccccee
Confidence            9999999999999999542 2345899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....   .....++..|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+...            
T Consensus       413 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~------------  480 (535)
T 2h8h_A          413 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG------------  480 (535)
T ss_dssp             CCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTT------------
T ss_pred             cCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC------------
Confidence            65332   123345678999999999999999999999999999999 99999887655443322211            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                           .....+..++..+.+||.+||+.||++|||+.+|++.|+.+.....
T Consensus       481 -----~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~  526 (535)
T 2h8h_A          481 -----YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  526 (535)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCS
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccC
Confidence                 0111234566889999999999999999999999999999875443

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.4e-42  Score=342.38  Aligned_cols=253  Identities=17%  Similarity=0.203  Sum_probs=205.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----hhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----QGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+.......     ...+.+.+|+.++..++||||+++++++.+.
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   87 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKST---GLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENR   87 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCC---CeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecC
Confidence            46799999999999999999996543   345566665543221     1357799999999999999999999999766


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC----cEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF----SAK  324 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~----~vk  324 (473)
                        ...++||||+++++|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++    .+|
T Consensus        88 --~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~k  159 (321)
T 2a2a_A           88 --TDVVLILELVSGGELFDFLAQ---KESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIK  159 (321)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHT---CSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEE
T ss_pred             --CEEEEEEEcCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEE
Confidence              789999999999999999954   346899999999999999999999999   99999999999999887    799


Q ss_pred             EeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          325 LSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       325 l~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+|||++...... ......+|+.|+|||.+.+..++.++|||||||++|||++|..||.+....+....+......   
T Consensus       160 l~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~---  236 (321)
T 2a2a_A          160 LIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYD---  236 (321)
T ss_dssp             ECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCC---
T ss_pred             EccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccc---
Confidence            9999999876543 234557899999999999999999999999999999999999999876654433322211000   


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             .++.    +....+..+.+|+.+||..||.+|||+.++++.
T Consensus       237 -------~~~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          237 -------FDEE----FFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             -------CCHH----HHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             -------cChh----hhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                   0000    012345778999999999999999999999873

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.1e-43  Score=348.48  Aligned_cols=261  Identities=16%  Similarity=0.164  Sum_probs=201.4

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC----CCChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN----PSSQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      ++....++|...+.||+|+||.||+|....+   .+.+++|+....    ......+.+.+|+.+++.++||||++++++
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~   96 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQT---RAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEV   96 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTT---CCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCC---CceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehh
Confidence            3456678899999999999999999986543   344556655432    133456789999999999999999999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCC-------------------------------------CCCCCCHHHHHHHH
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRS-------------------------------------DGPPIDWNTRVKIA  287 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~-------------------------------------~~~~l~~~~~~~i~  287 (473)
                      +.+.  +..++||||+++|+|.+++....                                     ....+++..+..++
T Consensus        97 ~~~~--~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (345)
T 3hko_A           97 YEDE--QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIM  174 (345)
T ss_dssp             EECS--SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHH
T ss_pred             hccC--CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHH
Confidence            9876  78999999999999999884210                                     01124677888999


Q ss_pred             HHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC--cEEEeccCCCcccCCC------CccCcccccccCChhhhhc--C
Q 011995          288 LCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF--SAKLSGYGCAGHIPET------DISNSSVAAANLSVETLER--G  357 (473)
Q Consensus       288 ~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~--~vkl~DFGla~~~~~~------~~~~~~~t~~y~aPE~~~~--~  357 (473)
                      .||+.||+|||+++   |+||||||+|||++.++  .+||+|||++..+...      ......+|+.|+|||++.+  .
T Consensus       175 ~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  251 (345)
T 3hko_A          175 RQIFSALHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNE  251 (345)
T ss_dssp             HHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSS
T ss_pred             HHHHHHHHHHHHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCC
Confidence            99999999999999   99999999999998776  8999999999765321      1234578899999999975  6


Q ss_pred             CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhccc
Q 011995          358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQK  437 (473)
Q Consensus       358 ~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~  437 (473)
                      .++.++|||||||++|||++|+.||......+....+.......              ........+..+.+|+.+||+.
T Consensus       252 ~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~li~~~l~~  317 (345)
T 3hko_A          252 SYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCF--------------ENPNYNVLSPLARDLLSNLLNR  317 (345)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCT--------------TSGGGGGSCHHHHHHHHHHSCS
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhccccc--------------CCcccccCCHHHHHHHHHHcCC
Confidence            78999999999999999999999998776554433222111000              0001123567899999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 011995          438 EPSERPTMRSIFEE  451 (473)
Q Consensus       438 dP~~RPt~~eil~~  451 (473)
                      ||.+|||+.++++.
T Consensus       318 ~p~~Rps~~~~l~h  331 (345)
T 3hko_A          318 NVDERFDAMRALQH  331 (345)
T ss_dssp             CTTTSCCHHHHHHS
T ss_pred             ChhHCCCHHHHhcC
Confidence            99999999999873

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.8e-43  Score=342.25  Aligned_cols=268  Identities=13%  Similarity=0.098  Sum_probs=205.3

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|+..+.||+|+||.||+|....+   .+.+++|+....   .....+.+|+.++..++|++++..++++...+ +.
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~---~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~-~~   79 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAA---GEEVAIKLECVK---TKHPQLHIESKIYKMMQGGVGIPTIRWCGAEG-DY   79 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTT---TEEEEEEEEEC------CCCHHHHHHHHHHHTTSTTCCCEEEEEEET-TE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCC---CceEEEEeeccc---ccchHHHHHHHHHHHhcCCCCCCeeeeecCCC-Cc
Confidence            457899999999999999999985443   345566654433   22356889999999999999888887775543 78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DFG  329 (473)
                      .++||||+ +++|.+++...  ...+++..+..++.||+.||.|||+++   |+||||||+|||+   +.++.+||+|||
T Consensus        80 ~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg  153 (296)
T 4hgt_A           80 NVMVMELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFG  153 (296)
T ss_dssp             EEEEEECC-CCBHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCT
T ss_pred             eEEEEEcc-CCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCc
Confidence            89999999 99999999642  346999999999999999999999999   9999999999999   788999999999


Q ss_pred             CCcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          330 CAGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       330 la~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      ++.......         .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||..................
T Consensus       154 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  233 (296)
T 4hgt_A          154 LAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK  233 (296)
T ss_dssp             TCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH
T ss_pred             cceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcc
Confidence            998764332         13457889999999999999999999999999999999999999765432211111100000


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCCc
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSS  463 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~~  463 (473)
                           ...    .. .......++.++.+|+.+||+.||++|||+.+|++.|+++..+.+.+.
T Consensus       234 -----~~~----~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~  286 (296)
T 4hgt_A          234 -----KMS----TP-IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSY  286 (296)
T ss_dssp             -----HHH----SC-HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCCT
T ss_pred             -----ccc----ch-hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCc
Confidence                 000    00 000012335789999999999999999999999999999987776543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=2.4e-43  Score=346.30  Aligned_cols=262  Identities=20%  Similarity=0.249  Sum_probs=199.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC-
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS-  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~-  250 (473)
                      .++|+..+.||+|+||.||+|....+   .+.+++|+.....  .......+.+|+.++.+++||||+++++++..... 
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   87 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRD---HRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA   87 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETT
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCC---CceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCC
Confidence            46799999999999999999985443   4556666665432  23345678999999999999999999999876422 


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       ...|+||||+++|+|.+++...   ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg  161 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFG  161 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCS
T ss_pred             CcccEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeecc
Confidence             2359999999999999999543   36899999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          330 CAGHIPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       330 la~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      ++.......     .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||.+.................   
T Consensus       162 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~---  238 (311)
T 3ork_A          162 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP---  238 (311)
T ss_dssp             CC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCC---
T ss_pred             CcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCC---
Confidence            998664321     223467999999999999999999999999999999999999998766544322111100000   


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHhhhcc
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-MRSIFEELDRQESR  458 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-~~eil~~L~~l~~~  458 (473)
                              +   ......++.++.+|+.+||+.||.+||+ ++++.+.|.++...
T Consensus       239 --------~---~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~  282 (311)
T 3ork_A          239 --------P---SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG  282 (311)
T ss_dssp             --------H---HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTT
T ss_pred             --------c---ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcC
Confidence                    0   0001235678999999999999999996 55555667665443

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=5.3e-43  Score=352.83  Aligned_cols=248  Identities=16%  Similarity=0.185  Sum_probs=195.4

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEE
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~  257 (473)
                      ...+.||+|+||.||+|....+   +..+++|+.... .....+.+.+|+++|.+++||||+++++++...  +..+|||
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~---g~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~--~~~~lv~  165 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETAT---GLKLAAKIIKTR-GMKDKEEVKNEISVMNQLDHANLIQLYDAFESK--NDIVLVM  165 (373)
T ss_dssp             EEEEECC-----CEEEEEETTT---CCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS--SEEEEEE
T ss_pred             ecceEEecCcCEEEEEEEEcCC---CcEEEEEEEccc-ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC--CEEEEEE
Confidence            3357899999999999986543   345556655433 224567899999999999999999999999876  7899999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee--CCCCcEEEeccCCCcccC
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI--DKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl--~~~~~vkl~DFGla~~~~  335 (473)
                      ||+++|+|.+++...  ...+++..+..++.||+.||+|||+.+   |+||||||+|||+  +.++.+||+|||++....
T Consensus       166 E~~~~~~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~  240 (373)
T 2x4f_A          166 EYVDGGELFDRIIDE--SYNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYK  240 (373)
T ss_dssp             ECCTTCEEHHHHHHT--GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECC
T ss_pred             eCCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecC
Confidence            999999999988543  346899999999999999999999999   9999999999999  567899999999998765


Q ss_pred             CCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccc
Q 011995          336 ETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQ  414 (473)
Q Consensus       336 ~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (473)
                      ... .....+|+.|+|||++.+..++.++|||||||++|||++|..||.+.........+.....      .        
T Consensus       241 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~------~--------  306 (373)
T 2x4f_A          241 PREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRW------D--------  306 (373)
T ss_dssp             TTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCC------C--------
T ss_pred             CccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccC------C--------
Confidence            433 3345789999999999988899999999999999999999999988765543332211100      0        


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +.......++.++.+||.+||+.||.+|||+.|+++
T Consensus       307 ~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          307 LEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             SCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000011234578999999999999999999999997

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=8.3e-43  Score=361.37  Aligned_cols=248  Identities=18%  Similarity=0.268  Sum_probs=204.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....   +++.+++|+.....  .......+.+|+.+++.++||||+++++++...  +
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~---~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~--~   89 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHEL---TGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTP--S   89 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETT---TCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECS--S
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECC---CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--C
Confidence            3679999999999999999998653   34556666654321  122356789999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        90 ~~~lv~E~~~gg~L~~~l~~---~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a  163 (476)
T 2y94_A           90 DIFMVMEYVSGGELFDYICK---NGRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLS  163 (476)
T ss_dssp             EEEEEEECCSSEEHHHHTTS---SSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSC
T ss_pred             EEEEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccch
Confidence            89999999999999999953   346999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....... ....++|+.|+|||++.+..+ +.++|||||||++|||++|..||.+.........+....           
T Consensus       164 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~-----------  232 (476)
T 2y94_A          164 NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGI-----------  232 (476)
T ss_dssp             EECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTC-----------
T ss_pred             hhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC-----------
Confidence            8765433 345678999999999988765 689999999999999999999998766544332221110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                             ...+...+.++.+|+.+||+.||.+|||+.+|++
T Consensus       233 -------~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          233 -------FYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             -------CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -------cCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence                   0113345578999999999999999999999997

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=8.8e-43  Score=344.60  Aligned_cols=264  Identities=19%  Similarity=0.303  Sum_probs=207.1

Q ss_pred             hcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|.+.+  +......+++|+............+.+|+.++++++||||+++++++...  .
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~  106 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS--L  106 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--S
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC--C
Confidence            4678999999999999999998643  23344556666654444555667899999999999999999999998765  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEE
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD----GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAK  324 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vk  324 (473)
                      ..++||||+++|+|.+++.....    ...+++..+..++.||+.||.|||+++   |+||||||+|||++.   +..+|
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~k  183 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAK  183 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEE
Confidence            78999999999999999975431    245899999999999999999999999   999999999999984   45699


Q ss_pred             EeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||++.......    .....+++.|+|||.+.+..++.++|||||||++|||++ |..||...........+.... 
T Consensus       184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-  262 (327)
T 2yfx_A          184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG-  262 (327)
T ss_dssp             ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-
T ss_pred             ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCC-
Confidence            99999987543221    223456789999999999999999999999999999998 999998766544332222110 


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                                      ....+..++..+.+++.+||+.||.+||++.+|++.|+.+....
T Consensus       263 ----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          263 ----------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             ----------------CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence                            01113345678999999999999999999999999999876543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=2.2e-42  Score=358.06  Aligned_cols=266  Identities=15%  Similarity=0.192  Sum_probs=197.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|+..+.||+|+||+||+|....   +.+.+++|+..... .....+.+.+|+.+|+.++|||||++++++...+   
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~---~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~  137 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAV---LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLE  137 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETT---TTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTT
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECC---CCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccc
Confidence            5789999999999999999998544   34556666655332 3344677899999999999999999999986542   


Q ss_pred             -CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          250 -SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       250 -~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                       ...+||||||+++ +|.+.+..     .+++..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+||
T Consensus       138 ~~~~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DF  208 (464)
T 3ttj_A          138 EFQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDF  208 (464)
T ss_dssp             TCCEEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC
T ss_pred             cCCeEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEE
Confidence             2467999999966 57776632     3899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc--c------
Q 011995          329 GCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR--P------  399 (473)
Q Consensus       329 Gla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~--~------  399 (473)
                      |+++..... ......+|+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..+....+....  +      
T Consensus       209 G~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~  288 (464)
T 3ttj_A          209 GLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK  288 (464)
T ss_dssp             CCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred             EeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            999876543 2345688999999999999999999999999999999999999999877655433321100  0      


Q ss_pred             --------ccccc-----cccccccccccCC---CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 --------FLADD-----CRLSLIMDPQLKG---RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 --------~~~~~-----~~~~~~~~~~l~~---~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              +....     ..+.......+..   ......+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                    00000     0000000000000   0012236789999999999999999999999874

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3.2e-43  Score=354.14  Aligned_cols=249  Identities=19%  Similarity=0.200  Sum_probs=194.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHH-HHhCCCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNT-LASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~-l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||+|+...+   .+.+++|+.....  .......+.+|..+ ++.++||||+++++++.+.  
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~---~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~--  111 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAE---EVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA--  111 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTT---CCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECS--
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCC---CCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeC--
Confidence            46899999999999999999996543   3556666665432  22334566777776 5678999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +.+|+||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+
T Consensus       112 ~~~~lv~E~~~gg~L~~~l~~---~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~  185 (373)
T 2r5t_A          112 DKLYFVLDYINGGELFYHLQR---ERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGL  185 (373)
T ss_dssp             SEEEEEEECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCB
T ss_pred             CEEEEEEeCCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCcc
Confidence            789999999999999999954   236899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCC--CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPE--TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~--~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++....  ......++|+.|+|||++.+..++.++|||||||++|||++|..||...+..+....+....          
T Consensus       186 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~----------  255 (373)
T 2r5t_A          186 CKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKP----------  255 (373)
T ss_dssp             CGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSC----------
T ss_pred             ccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcc----------
Confidence            986432  23455688999999999999999999999999999999999999998766554433222110          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              ..++..++..+.+||.+||+.||.+||++.+.+++
T Consensus       256 --------~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~  290 (373)
T 2r5t_A          256 --------LQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFME  290 (373)
T ss_dssp             --------CCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred             --------cCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHH
Confidence                    01233456789999999999999999998644433

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.6e-42  Score=335.36  Aligned_cols=253  Identities=16%  Similarity=0.216  Sum_probs=205.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|....+   +..+++|+..... .......+.+|+.++++++||||+++++++...  ..
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   79 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTT---GLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE--SF   79 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS--SE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCC---CceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcC--CE
Confidence            57899999999999999999986543   3455666665432 334457788999999999999999999999765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc---EEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS---AKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~---vkl~DFG  329 (473)
                      .++||||+++++|.+.+...   ..+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.   +||+|||
T Consensus        80 ~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg  153 (284)
T 3kk8_A           80 HYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFG  153 (284)
T ss_dssp             EEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCT
T ss_pred             EEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeece
Confidence            89999999999998888543   45899999999999999999999999   999999999999986655   9999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++....... .....+++.|+|||.+.+..++.++||||||+++|+|++|..||...........+......        
T Consensus       154 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--------  225 (284)
T 3kk8_A          154 LAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYD--------  225 (284)
T ss_dssp             TCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC--------
T ss_pred             eeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcccc--------
Confidence            997665433 24457899999999999999999999999999999999999999877655443333211100        


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            ........++.++.+|+.+||+.||.+|||+.|+++.
T Consensus       226 ------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          226 ------YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             ------CCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             ------CCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence                  0001122455789999999999999999999999984

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-42  Score=343.67  Aligned_cols=267  Identities=16%  Similarity=0.255  Sum_probs=201.0

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC--CCCCcccceeeee
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL--QHPNLCKLLGFHA  246 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l--~HpnIv~l~g~~~  246 (473)
                      .-....++|+..+.||+|+||.||+|.+.+     +.+++|+...    .....+.+|.+++..+  +||||+++++++.
T Consensus        31 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-----~~vavK~~~~----~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~  101 (337)
T 3mdy_A           31 VQRTIAKQIQMVKQIGKGRYGEVWMGKWRG-----EKVAVKVFFT----TEEASWFRETEIYQTVLMRHENILGFIAADI  101 (337)
T ss_dssp             HHTTHHHHCEEEEEEEEETTEEEEEEEETT-----EEEEEEEEEG----GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEE
T ss_pred             cccccccceEEEeEeecCCCeEEEEEEECC-----ceEEEEEEec----cccchhhhHHHHHHHHhhcCCCeeeEEEEEc
Confidence            333456789999999999999999998652     4455555432    2334555666666655  9999999999987


Q ss_pred             cCCC--CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc--------CCCceeecCCCCCcee
Q 011995          247 RDGS--DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE--------GPFQAMYNEFSTANIQ  316 (473)
Q Consensus       247 ~~~~--~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~--------~~~~ivHrDlkp~NIL  316 (473)
                      ....  ...++||||+++|+|.+++...    .+++..+..++.|++.||+|||++        +   |+||||||+|||
T Consensus       102 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dikp~Nil  174 (337)
T 3mdy_A          102 KGTGSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA---IAHRDLKSKNIL  174 (337)
T ss_dssp             ESCGGGCEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC---EECSCCCGGGEE
T ss_pred             cCCCCCCceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---EEecccchHHEE
Confidence            6532  5789999999999999999543    589999999999999999999998        7   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCc------cCcccccccCChhhhhcCCCCCc------CCchHHHHHHHHHHcC------
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDI------SNSSVAAANLSVETLERGLLTPK------SNVWSFGIVLLELLTG------  378 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~------~~~~~t~~y~aPE~~~~~~~s~~------sDvwSlGvvl~elltG------  378 (473)
                      ++.++.+||+|||++........      ....+|+.|+|||++.+..++..      +|||||||++|||++|      
T Consensus       175 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~  254 (337)
T 3mdy_A          175 VKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGI  254 (337)
T ss_dssp             ECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTB
T ss_pred             ECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccc
Confidence            99999999999999976643321      24478999999999988776665      9999999999999999      


Q ss_pred             ----CCCCCCCChHHH--HhHhhhcccccccccccccccccccCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          379 ----RKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       379 ----~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          +.||........  .......         ......+.+...+ ...++.++.+|+.+||+.||.+|||+.+|++.
T Consensus       255 ~~~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          255 VEEYQLPYHDLVPSDPSYEDMREIV---------CIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             CCCCCCTTTTTSCSSCCHHHHHHHH---------TTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             cccccccHhhhcCCCCchhhhHHHH---------hhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence                666644321110  0000000         0000111111111 23778899999999999999999999999999


Q ss_pred             HHhhhcccC
Q 011995          452 LDRQESRKS  460 (473)
Q Consensus       452 L~~l~~~~~  460 (473)
                      |+++.....
T Consensus       326 L~~l~~~~~  334 (337)
T 3mdy_A          326 LAKMSESQD  334 (337)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHhhcc
Confidence            999886543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.8e-42  Score=336.52  Aligned_cols=258  Identities=15%  Similarity=0.278  Sum_probs=207.8

Q ss_pred             hcccccCc-ceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDR-CISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~-~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+ .||+|+||.||+|.+... ...+.+++|+..... .....+.+.+|+.++..++||||+++++++. .  +
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~--~   90 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMK-KVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-A--E   90 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECS-SSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-S--S
T ss_pred             chhhhhccCccccccCeeeEeeeecCC-CceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-C--C
Confidence            46787777 999999999999965432 345666666665432 3344678999999999999999999999983 3  6


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++++|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        91 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~  164 (291)
T 1xbb_A           91 SWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLS  164 (291)
T ss_dssp             SEEEEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred             CcEEEEEeCCCCCHHHHHHhC---cCCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcc
Confidence            789999999999999999653   45899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccc
Q 011995          332 GHIPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       332 ~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ........     ....+++.|+|||.+.+..++.++|||||||++|||++ |+.||...........+....       
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-------  237 (291)
T 1xbb_A          165 KALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGE-------  237 (291)
T ss_dssp             EECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC-------
T ss_pred             eeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC-------
Confidence            87643321     22345678999999998889999999999999999999 999998766544333222110       


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                                ...++..++..+.+++.+||+.||.+||++.+|++.|+++...
T Consensus       238 ----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  280 (291)
T 1xbb_A          238 ----------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  280 (291)
T ss_dssp             ----------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence                      1112445668899999999999999999999999999988654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=8.4e-43  Score=339.13  Aligned_cols=266  Identities=13%  Similarity=0.100  Sum_probs=207.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+.....   ....+.+|+.++..++|++++..++++...+ ...
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~---~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~-~~~   80 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAA---GEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEG-DYN   80 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTT---TEEEEEEEEESCS---SCCHHHHHHHHHHHHTTSTTCCCEEEEEEET-TEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCC---CcEEEEEEecCCc---chhHHHHHHHHHHHhhcCCCCCccccccCCC-Cce
Confidence            57899999999999999999985433   3556666655432   2356889999999999999888887775543 788


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEeccCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGYGC  330 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DFGl  330 (473)
                      ++||||+ +++|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+|||+   +.++.+||+|||+
T Consensus        81 ~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~  154 (296)
T 3uzp_A           81 VMVMELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGL  154 (296)
T ss_dssp             EEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred             EEEEEec-CCCHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCC
Confidence            9999999 89999999632  346999999999999999999999999   9999999999999   4789999999999


Q ss_pred             CcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          331 AGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       331 a~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      +.......         .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||.................  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~--  232 (296)
T 3uzp_A          155 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE--  232 (296)
T ss_dssp             CEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHH--
T ss_pred             cccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcc--
Confidence            98764432         2345788999999999999999999999999999999999999986432211111100000  


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCC
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS  462 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~  462 (473)
                       .  .... ..+.    ....++.++.+++.+||+.||.+|||+.+|++.|+++..+...+
T Consensus       233 -~--~~~~-~~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~  285 (296)
T 3uzp_A          233 -K--KMST-PIEV----LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFS  285 (296)
T ss_dssp             -H--HHHS-CHHH----HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             -c--ccCC-chHH----HHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCc
Confidence             0  0000 0000    01234578999999999999999999999999999988776653

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=5.8e-43  Score=351.04  Aligned_cols=252  Identities=15%  Similarity=0.157  Sum_probs=189.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||+||++....   +.+.+++|+...  .......+.+|+.+++.++||||+++++++.+.  ...
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~vavK~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--~~~   91 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKL---TKELVAVKYIER--GAAIDENVQREIINHRSLRHPNIVRFKEVILTP--THL   91 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETT---TCCEEEEEEEES--STTSCHHHHHHHHHHHHCCCTTBCCEEEEEECS--SEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECC---CCcEEEEEEEec--CccccHHHHHHHHHHHhCCCCCCCcEEEEEeeC--CEE
Confidence            4579999999999999999999653   344555665543  233346788999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc--EEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS--AKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~--vkl~DFGla  331 (473)
                      ++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+++   |+||||||+|||++.++.  +||+|||++
T Consensus        92 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a  165 (361)
T 3uc3_A           92 AIIMEYASGGELYERICNA---GRFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYS  165 (361)
T ss_dssp             EEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC
T ss_pred             EEEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCcc
Confidence            9999999999999998542   35999999999999999999999999   999999999999987765  999999999


Q ss_pred             cccCCC-CccCcccccccCChhhhhcCCCCCc-CCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhcccccccccccc
Q 011995          332 GHIPET-DISNSSVAAANLSVETLERGLLTPK-SNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLADDCRLS  408 (473)
Q Consensus       332 ~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~-sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~  408 (473)
                      +..... ......+|+.|+|||++.+..++.+ +|||||||++|||++|+.||......... ..+..            
T Consensus       166 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~------------  233 (361)
T 3uc3_A          166 KSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQR------------  233 (361)
T ss_dssp             ---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHH------------
T ss_pred             ccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHH------------
Confidence            754322 3345578999999999988887655 89999999999999999999764432111 11110            


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                       +............++.++.+||.+||+.||.+|||+.|+++.
T Consensus       234 -~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          234 -ILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             -HHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             -HhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence             000000000112345788999999999999999999999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1e-42  Score=337.00  Aligned_cols=249  Identities=18%  Similarity=0.253  Sum_probs=205.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....+.   ..+++|+.....  .......+.+|++++..++||||+++++++.+.  +
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~---~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~   87 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNK---FIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDR--K   87 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTT---EEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--S
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCC---cEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcC--C
Confidence            468999999999999999999865433   344555543321  122346788999999999999999999999865  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++|+|.+++...   ..+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~  161 (284)
T 2vgo_A           88 RIYLMLEFAPRGELYKELQKH---GRFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWS  161 (284)
T ss_dssp             EEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEeccccc
Confidence            899999999999999999543   35899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ............+++.|+|||.+.+..++.++||||||+++|||++|..||...........+...              
T Consensus       162 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--------------  227 (284)
T 2vgo_A          162 VHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV--------------  227 (284)
T ss_dssp             EECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTT--------------
T ss_pred             ccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhcc--------------
Confidence            776555555667899999999999989999999999999999999999999876544432222110              


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +    ..++...+..+.+++.+||+.||.+|||+.++++.
T Consensus       228 ~----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          228 D----LKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             C----CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             c----cCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence            0    11234456789999999999999999999999873

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=338.93  Aligned_cols=267  Identities=20%  Similarity=0.228  Sum_probs=199.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||+||+|....+   ++.+++|+..... .....+.+.+|+.++.+++||||+++++++...  +.
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~   76 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDT---GQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRK--RR   76 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCC---CcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecC--Ce
Confidence            36799999999999999999996543   3455555544332 223356788999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus        77 ~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  150 (311)
T 4agu_A           77 LHLVFEYCDHTVLHELDRY---QRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFAR  150 (311)
T ss_dssp             EEEEEECCSEEHHHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEeCCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCch
Confidence            9999999999999988843   346899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc-c-------
Q 011995          333 HIPET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF-L-------  401 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~-~-------  401 (473)
                      .....  ......+|..|+|||.+.+ ..++.++|||||||++|||++|..||.+.........+...... .       
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (311)
T 4agu_A          151 LLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVF  230 (311)
T ss_dssp             ECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             hccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccccc
Confidence            76432  2234578899999999976 56899999999999999999999999887665544333211000 0       


Q ss_pred             ccccccccccccccCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...........+......     ...++..+.+|+.+||+.||.+|||++|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          231 STNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             HTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             ccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            000000000000000000     12456779999999999999999999999864

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=4e-42  Score=335.96  Aligned_cols=250  Identities=22%  Similarity=0.345  Sum_probs=208.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +.|...+.||+|+||.||+|....   ..+.+++|+..........+.+.+|+.++..++||||+++++++...  ...+
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~   96 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNR---TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD--TKLW   96 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETT---TCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECC---CCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC--CeEE
Confidence            468888999999999999998543   34556677766655556678899999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++++|.+++..    ..+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.+||+|||++...
T Consensus        97 lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~  169 (303)
T 3a7i_A           97 IIMEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQL  169 (303)
T ss_dssp             EEEECCTTEEHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceec
Confidence            99999999999999842    46999999999999999999999999   999999999999999999999999999776


Q ss_pred             CCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ....  .....+++.|+|||.+.+..++.++|||||||++|||++|..||...........+....             .
T Consensus       170 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-------------~  236 (303)
T 3a7i_A          170 TDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNN-------------P  236 (303)
T ss_dssp             BTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-------------C
T ss_pred             CccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCC-------------C
Confidence            5432  234568899999999999999999999999999999999999998765544332221100             0


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      +    .++..++..+.+|+.+||..||.+|||+.++++..-
T Consensus       237 ~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~  273 (303)
T 3a7i_A          237 P----TLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF  273 (303)
T ss_dssp             C----CCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHH
T ss_pred             C----CCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChh
Confidence            1    112344578999999999999999999999998644

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=3e-43  Score=347.80  Aligned_cols=265  Identities=17%  Similarity=0.224  Sum_probs=196.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|...+.||+|+||+||+|....+   .+.+++|+............+.+|+.+++.++||||+++++++...  +..+
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~   76 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLT---DNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE--KSLT   76 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECS--SCEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCC---CcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeC--CEEE
Confidence            5789999999999999999986543   3455666665444434444667899999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||++ |+|.+++...  ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++...
T Consensus        77 lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  150 (324)
T 3mtl_A           77 LVFEYLD-KDLKQYLDDC--GNIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAK  150 (324)
T ss_dssp             EEEECCS-EEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC
T ss_pred             EEecccc-cCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccc
Confidence            9999996 5999888653  346899999999999999999999999   999999999999999999999999998765


Q ss_pred             CCC--CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc-----
Q 011995          335 PET--DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR-----  406 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----  406 (473)
                      ...  ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+....+............     
T Consensus       151 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  230 (324)
T 3mtl_A          151 SIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS  230 (324)
T ss_dssp             ------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             cCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhc
Confidence            432  2334577999999999976 56899999999999999999999999987765544433211100000000     


Q ss_pred             ---cccccccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          407 ---LSLIMDPQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       407 ---~~~~~~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                         ......+....    ......+.++.+|+.+||+.||.+|||+.|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          231 NEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             CHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             chhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence               00000000000    001235678899999999999999999999987

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.9e-43  Score=357.67  Aligned_cols=261  Identities=16%  Similarity=0.177  Sum_probs=206.0

Q ss_pred             HHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          167 LDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       167 ~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      +.++....++|+..+.||+|+||.||+|+...   +++.+++|+.....  .......+.+|+.++..++||||++++++
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~---~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~  129 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQ---TGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFA  129 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEE
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECC---CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEE
Confidence            34444557899999999999999999999654   34556666654321  12234568899999999999999999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      +.+.  +.+||||||+++|+|.+++...  +..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+|
T Consensus       130 ~~~~--~~~~lVmE~~~gg~L~~~l~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vk  202 (412)
T 2vd5_A          130 FQDE--NYLYLVMEYYVGGDLLTLLSKF--GERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIR  202 (412)
T ss_dssp             EECS--SEEEEEECCCCSCBHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEE
T ss_pred             EeeC--CEEEEEEcCCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEE
Confidence            9876  7899999999999999999642  346999999999999999999999999   99999999999999999999


Q ss_pred             EeccCCCcccCCCCc---cCcccccccCChhhhh-------cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh
Q 011995          325 LSGYGCAGHIPETDI---SNSSVAAANLSVETLE-------RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV  394 (473)
Q Consensus       325 l~DFGla~~~~~~~~---~~~~~t~~y~aPE~~~-------~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~  394 (473)
                      |+|||++........   ...++|+.|+|||++.       +..++.++|||||||++|||++|+.||......+....+
T Consensus       203 L~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i  282 (412)
T 2vd5_A          203 LADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKI  282 (412)
T ss_dssp             ECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHH
T ss_pred             EeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            999999987654322   3457899999999997       356899999999999999999999999887665543332


Q ss_pred             hhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCC---CCHHHHHHH
Q 011995          395 KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER---PTMRSIFEE  451 (473)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~R---Pt~~eil~~  451 (473)
                      ......         ..-+    .++..++.++.+||.+||. +|.+|   |+++||++.
T Consensus       283 ~~~~~~---------~~~p----~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          283 VHYKEH---------LSLP----LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             HTHHHH---------CCCC--------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred             HhcccC---------cCCC----ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence            211000         0000    0123456889999999999 99998   589998753

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=5.4e-43  Score=349.01  Aligned_cols=268  Identities=14%  Similarity=0.136  Sum_probs=199.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCCh----------hhHhHHHHHHHHHhCCCCCccccee
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQ----------GVKEFINDVNTLASLQHPNLCKLLG  243 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~Ei~~l~~l~HpnIv~l~g  243 (473)
                      .++|...+.||+|+||.||+|...........+++|+........          ....+.+|+.++..++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            367999999999999999999986544455566666665432210          1234678889999999999999999


Q ss_pred             eeecC--CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC
Q 011995          244 FHARD--GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       244 ~~~~~--~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                      ++...  +....++||||+ +++|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~  188 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQN---GTFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKN  188 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGG---GBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSS
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCC
Confidence            98762  237899999999 99999999543   27999999999999999999999999   99999999999998877


Q ss_pred             --cEEEeccCCCcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH
Q 011995          322 --SAKLSGYGCAGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE  390 (473)
Q Consensus       322 --~vkl~DFGla~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~  390 (473)
                        .+||+|||+++.+....         .....+|+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus       189 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~  268 (345)
T 2v62_A          189 PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPV  268 (345)
T ss_dssp             TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHH
T ss_pred             CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccH
Confidence              99999999997653221         1344788999999999999999999999999999999999999964322111


Q ss_pred             --HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          391 --RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       391 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                        .............      .......   ...++.++.+++.+||..||.+|||+.+|++.|+.+..
T Consensus       269 ~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          269 AVQTAKTNLLDELPQ------SVLKWAP---SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HHHHHHHHHHHTTTH------HHHHHSC---TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhhcccccH------HHHhhcc---ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence              1111100000000      0000000   11345789999999999999999999999999998764

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.9e-43  Score=345.33  Aligned_cols=278  Identities=19%  Similarity=0.259  Sum_probs=209.1

Q ss_pred             hcccccCcceeecCCceEEEEEECC-CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD-DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|.+.. +...++.+++|+... ......+.+.+|+++++.++||||+++++++...+...
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESS-CCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEecc-CCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            4578889999999999999998643 233455666665543 24455678999999999999999999999987765568


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++...  ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~  193 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTK  193 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHS--TTSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             eEEEEECCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchh
Confidence            89999999999999999653  346899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          333 HIPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       333 ~~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .......     ....++..|+|||.+.+..++.++|||||||++|||++|..||......... ..............+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  272 (326)
T 2w1i_A          194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMR-MIGNDKQGQMIVFHL  272 (326)
T ss_dssp             ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHH-HHCTTCCTHHHHHHH
T ss_pred             hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHH-hhccccchhhhHHHH
Confidence            7654321     2234567899999999888999999999999999999999988643111100 000000000000000


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ...+........+..++.++.+++.+||..||.+|||+.+|++.|+++..+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          273 IELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            011111111122445678899999999999999999999999999998754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=5.3e-43  Score=339.66  Aligned_cols=261  Identities=18%  Similarity=0.291  Sum_probs=201.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||+||+|.+.........+++|+....  ......+.+.+|+.++..++||||+++++++...   
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---   93 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP---   93 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC---
Confidence            46799999999999999999986543333333444444332  1345567899999999999999999999998753   


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+++   |+|+||||+|||++.++.+||+|||++
T Consensus        94 ~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~  168 (291)
T 1u46_A           94 PMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLM  168 (291)
T ss_dssp             SCEEEEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             CceeeEecccCCCHHHHHHhc--cCCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEcccccc
Confidence            488999999999999999643  345899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccc
Q 011995          332 GHIPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       332 ~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ........     ....++..|+|||.+.+..++.++||||||+++|||++ |+.||...........+....       
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-------  241 (291)
T 1u46_A          169 RALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEG-------  241 (291)
T ss_dssp             EECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSC-------
T ss_pred             ccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccC-------
Confidence            87644321     23355678999999998889999999999999999999 999998776544332221110       


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                               .....+..++.++.+++.+||..||.+|||+.++++.|+++...
T Consensus       242 ---------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          242 ---------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             ---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             ---------CCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence                     00111334568899999999999999999999999999987654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.4e-42  Score=332.97  Aligned_cols=252  Identities=17%  Similarity=0.192  Sum_probs=202.0

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|...+.||+|+||.||+|....+.   ..+++++.... .....+.+.+|+++++.++||||+++++++.+.  ..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~---~~~a~k~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~~   80 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTR---IRRAAKKIPKY-FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN--TD   80 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTC---CEEEEEEEEGG-GCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--SE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCC---cEEEEEeehhh-ccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC--Ce
Confidence            3567999999999999999999965543   33444444332 223457889999999999999999999999865  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DFG  329 (473)
                      .++||||+++++|.+++..   ...+++..+..++.|++.||.|||+++   |+||||||+|||+   +.++.+||+|||
T Consensus        81 ~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg  154 (277)
T 3f3z_A           81 IYLVMELCTGGELFERVVH---KRVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFG  154 (277)
T ss_dssp             EEEEEECCCSCBHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred             EEEEEeccCCCcHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecc
Confidence            9999999999999998854   345899999999999999999999999   9999999999999   788999999999


Q ss_pred             CCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          330 CAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       330 la~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++...... ......+|+.|+|||.+.+. ++.++|||||||++|||++|..||......+....+.........     
T Consensus       155 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-----  228 (277)
T 3f3z_A          155 LAARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPE-----  228 (277)
T ss_dssp             TCEECCTTSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCH-----
T ss_pred             cceeccCccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCc-----
Confidence            99876543 33455789999999998654 899999999999999999999999876655433322211100000     


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                               .....++..+.+|+.+||+.||.+|||+.++++.
T Consensus       229 ---------~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          229 ---------KDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             ---------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             ---------hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                     0001345789999999999999999999999863

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-43  Score=345.04  Aligned_cols=246  Identities=15%  Similarity=0.159  Sum_probs=191.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||+||+|....+   .+.+++|+..... .......+..|+..+..+ +|+||+++++++.+.  +
T Consensus        56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~--~  130 (311)
T 3p1a_A           56 QQSFQRLSRLGHGSYGEVFKVRSKED---GRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG--G  130 (311)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTT---SCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--T
T ss_pred             hhheeeeheeccCCCeEEEEEEECCC---CeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC--C
Confidence            36899999999999999999997643   3445566544332 233344566666666665 999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+ +++|.+++...  ...+++..+..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||++
T Consensus       131 ~~~lv~e~~-~~~L~~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a  204 (311)
T 3p1a_A          131 ILYLQTELC-GPSLQQHCEAW--GASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLL  204 (311)
T ss_dssp             EEEEEEECC-CCBHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTC
T ss_pred             EEEEEEecc-CCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceee
Confidence            899999999 77999888653  346999999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....... .....+|+.|+|||++.+ .++.++|||||||++|||++|..++.......  .+..               
T Consensus       205 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~--~~~~---------------  266 (311)
T 3p1a_A          205 VELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQ--QLRQ---------------  266 (311)
T ss_dssp             EECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHH--HHTT---------------
T ss_pred             eecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHH--HHhc---------------
Confidence            7764433 234468999999999875 78999999999999999999977665422111  0000               


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                        ......++..++.++.+|+.+||+.||++|||+.|+++
T Consensus       267 --~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          267 --GYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             --TCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --cCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence              00001112235678999999999999999999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-43  Score=348.11  Aligned_cols=245  Identities=16%  Similarity=0.240  Sum_probs=201.1

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-------ChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-------SQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      ...++|...+.||+|+||.||+|....+   .+.+++|+......       ......+.+|+.+++.++||||++++++
T Consensus        21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~   97 (335)
T 3dls_A           21 EYSQKYSTMSPLGSGAFGFVWTAVDKEK---NKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDI   97 (335)
T ss_dssp             HHHHHEEEEEECSSSSSCSEEEEEETTT---TEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccccceEEEeEEEecCCEEEEEEEECCC---CcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            3467899999999999999999985443   45566666654321       1234578899999999999999999999


Q ss_pred             eecCCCCceEEEEEeccCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcE
Q 011995          245 HARDGSDQRMLIYERLFHG-SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      +.+.  +..++||||+.+| +|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+
T Consensus        98 ~~~~--~~~~lv~e~~~~g~~l~~~~~~---~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~  169 (335)
T 3dls_A           98 FENQ--GFFQLVMEKHGSGLDLFAFIDR---HPRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTI  169 (335)
T ss_dssp             EECS--SEEEEEEECCTTSCBHHHHHHT---CCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCE
T ss_pred             EeeC--CEEEEEEEeCCCCccHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcE
Confidence            9866  7899999999777 99999854   346999999999999999999999999   9999999999999999999


Q ss_pred             EEeccCCCcccCCCC-ccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          324 KLSGYGCAGHIPETD-ISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       324 kl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      ||+|||++....... .....+|+.|+|||++.+..+ +.++|||||||++|||++|..||.......     .      
T Consensus       170 kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-----~------  238 (335)
T 3dls_A          170 KLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV-----E------  238 (335)
T ss_dssp             EECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT-----T------
T ss_pred             EEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH-----h------
Confidence            999999998765443 334578999999999988776 789999999999999999999996521100     0      


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             ...      ..+..++.++.+|+.+||+.||.+|||+.++++.
T Consensus       239 -------~~~------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          239 -------AAI------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             -------TCC------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             -------hcc------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                   000      0122355789999999999999999999999985

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.1e-42  Score=347.14  Aligned_cols=249  Identities=22%  Similarity=0.289  Sum_probs=200.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      +.|...+.||+|+||.||+|....   ..+.+++|+......  ....+.+.+|+++++.++||||+++++++...  +.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--~~  128 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVR---NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE--HT  128 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETT---TTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TE
T ss_pred             hheeeeeEEccCCCEEEEEEEEcc---CCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC--Ce
Confidence            558888999999999999998543   334566666654322  23346789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+. |+|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus       129 ~~lv~e~~~-g~l~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~  202 (348)
T 1u5q_A          129 AWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSAS  202 (348)
T ss_dssp             EEEEEECCS-EEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCB
T ss_pred             EEEEEecCC-CCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCce
Confidence            999999996 6888887532  346999999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCCCccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....  .....+|+.|+|||++.   ++.++.++|||||||++|||++|..||...........+....           
T Consensus       203 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~-----------  269 (348)
T 1u5q_A          203 IMAP--ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE-----------  269 (348)
T ss_dssp             SSSS--BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-----------
T ss_pred             ecCC--CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcC-----------
Confidence            7643  24457899999999985   4678999999999999999999999998766544322111100           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                        .+.+   .+...+..+.+|+.+||+.||.+|||+.++++..
T Consensus       270 --~~~~---~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~  307 (348)
T 1u5q_A          270 --SPAL---QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  307 (348)
T ss_dssp             --CCCC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred             --CCCC---CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence              0001   1223457889999999999999999999998753

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-42  Score=340.85  Aligned_cols=260  Identities=16%  Similarity=0.157  Sum_probs=198.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+.....  .....+.+.+|+.++..++||||+++++++..+  +
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~--~  107 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVR---ERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID--G  107 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTT---TEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--T
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCC---CeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC--C
Confidence            57899999999999999999986543   3455565554321  223347789999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++++|.+++...   ..+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~  181 (309)
T 2h34_A          108 QLYVDMRLINGVDLAAMLRRQ---GPLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIA  181 (309)
T ss_dssp             EEEEEEECCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC-
T ss_pred             eEEEEEEecCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccC
Confidence            899999999999999999543   46899999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          332 GHIPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       332 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......   .....+++.|+|||.+.+..++.++||||||+++|||++|+.||...........+....+         
T Consensus       182 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~---------  252 (309)
T 2h34_A          182 SATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIP---------  252 (309)
T ss_dssp             ---------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCC---------
T ss_pred             ccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCC---------
Confidence            7664432   2344678999999999988899999999999999999999999987544322221111100         


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhccc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-TMRSIFEELDRQESRK  459 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~l~~~~  459 (473)
                            ....++..++.++.+++.+||..||.+|| +++++++.|+.+....
T Consensus       253 ------~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~  298 (309)
T 2h34_A          253 ------RPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA  298 (309)
T ss_dssp             ------CGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred             ------CccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence                  00112334557899999999999999999 9999999999876544

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.1e-42  Score=344.50  Aligned_cols=266  Identities=15%  Similarity=0.179  Sum_probs=193.8

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      ..++|...+.||+|+||+||+|....+   .+.+++|+..... .......+.+|+.+++.++||||+++++++...  +
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~  106 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVT---NETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN--H  106 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTT---TEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET--T
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCC---CceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC--C
Confidence            357899999999999999999985443   4555666655433 233356788999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee-----CCCCcEEEe
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI-----DKDFSAKLS  326 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl-----~~~~~vkl~  326 (473)
                      ..++||||++ |+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||+     +.++.+||+
T Consensus       107 ~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~  179 (329)
T 3gbz_A          107 RLHLIFEYAE-NDLKKYMDKN---PDVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIG  179 (329)
T ss_dssp             EEEEEEECCS-EEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEEC
T ss_pred             EEEEEEecCC-CCHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEEC
Confidence            8999999997 5999999643   35999999999999999999999999   9999999999999     455669999


Q ss_pred             ccCCCcccCCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          327 GYGCAGHIPET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       327 DFGla~~~~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |||++......  ......+|+.|+|||++.+.. ++.++|||||||++|||++|..||...........+.........
T Consensus       180 Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~  259 (329)
T 3gbz_A          180 DFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDD  259 (329)
T ss_dssp             CTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCT
T ss_pred             cCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCch
Confidence            99999765422  234456799999999998754 899999999999999999999999887655443322111000000


Q ss_pred             ccc------------cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCR------------LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~------------~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...            ........+...++...+.++.+|+.+||+.||.+|||+.|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          260 TTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             TTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            000            00000000000111225678899999999999999999999986

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=346.00  Aligned_cols=249  Identities=19%  Similarity=0.321  Sum_probs=195.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCC--CCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQH--PNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~H--pnIv~l~g~~~~~~~  250 (473)
                      .++|++.+.||+|+||.||++...+    ...+++|+..... .......+.+|+.+|..++|  +||+++++++...  
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~--   81 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEK----KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD--   81 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTT----SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCC----CCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeC--
Confidence            4679999999999999999998543    3456666665543 34455788999999999976  9999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||| +.+|+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++ ++.+||+|||+
T Consensus        82 ~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~  153 (343)
T 3dbq_A           82 QYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGI  153 (343)
T ss_dssp             SEEEEEEC-CCSEEHHHHHHHS---CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSS
T ss_pred             CEEEEEEe-CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeeccc
Confidence            78999999 5588999999653   46899999999999999999999999   99999999999997 57899999999


Q ss_pred             CcccCCCC----ccCcccccccCChhhhhc-----------CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          331 AGHIPETD----ISNSSVAAANLSVETLER-----------GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       331 a~~~~~~~----~~~~~~t~~y~aPE~~~~-----------~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      +.......    .....+|+.|+|||++.+           ..++.++|||||||++|||++|+.||.........    
T Consensus       154 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~----  229 (343)
T 3dbq_A          154 ANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISK----  229 (343)
T ss_dssp             SCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHH----
T ss_pred             ccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHH----
Confidence            98764332    234578999999999975           66889999999999999999999999764332111    


Q ss_pred             hcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          396 WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                 +..+.++.....++...+.++.+|+.+||+.||.+|||+.++++.
T Consensus       230 -----------~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          230 -----------LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             -----------HHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -----------HHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence                       011111222223344445788999999999999999999999865

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.1e-42  Score=357.93  Aligned_cols=267  Identities=16%  Similarity=0.179  Sum_probs=185.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|++.+.||+|+||+||+|....   +.+.+++|+.... ......+.+.+|+.+|+.++|||||++++++....   
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~  128 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKL---EKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEK  128 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC-----CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTT
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECC---CCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCccc
Confidence            3689999999999999999998543   4456666655433 23344578899999999999999999999985432   


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ...+|+||||+ +|+|.+++..   ...+++..+..++.||+.||.|||+.+   ||||||||+||||+.++.+||+|||
T Consensus       129 ~~~~~lv~e~~-~~~L~~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFG  201 (458)
T 3rp9_A          129 FDELYVVLEIA-DSDFKKLFRT---PVYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFG  201 (458)
T ss_dssp             CCCEEEEECCC-SEEHHHHHHS---SCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCT
T ss_pred             CceEEEEEecc-ccchhhhccc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccc
Confidence            25789999998 5799999854   346999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC-----------------------------CccCcccccccCChhhh-hcCCCCCcCCchHHHHHHHHHHc--
Q 011995          330 CAGHIPET-----------------------------DISNSSVAAANLSVETL-ERGLLTPKSNVWSFGIVLLELLT--  377 (473)
Q Consensus       330 la~~~~~~-----------------------------~~~~~~~t~~y~aPE~~-~~~~~s~~sDvwSlGvvl~ellt--  377 (473)
                      +++.....                             .....++|++|+|||++ .+..++.++|||||||++|||++  
T Consensus       202 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~  281 (458)
T 3rp9_A          202 LARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMI  281 (458)
T ss_dssp             TCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTS
T ss_pred             cchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhc
Confidence            99876421                             12344679999999987 45669999999999999999999  


Q ss_pred             ---------CCCCCCCCChH--------------------HHHhHhhh-c-ccccc------cc--cc----cccccccc
Q 011995          378 ---------GRKNLDSRHPK--------------------EERNLVKW-S-RPFLA------DD--CR----LSLIMDPQ  414 (473)
Q Consensus       378 ---------G~~p~~~~~~~--------------------~~~~~~~~-~-~~~~~------~~--~~----~~~~~~~~  414 (473)
                               |.++|.+....                    .....+.. . .+...      ..  ..    +.......
T Consensus       282 ~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (458)
T 3rp9_A          282 KENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTD  361 (458)
T ss_dssp             TTTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCC
T ss_pred             cccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCC
Confidence                     67777654310                    00000000 0 00000      00  00    00000000


Q ss_pred             cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          415 LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       415 l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +... ....+.++.+|+.+||+.||.+|||+.|+|+.
T Consensus       362 ~~~~-~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~H  397 (458)
T 3rp9_A          362 LAER-FPASSADAIHLLKRMLVFNPNKRITINECLAH  397 (458)
T ss_dssp             GGGG-STTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHH-CCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            1111 12346889999999999999999999999984

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.8e-42  Score=333.26  Aligned_cols=253  Identities=17%  Similarity=0.193  Sum_probs=203.4

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|+..+.||+|+||.||+|....+   .+.+++|+..........+.+.+|+.+++.++||||+++++++.+.  +.
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   79 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVT---EEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--NI   79 (276)
T ss_dssp             HHHHEEEEEEEEECSSSEEEEEEETTT---CCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--TE
T ss_pred             eecceEEEEEeecCCCcEEEEEEECCC---CcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC--CE
Confidence            357899999999999999999986543   3455666665544445567899999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..   ...+++..+..++.|++.||.|||+++   |+|+||||+|||++.++.+||+|||++.
T Consensus        80 ~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~  153 (276)
T 2yex_A           80 QYLFLEYCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLAT  153 (276)
T ss_dssp             EEEEEECCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEecCCCcHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCcc
Confidence            8999999999999999843   346899999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCC----CccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          333 HIPET----DISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       333 ~~~~~----~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .....    ......+++.|+|||.+.+..+ +.++|||||||++|||++|..||......... ...|....       
T Consensus       154 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-~~~~~~~~-------  225 (276)
T 2yex_A          154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-YSDWKEKK-------  225 (276)
T ss_dssp             ECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHH-HHHHHTTC-------
T ss_pred             ccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHH-HHHhhhcc-------
Confidence            65322    1234568899999999987665 77899999999999999999999865432211 11111100       


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             .........+..+.+|+.+||+.||.+|||+.++++.
T Consensus       226 -------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          226 -------TYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             -------TTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             -------cccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence                   0000123456788999999999999999999999863

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.5e-42  Score=348.63  Aligned_cols=269  Identities=18%  Similarity=0.171  Sum_probs=202.4

Q ss_pred             hcccccCcceeec--CCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEG--LSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G--~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      .++|++.+.||+|  +||.||+|....   .++.+++|+..... .......+.+|+.+++.++|||||++++++.+.  
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~--   98 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKP---TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD--   98 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETT---TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcC---CCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC--
Confidence            4689999999999  999999999654   34556677665543 334456788999999999999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..++||||+++|+|.+++... ....+++..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~  174 (389)
T 3gni_B           99 NELWVVTSFMAYGSAKDLICTH-FMDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRS  174 (389)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGG
T ss_pred             CEEEEEEEccCCCCHHHHHhhh-cccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEccccc
Confidence            7899999999999999999654 2346999999999999999999999999   99999999999999999999999998


Q ss_pred             CcccCCC---------CccCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hcc
Q 011995          331 AGHIPET---------DISNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSR  398 (473)
Q Consensus       331 a~~~~~~---------~~~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~  398 (473)
                      +......         ......+|+.|+|||++.+  ..++.++|||||||++|||++|+.||.+.........+. ...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  254 (389)
T 3gni_B          175 NLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTV  254 (389)
T ss_dssp             CEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----
T ss_pred             ceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCC
Confidence            7543211         1223467889999999987  578999999999999999999999998755433221110 000


Q ss_pred             cccccccc------------------ccccc---------ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PFLADDCR------------------LSLIM---------DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~~~~~~~------------------~~~~~---------~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      +...+...                  .....         .......++..++..+.+||.+||+.||.+|||+.|+++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          255 PCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             ---------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence            00000000                  00000         0000011344567889999999999999999999999865

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=2.2e-42  Score=350.48  Aligned_cols=248  Identities=20%  Similarity=0.325  Sum_probs=195.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCC--CCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQ--HPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~--HpnIv~l~g~~~~~~~~  251 (473)
                      .+|.+.+.||+|+||.||+|...+    ...+++|+..... .......+.+|+.+|..++  |+|||++++++...  +
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~----~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~--~  129 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEK----KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD--Q  129 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTT----CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--S
T ss_pred             CceEEEEEEccCCCeEEEEEEcCC----CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecC--C
Confidence            469999999999999999998543    4456677665543 3445678999999999996  59999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+||||| +.+++|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++ ++.+||+|||++
T Consensus       130 ~~~lv~E-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a  201 (390)
T 2zmd_A          130 YIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIA  201 (390)
T ss_dssp             EEEEEEE-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSS
T ss_pred             EEEEEEe-cCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCcc
Confidence            8999999 5688999999653   36899999999999999999999999   99999999999996 579999999999


Q ss_pred             cccCCCC----ccCcccccccCChhhhhc-----------CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          332 GHIPETD----ISNSSVAAANLSVETLER-----------GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       332 ~~~~~~~----~~~~~~t~~y~aPE~~~~-----------~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      ..+....    .....+|+.|+|||++.+           ..++.++|||||||++|||++|+.||......... +   
T Consensus       202 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~-~---  277 (390)
T 2zmd_A          202 NQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISK-L---  277 (390)
T ss_dssp             CCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH-H---
T ss_pred             ccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHH-H---
Confidence            8764332    234578999999999975           36889999999999999999999999765332111 0   


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                 ..+.++.....++...+.++.+||.+||+.||.+|||+.|+++.
T Consensus       278 -----------~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          278 -----------HAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             -----------HHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -----------HHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence                       01111111122233345789999999999999999999999864

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=3e-42  Score=369.78  Aligned_cols=251  Identities=16%  Similarity=0.296  Sum_probs=203.7

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      +.||+|+||.||+|.+... ...+.+++|+..... .....+++.+|+++|.+++|||||++++++..   +..+|||||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~---~~~~lv~E~  450 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMK-KVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA---ESWMLVMEM  450 (635)
T ss_dssp             EEEEECSSEEEEEEEEECS-SCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES---SSEEEEEEC
T ss_pred             CEeccCCCEEEEEEEEcCC-CcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCEEEEEEc
Confidence            5799999999999976433 345666677665432 23345789999999999999999999999864   468999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCC-
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD-  338 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~-  338 (473)
                      +++|+|.+++..   ...+++..+..|+.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.+.... 
T Consensus       451 ~~~g~L~~~l~~---~~~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~  524 (635)
T 4fl3_A          451 AELGPLNKYLQQ---NRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  524 (635)
T ss_dssp             CTTEEHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---
T ss_pred             cCCCCHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCcc
Confidence            999999999954   346899999999999999999999999   9999999999999999999999999998764332 


Q ss_pred             ----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          339 ----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       339 ----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                          .....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+....               
T Consensus       525 ~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~---------------  589 (635)
T 4fl3_A          525 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGE---------------  589 (635)
T ss_dssp             ----------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC---------------
T ss_pred             ccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC---------------
Confidence                122345678999999999999999999999999999998 999998876655443332110               


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                        ...++..++.++.+||.+||+.||++||++.+|++.|+++...
T Consensus       590 --~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  632 (635)
T 4fl3_A          590 --RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  632 (635)
T ss_dssp             --CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             --CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence              1122445668899999999999999999999999999987643

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=7.7e-43  Score=347.52  Aligned_cols=252  Identities=17%  Similarity=0.270  Sum_probs=198.8

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ..++|+..+.||+|+||.||+|....+   .+.+++|+.....     ..+.+|++++.++ +||||+++++++.+.  +
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~--~   89 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKAT---NMEFAVKIIDKSK-----RDPTEEIEILLRYGQHPNIITLKDVYDDG--K   89 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEETTT-----CCCHHHHHHHHHHTTSTTBCCEEEEEECS--S
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCC---CCEEEEEEEEccc-----CChHHHHHHHHHhcCCCCcCeEEEEEEcC--C
Confidence            467899999999999999999996543   4566666664322     3456799999888 799999999999765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC----CcEEEec
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD----FSAKLSG  327 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~----~~vkl~D  327 (473)
                      ..|+||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||+..+    +.+||+|
T Consensus        90 ~~~lv~E~~~gg~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~D  163 (342)
T 2qr7_A           90 YVYVVTELMKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICD  163 (342)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC---TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECC
T ss_pred             EEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEE
Confidence            899999999999999999543   46999999999999999999999999   9999999999998433    3599999


Q ss_pred             cCCCcccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          328 YGCAGHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       328 FGla~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ||++......  ......+|+.|+|||++.+..++.++|||||||++|||++|..||..........+.....    .+ 
T Consensus       164 fg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~----~~-  238 (342)
T 2qr7_A          164 FGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIG----SG-  238 (342)
T ss_dssp             CTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHH----HC-
T ss_pred             CCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHc----cC-
Confidence            9999876433  2345578999999999988888999999999999999999999997643211111111100    00 


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                            ...+...+...++.++.+|+.+||..||.+|||+.++++.
T Consensus       239 ------~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          239 ------KFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             ------CCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             ------CcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                  0011112234567889999999999999999999999874

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.6e-42  Score=331.87  Aligned_cols=260  Identities=17%  Similarity=0.244  Sum_probs=204.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-----ChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-----SQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+......     ....+.+.+|+.+++.++||||+++++++...
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   80 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGT---GKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK   80 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCC---CCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCC
Confidence            36799999999999999999996543   34455665544321     12357799999999999999999999999875


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC----cEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF----SAK  324 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~----~vk  324 (473)
                        ...++||||+++++|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++    .+|
T Consensus        81 --~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~k  152 (283)
T 3bhy_A           81 --TDVVLILELVSGGELFDFLAE---KESLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIK  152 (283)
T ss_dssp             --SEEEEEEECCCSCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEE
T ss_pred             --CeEEEEEeecCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceE
Confidence              789999999999999999954   346899999999999999999999999   99999999999998877    899


Q ss_pred             EeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          325 LSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       325 l~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+|||++...... ......+++.|+|||.+.+..++.++||||||+++|||++|..||...........+.....    
T Consensus       153 l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~----  228 (283)
T 3bhy_A          153 LIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY----  228 (283)
T ss_dssp             ECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC----
T ss_pred             EEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhccc----
Confidence            9999999876433 23445688999999999988999999999999999999999999987665443322221100    


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhhcc
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE--ELDRQESR  458 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~--~L~~l~~~  458 (473)
                                ..........+..+.+|+.+||..||.+|||+.++++  .++.+..+
T Consensus       229 ----------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~  275 (283)
T 3bhy_A          229 ----------DFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRR  275 (283)
T ss_dssp             ----------CCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred             ----------CCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence                      0000001234577899999999999999999999997  45555443

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2.4e-42  Score=338.61  Aligned_cols=265  Identities=19%  Similarity=0.233  Sum_probs=198.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|.+.+.||+|+||.||+|....+   ++.+++|+.....  .......+.+|+.+++.++||||+++++++...  +
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--~  105 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLD---GVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED--N  105 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTT---CCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--T
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCC---CceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC--C
Confidence            45799999999999999999986443   3455566655422  334567789999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ..++||||+++|+|.+++... .....+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.+||+|||+
T Consensus       106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~  182 (310)
T 2wqm_A          106 ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGL  182 (310)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC--
T ss_pred             cEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccc
Confidence            899999999999999998532 12456899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +.......  .....+++.|+|||.+.+..++.++|||||||++|||++|..||.+....... .....    .      
T Consensus       183 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~-~~~~~----~------  251 (310)
T 2wqm_A          183 GRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYS-LCKKI----E------  251 (310)
T ss_dssp             ----------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHH-HHHHH----H------
T ss_pred             eeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHH-HHHHh----h------
Confidence            87664332  23446789999999999989999999999999999999999999754321111 11100    0      


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                         ............+.++.+++.+||..||.+|||+.+|++.|+++.....
T Consensus       252 ---~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~  300 (310)
T 2wqm_A          252 ---QCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA  300 (310)
T ss_dssp             ---TTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             ---cccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence               0000000123455789999999999999999999999999999876544

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.8e-42  Score=334.25  Aligned_cols=254  Identities=20%  Similarity=0.326  Sum_probs=198.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|...+     ..+++|+..  . ....+.+.+|+.++..++||||+++++++.... +..
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~vavK~~~--~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   90 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYRG-----NKVAVKCIK--N-DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-GGL   90 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETT-----EEEEEEECC--C-CC--HHHHHTHHHHTTCCCTTBCCEEEEECCC---CC
T ss_pred             hhhceEEeEEecCCCceEEEEEEcC-----CEEEEEEec--c-hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC-Cce
Confidence            4689999999999999999998642     334444433  2 234577999999999999999999999876542 578


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++|+|.+++.... ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~  166 (278)
T 1byg_A           91 YIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKE  166 (278)
T ss_dssp             EEEECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             EEEEecCCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeecccccc
Confidence            99999999999999995431 223789999999999999999999999   99999999999999999999999999876


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..... ....+++.|+|||.+.+..++.++||||||+++|||++ |..||...........+..                
T Consensus       167 ~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~----------------  229 (278)
T 1byg_A          167 ASSTQ-DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK----------------  229 (278)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT----------------
T ss_pred             ccccc-cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhc----------------
Confidence            54322 23356789999999999999999999999999999998 9999987654332222110                


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                       ......+..++..+.+++.+||+.||.+|||+.++++.|+++...
T Consensus       230 -~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          230 -GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             -TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -CCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence             001122345568899999999999999999999999999998754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.5e-42  Score=335.15  Aligned_cols=255  Identities=17%  Similarity=0.231  Sum_probs=203.3

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeec-----
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR-----  247 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~-----  247 (473)
                      ..++|+..+.||+|+||.||+|....+   .+.+++|+....     ...+.+|++++..++||||+++++++..     
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   80 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRID---GKTYVIKRVKYN-----NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDP   80 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTT---CCEEEEEEEECC-----SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-
T ss_pred             hccccceeeeeccCCceEEEEEEEcCC---CeEEEEEEeccc-----cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCc
Confidence            456899999999999999999997533   344555555432     2567899999999999999999998754     


Q ss_pred             ---------CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC
Q 011995          248 ---------DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID  318 (473)
Q Consensus       248 ---------~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~  318 (473)
                               ......++||||+++|+|.+++... ....+++..+..++.||+.||.|||+++   |+|+||||+|||++
T Consensus        81 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~  156 (284)
T 2a19_B           81 ETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKR-RGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLV  156 (284)
T ss_dssp             --------CCEEEEEEEEECCCCSCBHHHHHHHG-GGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEE
T ss_pred             ccccccccccCcceEEEEEeccCCCCHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEc
Confidence                     1124589999999999999999653 2356999999999999999999999999   99999999999999


Q ss_pred             CCCcEEEeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc
Q 011995          319 KDFSAKLSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       319 ~~~~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~  397 (473)
                      .++.+||+|||++...... ......+++.|+|||.+.+..++.++|||||||++|||++|..|+....     ..... 
T Consensus       157 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-----~~~~~-  230 (284)
T 2a19_B          157 DTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-----KFFTD-  230 (284)
T ss_dssp             ETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-----HHHHH-
T ss_pred             CCCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-----HHHHH-
Confidence            9999999999999876543 2344578899999999999999999999999999999999998874211     10000 


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                                  +.+..    ++...+..+.+++.+||+.||.+|||+.++++.|+.+.+....
T Consensus       231 ------------~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~  278 (284)
T 2a19_B          231 ------------LRDGI----ISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK  278 (284)
T ss_dssp             ------------HHTTC----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred             ------------hhccc----ccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence                        00011    1223456789999999999999999999999999998765543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.3e-42  Score=345.49  Aligned_cols=265  Identities=14%  Similarity=0.195  Sum_probs=198.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--  250 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+..... .....+.+.+|+.+|+.++||||+++++++...+.  
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~  100 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRT---GAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD  100 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTT---CCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCC---CCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccc
Confidence            46799999999999999999986443   3455555543322 33345678999999999999999999999876421  


Q ss_pred             --CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          251 --DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       251 --~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                        ..+|+||||+ +++|.+++..    ..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+||
T Consensus       101 ~~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Df  172 (367)
T 1cm8_A          101 DFTDFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDF  172 (367)
T ss_dssp             TCCCCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCC
T ss_pred             cCceEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEee
Confidence              3569999999 8899999854    35899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc---
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD---  404 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~---  404 (473)
                      |+++.... ......+|++|+|||++.+ ..++.++|||||||++|||++|+.||.+.+.......+..........   
T Consensus       173 g~a~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~  251 (367)
T 1cm8_A          173 GLARQADS-EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ  251 (367)
T ss_dssp             TTCEECCS-SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred             eccccccc-ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            99987643 3455678999999999987 679999999999999999999999998876655433322110000000   


Q ss_pred             -----c------ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 -----C------RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 -----~------~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           .      .+.......+ ..+....+..+.+|+.+||+.||.+|||+.++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          252 RLQSDEAKNYMKGLPELEKKDF-ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCG-GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhhhHHHHHHHHhCCCCCCCCH-HHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence                 0      0000000011 11223556889999999999999999999999883

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=3.3e-42  Score=335.09  Aligned_cols=249  Identities=17%  Similarity=0.273  Sum_probs=205.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|...++   .+.+++|+....  ......+.+.+|+.+++.++||||+++++++...  +
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~   88 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADT---KEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN--D   88 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS--S
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCC---CceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC--C
Confidence            46799999999999999999996543   344556655433  2334567789999999999999999999999865  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++++|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        89 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~  162 (294)
T 2rku_A           89 FVFVVLELCRRRSLLELHKR---RKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA  162 (294)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEecCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCc
Confidence            89999999999999998854   246899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......  ......+++.|+|||.+.+..++.++||||||+++|||++|+.||......+....+....           
T Consensus       163 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-----------  231 (294)
T 2rku_A          163 TKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNE-----------  231 (294)
T ss_dssp             EECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTC-----------
T ss_pred             eecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhcc-----------
Confidence            776422  2334568899999999998889999999999999999999999998766544332221110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             ..++...+..+.+++.+||+.||.+|||+.++++.
T Consensus       232 -------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          232 -------YSIPKHINPVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             -------CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             -------CCCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence                   01233455788999999999999999999999974

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.2e-42  Score=343.13  Aligned_cols=249  Identities=17%  Similarity=0.273  Sum_probs=205.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||++...++   .+.+++|+....  ......+.+.+|+.+++.++|+||+++++++.+.  +
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~  114 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADT---KEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN--D  114 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS--S
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCC---CCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC--C
Confidence            46899999999999999999996553   345556655433  2334567789999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+.+++|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       115 ~~~lv~e~~~~~~L~~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~  188 (335)
T 2owb_A          115 FVFVVLELCRRRSLLELHKR---RKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA  188 (335)
T ss_dssp             EEEEEECCCTTCBHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEecCCCCCHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCc
Confidence            89999999999999998854   246899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......  ......++..|+|||++.+..++.++|||||||++|||++|+.||......+....+....           
T Consensus       189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-----------  257 (335)
T 2owb_A          189 TKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNE-----------  257 (335)
T ss_dssp             EECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTC-----------
T ss_pred             eecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCC-----------
Confidence            876432  2334578899999999999889999999999999999999999998765544332221110           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                             ..++..++..+.+|+.+||+.||.+|||+.++++.
T Consensus       258 -------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          258 -------YSIPKHINPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             -------CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             -------CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                   01233445788999999999999999999999974

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=4.5e-42  Score=369.66  Aligned_cols=260  Identities=18%  Similarity=0.313  Sum_probs=210.9

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|...+.||+|+||.||+|.+.........+++++..........+.+.+|+.++++++||||+++++++.+   +.
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~---~~  464 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE---NP  464 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS---SS
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec---Cc
Confidence            346799999999999999999998655444455555555444444556789999999999999999999999843   56


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++|+|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++.
T Consensus       465 ~~lv~E~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~  539 (656)
T 2j0j_A          465 VWIIMELCTLGELRSFLQVR--KFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSR  539 (656)
T ss_dssp             CEEEEECCTTCBHHHHHHHT--TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred             eEEEEEcCCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCe
Confidence            89999999999999999643  346899999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          333 HIPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       333 ~~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .......   ....+++.|+|||++.+..++.++|||||||++|||++ |..||.+....+....+....          
T Consensus       540 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~----------  609 (656)
T 2j0j_A          540 YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE----------  609 (656)
T ss_dssp             SCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTC----------
T ss_pred             ecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC----------
Confidence            7644322   22345678999999999999999999999999999997 999998776554333222110          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                             ...++..++..+.+|+.+||..||.+|||+.+|++.|+.+..
T Consensus       610 -------~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          610 -------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence                   011234556889999999999999999999999999998864

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.6e-42  Score=364.74  Aligned_cols=255  Identities=20%  Similarity=0.270  Sum_probs=205.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....   +++.+++|+.....  .......+.+|+.+|..++|||||++++++.+.  +
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~---tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~--~  257 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRA---TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK--D  257 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS--S
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECC---CCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeC--C
Confidence            4679999999999999999999654   34556666654321  223346688999999999999999999998876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+||||||+++|+|.+++.... ...+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||++
T Consensus       258 ~l~lVmEy~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla  333 (576)
T 2acx_A          258 ALCLVLTLMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLA  333 (576)
T ss_dssp             EEEEEECCCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEEEcCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccc
Confidence            8999999999999999996542 345999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...........+...            +
T Consensus       334 ~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~------------i  401 (576)
T 2acx_A          334 VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERL------------V  401 (576)
T ss_dssp             EECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHH------------H
T ss_pred             eecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHH------------h
Confidence            8775443 34568999999999999888999999999999999999999999875422111111000            0


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                      .  .....++...+.++.+||.+||+.||.+||     ++.||++.
T Consensus       402 ~--~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          402 K--EVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             H--HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             h--cccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence            0  001123445678899999999999999999     78888753

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.6e-42  Score=343.48  Aligned_cols=267  Identities=18%  Similarity=0.255  Sum_probs=200.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|....+   ++.+++|+..... .....+.+.+|+.+++.++||||+++++++...  +.
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~   98 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDT---GRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK--KR   98 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTT---CCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCC---CceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC--CE
Confidence            46899999999999999999996543   3455566554433 233356688999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++.
T Consensus        99 ~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  172 (331)
T 4aaa_A           99 WYLVFEFVDHTILDDLELF---PNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFAR  172 (331)
T ss_dssp             EEEEEECCSEEHHHHHHHS---TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred             EEEEEecCCcchHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCce
Confidence            9999999999999888743   345999999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-ccc-------c
Q 011995          333 HIPET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-RPF-------L  401 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-~~~-------~  401 (473)
                      .....  ......+++.|+|||.+.+. .++.++|||||||++|||++|+.||...........+... ...       .
T Consensus       173 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (331)
T 4aaa_A          173 TLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELF  252 (331)
T ss_dssp             -----------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             eecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHh
Confidence            66432  23445788999999999775 6899999999999999999999999887655433222100 000       0


Q ss_pred             ccccccccccccccCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ADDCRLSLIMDPQLKGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...........+.+....     ...++..+.+|+.+||+.||.+|||+.|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          253 NKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             HHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             hhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            000000111111111111     12456889999999999999999999999863

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=334.34  Aligned_cols=251  Identities=20%  Similarity=0.337  Sum_probs=182.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|...+.||+|+||.||+|....+   ++.+++|+.....  .......+.+|+.++..++||||+++++++.+.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--   83 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHT---GLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDS--   83 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECS--
T ss_pred             ccccceeeeeecCCCceEEEEEEEccC---CceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccC--
Confidence            357899999999999999999986432   3445566554321  122346789999999999999999999999875  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..++||||+++++|.+++...  ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~  158 (278)
T 3cok_A           84 NYVYLVLEMCHNGEMNRYLKNR--VKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGL  158 (278)
T ss_dssp             SEEEEEEECCTTEEHHHHHHTC--SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTT
T ss_pred             CeEEEEEecCCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecc
Confidence            7899999999999999999643  356899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      +......  ......+++.|+|||.+.+..++.++|||||||++|||++|+.||...........+              
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~--------------  224 (278)
T 3cok_A          159 ATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKV--------------  224 (278)
T ss_dssp             CEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----C--------------
T ss_pred             eeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHH--------------
Confidence            9866432  223456789999999999888999999999999999999999999765432211100              


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ....  ...+...+.++.+++.+||+.||.+|||+.++++.
T Consensus       225 --~~~~--~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          225 --VLAD--YEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             --CSSC--CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             --hhcc--cCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence              0000  01233456789999999999999999999999873

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=346.27  Aligned_cols=269  Identities=17%  Similarity=0.214  Sum_probs=205.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-----eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCccc---------
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-----TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK---------  240 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~---------  240 (473)
                      ++|...+.||+|+||.||+|....+..     ..+.+++|+....      ..+.+|++++.+++||||++         
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            689999999999999999999764311     2455566665422      56889999999999999988         


Q ss_pred             ------ceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCc
Q 011995          241 ------LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTAN  314 (473)
Q Consensus       241 ------l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~N  314 (473)
                            +++++... ....++||||+ +++|.+++... ....+++..+..++.||+.||.|||+++   |+||||||+|
T Consensus       116 ~~~i~~~~~~~~~~-~~~~~lv~e~~-~~~L~~~l~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~N  189 (352)
T 2jii_A          116 LLAIPTCMGFGVHQ-DKYRFLVLPSL-GRSLQSALDVS-PKHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAEN  189 (352)
T ss_dssp             TCSCCCCCEEEEET-TTEEEEEEECC-CEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGG
T ss_pred             ccCccchhhccccC-CcEEEEEecCC-CcCHHHHHHhC-CcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHH
Confidence                  56666553 37889999999 99999999653 2356999999999999999999999999   9999999999


Q ss_pred             eeeCCCC--cEEEeccCCCcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          315 IQIDKDF--SAKLSGYGCAGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       315 ILl~~~~--~vkl~DFGla~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      ||++.++  .+||+|||++..+....         .....+|+.|+|||.+.+..++.++|||||||++|||++|+.||.
T Consensus       190 Il~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  269 (352)
T 2jii_A          190 IFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT  269 (352)
T ss_dssp             EEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred             EEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            9999998  89999999997664321         133478899999999999899999999999999999999999998


Q ss_pred             CCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCC
Q 011995          384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS  462 (473)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~  462 (473)
                      ........ .......+...   ...+.+...   ....++.++.+|+.+||..||.+|||+.+|++.|+++.......
T Consensus       270 ~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~  341 (352)
T 2jii_A          270 NCLPNTED-IMKQKQKFVDK---PGPFVGPCG---HWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVS  341 (352)
T ss_dssp             GGTTCHHH-HHHHHHHHHHS---CCCEECTTS---CEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             cCCcCHHH-HHHHHHhccCC---hhhhhhhcc---ccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCCC
Confidence            65321111 11100000000   000000000   01234578999999999999999999999999999998776543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=3.6e-42  Score=336.58  Aligned_cols=253  Identities=16%  Similarity=0.222  Sum_probs=203.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|...+.||+|+||.||+|....   .++.+++|+..... ......+.+|+.++..++||||+++++++.+.  +.
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   80 (304)
T 2jam_A            7 IRKTFIFMEVLGSGAFSEVFLVKQRL---TGKLFALKCIKKSP-AFRDSSLENEIAVLKKIKHENIVTLEDIYEST--TH   80 (304)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETT---TCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECS--SE
T ss_pred             hhccceeeeeccCCCCceEEEEEECC---CCCEEEEEEEeccc-ccchHHHHHHHHHHHhCCCCCeeehhhhcccC--CE
Confidence            34679999999999999999998653   33455666655332 22345688999999999999999999999765  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DFG  329 (473)
                      .++||||+++++|.+++...   ..+++..+..++.|++.||.|||+++   |+||||||+|||+   +.++.+||+|||
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg  154 (304)
T 2jam_A           81 YYLVMQLVSGGELFDRILER---GVYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFG  154 (304)
T ss_dssp             EEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCS
T ss_pred             EEEEEEcCCCccHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCC
Confidence            99999999999999998543   35899999999999999999999999   9999999999999   788999999999


Q ss_pred             CCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          330 CAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       330 la~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ++............+++.|+|||.+.+..++.++|||||||++|||++|..||...........+.....          
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~----------  224 (304)
T 2jam_A          155 LSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYY----------  224 (304)
T ss_dssp             TTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCC----------
T ss_pred             cceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCC----------
Confidence            9987655444455789999999999988899999999999999999999999987665443322221100          


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          .....+...++..+.+|+.+||..||.+|||+.++++.
T Consensus       225 ----~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          225 ----EFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             ----CCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             ----CCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                01111233456889999999999999999999999873

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=344.79  Aligned_cols=272  Identities=18%  Similarity=0.283  Sum_probs=195.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHH--HHhCCCCCcccceeeeec---C
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNT--LASLQHPNLCKLLGFHAR---D  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~--l~~l~HpnIv~l~g~~~~---~  248 (473)
                      .++|+..+.||+|+||.||+|+..+     +.+++|+...    .....+..|.++  +..++|+||+++++++..   .
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~-----~~vavK~~~~----~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~   82 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSLDE-----RPVAVKVFSF----ANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTAD   82 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETT-----EEEEEEEEEG----GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTT
T ss_pred             hHHhheeeecccCCCeEEEEEEECC-----eEEEEEEeec----cchhhHHHHHHHHHHHhccCcchhhheecccccccC
Confidence            4689999999999999999998643     4455665542    223444555555  445899999999975532   2


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc---------CCCceeecCCCCCceeeCC
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE---------GPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~---------~~~~ivHrDlkp~NILl~~  319 (473)
                      +...+++||||+++|+|.+++...    .+++..+..++.||+.||.|||+.         +   |+||||||+|||++.
T Consensus        83 ~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~  155 (336)
T 3g2f_A           83 GRMEYLLVMEYYPNGSLXKYLSLH----TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKN  155 (336)
T ss_dssp             SCEEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECT
T ss_pred             CCceEEEEEecCCCCcHHHHHhhc----ccchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcC
Confidence            334678999999999999999543    358999999999999999999999         8   999999999999999


Q ss_pred             CCcEEEeccCCCcccCCCC----------ccCcccccccCChhhhhc-------CCCCCcCCchHHHHHHHHHHcCCCCC
Q 011995          320 DFSAKLSGYGCAGHIPETD----------ISNSSVAAANLSVETLER-------GLLTPKSNVWSFGIVLLELLTGRKNL  382 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~----------~~~~~~t~~y~aPE~~~~-------~~~s~~sDvwSlGvvl~elltG~~p~  382 (473)
                      ++.+||+|||++..+....          .....+|+.|+|||++.+       ..++.++|||||||++|||++|..||
T Consensus       156 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~  235 (336)
T 3g2f_A          156 DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDL  235 (336)
T ss_dssp             TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGG
T ss_pred             CCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcC
Confidence            9999999999997664321          123468999999999976       34667899999999999999997766


Q ss_pred             CCCChHHHHh-Hh---hhccccccccc--ccccccccccCCCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 011995          383 DSRHPKEERN-LV---KWSRPFLADDC--RLSLIMDPQLKGRF--PLKAARTVADIALRCLQKEPSERPTMRSIFEELDR  454 (473)
Q Consensus       383 ~~~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~  454 (473)
                      .......... ..   ....+...+..  .......+.+...+  ...++.++.+||.+||+.||++|||+.|+++.|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~  315 (336)
T 3g2f_A          236 FPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAE  315 (336)
T ss_dssp             STTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred             CCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHH
Confidence            4332211000 00   00000000000  00000111111111  23577789999999999999999999999999999


Q ss_pred             hhcccCC
Q 011995          455 QESRKSS  461 (473)
Q Consensus       455 l~~~~~~  461 (473)
                      +...-..
T Consensus       316 ll~~~~~  322 (336)
T 3g2f_A          316 LMMIWER  322 (336)
T ss_dssp             HHHCCCC
T ss_pred             HHHHHHh
Confidence            8755443

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.4e-42  Score=334.77  Aligned_cols=264  Identities=18%  Similarity=0.223  Sum_probs=207.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|....+   .+.+++|+..... .....+.+.+|+.++++++||||+++++++.......
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSD---GKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTT   81 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTT---CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCC---CcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCce
Confidence            46899999999999999999986543   3455566655443 3345677899999999999999999999886544478


Q ss_pred             eEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCC--CceeecCCCCCceeeCCCCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGP--FQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~--~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      .++||||+++|+|.+++.... ....+++..+..++.|++.||+|||+.+.  .+|+||||||+|||++.++.+||+|||
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg  161 (279)
T 2w5a_A           82 LYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG  161 (279)
T ss_dssp             EEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred             EEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence            999999999999999996432 23458999999999999999999999861  239999999999999999999999999


Q ss_pred             CCcccCCCCc--cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHIPETDI--SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~~~~--~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ++........  ....++..|+|||.+.+..++.++|||||||++|||++|..||...........+....         
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~---------  232 (279)
T 2w5a_A          162 LARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGK---------  232 (279)
T ss_dssp             HHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC---------
T ss_pred             hheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcc---------
Confidence            9876643321  23467899999999999899999999999999999999999998765443322221100         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                              ...++..++.++.+++.+||+.||.+|||+.+|++.+...+.
T Consensus       233 --------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~  274 (279)
T 2w5a_A          233 --------FRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEH  274 (279)
T ss_dssp             --------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGG
T ss_pred             --------cccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhh
Confidence                    011233456889999999999999999999999987765443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-41  Score=339.72  Aligned_cols=270  Identities=17%  Similarity=0.218  Sum_probs=197.5

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC----ChhhHhHHHHHHHHHhCCCCCcccceeeee
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQGVKEFINDVNTLASLQHPNLCKLLGFHA  246 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~  246 (473)
                      ....++|...+.||+|+||.||+|....   +++.+++|+......    ......+.+|+.+++.++||||+++++++.
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   82 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKN---TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG   82 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSS---CCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECC---CCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe
Confidence            3446789999999999999999998543   344555665543221    122356889999999999999999999987


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                      ..  ...++||||+++ +|.+++..  ....+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+
T Consensus        83 ~~--~~~~lv~e~~~~-~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~  154 (346)
T 1ua2_A           83 HK--SNISLVFDFMET-DLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLA  154 (346)
T ss_dssp             CT--TCCEEEEECCSE-EHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEEC
T ss_pred             eC--CceEEEEEcCCC-CHHHHHHh--cCcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEE
Confidence            65  789999999975 89888854  3456889999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCC--CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc--cccc
Q 011995          327 GYGCAGHIPET--DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS--RPFL  401 (473)
Q Consensus       327 DFGla~~~~~~--~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~--~~~~  401 (473)
                      |||++......  ......+|+.|+|||++.+. .++.++|||||||++|||++|.+||.+.........+...  .+..
T Consensus       155 Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~  234 (346)
T 1ua2_A          155 DFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTE  234 (346)
T ss_dssp             CCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCT
T ss_pred             ecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCCh
Confidence            99999876433  23455789999999999764 4889999999999999999999999887655443322111  0000


Q ss_pred             ---ccccccccccccccCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ---ADDCRLSLIMDPQLKGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ---~~~~~~~~~~~~~l~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .+.+..............     ...++.++.+||.+||+.||.+|||+.|+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          235 EQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             TTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence               000000000000000001     13456789999999999999999999999975

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=4.4e-42  Score=333.56  Aligned_cols=252  Identities=18%  Similarity=0.211  Sum_probs=199.0

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecC--CCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD--GSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~--~~~~  252 (473)
                      .|...+.||+|+||.||+|....+.   ..+++++.... ........+.+|+.+++.++||||+++++++...  +...
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~---~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETT---VEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTC---CEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCc---eEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCce
Confidence            3677789999999999999865543   34445554433 2344567789999999999999999999988652  2356


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla  331 (473)
                      +++||||+++|+|.+++...   ..+++..+..++.||+.||.|||+.+. +|+||||||+|||++ .++.+||+|||++
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~~-~i~H~dikp~Nil~~~~~~~~kl~Dfg~~  179 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLA  179 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSSS-CCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEEEEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHcCCC-CEEECCCCHHHEEEECCCCCEEEeeCCCc
Confidence            89999999999999999542   468999999999999999999999863 399999999999998 7899999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      ............+++.|+|||.+. +.++.++|||||||++|+|++|+.||...............      .       
T Consensus       180 ~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~------~-------  245 (290)
T 1t4h_A          180 TLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS------G-------  245 (290)
T ss_dssp             GGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTT------T-------
T ss_pred             ccccccccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhc------c-------
Confidence            876655555667899999999886 45899999999999999999999999875443322111000      0       


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                        .....++...+.++.+|+.+||+.||.+|||+.++++
T Consensus       246 --~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          246 --VKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             --CCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             --CCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence              0000112233467999999999999999999999986

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=4.4e-42  Score=351.47  Aligned_cols=254  Identities=15%  Similarity=0.245  Sum_probs=191.1

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-------CChhhHhHHHHHHHHHhCCCCCcccceee
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-------SSQGVKEFINDVNTLASLQHPNLCKLLGF  244 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~  244 (473)
                      ...++|...+.||+|+||.||+|....+   .+.+++|+.....       .......+.+|+.+|++++||||++++++
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~  208 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKT---CKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNF  208 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTT---CCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEE
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCC---CcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            4568899999999999999999986543   4556666654321       12223468899999999999999999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---C
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---F  321 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~  321 (473)
                      +..   +..++||||+++|+|.+++..   ...+++..+..++.|++.||+|||+++   |+||||||+|||++.+   +
T Consensus       209 ~~~---~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~  279 (419)
T 3i6u_A          209 FDA---EDYYIVLELMEGGELFDKVVG---NKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDC  279 (419)
T ss_dssp             EES---SEEEEEEECCTTCBGGGGTSS---SCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSC
T ss_pred             Eec---CceEEEEEcCCCCcHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcc
Confidence            854   468999999999999998843   356999999999999999999999999   9999999999999754   4


Q ss_pred             cEEEeccCCCcccCCCC-ccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhh
Q 011995          322 SAKLSGYGCAGHIPETD-ISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKW  396 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~  396 (473)
                      .+||+|||+++...... .....+|+.|+|||++.+   ..++.++|||||||++|||++|..||........ ...+..
T Consensus       280 ~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~  359 (419)
T 3i6u_A          280 LIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS  359 (419)
T ss_dssp             CEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHT
T ss_pred             eEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhc
Confidence            59999999998775443 345578999999999853   5678899999999999999999999976433211 111110


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...              .........++..+.+|+.+||+.||.+|||+.|+++.
T Consensus       360 ~~~--------------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          360 GKY--------------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             TCC--------------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCC--------------CCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            000              00000012346789999999999999999999999873

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=7.7e-42  Score=357.03  Aligned_cols=252  Identities=18%  Similarity=0.242  Sum_probs=199.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .+.|+..+.||+|+||+||+|.....   ...+++|+..... .......+.+|+.+++.++|||||++++++.+.  ..
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--~~  110 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVT---HVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDK--RN  110 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTT---CCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECS--SE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCC---CcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC--CE
Confidence            45799999999999999999996543   3455566655432 233457789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl~DFG  329 (473)
                      .|+||||+.+|+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++.   ++.+||+|||
T Consensus       111 ~~lv~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG  184 (494)
T 3lij_A          111 YYLVMECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFG  184 (494)
T ss_dssp             EEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCT
T ss_pred             EEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECC
Confidence            99999999999999988543   45899999999999999999999999   999999999999976   4559999999


Q ss_pred             CCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          330 CAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       330 la~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++...... ......+|+.|+|||++. ..++.++|||||||++|+|++|.+||.+....+....+........      
T Consensus       185 ~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~------  257 (494)
T 3lij_A          185 LSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFD------  257 (494)
T ss_dssp             TCEECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCC------
T ss_pred             CCeECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCC------
Confidence            99876543 334567899999999986 4699999999999999999999999988766554433322111000      


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              ......++..+.+||.+||+.||.+|||+.++++.
T Consensus       258 --------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          258 --------SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             --------SGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             --------chhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence                    00012456789999999999999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=4.3e-42  Score=358.04  Aligned_cols=252  Identities=19%  Similarity=0.264  Sum_probs=206.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|....   ..+.+++|+.....  .......+.+|+.++++++|||||++++++.+.  .
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--~   99 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKI---TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDK--G   99 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECS--S
T ss_pred             cCceEEeeEEecCCCEEEEEEEECC---CCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC--C
Confidence            4679999999999999999998543   34566677665442  234567899999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEecc
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGY  328 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DF  328 (473)
                      ..++||||+.+|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||+   +.++.+||+||
T Consensus       100 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Df  173 (484)
T 3nyv_A          100 YFYLVGEVYTGGELFDEIIS---RKRFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDF  173 (484)
T ss_dssp             EEEEEECCCCSCBHHHHHHT---CSCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCT
T ss_pred             EEEEEEecCCCCCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEee
Confidence            89999999999999999854   346999999999999999999999999   9999999999999   56789999999


Q ss_pred             CCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          329 GCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       329 Gla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      |++....... .....+|+.|+|||++.+ .++.++|||||||++|+|++|.+||.+....+....+.......      
T Consensus       174 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~------  246 (484)
T 3nyv_A          174 GLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTF------  246 (484)
T ss_dssp             THHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCC------
T ss_pred             eeeEEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCC------
Confidence            9998765432 344578999999999876 69999999999999999999999998876655443332211000      


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              .......++.++.+||.+||+.||.+|||+.++++.
T Consensus       247 --------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          247 --------ELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             --------CSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             --------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence                    000123456889999999999999999999999874

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=7.7e-42  Score=357.92  Aligned_cols=253  Identities=17%  Similarity=0.242  Sum_probs=202.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC------------ChhhHhHHHHHHHHHhCCCCCccc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS------------SQGVKEFINDVNTLASLQHPNLCK  240 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Ei~~l~~l~HpnIv~  240 (473)
                      ..++|...+.||+|+||+||+|....+   ...+++|+......            ....+.+.+|+.+|+.++|||||+
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~---~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~  110 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNG---HSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIK  110 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTT---CCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCC
T ss_pred             cccceEEEeEecccCCeEEEEEEECCC---CcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCe
Confidence            457899999999999999999996543   34455555543221            133567899999999999999999


Q ss_pred             ceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       241 l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      +++++.+.  ..+++||||+++|+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++.+
T Consensus       111 ~~~~~~~~--~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~  182 (504)
T 3q5i_A          111 LFDVFEDK--KYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENK  182 (504)
T ss_dssp             EEEEEECS--SEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESST
T ss_pred             EEEEEEcC--CEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecC
Confidence            99999876  7899999999999999988543   45999999999999999999999999   9999999999999877


Q ss_pred             C---cEEEeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          321 F---SAKLSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       321 ~---~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      +   .+||+|||++...... ......+|+.|+|||++. +.++.++|||||||++|+|++|..||.+....+....+..
T Consensus       183 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~  261 (504)
T 3q5i_A          183 NSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEK  261 (504)
T ss_dssp             TCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHc
Confidence            5   6999999999876543 334567899999999986 4689999999999999999999999998776554443332


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ........              ....++.++.+|+.+||+.||.+|||+.|+++.
T Consensus       262 ~~~~~~~~--------------~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          262 GKYYFDFN--------------DWKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             CCCCCCHH--------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCCCcc--------------ccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            21100000              012345789999999999999999999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=9.4e-43  Score=344.49  Aligned_cols=248  Identities=17%  Similarity=0.247  Sum_probs=175.8

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEEEEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      .+.||+|+||.||+|....+   .+.+++|+...    .....+.+|+.++..+. ||||+++++++.+.  ...|+|||
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~~----~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~--~~~~lv~e   86 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKS---NQAFAVKIISK----RMEANTQKEITALKLCEGHPNIVKLHEVFHDQ--LHTFLVME   86 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTT---CCEEEEEEEEG----GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--SEEEEEEC
T ss_pred             CCccccCCCeEEEEEEECCC---CCEEEEEEECh----hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcC--CEEEEEEE
Confidence            47899999999999996543   34555665532    34567889999999997 99999999999866  78999999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC---cEEEeccCCCcccC
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF---SAKLSGYGCAGHIP  335 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~---~vkl~DFGla~~~~  335 (473)
                      |+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++   .+||+|||++....
T Consensus        87 ~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~  160 (325)
T 3kn6_A           87 LLNGGELFERIKKK---KHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKP  160 (325)
T ss_dssp             CCCSCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECC
T ss_pred             ccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecC
Confidence            99999999999653   46999999999999999999999999   99999999999997665   89999999998664


Q ss_pred             CC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          336 ET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       336 ~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ..  ......+|+.|+|||++.+..++.++|||||||++|||++|..||..............         ....+...
T Consensus       161 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~---------~~~~i~~~  231 (325)
T 3kn6_A          161 PDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVE---------IMKKIKKG  231 (325)
T ss_dssp             C----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHH---------HHHHHTTT
T ss_pred             CCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHH---------HHHHHHcC
Confidence            33  23445779999999999999999999999999999999999999976543210000000         00000000


Q ss_pred             c--cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          414 Q--LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       414 ~--l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .  ........++.++.+|+.+||+.||.+|||+.++++.
T Consensus       232 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  271 (325)
T 3kn6_A          232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN  271 (325)
T ss_dssp             CCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred             CCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence            0  0001112456889999999999999999999999854

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=7.6e-42  Score=343.26  Aligned_cols=257  Identities=14%  Similarity=0.146  Sum_probs=203.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC---CCCcccceeeeec
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ---HPNLCKLLGFHAR  247 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~~~  247 (473)
                      ..++|...+.||+|+||+||+|.+.+  +....+.+++|+...    ....++.+|++++..++   |+||+.+++++..
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~----~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKP----ANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESS----CCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCC----CChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            45789999999999999999996433  233456666666542    23567888888888887   9999999999987


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC------
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGR--SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK------  319 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~------  319 (473)
                      .  +..||||||+++|+|.+++...  .....+++..+..|+.||+.||+|||+++   ||||||||+||||+.      
T Consensus       139 ~--~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~  213 (365)
T 3e7e_A          139 Q--NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQD  213 (365)
T ss_dssp             S--SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC-
T ss_pred             C--CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCcc
Confidence            6  7889999999999999999642  13456999999999999999999999999   999999999999998      


Q ss_pred             -----CCcEEEeccCCCcccC----CCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH
Q 011995          320 -----DFSAKLSGYGCAGHIP----ETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE  390 (473)
Q Consensus       320 -----~~~vkl~DFGla~~~~----~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~  390 (473)
                           ++.+||+|||+++.+.    ........+|+.|+|||++.+..++.++|||||||++|||++|+.||....... 
T Consensus       214 ~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-  292 (365)
T 3e7e_A          214 DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE-  292 (365)
T ss_dssp             -----CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE-
T ss_pred             ccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc-
Confidence                 8999999999996543    223345678999999999999999999999999999999999999985432110 


Q ss_pred             HhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCC-CCHHHHHHHHHhhhcccC
Q 011995          391 RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSER-PTMRSIFEELDRQESRKS  460 (473)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~R-Pt~~eil~~L~~l~~~~~  460 (473)
                           |         .+    ...+. .+  .....+.+++..||..+|.+| |++.++.+.|+++.....
T Consensus       293 -----~---------~~----~~~~~-~~--~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~  342 (365)
T 3e7e_A          293 -----C---------KP----EGLFR-RL--PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHY  342 (365)
T ss_dssp             -----E---------EE----CSCCT-TC--SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             -----e---------ee----chhcc-cc--CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence                 0         00    00011 11  125678899999999999999 679999999998776543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.1e-41  Score=337.01  Aligned_cols=261  Identities=15%  Similarity=0.212  Sum_probs=205.6

Q ss_pred             HHHHHHhcccccC-cceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhC-CCCCcccceee
Q 011995          168 DEVAAACHNFFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASL-QHPNLCKLLGF  244 (473)
Q Consensus       168 ~el~~~~~~f~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~  244 (473)
                      +......+.|... +.||+|+||.||+|....+   .+.+++|+.... ........+.+|+.++..+ +||||++++++
T Consensus        21 ~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~   97 (327)
T 3lm5_A           21 QSMENFNNFYILTSKELGRGKFAVVRQCISKST---GQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV   97 (327)
T ss_dssp             BCHHHHHHHEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred             HHHHhhhhEEeeccceeCCCCCeEEEEEEECCC---CCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            3444556678776 8999999999999986543   345556655433 2334467889999999999 56999999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CC
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DF  321 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~  321 (473)
                      +...  ...++||||+.+|+|.+++... ....+++..+..++.|++.||+|||+++   |+||||||+|||++.   ++
T Consensus        98 ~~~~--~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A           98 YENT--SEIILILEYAAGGEIFSLCLPE-LAEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             EECS--SEEEEEEECCTTEEGGGGGSSC-C-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBC
T ss_pred             EEeC--CeEEEEEEecCCCcHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCC
Confidence            9766  7899999999999999998543 3457999999999999999999999999   999999999999987   78


Q ss_pred             cEEEeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          322 SAKLSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      .+||+|||++...... ......+|+.|+|||++.+..++.++|||||||++|||++|..||...........+..... 
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~-  250 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNV-  250 (327)
T ss_dssp             CEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC-
T ss_pred             cEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhccc-
Confidence            9999999999876543 23445789999999999999999999999999999999999999988765544332221110 


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                   .........++..+.+|+.+||+.||.+|||+.++++.
T Consensus       251 -------------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          251 -------------DYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             -------------CCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             -------------ccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence                         01111123456789999999999999999999999874

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=6.6e-42  Score=356.84  Aligned_cols=253  Identities=18%  Similarity=0.248  Sum_probs=203.6

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      ..++|.+.+.||+|+||+||+|....   +.+.+++|+..... .......+.+|+++|++++|||||++++++.+.  .
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~--~   94 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRI---TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS--S   94 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETT---TCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECS--S
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECC---CCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcC--C
Confidence            35689999999999999999998643   34556666654321 233457789999999999999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC---CCCcEEEecc
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKLSGY  328 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~---~~~~vkl~DF  328 (473)
                      ..++||||+.+|+|.+.+...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++   .++.+||+||
T Consensus        95 ~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Df  168 (486)
T 3mwu_A           95 SFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDF  168 (486)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSC
T ss_pred             EEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEEC
Confidence            899999999999999988543   46999999999999999999999999   99999999999995   4567999999


Q ss_pred             CCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          329 GCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       329 Gla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      |++...... ......+|+.|+|||++.+ .++.++|||||||++|+|++|.+||.+....+....+.......      
T Consensus       169 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~------  241 (486)
T 3mwu_A          169 GLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAF------  241 (486)
T ss_dssp             SCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCS------
T ss_pred             CcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC------
Confidence            999876443 3345578999999999875 58999999999999999999999998876655443332111000      


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              .......++.++.+||.+||+.||.+|||+.++++.
T Consensus       242 --------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          242 --------DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             --------CSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             --------CCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                    000123456789999999999999999999999985

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.3e-42  Score=339.86  Aligned_cols=258  Identities=17%  Similarity=0.261  Sum_probs=198.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|...+.      +++++.... ......+.+.+|+.++++++|+||+++++++...  ..
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~~------~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~  103 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHGE------VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSP--PH  103 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESSS------EEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS--SC
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcCe------EEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC--Cc
Confidence            56899999999999999999987542      334444433 2334456788999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..  ....+++..+..++.||+.||+|||+++   |+||||||+|||++ ++.+||+|||++.
T Consensus       104 ~~iv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~  177 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRD--AKIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFS  177 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTS--SCCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC
T ss_pred             eEEEeecccCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCcc
Confidence            9999999999999999954  2346899999999999999999999999   99999999999998 6799999999987


Q ss_pred             ccCC-------CCccCcccccccCChhhhhc---------CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          333 HIPE-------TDISNSSVAAANLSVETLER---------GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       333 ~~~~-------~~~~~~~~t~~y~aPE~~~~---------~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      ....       .......+++.|+|||.+.+         ..++.++|||||||++|||++|+.||...........+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~  257 (319)
T 2y4i_B          178 ISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGT  257 (319)
T ss_dssp             ----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHT
T ss_pred             ccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcc
Confidence            5421       12233457899999999964         3478899999999999999999999987665443322211


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      .             ..+..   ....++.++.+++.+||..||.+|||+.+|++.|+++..+...
T Consensus       258 ~-------------~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~  306 (319)
T 2y4i_B          258 G-------------MKPNL---SQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRR  306 (319)
T ss_dssp             T-------------CCCCC---CCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC------
T ss_pred             C-------------CCCCC---CcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhcc
Confidence            0             00000   0112446789999999999999999999999999998876544

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1e-41  Score=334.94  Aligned_cols=259  Identities=18%  Similarity=0.315  Sum_probs=192.9

Q ss_pred             ccccc-CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          175 HNFFS-DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      +.|.+ .+.||+|+||.||+|..   ....+.+++|+.... .......+.+|++++.++ +||||+++++++.+.  +.
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~---~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~--~~   85 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCIN---LITSQEYAVKIIEKQ-PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEE--DR   85 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEEC---SSSCCEEEEEEEECC-SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--TE
T ss_pred             eeEEecCceecCCceEEEEEEEE---cCCCcEEEEEEEeeC-cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC--CE
Confidence            56776 47899999999999984   334556667766543 234467789999999985 799999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc---EEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS---AKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~---vkl~DFG  329 (473)
                      .++||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.   +||+|||
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg  159 (316)
T 2ac3_A           86 FYLVFEKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFD  159 (316)
T ss_dssp             EEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTT
T ss_pred             EEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEcc
Confidence            99999999999999999643   36899999999999999999999999   999999999999988765   9999999


Q ss_pred             CCcccCCC---------CccCcccccccCChhhhhc-----CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh
Q 011995          330 CAGHIPET---------DISNSSVAAANLSVETLER-----GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK  395 (473)
Q Consensus       330 la~~~~~~---------~~~~~~~t~~y~aPE~~~~-----~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~  395 (473)
                      ++......         ......+|+.|+|||++.+     ..++.++|||||||++|||++|+.||.........    
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~----  235 (316)
T 2ac3_A          160 LGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCG----  235 (316)
T ss_dssp             CCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSC----
T ss_pred             CccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccc----
Confidence            98765321         1223458899999999975     45889999999999999999999999765422100    


Q ss_pred             hcccccc---cccccccccccccCCCCC----HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          396 WSRPFLA---DDCRLSLIMDPQLKGRFP----LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       396 ~~~~~~~---~~~~~~~~~~~~l~~~~~----~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      |......   .......+.....  .++    ..++.++.+|+.+||+.||.+|||+.|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          236 WDRGEACPACQNMLFESIQEGKY--EFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             C----CCHHHHHHHHHHHHHCCC--CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccccccchhHHHHHHHHHhccCc--ccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            0000000   0000000000000  112    1345789999999999999999999999873

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.6e-41  Score=341.15  Aligned_cols=259  Identities=17%  Similarity=0.285  Sum_probs=206.5

Q ss_pred             HHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-------hhhHhHHHHHHHHHhC-CCCCc
Q 011995          167 LDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-------QGVKEFINDVNTLASL-QHPNL  238 (473)
Q Consensus       167 ~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ei~~l~~l-~HpnI  238 (473)
                      ........++|...+.||+|+||.||+|....+   ++.+++|+.+.....       ...+.+.+|+.++.++ +||||
T Consensus        86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~---g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i  162 (365)
T 2y7j_A           86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRAT---GHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHI  162 (365)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTB
T ss_pred             chhhhhhhhhcccceEEecCCCEEEEEEEECCC---CcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            344556678899999999999999999997533   345667766654321       1245678999999999 89999


Q ss_pred             ccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC
Q 011995          239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID  318 (473)
Q Consensus       239 v~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~  318 (473)
                      +++++++...  ...++||||+++++|.+++..   ...+++..+..++.||+.||.|||+.+   |+|+||||+|||++
T Consensus       163 v~~~~~~~~~--~~~~lv~e~~~g~~L~~~l~~---~~~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~  234 (365)
T 2y7j_A          163 ITLIDSYESS--SFMFLVFDLMRKGELFDYLTE---KVALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLD  234 (365)
T ss_dssp             CCEEEEEEBS--SEEEEEECCCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC
T ss_pred             eEEEEEEeeC--CEEEEEEEeCCCCcHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEC
Confidence            9999998765  789999999999999999954   246999999999999999999999999   99999999999999


Q ss_pred             CCCcEEEeccCCCcccCCC-CccCcccccccCChhhhhcC------CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH
Q 011995          319 KDFSAKLSGYGCAGHIPET-DISNSSVAAANLSVETLERG------LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER  391 (473)
Q Consensus       319 ~~~~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~------~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~  391 (473)
                      .++.+||+|||++..+... ......+|+.|+|||++.+.      .++.++|||||||++|||++|..||.........
T Consensus       235 ~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~  314 (365)
T 2y7j_A          235 DNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILML  314 (365)
T ss_dssp             TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             CCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            9999999999999876543 33456789999999998643      5789999999999999999999999876554433


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..+.......         ..+.     ....+..+.+|+.+||+.||.+|||+.++++
T Consensus       315 ~~i~~~~~~~---------~~~~-----~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          315 RMIMEGQYQF---------SSPE-----WDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             HHHHHTCCCC---------CHHH-----HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHhCCCCC---------CCcc-----cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            2221110000         0000     0123467899999999999999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=329.46  Aligned_cols=252  Identities=14%  Similarity=0.254  Sum_probs=196.7

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +|.....||+|+||.||+|....+   ...+++|+.... .....+.+.+|+.+++.++||||+++++++...  +..++
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~l   96 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSN---QVRIAIKEIPER-DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSEN--GFIKI   96 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTT---CCEEEEEEEECC-CC---HHHHHHHHHHHTCCCTTBCCEEEEEEET--TEEEE
T ss_pred             CCCCcEEEeecCcEEEEEEEECCC---CeEEEEEEccCC-chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeC--CcEEE
Confidence            344456999999999999986543   344455554433 334457789999999999999999999999876  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEEeccCCCccc
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKLSGYGCAGHI  334 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl~DFGla~~~  334 (473)
                      ||||+++++|.+++........+++..+..++.|++.||.|||+++   |+|+||||+|||++. ++.+||+|||++...
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~  173 (295)
T 2clq_A           97 FMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRL  173 (295)
T ss_dssp             EEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEES
T ss_pred             EEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeeccccccc
Confidence            9999999999999976544456789999999999999999999999   999999999999987 899999999999776


Q ss_pred             CCCC--ccCcccccccCChhhhhcCC--CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETD--ISNSSVAAANLSVETLERGL--LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~--~~~~~~t~~y~aPE~~~~~~--~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....  .....+++.|+|||++.+..  ++.++|||||||++|||++|+.||..............   .        . 
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~---~--------~-  241 (295)
T 2clq_A          174 AGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVG---M--------F-  241 (295)
T ss_dssp             CC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHH---H--------H-
T ss_pred             CCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhc---c--------c-
Confidence            4322  23457889999999997654  78999999999999999999999975433221110000   0        0 


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .....++...+.++.+|+.+||+.||.+|||+.++++.
T Consensus       242 ---~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          242 ---KVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             ---CCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             ---cccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence               01112244556889999999999999999999999863

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.1e-41  Score=353.57  Aligned_cols=264  Identities=14%  Similarity=0.135  Sum_probs=203.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|.+.+.||+|+||.||+|....+   .+.+++|+.....   ...++.+|++++..++|.+++..+.++... .+..
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~---~~~vAvK~~~~~~---~~~~~~~E~~il~~L~~~~~i~~i~~~~~~-~~~~   78 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQT---NEEVAIKLENVKT---KHPQLLYESKIYRILQGGTGIPNVRWFGVE-GDYN   78 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTT---CCEEEEEEEETTC---SSCCHHHHHHHHHHTTTSTTCCCEEEEEEE-TTEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCC---CcEEEEEEecccc---ccHHHHHHHHHHHHhcCCCCCCeEEEEEee-CCEE
Confidence            46899999999999999999986433   3456666655432   235688999999999876555554444333 2788


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee---CCCCcEEEeccCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI---DKDFSAKLSGYGC  330 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl---~~~~~vkl~DFGl  330 (473)
                      +|||||+ +++|.+++...  ...+++..++.|+.||+.||.|||+++   ||||||||+||||   +.++.+||+|||+
T Consensus        79 ~lvme~~-g~sL~~ll~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGl  152 (483)
T 3sv0_A           79 VLVMDLL-GPSLEDLFNFC--SRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGL  152 (483)
T ss_dssp             EEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTT
T ss_pred             EEEEECC-CCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCc
Confidence            9999999 99999999642  346999999999999999999999999   9999999999999   5889999999999


Q ss_pred             CcccCCCCc---------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc
Q 011995          331 AGHIPETDI---------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL  401 (473)
Q Consensus       331 a~~~~~~~~---------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~  401 (473)
                      ++.+.....         ....+|+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+...... 
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~-  231 (483)
T 3sv0_A          153 AKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEK-  231 (483)
T ss_dssp             CEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHH-
T ss_pred             ceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhc-
Confidence            987643321         2557899999999999999999999999999999999999999875442222221111000 


Q ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       402 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                          ....... .    +...++.++.+|+..||+.||.+||++.+|++.|+++..+..
T Consensus       232 ----~~~~~~~-~----l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~  281 (483)
T 3sv0_A          232 ----KVATSIE-A----LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREG  281 (483)
T ss_dssp             ----HHHSCHH-H----HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             ----cccccHH-H----HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcC
Confidence                0000000 0    012335789999999999999999999999999999865543

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.1e-41  Score=357.40  Aligned_cols=254  Identities=17%  Similarity=0.256  Sum_probs=203.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|...+.||+|+||.||+|+...   +++.+++|+.....  .......+.+|+.+|..++||||+++++++.+.  .
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~---tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~--~  258 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKA---TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETK--T  258 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS--S
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECC---CCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeC--C
Confidence            3678888999999999999999654   34556666654321  223356788999999999999999999998776  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      .+|+||||+++|+|.+++.... ....+++..+..++.||+.||.|||+++   |+||||||+||||+.+|.+||+|||+
T Consensus       259 ~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGl  335 (543)
T 3c4z_A          259 DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGL  335 (543)
T ss_dssp             EEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecce
Confidence            8999999999999999986542 2456999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhhccccccccccc
Q 011995          331 AGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADDCRL  407 (473)
Q Consensus       331 a~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~  407 (473)
                      +..+....  .....||+.|+|||++.+..++.++|||||||++|||++|+.||........ ..+...           
T Consensus       336 a~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~-----------  404 (543)
T 3c4z_A          336 AVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQR-----------  404 (543)
T ss_dssp             CEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHH-----------
T ss_pred             eeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHH-----------
Confidence            98765433  2345899999999999999999999999999999999999999976532111 111100           


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM-----RSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~  450 (473)
                        +...  ...++..++..+.+||.+||+.||.+||++     .+|++
T Consensus       405 --i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          405 --VLEQ--AVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             --HHHC--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             --Hhhc--ccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence              0000  012344567889999999999999999975     66654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.7e-41  Score=338.66  Aligned_cols=269  Identities=14%  Similarity=0.187  Sum_probs=201.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|+..+.||+|+||.||+|....+   ++.+++|+..... .......+.+|+.+++.++||||+++++++....   
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   92 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKT---GQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPY   92 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTT---CCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC----
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCC---CCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccc
Confidence            46899999999999999999996543   3455565544332 2334567889999999999999999999987642   


Q ss_pred             ---CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 ---SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                         .+..++||||+.+ +|.+.+...  ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+
T Consensus        93 ~~~~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~  166 (351)
T 3mi9_A           93 NRCKGSIYLVFDFCEH-DLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLA  166 (351)
T ss_dssp             ----CEEEEEEECCSE-EHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEEC
T ss_pred             ccCCceEEEEEeccCC-CHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEc
Confidence               2568999999975 777777543  346999999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCC------CCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          327 GYGCAGHIPE------TDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       327 DFGla~~~~~------~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |||++..+..      .......+|+.|+|||++.+. .++.++|||||||++|||++|.+||.+.........+.....
T Consensus       167 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~  246 (351)
T 3mi9_A          167 DFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCG  246 (351)
T ss_dssp             CCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             cchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC
Confidence            9999976532      122445678999999999764 589999999999999999999999998776554443321111


Q ss_pred             cccccc-----ccc--ccccc--ccCCCCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 FLADDC-----RLS--LIMDP--QLKGRFPL-----KAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ~~~~~~-----~~~--~~~~~--~l~~~~~~-----~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ......     ...  .....  ........     ..+..+.+|+.+||+.||.+|||+.|+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          247 SITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             CCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            000000     000  00000  00000000     124668899999999999999999999974

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.6e-41  Score=335.54  Aligned_cols=261  Identities=16%  Similarity=0.199  Sum_probs=199.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|....+   .+.+++|+..    ....+.+.+|+.++..++ ||||+++++++.......
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~----~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~  107 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITN---NEKVVVKILK----PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRT  107 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEC----SCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCC
T ss_pred             CCceEEEEEecccCCeEEEEEEECCC---CcEEEEEEec----ccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCc
Confidence            36799999999999999999986443   3455555543    233577899999999997 999999999998755578


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGla  331 (473)
                      .++||||+.+++|.+++.      .+++..+..++.||+.||+|||+++   |+||||||+|||++.++ .+||+|||++
T Consensus       108 ~~lv~e~~~~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a  178 (330)
T 3nsz_A          108 PALVFEHVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLA  178 (330)
T ss_dssp             EEEEEECCCCCCHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             eEEEEeccCchhHHHHHH------hCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCc
Confidence            999999999999999883      3889999999999999999999999   99999999999999776 8999999999


Q ss_pred             cccCCC-CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH-HHhHhh----------hcc
Q 011995          332 GHIPET-DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-ERNLVK----------WSR  398 (473)
Q Consensus       332 ~~~~~~-~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~-~~~~~~----------~~~  398 (473)
                      ...... ......++..|+|||.+.+ ..++.++|||||||++|||++|..||....... ....+.          +..
T Consensus       179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~  258 (330)
T 3nsz_A          179 EFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID  258 (330)
T ss_dssp             EECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             eEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHH
Confidence            876443 3345578899999999977 668999999999999999999999995543321 111110          000


Q ss_pred             cc-cccccccccc--------cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          399 PF-LADDCRLSLI--------MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       399 ~~-~~~~~~~~~~--------~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .. .........+        .........+..++.++.+||.+||+.||.+|||+.|+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          259 KYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             HTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00 0000000000        0001111123346788999999999999999999999987

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=332.86  Aligned_cols=250  Identities=19%  Similarity=0.304  Sum_probs=198.7

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..++|+..+.||+|+||.||+|....+   ++.+++|+....   .....+.+|+.++..++||||+++++++...  +.
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~   98 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKET---GQIVAIKQVPVE---SDLQEIIKEISIMQQCDSPHVVKYYGSYFKN--TD   98 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTT---CCEEEEEEEETT---SCCHHHHHHHHHHHTCCCTTBCCEEEEEEET--TE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCC---CCEEEEEecCch---HHHHHHHHHHHHHHhCCCCCCccEEEEEEeC--CE
Confidence            356799999999999999999986543   344556655432   2457789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++++|.+++..  ....+++..+..++.|++.||.|||+.+   |+|+||||+|||++.++.+||+|||++.
T Consensus        99 ~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~  173 (314)
T 3com_A           99 LWIVMEYCGAGSVSDIIRL--RNKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAG  173 (314)
T ss_dssp             EEEEEECCTTEEHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEeecCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccch
Confidence            9999999999999999853  2346899999999999999999999999   9999999999999999999999999997


Q ss_pred             ccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          333 HIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....  ......+++.|+|||.+.+..++.++|||||||++|||++|..||...........+....            
T Consensus       174 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~------------  241 (314)
T 3com_A          174 QLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNP------------  241 (314)
T ss_dssp             ECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC------------
T ss_pred             hhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCC------------
Confidence            66443  2234567899999999999889999999999999999999999998765543322211100            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .+.  ...+...+..+.+|+.+||..||.+|||+.++++
T Consensus       242 -~~~--~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          242 -PPT--FRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             -CCC--CSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             -Ccc--cCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence             000  0113345678999999999999999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.3e-41  Score=334.81  Aligned_cols=271  Identities=17%  Similarity=0.280  Sum_probs=207.1

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHh--CCCCCcccce
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLAS--LQHPNLCKLL  242 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~--l~HpnIv~l~  242 (473)
                      .++.--....++|...+.||+|+||.||+|...     ++.+++|+..    ......+.+|++++..  ++||||++++
T Consensus        32 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~vavK~~~----~~~~~~~~~e~~~~~~~~l~h~ni~~~~  102 (342)
T 1b6c_B           32 LPLLVQRTIARTIVLQESIGKGRFGEVWRGKWR-----GEEVAVKIFS----SREERSWFREAEIYQTVMLRHENILGFI  102 (342)
T ss_dssp             SCHHHHHHHHHHCEEEEEEEEETTEEEEEEEET-----TEEEEEEEEC----GGGHHHHHHHHHHHHHSCCCCTTBCCEE
T ss_pred             CceeecccccccEEEEeeecCCCCcEEEEEEEc-----CccEEEEEeC----chhHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence            334344455678999999999999999999864     2344555543    2345678889999988  7999999999


Q ss_pred             eeeecCCC--CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhh--------hcCCCceeecCCCC
Q 011995          243 GFHARDGS--DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH--------EEGPFQAMYNEFST  312 (473)
Q Consensus       243 g~~~~~~~--~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH--------~~~~~~ivHrDlkp  312 (473)
                      +++.....  ...++||||+++|+|.+++...    .+++..+..++.|++.||.|||        +.+   |+||||||
T Consensus       103 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp  175 (342)
T 1b6c_B          103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKS  175 (342)
T ss_dssp             EEEECCCSSCCCEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSG
T ss_pred             eeecccCCccceeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCH
Confidence            99877532  2789999999999999999542    5899999999999999999999        777   99999999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCCC------ccCcccccccCChhhhhcCC------CCCcCCchHHHHHHHHHHcC--
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPETD------ISNSSVAAANLSVETLERGL------LTPKSNVWSFGIVLLELLTG--  378 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~~------~~~~~~t~~y~aPE~~~~~~------~s~~sDvwSlGvvl~elltG--  378 (473)
                      +|||++.++.+||+|||++.......      .....+|+.|+|||.+.+..      ++.++|||||||++|||++|  
T Consensus       176 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~  255 (342)
T 1b6c_B          176 KNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS  255 (342)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccC
Confidence            99999999999999999997664332      23447889999999997753      33689999999999999999  


Q ss_pred             --------CCCCCCCChHHH--HhHhhhcccccccccccccccccccCCC-CCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          379 --------RKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKGR-FPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       379 --------~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                              +.||........  ......   ..      .....+.+... ....+...+.+|+.+||+.||++|||+.+
T Consensus       256 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~  326 (342)
T 1b6c_B          256 IGGIHEDYQLPYYDLVPSDPSVEEMRKV---VC------EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALR  326 (342)
T ss_dssp             BTTBCCCCCCTTTTTSCSSCCHHHHHHH---HT------TSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             cCCcccccccCccccCcCcccHHHHHHH---HH------HHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHH
Confidence                    778865422110  000000   00      00011111111 12367788999999999999999999999


Q ss_pred             HHHHHHhhhcccC
Q 011995          448 IFEELDRQESRKS  460 (473)
Q Consensus       448 il~~L~~l~~~~~  460 (473)
                      |++.|+++....+
T Consensus       327 i~~~L~~i~~~~~  339 (342)
T 1b6c_B          327 IKKTLSQLSQQEG  339 (342)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.2e-42  Score=340.01  Aligned_cols=260  Identities=20%  Similarity=0.299  Sum_probs=200.0

Q ss_pred             CHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceee
Q 011995          166 PLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGF  244 (473)
Q Consensus       166 ~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~  244 (473)
                      .+.++....++|+..+.||+|+||.||+|....+   .+.+++|+...  .......+.+|+.++.++ +||||++++++
T Consensus        15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vaiK~~~~--~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   89 (326)
T 2x7f_A           15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKT---GQLAAIKVMDV--TGDEEEEIKQEINMLKKYSHHRNIATYYGA   89 (326)
T ss_dssp             -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEC--CSSTTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred             cchhccCCCCcEEEEEEeccCCCEEEEEEEECCC---CCeEEEEEEec--CcccHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence            3334445578899999999999999999996543   34455555543  233457889999999999 89999999999


Q ss_pred             eecCC----CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          245 HARDG----SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       245 ~~~~~----~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      +....    .+..++||||+++|+|.+++... ....+++..+..++.||+.||.|||+++   |+|+||||+|||++.+
T Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~  165 (326)
T 2x7f_A           90 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNT-KGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTEN  165 (326)
T ss_dssp             EEECC--CCCCEEEEEEECCTTEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTT
T ss_pred             EeeccCccccceEEEEEEcCCCCcHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCC
Confidence            87642    36889999999999999999653 2356899999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCC--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhH
Q 011995          321 FSAKLSGYGCAGHIPET--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL  393 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~  393 (473)
                      +.+||+|||++......  ......+++.|+|||++.     +..++.++|||||||++|||++|..||...........
T Consensus       166 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~  245 (326)
T 2x7f_A          166 AEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL  245 (326)
T ss_dssp             CCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH
T ss_pred             CCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHH
Confidence            99999999998766432  223456889999999986     55689999999999999999999999987665443322


Q ss_pred             hhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          394 VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      +....             .+.+   ....++..+.+|+.+||..||.+|||+.++++
T Consensus       246 ~~~~~-------------~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          246 IPRNP-------------APRL---KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             HHHSC-------------CCCC---SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhcCc-------------cccC---CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            21100             0000   12234578999999999999999999999987

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=7.2e-42  Score=369.15  Aligned_cols=249  Identities=18%  Similarity=0.222  Sum_probs=206.0

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ..++|+..+.||+|+||.||+|....   +.+.+++|+.....  .....+.+..|..+|..+ +|+||+.+++++.+. 
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~---~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~-  414 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKG---TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-  414 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESS---SCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCS-
T ss_pred             cccceEEEEEEccCCCEEEEEEEECC---CCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeC-
Confidence            45789999999999999999999654   34556666655321  233456788999999988 799999999988765 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       +.+||||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||
T Consensus       415 -~~~~lV~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFG  487 (674)
T 3pfq_A          415 -DRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFG  487 (674)
T ss_dssp             -SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCT
T ss_pred             -CEEEEEEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecc
Confidence             7899999999999999999643   36999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCC--CCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          330 CAGHIPE--TDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       330 la~~~~~--~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      +++....  .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+....+....         
T Consensus       488 la~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~---------  558 (674)
T 3pfq_A          488 MCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN---------  558 (674)
T ss_dssp             TCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSC---------
T ss_pred             eeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCC---------
Confidence            9986432  23455689999999999999999999999999999999999999998876655443332110         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCH-----HHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM-----RSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~-----~eil~  450 (473)
                               ..++...+.++.+||.+||+.||.+||++     +||++
T Consensus       559 ---------~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          559 ---------VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             ---------CCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             ---------CCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence                     12345567889999999999999999997     66664

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=3.7e-42  Score=335.50  Aligned_cols=261  Identities=21%  Similarity=0.328  Sum_probs=184.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|...+.||+|+||.||+|...   ...+.+++|+............+.+|+.++..++||||+++++++...  +..
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   88 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCA---PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK--DEL   88 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC-------CEEEEECCC----------------CCCCCCCTTBCCEEEEEESS--SCE
T ss_pred             hhhhhhhheeccccceEEEEEEEC---CCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeec--CCc
Confidence            568999999999999999999843   233455555444333344567789999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhc-----CCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          254 MLIYERLFHGSLDRLIYG-----RSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~-----~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                      ++||||+++++|.+++..     ......+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+||
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~df  165 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADF  165 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCC
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEec
Confidence            999999999999999853     112456899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCC-------ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc
Q 011995          329 GCAGHIPETD-------ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF  400 (473)
Q Consensus       329 Gla~~~~~~~-------~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~  400 (473)
                      |++.......       .....+|+.|+|||.+.+ ..++.++|||||||++|||++|+.||................+.
T Consensus       166 g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  245 (303)
T 2vwi_A          166 GVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPP  245 (303)
T ss_dssp             HHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCC
T ss_pred             cchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCC
Confidence            9987653221       123467899999999876 56899999999999999999999999876544332211110000


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .    ......++.    .....+.++.+++.+||+.||.+|||+.++++
T Consensus       246 ~----~~~~~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          246 S----LETGVQDKE----MLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             C----TTC-----C----CCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             c----cccccccch----hhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            0    000011111    12234578899999999999999999999987

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=4.6e-43  Score=353.75  Aligned_cols=253  Identities=15%  Similarity=0.195  Sum_probs=191.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHH---HHHHhCCCCCcccce------
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDV---NTLASLQHPNLCKLL------  242 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei---~~l~~l~HpnIv~l~------  242 (473)
                      .++|...+.||+|+||.||+|...   ..++.+++|+....  ......+.+.+|+   .+|+.++|||||+++      
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~  148 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQ---ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP  148 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC----CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCC
T ss_pred             CceEEEcceeecCCCEEEEEEEEC---CCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhh
Confidence            467888999999999999999853   33456667766543  2344567889999   555566899999998      


Q ss_pred             -eeeecCCC----------C-----ceEEEEEeccCCChhhhhhcCC----CCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 011995          243 -GFHARDGS----------D-----QRMLIYERLFHGSLDRLIYGRS----DGPPIDWNTRVKIALCAAQGLTFLHEEGP  302 (473)
Q Consensus       243 -g~~~~~~~----------~-----~~~lV~E~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~L~yLH~~~~  302 (473)
                       +++...+.          +     ..||||||+ +|+|.+++....    ....+++..+..|+.||+.||+|||+++ 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-  226 (377)
T 3byv_A          149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG-  226 (377)
T ss_dssp             SEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC-
Confidence             55544311          1     378999999 689999996421    1123446888999999999999999999 


Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcC-----------CCCCcCCchHHHHH
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERG-----------LLTPKSNVWSFGIV  371 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~-----------~~s~~sDvwSlGvv  371 (473)
                        |+||||||+||||+.++.+||+|||+++.... ......+ +.|+|||++.+.           .++.++|||||||+
T Consensus       227 --ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i  302 (377)
T 3byv_A          227 --LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV  302 (377)
T ss_dssp             --EECSCCCGGGEEECTTCCEEECCGGGCEETTC-EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred             --eecCCCCHHHEEEcCCCCEEEEechhheecCC-cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence              99999999999999999999999999986433 2344456 999999999887           79999999999999


Q ss_pred             HHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH-
Q 011995          372 LLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE-  450 (473)
Q Consensus       372 l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~-  450 (473)
                      +|||++|+.||...........+                ..      ....++.++.+||.+||+.||.+|||+.++++ 
T Consensus       303 l~elltg~~Pf~~~~~~~~~~~~----------------~~------~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  360 (377)
T 3byv_A          303 IYWIWCADLPITKDAALGGSEWI----------------FR------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAMET  360 (377)
T ss_dssp             HHHHHHSSCCC------CCSGGG----------------GS------SCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred             HHHHHHCCCCCcccccccchhhh----------------hh------hccCCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence            99999999999764422211100                00      01234578999999999999999999999996 


Q ss_pred             -HHHhhhc
Q 011995          451 -ELDRQES  457 (473)
Q Consensus       451 -~L~~l~~  457 (473)
                       .++.+..
T Consensus       361 p~f~~~~~  368 (377)
T 3byv_A          361 PEYEQLRT  368 (377)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence             4555543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=7.8e-42  Score=330.24  Aligned_cols=249  Identities=16%  Similarity=0.203  Sum_probs=198.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      ..++|...+.||+|+||.||+|....+   .+.+++|+.... ........+.+|+.++..+ +||||+++++++.+.  
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~--   83 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLD---GCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED--   83 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEET--
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCC---CceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecC--
Confidence            457899999999999999999996533   345566665543 2345567889999999999 999999999999876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---------
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSD-GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---------  320 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---------  320 (473)
                      +..++||||+++|+|.+++..... ...+++..+..++.||+.||.|||+++   |+||||||+|||++.+         
T Consensus        84 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~  160 (289)
T 1x8b_A           84 DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEE  160 (289)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC-----------
T ss_pred             CeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccc
Confidence            789999999999999999964311 246899999999999999999999999   9999999999999844         


Q ss_pred             ----------CcEEEeccCCCcccCCCCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHH
Q 011995          321 ----------FSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE  389 (473)
Q Consensus       321 ----------~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~  389 (473)
                                ..+||+|||++......  ....+|+.|+|||.+.+. .++.++|||||||++|||++|.+++.......
T Consensus       161 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~  238 (289)
T 1x8b_A          161 GDEDDWASNKVMFKIGDLGHVTRISSP--QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWH  238 (289)
T ss_dssp             ---------CCCEEECCCTTCEETTCS--CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHH
T ss_pred             cccccccCCceEEEEcccccccccCCc--cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHH
Confidence                      47999999999876543  234689999999999766 56689999999999999999998775432211


Q ss_pred             HHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          390 ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .  +...                  ....++..++..+.+|+.+||+.||.+|||+.++++.
T Consensus       239 ~--~~~~------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          239 E--IRQG------------------RLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             H--HHTT------------------CCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             H--HHcC------------------CCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence            1  1100                  0011233456789999999999999999999999863

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-42  Score=340.93  Aligned_cols=263  Identities=16%  Similarity=0.231  Sum_probs=189.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeec-----
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHAR-----  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~-----  247 (473)
                      ..+|+..+.||+|+||.||+|....+   .+.+++|+.... .......+.+|+.++.++. ||||+++++++..     
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~  102 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGS---GREYALKRLLSN-EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEES  102 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTT---CCEEEEEEEEES-SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCC---CcEEEEEEecCC-chHHHHHHHHHHHHHHHhccCCChhhcccccccccccc
Confidence            45899999999999999999996543   344555544322 3344577899999999996 9999999999852     


Q ss_pred             -CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          248 -DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       248 -~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                       .....+++||||+. |+|.+++........+++..+..++.||+.||.|||++++ +|+||||||+|||++.++.+||+
T Consensus       103 ~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~-~ivH~Dikp~NIl~~~~~~~kl~  180 (337)
T 3ll6_A          103 DTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKP-PIIHRDLKVENLLLSNQGTIKLC  180 (337)
T ss_dssp             TTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSS-CCBCCCCCGGGCEECTTSCEEBC
T ss_pred             ccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCC-CEEEccCCcccEEECCCCCEEEe
Confidence             22245899999995 7999988653344579999999999999999999999863 39999999999999999999999


Q ss_pred             ccCCCcccCCCCc--------------cCcccccccCChhhh---hcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH
Q 011995          327 GYGCAGHIPETDI--------------SNSSVAAANLSVETL---ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE  389 (473)
Q Consensus       327 DFGla~~~~~~~~--------------~~~~~t~~y~aPE~~---~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~  389 (473)
                      |||++........              ....+|+.|+|||++   .+..++.++|||||||++|||++|+.||.......
T Consensus       181 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~  260 (337)
T 3ll6_A          181 DFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR  260 (337)
T ss_dssp             CCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred             cCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH
Confidence            9999987643221              134578999999998   56668899999999999999999999997543221


Q ss_pred             HHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCCC
Q 011995          390 ERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSS  462 (473)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~~  462 (473)
                      .   ....                 .........+..+.+|+.+||+.||.+|||+.|+++.|+.+.......
T Consensus       261 ~---~~~~-----------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~~  313 (337)
T 3ll6_A          261 I---VNGK-----------------YSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNVN  313 (337)
T ss_dssp             -------------------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTCC
T ss_pred             h---hcCc-----------------ccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccCCC
Confidence            1   0000                 000001122345789999999999999999999999999988665543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-41  Score=330.06  Aligned_cols=253  Identities=15%  Similarity=0.193  Sum_probs=199.4

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~  249 (473)
                      ..++|.+.+.||+|+||.||+|....   ....+++|+.....   .......+.+|+.+++.++||||+++++++....
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSE---TLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEE   79 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTT---TCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-
T ss_pred             cccceeEeeEEecCCCeEEEEEEECC---CCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCC
Confidence            35789999999999999999998543   33455566554321   2344577999999999999999999999986555


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ....++||||+.++ |.+++... ....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||
T Consensus        80 ~~~~~lv~e~~~~~-l~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg  154 (305)
T 2wtk_C           80 KQKMYMVMEYCVCG-MQEMLDSV-PEKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALG  154 (305)
T ss_dssp             --CEEEEEECCSEE-HHHHHHHS-TTCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCT
T ss_pred             CCeEEEEehhccCC-HHHHHHhC-cccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeeccc
Confidence            57899999999876 77777543 3456999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC----CccCcccccccCChhhhhcCC--CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          330 CAGHIPET----DISNSSVAAANLSVETLERGL--LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       330 la~~~~~~----~~~~~~~t~~y~aPE~~~~~~--~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      ++......    ......+++.|+|||++.+..  ++.++|||||||++|||++|+.||...........+....     
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~-----  229 (305)
T 2wtk_C          155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGS-----  229 (305)
T ss_dssp             TCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCC-----
T ss_pred             cccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCC-----
Confidence            99766422    123446889999999997644  3779999999999999999999998766544333222110     


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                   ..++..++..+.+|+.+||..||.+|||+.++++.
T Consensus       230 -------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          230 -------------YAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             -------------CCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             -------------CCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                         01233455788999999999999999999999975

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=5.5e-42  Score=350.87  Aligned_cols=266  Identities=17%  Similarity=0.173  Sum_probs=195.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC----
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG----  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~----  249 (473)
                      ..+|...+.||+|+||.||+|.+..+   ++.+++|+....     ...+.+|+++|+.++|||||++++++...+    
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~---~~~vaiK~~~~~-----~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~  124 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLCDS---GELVAIKKVLQD-----KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKD  124 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEECC-----TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTT
T ss_pred             cceEEeeeEEeeCCCEEEEEEEECCC---CcEEEEEEeccc-----chhHHHHHHHHHHcCCCCccceeeEEeccCCCCc
Confidence            34688999999999999999997543   344555554322     223457999999999999999999886432    


Q ss_pred             CCceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC-CcEEEec
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSG  327 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~-~~vkl~D  327 (473)
                      ...+++||||+++ +|.+.+... .....+++..+..++.||+.||+|||+++   |+||||||+||||+.+ +.+||+|
T Consensus       125 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~D  200 (420)
T 1j1b_A          125 EVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCD  200 (420)
T ss_dssp             EEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECC
T ss_pred             ceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEecc
Confidence            1247799999975 666655321 13457999999999999999999999999   9999999999999965 6789999


Q ss_pred             cCCCcccCCC-CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc--cccc-
Q 011995          328 YGCAGHIPET-DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR--PFLA-  402 (473)
Q Consensus       328 FGla~~~~~~-~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~--~~~~-  402 (473)
                      ||+++.+... ......+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+....+....  +... 
T Consensus       201 FG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~  280 (420)
T 1j1b_A          201 FGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQ  280 (420)
T ss_dssp             CTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHH
T ss_pred             chhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            9999876433 23455789999999999765 68999999999999999999999998876544332221110  0000 


Q ss_pred             ---cccccccccccccC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 ---DDCRLSLIMDPQLK-----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ---~~~~~~~~~~~~l~-----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .........-+.+.     ..++...+.++.+||.+||+.||.+|||+.|+++.
T Consensus       281 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          281 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             HHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence               00000000011111     01233456889999999999999999999999863

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=4.8e-42  Score=337.42  Aligned_cols=265  Identities=15%  Similarity=0.204  Sum_probs=202.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC--CCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD--GSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~--~~~  251 (473)
                      .++|...+.||+|+||.||++....+   .+.+++|+.... .....+.+.+|+++++.++||||+++++++...  ...
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHD---GHFYALKRILCH-EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKH  103 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTT---CCEEEEEEEEES-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCC---CcEEEEEEEecC-CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCc
Confidence            46899999999999999999986433   345556654432 344567889999999999999999999998632  225


Q ss_pred             ceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ..++||||+.+|+|.+++... .....+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~  180 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGS  180 (317)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCc
Confidence            789999999999999988642 12457999999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC-----------ccCcccccccCChhhhhcCC---CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          331 AGHIPETD-----------ISNSSVAAANLSVETLERGL---LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       331 a~~~~~~~-----------~~~~~~t~~y~aPE~~~~~~---~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      +.......           .....+|+.|+|||.+.+..   ++.++|||||||++|||++|+.||..............
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~  260 (317)
T 2buj_A          181 MNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV  260 (317)
T ss_dssp             CEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHH
T ss_pred             chhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHh
Confidence            87653211           11234588999999987554   68999999999999999999999953111000000000


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                           .          ...........+..+.+++.+||+.||.+|||+.+|++.|+.+.....
T Consensus       261 -----~----------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~  309 (317)
T 2buj_A          261 -----Q----------NQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP  309 (317)
T ss_dssp             -----H----------CC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred             -----h----------ccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence                 0          000011123456789999999999999999999999999998875443

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-42  Score=345.77  Aligned_cols=257  Identities=18%  Similarity=0.235  Sum_probs=201.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC---CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      .++|...+.||+|+||.||+|....+....+.+++|+.....   .......+.+|+++|..+ +||||+++++++... 
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-  131 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE-  131 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC-
Confidence            468999999999999999999975434445666666654321   223446678899999999 799999999998776 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       +..+|||||+++|+|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+||||+.++.+||+|||
T Consensus       132 -~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG  204 (355)
T 1vzo_A          132 -TKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFG  204 (355)
T ss_dssp             -TEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSS
T ss_pred             -ceEEEEeecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCC
Confidence             7899999999999999999643   36899999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC---CccCcccccccCChhhhhcC--CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          330 CAGHIPET---DISNSSVAAANLSVETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       330 la~~~~~~---~~~~~~~t~~y~aPE~~~~~--~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      +++.+...   ......+|+.|+|||++.+.  .++.++|||||||++|||++|+.||...........+..  ....  
T Consensus       205 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~--~~~~--  280 (355)
T 1vzo_A          205 LSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISR--RILK--  280 (355)
T ss_dssp             EEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHH--HHHH--
T ss_pred             CCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHH--HHhc--
Confidence            99765332   22345789999999999863  478999999999999999999999975432211111100  0000  


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEEL  452 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~L  452 (473)
                                ....++...+..+.+||.+||..||.+||     ++.++++..
T Consensus       281 ----------~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          281 ----------SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             ----------CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             ----------cCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence                      01122445567899999999999999999     999998754

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=2.3e-41  Score=339.73  Aligned_cols=267  Identities=13%  Similarity=0.176  Sum_probs=202.9

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      ..++|+..+.||+|+||.||+|....+   ...+++|+............+.+|++++.+++||||+++++++....   
T Consensus        25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  101 (364)
T 3qyz_A           25 VGPRYTNLSYIGEGAYGMVCSAYDNLN---KVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ  101 (364)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT
T ss_pred             ccccEEEEEEeecCCCeEEEEEEECCC---CeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccc
Confidence            356899999999999999999985543   34556666554344445578899999999999999999999986542   


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ....++||||+. |+|.+++..    ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus       102 ~~~~~iv~e~~~-~~L~~~l~~----~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg  173 (364)
T 3qyz_A          102 MKDVYIVQDLME-TDLYKLLKT----QHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFG  173 (364)
T ss_dssp             CCCEEEEEECCS-EEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cceEEEEEcccC-cCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCc
Confidence            246899999996 599998854    35999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCC-----ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          330 CAGHIPETD-----ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       330 la~~~~~~~-----~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      ++.......     .....+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+....+.........
T Consensus       174 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~  253 (364)
T 3qyz_A          174 LARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ  253 (364)
T ss_dssp             TCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCH
T ss_pred             ceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCH
Confidence            998664321     234578999999998765 44899999999999999999999999887655543332210000000


Q ss_pred             cccccccc---------ccccCCC-----CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          404 DCRLSLIM---------DPQLKGR-----FPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       404 ~~~~~~~~---------~~~l~~~-----~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      . .+..+.         .......     +....+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          254 E-DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             H-HHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             H-HHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0 000000         0000000     112346789999999999999999999999873

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=2.7e-41  Score=346.99  Aligned_cols=199  Identities=19%  Similarity=0.240  Sum_probs=163.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--  250 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+..... .....+.+.+|+.+|+.++|+||+++++++...+.  
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~---~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  101 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNT---EKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLK  101 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTT---TEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTT
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCC---CcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCc
Confidence            56899999999999999999986543   4556666654332 33445788999999999999999999999876432  


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       ...|+||||+. |+|.+++..   ...+++..+..++.||+.||.|||+.+   |+||||||+||||+.++.+||+|||
T Consensus       102 ~~~~~lv~e~~~-~~L~~~~~~---~~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFG  174 (432)
T 3n9x_A          102 FDELYIVLEIAD-SDLKKLFKT---PIFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFG  174 (432)
T ss_dssp             CCCEEEEEECCS-EEHHHHHHS---SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CCeEEEEEecCC-cCHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCC
Confidence             56899999985 699999954   346999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCC------------------------ccCcccccccCChhhh-hcCCCCCcCCchHHHHHHHHHHcCCCCC
Q 011995          330 CAGHIPETD------------------------ISNSSVAAANLSVETL-ERGLLTPKSNVWSFGIVLLELLTGRKNL  382 (473)
Q Consensus       330 la~~~~~~~------------------------~~~~~~t~~y~aPE~~-~~~~~s~~sDvwSlGvvl~elltG~~p~  382 (473)
                      +++......                        ....++|++|+|||++ ....++.++|||||||++|||++|..||
T Consensus       175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            998764321                        2455789999999987 4556999999999999999999854443

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=6.5e-41  Score=343.80  Aligned_cols=265  Identities=16%  Similarity=0.150  Sum_probs=201.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC------CCCCcccceeeeec
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL------QHPNLCKLLGFHAR  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l------~HpnIv~l~g~~~~  247 (473)
                      ..+|+..+.||+|+||.||+|.....   .+.+++|+..  ........+.+|+.++..+      .|+||+++++++..
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~---~~~vAvK~~~--~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~  170 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKV---HQHVALKMVR--NEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF  170 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTT---TEEEEEEEEC--SCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCC---CcEEEEEEEC--CccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc
Confidence            45799999999999999999986543   3445555543  3444556788899988887      57799999999987


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc--EEE
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS--AKL  325 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~--vkl  325 (473)
                      .  ...++||||+. ++|.+++... ....+++..+..++.||+.||+|||+++   ||||||||+||||+.++.  +||
T Consensus       171 ~--~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL  243 (429)
T 3kvw_A          171 R--NHICMTFELLS-MNLYELIKKN-KFQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKV  243 (429)
T ss_dssp             T--TEEEEEECCCC-CBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEE
T ss_pred             C--CeEEEEEeccC-CCHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEE
Confidence            6  78999999995 6999988654 2345999999999999999999999999   999999999999999887  999


Q ss_pred             eccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc------
Q 011995          326 SGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP------  399 (473)
Q Consensus       326 ~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~------  399 (473)
                      +|||++..... ......+|+.|+|||++.+..++.++|||||||++|||++|.+||.+....+....+.....      
T Consensus       244 ~DFG~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~  322 (429)
T 3kvw_A          244 IDFGSSCYEHQ-RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKL  322 (429)
T ss_dssp             CCCTTCEETTC-CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred             eecccceecCC-cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHH
Confidence            99999976543 33456789999999999999999999999999999999999999988766544332211000      


Q ss_pred             ---------cccccc-----ccccc-----------------cccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCC
Q 011995          400 ---------FLADDC-----RLSLI-----------------MDPQLKG----RFPLKAARTVADIALRCLQKEPSERPT  444 (473)
Q Consensus       400 ---------~~~~~~-----~~~~~-----------------~~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt  444 (473)
                               +.....     ....+                 ..+....    .+....+..+.+||.+||+.||++|||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpt  402 (429)
T 3kvw_A          323 LDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMT  402 (429)
T ss_dssp             HHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCC
Confidence                     000000     00000                 0000000    011123577899999999999999999


Q ss_pred             HHHHHHH
Q 011995          445 MRSIFEE  451 (473)
Q Consensus       445 ~~eil~~  451 (473)
                      +.|+|+.
T Consensus       403 a~e~L~H  409 (429)
T 3kvw_A          403 PGQALRH  409 (429)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhCC
Confidence            9999973

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=8e-42  Score=329.00  Aligned_cols=249  Identities=17%  Similarity=0.280  Sum_probs=195.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|.+.+.||+|+||.||+|....+   ++.+++|+.....  .......+.+|+.+++.++||||+++++++...  +
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~   84 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLT---GHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTP--T   84 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--S
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCC---CceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecC--C
Confidence            46799999999999999999986532   3445566554321  223456788999999999999999999999776  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..++||||+++++|.+++...   ..+++..+..++.||+.||.|||+++   |+|+||||+|||++.++.+||+|||++
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~  158 (276)
T 2h6d_A           85 DFFMVMEYVSGGELFDYICKH---GRVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLS  158 (276)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGG
T ss_pred             eEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccc
Confidence            899999999999999999543   35899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ....... .....+++.|+|||.+.+..+ +.++||||||+++|+|++|..||...........+.....          
T Consensus       159 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~----------  228 (276)
T 2h6d_A          159 NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVF----------  228 (276)
T ss_dssp             GCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC----------
T ss_pred             cccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcc----------
Confidence            8765433 234467899999999987765 6899999999999999999999987654443322221100          


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              .++...+..+.+++.+||+.||.+|||+.++++.
T Consensus       229 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          229 --------YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             --------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             --------cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                    1133345788999999999999999999999974

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=4.7e-41  Score=338.36  Aligned_cols=266  Identities=14%  Similarity=0.164  Sum_probs=194.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|...+.||+|+||.||+|....   ..+.+++|+..... .......+.+|+.+++.++||||+++++++...+   
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  100 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAI---LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE  100 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETT---TTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTT
T ss_pred             hhheeEeeeeEecCCEEEEEEEECC---CCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccc
Confidence            4689999999999999999998544   34556666665432 3344567889999999999999999999987642   


Q ss_pred             -CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          250 -SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       250 -~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                       ....|+||||++ |+|.+.+..     .+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+||
T Consensus       101 ~~~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Df  171 (371)
T 2xrw_A          101 EFQDVYIVMELMD-ANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDF  171 (371)
T ss_dssp             TCCEEEEEEECCS-EEHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccceEEEEEcCC-CCHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEe
Confidence             137899999996 478888842     4899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccc-------
Q 011995          329 GCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF-------  400 (473)
Q Consensus       329 Gla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~-------  400 (473)
                      |++....... .....+|+.|+|||++.+..++.++|||||||++|||++|..||.+.........+......       
T Consensus       172 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  251 (371)
T 2xrw_A          172 GLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMK  251 (371)
T ss_dssp             CC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHT
T ss_pred             ecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            9998764432 34457899999999999989999999999999999999999999887654433222110000       


Q ss_pred             ---------cccc-----cccccccccccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          401 ---------LADD-----CRLSLIMDPQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       401 ---------~~~~-----~~~~~~~~~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                               ....     ..+.........   .......+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          252 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             TSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                     0000     000000000000   00112347789999999999999999999999874

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=9.3e-42  Score=346.30  Aligned_cols=266  Identities=15%  Similarity=0.146  Sum_probs=194.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS---  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~---  250 (473)
                      ..+|...+.||+|+||+||+|....+..    +++++....     .....+|+++++.++||||+++++++...+.   
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~----~aikk~~~~-----~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~  109 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDE----VAIKKVLQD-----KRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKD  109 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEE----EEEEEEECC-----TTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSS
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCe----EEEEEEecC-----cchHHHHHHHHHhCCCCCcceEEEEEEecCCCCC
Confidence            3579999999999999999999755432    334433221     1223479999999999999999999865421   


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCCcEEEecc
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGY  328 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DF  328 (473)
                       ..+++||||++++.+............+++..+..++.||+.||+|||+++   |+||||||+||||+ .++.+||+||
T Consensus       110 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DF  186 (394)
T 4e7w_A          110 EVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDF  186 (394)
T ss_dssp             CEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCC
T ss_pred             ceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeC
Confidence             237899999977544333321123457999999999999999999999999   99999999999999 7899999999


Q ss_pred             CCCcccCCC-CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc-c-ccc---
Q 011995          329 GCAGHIPET-DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS-R-PFL---  401 (473)
Q Consensus       329 Gla~~~~~~-~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~-~-~~~---  401 (473)
                      |+++..... ......+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+....+... . +..   
T Consensus       187 G~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~  266 (394)
T 4e7w_A          187 GSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQI  266 (394)
T ss_dssp             TTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             CCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            999876433 33455789999999999765 4899999999999999999999999987655443322110 0 000   


Q ss_pred             ---cc---ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 ---AD---DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 ---~~---~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ..   ...+..+....+...++...+.++.+|+.+||+.||.+|||+.|+++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          267 KTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             HHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence               00   000000000111111233466889999999999999999999999974

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.2e-42  Score=345.36  Aligned_cols=268  Identities=16%  Similarity=0.227  Sum_probs=198.5

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC-
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG-  249 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~-  249 (473)
                      ....++|...+.||+|+||+||+|....   +++.+++|+....     .....+|+++|+.++|||||++++++...+ 
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~---~~~~vAiK~~~~~-----~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   74 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIE---SGKRFALKKVLQD-----PRYKNRELDIMKVLDHVNIIKLVDYFYTTGD   74 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETT---TCCEEEEEEEECC-----TTSCCHHHHHHTTCCCTTBCCEEEEEEEC--
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECC---CCCEEEEEEEecC-----cchHHHHHHHHHHcCCCCccchhheeeecCc
Confidence            4456789999999999999999998544   3455666655432     223447999999999999999999986532 


Q ss_pred             -----------------------------------CCceEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHH
Q 011995          250 -----------------------------------SDQRMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQG  293 (473)
Q Consensus       250 -----------------------------------~~~~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~  293 (473)
                                                         ...+++||||++ |+|.+.+... .....+++..+..++.||+.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~a  153 (383)
T 3eb0_A           75 EEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRA  153 (383)
T ss_dssp             -----------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence                                               234889999997 5887776431 134579999999999999999


Q ss_pred             HHHhhhcCCCceeecCCCCCceeeC-CCCcEEEeccCCCcccCCC-CccCcccccccCChhhhhcCC-CCCcCCchHHHH
Q 011995          294 LTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGCAGHIPET-DISNSSVAAANLSVETLERGL-LTPKSNVWSFGI  370 (473)
Q Consensus       294 L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGv  370 (473)
                      |.|||+++   |+||||||+|||++ .++.+||+|||++...... ......+|+.|+|||.+.+.. ++.++|||||||
T Consensus       154 L~~LH~~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  230 (383)
T 3eb0_A          154 VGFIHSLG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGC  230 (383)
T ss_dssp             HHHHHTTT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred             HHHHHHCc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHH
Confidence            99999999   99999999999997 6899999999999876433 334557789999999987754 899999999999


Q ss_pred             HHHHHHcCCCCCCCCChHHHHhHhhhcc--cccc---------cccccccccccccCCCCCHHHHHHHHHHHHHhcccCC
Q 011995          371 VLLELLTGRKNLDSRHPKEERNLVKWSR--PFLA---------DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEP  439 (473)
Q Consensus       371 vl~elltG~~p~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP  439 (473)
                      ++|||++|+.||.+....+....+....  +...         .......+........++...+.++.+|+.+||+.||
T Consensus       231 il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  310 (383)
T 3eb0_A          231 VFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP  310 (383)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence            9999999999999876655433221100  0000         0000000011111111344567889999999999999


Q ss_pred             CCCCCHHHHHH
Q 011995          440 SERPTMRSIFE  450 (473)
Q Consensus       440 ~~RPt~~eil~  450 (473)
                      .+|||+.|+++
T Consensus       311 ~~R~t~~e~l~  321 (383)
T 3eb0_A          311 DLRINPYEAMA  321 (383)
T ss_dssp             GGSCCHHHHHT
T ss_pred             hhCCCHHHHhc
Confidence            99999999985

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=4.5e-41  Score=340.38  Aligned_cols=266  Identities=18%  Similarity=0.222  Sum_probs=200.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC--------CCCcccceeee
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ--------HPNLCKLLGFH  245 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~--------HpnIv~l~g~~  245 (473)
                      .++|.+.+.||+|+||+||+|+...+   .+.+++|+..  ......+.+.+|+.+++.++        |+||+++++++
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~--~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~  110 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQG---KKFVAMKVVK--SAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDF  110 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEC--SCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCC---CeEEEEEEEe--cCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecce
Confidence            46799999999999999999986543   3445555543  34455678899999999985        78899999988


Q ss_pred             ecC--CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCC-
Q 011995          246 ARD--GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDF-  321 (473)
Q Consensus       246 ~~~--~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~-  321 (473)
                      ...  .....||||||+ +++|.+.+... ....+++..+..++.||+.||.|||++ +   |+||||||+||||+.++ 
T Consensus       111 ~~~~~~~~~~~lv~e~~-~~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~  185 (397)
T 1wak_A          111 KISGVNGTHICMVFEVL-GHHLLKWIIKS-NYQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQ  185 (397)
T ss_dssp             EEEETTEEEEEEEECCC-CCBHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHH
T ss_pred             eecCCCCceEEEEEecc-CccHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccch
Confidence            732  236799999999 66776666543 235699999999999999999999998 8   99999999999999775 


Q ss_pred             ------------------------------------------------cEEEeccCCCcccCCCCccCcccccccCChhh
Q 011995          322 ------------------------------------------------SAKLSGYGCAGHIPETDISNSSVAAANLSVET  353 (473)
Q Consensus       322 ------------------------------------------------~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~  353 (473)
                                                                      .+||+|||++..... ......+|+.|+|||+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~-~~~~~~gt~~y~aPE~  264 (397)
T 1wak_A          186 YIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK-HFTEDIQTRQYRSLEV  264 (397)
T ss_dssp             HHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB-CSCSCCSCGGGCCHHH
T ss_pred             hhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc-cCccCCCCCcccCChh
Confidence                                                            799999999987643 3445678999999999


Q ss_pred             hhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH------HHhHh-hh--------------cccccccccccccccc
Q 011995          354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE------ERNLV-KW--------------SRPFLADDCRLSLIMD  412 (473)
Q Consensus       354 ~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~------~~~~~-~~--------------~~~~~~~~~~~~~~~~  412 (473)
                      +.+..++.++|||||||++|||++|+.||.......      ....+ ..              ...+.........+.+
T Consensus       265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  344 (397)
T 1wak_A          265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK  344 (397)
T ss_dssp             HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence            999999999999999999999999999997654211      11111 10              0000111101111000


Q ss_pred             cc---------cCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQ---------LKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~---------l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..         -...++...+..+.+||.+||+.||.+|||+.|+++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            00         011245678889999999999999999999999986

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=2.4e-41  Score=338.88  Aligned_cols=276  Identities=15%  Similarity=0.153  Sum_probs=199.9

Q ss_pred             CHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC----------hhhHhHHHHHHHHHhCCC
Q 011995          166 PLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----------QGVKEFINDVNTLASLQH  235 (473)
Q Consensus       166 ~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~Ei~~l~~l~H  235 (473)
                      ...++....++|...+.||+|+||.||+|...+    +..+++|+.......          ...+.+.+|+.++.+++|
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   88 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSE----GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHH   88 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTT----SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCC----CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCC
Confidence            356788889999999999999999999998543    344555554332211          123778999999999999


Q ss_pred             CCcccceeeeecC---CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCC
Q 011995          236 PNLCKLLGFHARD---GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST  312 (473)
Q Consensus       236 pnIv~l~g~~~~~---~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp  312 (473)
                      |||+++++++...   .....|+||||+. |+|.+++..  ....+++..+..++.||+.||.|||+++   |+||||||
T Consensus        89 ~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp  162 (362)
T 3pg1_A           89 PNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHD--QRIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHP  162 (362)
T ss_dssp             TTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHC--TTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCG
T ss_pred             cCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCCh
Confidence            9999999998653   2246899999997 688888864  3456999999999999999999999999   99999999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCC-CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPET-DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE  390 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~  390 (473)
                      +|||++.++.+||+|||++...... ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+......
T Consensus       163 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~  242 (362)
T 3pg1_A          163 GNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQ  242 (362)
T ss_dssp             GGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             HHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHH
Confidence            9999999999999999999765433 2334577899999999977 6689999999999999999999999988765443


Q ss_pred             HhHhhh-cc-ccccc-----ccccccccccc---cC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          391 RNLVKW-SR-PFLAD-----DCRLSLIMDPQ---LK----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       391 ~~~~~~-~~-~~~~~-----~~~~~~~~~~~---l~----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+.. .. +...+     ...........   ..    .......+..+.+|+.+||+.||.+|||+.|+++.
T Consensus       243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          243 LNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             HHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence            332211 00 00000     00000000000   00    00122345779999999999999999999999874

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.7e-41  Score=341.16  Aligned_cols=265  Identities=15%  Similarity=0.193  Sum_probs=185.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+..... .......+.+|+.+|+.++||||+++++++....   
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  104 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKT---GLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE  104 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTT---TEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCC---CCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccc
Confidence            47899999999999999999985443   3455555543322 2334577889999999999999999999986531   


Q ss_pred             -CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          250 -SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       250 -~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                       ....++|+||+ +++|.+++..    ..+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+||
T Consensus       105 ~~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DF  176 (367)
T 2fst_X          105 EFNDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDF  176 (367)
T ss_dssp             GCCCCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC-
T ss_pred             cCCeEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeec
Confidence             25689999999 7899998843    46999999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      |+++.... ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+.......+........ ...+
T Consensus       177 G~a~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~-~~~~  254 (367)
T 2fst_X          177 GLARHTAD-EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPG-AELL  254 (367)
T ss_dssp             ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCC-HHHH
T ss_pred             cccccccc-cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC-HHHH
Confidence            99987543 2345678999999999977 6789999999999999999999999988776554433321100000 0000


Q ss_pred             ccc--------cc--ccc-CCC---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLI--------MD--PQL-KGR---FPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~--------~~--~~l-~~~---~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..+        ..  +.. ...   .....+..+.+|+.+||+.||.+|||+.++++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence            000        00  000 000   011345788999999999999999999999874

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.4e-41  Score=329.58  Aligned_cols=259  Identities=19%  Similarity=0.224  Sum_probs=187.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHh-HHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|....+   ++.+++|+............ +.++...++.++||||+++++++...  +.
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~--~~   80 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPS---GQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFRE--GD   80 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS--SS
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCC---CeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeecc--CC
Confidence            46899999999999999999986443   35566666554433333333 44455568888999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          253 RMLIYERLFHGSLDRLIYGR-SDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      .++||||++ |+|.+++... .....+++..+..++.|++.||.|||++ +   |+||||||+|||++.++.+||+|||+
T Consensus        81 ~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~  156 (290)
T 3fme_A           81 VWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGI  156 (290)
T ss_dssp             EEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC--
T ss_pred             EEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCC
Confidence            999999996 5887776431 1345799999999999999999999998 8   99999999999999999999999999


Q ss_pred             CcccCCCCc-cCcccccccCChhhh----hcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPETDI-SNSSVAAANLSVETL----ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~~~-~~~~~t~~y~aPE~~----~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +........ ....+|+.|+|||.+    .+..++.++|||||||++|||++|+.||................       
T Consensus       157 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-------  229 (290)
T 3fme_A          157 SGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEE-------  229 (290)
T ss_dssp             -------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHS-------
T ss_pred             cccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhcc-------
Confidence            987654432 334788999999996    45568899999999999999999999998643322111110000       


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHHhhh
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE--ELDRQE  456 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~--~L~~l~  456 (473)
                              ..........+.++.+|+.+||+.||.+|||+.|+++  .++...
T Consensus       230 --------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~~  274 (290)
T 3fme_A          230 --------PSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE  274 (290)
T ss_dssp             --------CCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             --------CCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccCc
Confidence                    0000012245678999999999999999999999998  444433

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=5.5e-41  Score=335.80  Aligned_cols=280  Identities=14%  Similarity=0.142  Sum_probs=195.4

Q ss_pred             HHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          168 DEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       168 ~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      .+.....++|...+.||+|+||.||+|....+   +..+++|+...  .......+.+|+..+..++||||+++++++..
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~--~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~   90 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKST---GMSVAIKKVIQ--DPRFRNRELQIMQDLAVLHHPNIVQLQSYFYT   90 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTT---CCEEEEEEEEC--CTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCC---CCEEEEEEEec--CccccHHHHHHHHHHHhcCCCCcccHHHhhhc
Confidence            45667789999999999999999999996543   34455554432  23334567788889999999999999999875


Q ss_pred             CCC-----CceEEEEEeccCCChhhhhhc-CCCCCCCCHHHHHHHHHHHHHHHHHhh--hcCCCceeecCCCCCceeeCC
Q 011995          248 DGS-----DQRMLIYERLFHGSLDRLIYG-RSDGPPIDWNTRVKIALCAAQGLTFLH--EEGPFQAMYNEFSTANIQIDK  319 (473)
Q Consensus       248 ~~~-----~~~~lV~E~~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~i~~~L~yLH--~~~~~~ivHrDlkp~NILl~~  319 (473)
                      .+.     ...++||||+++ +|.+.+.. ......+++..+..++.|++.||.|||  +.+   |+||||||+|||++.
T Consensus        91 ~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~  166 (360)
T 3e3p_A           91 LGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNE  166 (360)
T ss_dssp             ECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEET
T ss_pred             cccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeC
Confidence            321     237899999976 55444322 123456899999999999999999999  888   999999999999996


Q ss_pred             -CCcEEEeccCCCcccCCCC-ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          320 -DFSAKLSGYGCAGHIPETD-ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       320 -~~~vkl~DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                       ++.+||+|||++....... .....+|+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.........+..
T Consensus       167 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~  246 (360)
T 3e3p_A          167 ADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVR  246 (360)
T ss_dssp             TTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHH
Confidence             8999999999998775443 33457899999999996654 89999999999999999999999988766544333211


Q ss_pred             ccccc---------ccccccccccc-----cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          397 SRPFL---------ADDCRLSLIMD-----PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       397 ~~~~~---------~~~~~~~~~~~-----~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                      .....         ...........     ...........+.++.+|+.+||+.||.+|||+.|+++.  |+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  322 (360)
T 3e3p_A          247 VLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELH  322 (360)
T ss_dssp             HHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGG
T ss_pred             HcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccC
Confidence            10000         00000000000     000111223467889999999999999999999999974  44443

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=2.2e-41  Score=337.13  Aligned_cols=266  Identities=15%  Similarity=0.167  Sum_probs=203.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChh--------------hHhHHHHHHHHHhCCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQG--------------VKEFINDVNTLASLQHPN  237 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~Ei~~l~~l~Hpn  237 (473)
                      .++|...+.||+|+||.||+|..     .++.+++|+.....  ....              ...+.+|+.++.+++|||
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~  104 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-----DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEY  104 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-----TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTT
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-----CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCC
Confidence            46899999999999999999986     23455565554321  1111              178999999999999999


Q ss_pred             cccceeeeecCCCCceEEEEEeccCCChhhh------hhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCC
Q 011995          238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRL------IYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEF  310 (473)
Q Consensus       238 Iv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDl  310 (473)
                      |+++++++.+.  +..++||||+++|+|.++      +... ....+++..+..++.|++.||.|||+ .+   |+||||
T Consensus       105 i~~~~~~~~~~--~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl  178 (348)
T 2pml_X          105 CLTCEGIITNY--DEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDV  178 (348)
T ss_dssp             BCCCSEEEESS--SEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCC
T ss_pred             cceEEEEEeeC--CeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCC
Confidence            99999999876  789999999999999998      5331 25679999999999999999999999 88   999999


Q ss_pred             CCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcC-CCCC-cCCchHHHHHHHHHHcCCCCCCCCCh-
Q 011995          311 STANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERG-LLTP-KSNVWSFGIVLLELLTGRKNLDSRHP-  387 (473)
Q Consensus       311 kp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~-~~s~-~sDvwSlGvvl~elltG~~p~~~~~~-  387 (473)
                      ||+|||++.++.+||+|||++............++..|+|||.+.+. .++. ++|||||||++|||++|..||..... 
T Consensus       179 ~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  258 (348)
T 2pml_X          179 KPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL  258 (348)
T ss_dssp             CGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS
T ss_pred             ChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH
Confidence            99999999999999999999987765555666789999999999877 5665 99999999999999999999987654 


Q ss_pred             HHHHhHhhhcccccccc-cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          388 KEERNLVKWSRPFLADD-CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ......+.......... ..................++.++.+|+.+||+.||.+|||+.++++
T Consensus       259 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          259 VELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            33222221111000000 0000000000000112345688999999999999999999999987

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=7.1e-41  Score=325.99  Aligned_cols=253  Identities=18%  Similarity=0.264  Sum_probs=203.5

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--------ChhhHhHHHHHHHHHhCC-CCCccccee
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--------SQGVKEFINDVNTLASLQ-HPNLCKLLG  243 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~Ei~~l~~l~-HpnIv~l~g  243 (473)
                      ..++|...+.||+|+||.||+|....+   ++.+++|+......        ....+.+.+|+.++.++. ||||+++++
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~   91 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPT---CKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKD   91 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCc---CceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeee
Confidence            457899999999999999999996543   35566776654421        122456889999999995 999999999


Q ss_pred             eeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcE
Q 011995          244 FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSA  323 (473)
Q Consensus       244 ~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~v  323 (473)
                      ++...  ...++||||+++++|.+++..   ...+++..+..++.||+.||.|||+++   |+|+||||+|||++.++.+
T Consensus        92 ~~~~~--~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~  163 (298)
T 1phk_A           92 TYETN--TFFFLVFDLMKKGELFDYLTE---KVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNI  163 (298)
T ss_dssp             EEECS--SEEEEEEECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCE
T ss_pred             eeccC--CeEEEEEeccCCCcHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcE
Confidence            99765  789999999999999999954   246899999999999999999999999   9999999999999999999


Q ss_pred             EEeccCCCcccCCC-CccCcccccccCChhhhh------cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh
Q 011995          324 KLSGYGCAGHIPET-DISNSSVAAANLSVETLE------RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW  396 (473)
Q Consensus       324 kl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~------~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~  396 (473)
                      ||+|||++...... ......+++.|+|||++.      ...++.++|||||||++|||++|..||...........+..
T Consensus       164 kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~  243 (298)
T 1phk_A          164 KLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMS  243 (298)
T ss_dssp             EECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             EEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhc
Confidence            99999999876443 334457889999999985      34688999999999999999999999987655443322211


Q ss_pred             cccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...              .........++..+.+|+.+||+.||.+|||+.++++
T Consensus       244 ~~~--------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          244 GNY--------------QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             TCC--------------CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             CCc--------------ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            100              0000112345678999999999999999999999986

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=3.5e-41  Score=332.39  Aligned_cols=252  Identities=15%  Similarity=0.259  Sum_probs=193.4

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-------CChhhHhHHHHHHHHHhCCCCCcccceeee
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-------SSQGVKEFINDVNTLASLQHPNLCKLLGFH  245 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~  245 (473)
                      ..++|...+.||+|+||.||+|....+   .+.+++|+.....       .......+.+|+++++.++||||+++++++
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   84 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKT---CKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF   84 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCC---CcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEE
Confidence            457899999999999999999986543   3455566554321       122345688999999999999999999998


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc---
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS---  322 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~---  322 (473)
                      ...   ..++||||+++|+|.+++..   ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.   
T Consensus        85 ~~~---~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~  155 (322)
T 2ycf_A           85 DAE---DYYIVLELMEGGELFDKVVG---NKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCL  155 (322)
T ss_dssp             ESS---SEEEEEECCTTEETHHHHST---TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCC
T ss_pred             cCC---ceEEEEecCCCCcHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCe
Confidence            653   48999999999999999843   456999999999999999999999999   999999999999987654   


Q ss_pred             EEEeccCCCcccCCCCc-cCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhhc
Q 011995          323 AKLSGYGCAGHIPETDI-SNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWS  397 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~-~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~~  397 (473)
                      +||+|||++........ ....+|+.|+|||++.   ...++.++|||||||++|||++|..||........ ...+...
T Consensus       156 ~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~  235 (322)
T 2ycf_A          156 IKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG  235 (322)
T ss_dssp             EEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHT
T ss_pred             EEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhC
Confidence            99999999987654322 2346789999999974   45689999999999999999999999976433211 1111100


Q ss_pred             ccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .        ..  ..+.    ....++..+.+|+.+||..||.+|||+.++++
T Consensus       236 ~--------~~--~~~~----~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          236 K--------YN--FIPE----VWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             C--------CC--CCHH----HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             c--------cc--cCch----hhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            0        00  0000    01234578999999999999999999999985

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.5e-41  Score=331.42  Aligned_cols=251  Identities=19%  Similarity=0.263  Sum_probs=196.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||.||+|....+   .+.+++|+.... .......+.+|+.++..++||||+++++++...  +..
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~---~~~~aiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~   91 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKET---GALAAAKVIETK-SEEELEDYIVEIEILATCDHPYIVKLLGAYYHD--GKL   91 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTT---CCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCC---CcEEEEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC--CeE
Confidence            46799999999999999999997543   234445544332 334467889999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+++++|.+++...  ...+++..+..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus        92 ~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  166 (302)
T 2j7t_A           92 WIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAK  166 (302)
T ss_dssp             EEEEECCTTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCcc
Confidence            9999999999999988542  345999999999999999999999999   99999999999999999999999998754


Q ss_pred             cCCC--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          334 IPET--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ....  ......+++.|+|||.+.     +..++.++|||||||++|||++|..||...........+.....       
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-------  239 (302)
T 2j7t_A          167 NLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDP-------  239 (302)
T ss_dssp             HHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC-------
T ss_pred             ccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCC-------
Confidence            3211  123446789999999984     56689999999999999999999999987665443221111000       


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                            +.  ...+..++..+.+++.+||..||.+|||+.++++
T Consensus       240 ------~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          240 ------PT--LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             ------CC--CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             ------cc--cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence                  00  0113345678999999999999999999999986

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.5e-41  Score=341.27  Aligned_cols=270  Identities=16%  Similarity=0.193  Sum_probs=182.6

Q ss_pred             hccccc-CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFS-DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~-~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .+.|+. +++||+|+||+||+|.+.+.. ..+.+++|+...   ......+.+|+.+|+.++|||||++++++.......
T Consensus        19 ~~~y~~~g~~lG~G~~g~Vy~~~~~~~~-~~~~vaiK~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   94 (405)
T 3rgf_A           19 EDLFEYEGCKVGRGTYGHVYKAKRKDGK-DDKDYALKQIEG---TGISMSACREIALLRELKHPNVISLQKVFLSHADRK   94 (405)
T ss_dssp             HHHEECSSCCCC-----EEEEEEESSSS-CCCCEEEEECSS---SSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred             hhhhhhcCcEeeecCCeEEEEEEEccCC-CCeEEEEEEECC---CCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence            345665 468999999999999976432 234455554432   223457889999999999999999999997655578


Q ss_pred             eEEEEEeccCCChhhhhhcC------CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee----CCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGR------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI----DKDFS  322 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~------~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl----~~~~~  322 (473)
                      .+|||||+. |+|.+++...      .....+++..+..|+.||+.||.|||+++   |+||||||+||||    +.++.
T Consensus        95 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~  170 (405)
T 3rgf_A           95 VWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGR  170 (405)
T ss_dssp             EEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTC
T ss_pred             EEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCc
Confidence            999999996 5888777421      12235999999999999999999999999   9999999999999    67799


Q ss_pred             EEEeccCCCcccCCC-----CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChH--------
Q 011995          323 AKLSGYGCAGHIPET-----DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPK--------  388 (473)
Q Consensus       323 vkl~DFGla~~~~~~-----~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~--------  388 (473)
                      +||+|||+++.....     ......+|+.|+|||++.+. .++.++|||||||++|||++|++||......        
T Consensus       171 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~  250 (405)
T 3rgf_A          171 VKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYH  250 (405)
T ss_dssp             EEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCC
T ss_pred             EEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccch
Confidence            999999999876432     22445789999999999874 4899999999999999999999999765432        


Q ss_pred             -HHHh-Hhhhc-cccccccccccc----------ccccccCC--------CCCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          389 -EERN-LVKWS-RPFLADDCRLSL----------IMDPQLKG--------RFPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       389 -~~~~-~~~~~-~~~~~~~~~~~~----------~~~~~l~~--------~~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                       .... +.... .+....-..+..          ........        ......+..+.+||.+||+.||.+|||+.|
T Consensus       251 ~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e  330 (405)
T 3rgf_A          251 HDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQ  330 (405)
T ss_dssp             HHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHH
Confidence             1111 11000 000000000000          00000000        000112567889999999999999999999


Q ss_pred             HHHH
Q 011995          448 IFEE  451 (473)
Q Consensus       448 il~~  451 (473)
                      +|+.
T Consensus       331 ~L~h  334 (405)
T 3rgf_A          331 AMQD  334 (405)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9974

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=5.5e-42  Score=345.09  Aligned_cols=257  Identities=15%  Similarity=0.106  Sum_probs=182.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--ChhhHhHHHHHHHHHhC--CCCCcccce-------e
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASL--QHPNLCKLL-------G  243 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ei~~l~~l--~HpnIv~l~-------g  243 (473)
                      .+|...+.||+|+||.||+|....+   .+.+++|+......  ......+.+|+.++..+  +||||++++       +
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d  138 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVER---LEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSD  138 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCC---CceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeeh
Confidence            4688889999999999999996543   45666777665432  23456677885444444  699988754       4


Q ss_pred             eeecCCC---------------CceEEEEEeccCCChhhhhhcCCCCCCCCHHHH------HHHHHHHHHHHHHhhhcCC
Q 011995          244 FHARDGS---------------DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTR------VKIALCAAQGLTFLHEEGP  302 (473)
Q Consensus       244 ~~~~~~~---------------~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~L~yLH~~~~  302 (473)
                      ++...+.               ..+||||||++ |+|.+++...  +..+.+..+      ..++.||+.||+|||+++ 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~-  214 (371)
T 3q60_A          139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL--DFVYVFRGDEGILALHILTAQLIRLAANLQSKG-  214 (371)
T ss_dssp             EEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH--HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             heecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh--ccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC-
Confidence            4433321               34899999998 8999999653  223455566      788899999999999999 


Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCC
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRK  380 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~  380 (473)
                        ||||||||+||||+.++.+||+|||+++...... ....+|+.|+|||++.+  ..++.++|||||||++|||++|+.
T Consensus       215 --ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~-~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~  291 (371)
T 3q60_A          215 --LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG-PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL  291 (371)
T ss_dssp             --EEETTCSGGGEEECTTSCEEECCGGGEEETTCEE-EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred             --CccCcCCHHHEEECCCCCEEEEecceeeecCCCc-cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence              9999999999999999999999999998764322 24556799999999987  679999999999999999999999


Q ss_pred             CCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          381 NLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       381 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ||.........   .|...      .................++..+.+|+.+||+.||++|||+.++++
T Consensus       292 Pf~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          292 PFGLVTPGIKG---SWKRP------SLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             STTBCCTTCTT---CCCBC------CTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             CCCCcCccccc---chhhh------hhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            99876432211   01100      000001111111112356788999999999999999999999975

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2.3e-41  Score=337.60  Aligned_cols=267  Identities=17%  Similarity=0.209  Sum_probs=200.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---C
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---S  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---~  250 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+............+.+|+.+++.++||||+++++++....   .
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   86 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPT---GEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENF   86 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCC---CcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCcc
Confidence            46899999999999999999986543   34555665543334445677889999999999999999999876531   3


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||||+. |+|.+++..    ..+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+
T Consensus        87 ~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~  158 (353)
T 2b9h_A           87 NEVYIIQELMQ-TDLHRVIST----QMLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGL  158 (353)
T ss_dssp             CCEEEEECCCS-EEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEeccC-ccHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEeccc
Confidence            67899999996 699998854    35899999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC------------ccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhc
Q 011995          331 AGHIPETD------------ISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS  397 (473)
Q Consensus       331 a~~~~~~~------------~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~  397 (473)
                      +.......            .....+|+.|+|||++.+ ..++.++|||||||++|||++|..||.+.........+...
T Consensus       159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  238 (353)
T 2b9h_A          159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGI  238 (353)
T ss_dssp             CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence            98664221            123467899999998865 67899999999999999999999999887654433322110


Q ss_pred             ccccccccccccccc----------cccC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          398 RPFLADDCRLSLIMD----------PQLK----GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       398 ~~~~~~~~~~~~~~~----------~~l~----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ............+..          +...    ......++.++.+|+.+||+.||.+|||+.++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          239 IGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             HCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            000000000000000          0000    00112456788999999999999999999999873

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=2.2e-40  Score=327.68  Aligned_cols=266  Identities=16%  Similarity=0.189  Sum_probs=203.0

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC------cccceeeeec
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN------LCKLLGFHAR  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn------Iv~l~g~~~~  247 (473)
                      .++|++.+.||+|+||.||+|....  ...+.+++|+..  ........+.+|+.++..++|++      ++++++++..
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~--~~~~~vavK~~~--~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~   88 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHK--AGGRHVAVKIVK--NVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH   88 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETT--TTTEEEEEEEEC--SSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecC--CCCcEEEEEEEe--cCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence            4689999999999999999998632  123444555443  33445677889999999987654      9999999887


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC--------
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK--------  319 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~--------  319 (473)
                      .  +..++||||+ +++|.+++... ....+++..+..++.||+.||+|||+++   |+||||||+|||++.        
T Consensus        89 ~--~~~~lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~  161 (339)
T 1z57_A           89 H--GHICIVFELL-GLSTYDFIKEN-GFLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYN  161 (339)
T ss_dssp             T--TEEEEEEECC-CCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC
T ss_pred             C--CcEEEEEcCC-CCCHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccC
Confidence            6  7899999999 88999999654 2346899999999999999999999999   999999999999987        


Q ss_pred             -----------CCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChH
Q 011995          320 -----------DFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK  388 (473)
Q Consensus       320 -----------~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~  388 (473)
                                 ++.+||+|||++..... ......+|+.|+|||++.+..++.++|||||||++|||++|..||......
T Consensus       162 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  240 (339)
T 1z57_A          162 PKIKRDERTLINPDIKVVDFGSATYDDE-HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK  240 (339)
T ss_dssp             ----CEEEEESCCCEEECCCSSCEETTS-CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH
T ss_pred             CccccccccccCCCceEeeCcccccCcc-ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH
Confidence                       66899999999976543 334557899999999999989999999999999999999999999887665


Q ss_pred             HHHhHhhhcccccccc----cc---------------------ccccccc-ccCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 011995          389 EERNLVKWSRPFLADD----CR---------------------LSLIMDP-QLKGRFPLKAARTVADIALRCLQKEPSER  442 (473)
Q Consensus       389 ~~~~~~~~~~~~~~~~----~~---------------------~~~~~~~-~l~~~~~~~~~~~l~~li~~cl~~dP~~R  442 (473)
                      +....+..........    ..                     ......+ ..........+.++.+|+.+||+.||.+|
T Consensus       241 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  320 (339)
T 1z57_A          241 EHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKR  320 (339)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTS
T ss_pred             HHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccc
Confidence            5433322111000000    00                     0000000 00011234567889999999999999999


Q ss_pred             CCHHHHHHH
Q 011995          443 PTMRSIFEE  451 (473)
Q Consensus       443 Pt~~eil~~  451 (473)
                      ||+.|+++.
T Consensus       321 pt~~ell~h  329 (339)
T 1z57_A          321 ITLREALKH  329 (339)
T ss_dssp             CCHHHHTTS
T ss_pred             cCHHHHhcC
Confidence            999999864

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=2.1e-40  Score=326.85  Aligned_cols=273  Identities=18%  Similarity=0.239  Sum_probs=203.5

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhC---CCCCcccceeeeec
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASL---QHPNLCKLLGFHAR  247 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l---~HpnIv~l~g~~~~  247 (473)
                      ...++|...+.||+|+||.||+|.....  .++.+++|+..... .......+.+|+.+++.+   +||||+++++++..
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~   85 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKN--GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV   85 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTT--TTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCC--CCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeee
Confidence            3467899999999999999999986421  22344555544322 222345677888887776   89999999999862


Q ss_pred             ---CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          248 ---DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       248 ---~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                         ......++||||+. |+|.+++.... ...+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+|
T Consensus        86 ~~~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~k  160 (326)
T 1blx_A           86 SRTDRETKLTLVFEHVD-QDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIK  160 (326)
T ss_dssp             EECSSEEEEEEEEECCS-CBHHHHHHHSC-TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEE
T ss_pred             cccCCCceEEEEEecCC-CCHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEE
Confidence               12367899999997 69999986542 345899999999999999999999999   99999999999999999999


Q ss_pred             EeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc-
Q 011995          325 LSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA-  402 (473)
Q Consensus       325 l~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~-  402 (473)
                      |+|||++...... ......++..|+|||++.+..++.++|||||||++|||++|+.||.+.........+........ 
T Consensus       161 l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~  240 (326)
T 1blx_A          161 LADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE  240 (326)
T ss_dssp             ECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred             EecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCc
Confidence            9999999876433 23445778999999999999999999999999999999999999988765544332211000000 


Q ss_pred             ccc----cc-ccc---cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          403 DDC----RL-SLI---MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       403 ~~~----~~-~~~---~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...    .. ...   ........+...++..+.+|+.+||..||.+|||+.++++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  297 (326)
T 1blx_A          241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  297 (326)
T ss_dssp             GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            000    00 000   00000112234566889999999999999999999999953

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=6.9e-41  Score=326.06  Aligned_cols=253  Identities=17%  Similarity=0.293  Sum_probs=192.1

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC----
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD----  248 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~----  248 (473)
                      ..++|+..+.||+|+||.||+|....+   .+.+++|+...  .......+.+|+.+++.++||||+++++++.+.    
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALD---SRYYAIKKIRH--TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFV   78 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEE--EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCC
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCC---CeEEEEEEEec--cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchh
Confidence            457899999999999999999986543   33444554432  334567889999999999999999999987652    


Q ss_pred             -------CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC
Q 011995          249 -------GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       249 -------~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                             .....++||||+++|+|.+++...  ...+++..+..++.|++.||+|||+++   |+||||||+|||++.++
T Consensus        79 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~  153 (303)
T 1zy4_A           79 KPMTAVKKKSTLFIQMEYCENGTLYDLIHSE--NLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESR  153 (303)
T ss_dssp             C------CEEEEEEEEECCCSCBHHHHHHHS--CGGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTS
T ss_pred             hhhcccccCCceEEEEecCCCCCHHHhhhcc--ccccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCC
Confidence                   135789999999999999999643  346788999999999999999999999   99999999999999999


Q ss_pred             cEEEeccCCCcccCCC----------------CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCC
Q 011995          322 SAKLSGYGCAGHIPET----------------DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDS  384 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~----------------~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~  384 (473)
                      .+||+|||++......                ......+++.|+|||++.+. .++.++|||||||++|||++   ||..
T Consensus       154 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~  230 (303)
T 1zy4_A          154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST  230 (303)
T ss_dssp             CEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred             CEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC
Confidence            9999999999765421                12344678999999999764 68999999999999999998   5543


Q ss_pred             CChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          385 RHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...  ..........           ....+...++...+..+.+++.+||+.||.+|||+.++++.
T Consensus       231 ~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          231 GME--RVNILKKLRS-----------VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             HHH--HHHHHHHHHS-----------TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             chh--HHHHHHhccc-----------cccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence            211  1111110000           01112223345566788999999999999999999999873

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=2.4e-40  Score=333.19  Aligned_cols=265  Identities=15%  Similarity=0.193  Sum_probs=197.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC-
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD-  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~-  251 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+..... .......+.+|+.+++.++||||+++++++...+.. 
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  117 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRS---GEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR  117 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSST
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCC---CCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcc
Confidence            46899999999999999999986543   4556666655432 333457789999999999999999999998765311 


Q ss_pred             ---ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          252 ---QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       252 ---~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                         ..++||||+. ++|.+++.     ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+||
T Consensus       118 ~~~~~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Df  188 (371)
T 4exu_A          118 NFYDFYLVMPFMQ-TDLQKIMG-----MEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDF  188 (371)
T ss_dssp             TCCCCEEEEECCC-EEHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECST
T ss_pred             cceeEEEEEcccc-ccHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEec
Confidence               2499999996 68888872     24899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc---
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD---  404 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~---  404 (473)
                      |++..... ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+....+..........   
T Consensus       189 g~a~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  267 (371)
T 4exu_A          189 GLARHADA-EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ  267 (371)
T ss_dssp             TCC---------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             Cccccccc-CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHH
Confidence            99986543 3345578999999999987 678999999999999999999999998876554433221100000000   


Q ss_pred             ----ccccc---ccccccCC---CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 ----CRLSL---IMDPQLKG---RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ----~~~~~---~~~~~l~~---~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          .....   ........   .+....+..+.+|+.+||+.||.+|||+.|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence                00000   00000000   0112346889999999999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.2e-41  Score=329.23  Aligned_cols=266  Identities=18%  Similarity=0.284  Sum_probs=194.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC-----
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD-----  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~-----  248 (473)
                      .++|...+.||+|+||.||+|.....   .+.+++|+.... .....+.+.+|+.+++.++||||+++++++...     
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   85 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDC---DKRVAIKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLT   85 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTT---TEEEEEEEEECC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCC
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCC---CeEEEEEEEecC-ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccc
Confidence            46789999999999999999996543   345556655433 344567889999999999999999999987432     


Q ss_pred             -------CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CC
Q 011995          249 -------GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KD  320 (473)
Q Consensus       249 -------~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~  320 (473)
                             .....++||||+. |+|.+++..    ..+++..+..++.|++.||+|||+++   |+||||||+|||++ .+
T Consensus        86 ~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~  157 (320)
T 2i6l_A           86 DDVGSLTELNSVYIVQEYME-TDLANVLEQ----GPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTED  157 (320)
T ss_dssp             C----CCSCSEEEEEEECCS-EEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTT
T ss_pred             cccccccccCceeEEeeccC-CCHHHHhhc----CCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCC
Confidence                   2267899999997 699999842    46899999999999999999999999   99999999999997 56


Q ss_pred             CcEEEeccCCCcccCCC-----CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHh
Q 011995          321 FSAKLSGYGCAGHIPET-----DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV  394 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~-----~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~  394 (473)
                      +.+||+|||++......     ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||...........+
T Consensus       158 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~  237 (320)
T 2i6l_A          158 LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLI  237 (320)
T ss_dssp             TEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             CeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            79999999999876422     2233456889999999866 67899999999999999999999999887765443333


Q ss_pred             hhcccccccccccc------c-----cccccc-CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          395 KWSRPFLADDCRLS------L-----IMDPQL-KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       395 ~~~~~~~~~~~~~~------~-----~~~~~l-~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ....+.........      .     ...+.. ...+...++.++.+|+.+||+.||.+|||+.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          238 LESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             HHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            22111111000000      0     000000 000112356889999999999999999999999873

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=331.53  Aligned_cols=246  Identities=19%  Similarity=0.279  Sum_probs=192.3

Q ss_pred             HHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----hhhHhHHHHHHHHHhC----CCCCcccc
Q 011995          171 AAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----QGVKEFINDVNTLASL----QHPNLCKL  241 (473)
Q Consensus       171 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ei~~l~~l----~HpnIv~l  241 (473)
                      ....++|...+.||+|+||.||+|....   ..+.+++|+.......     .....+.+|+.++.++    +|+||+++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~  103 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLT---DRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRL  103 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTT---TCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEcc---CCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeE
Confidence            3456789999999999999999998543   3345556655433211     2334577899999999    89999999


Q ss_pred             eeeeecCCCCceEEEEEe-ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-C
Q 011995          242 LGFHARDGSDQRMLIYER-LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-K  319 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~  319 (473)
                      ++++...  +..++|||| +.+++|.+++...   ..+++..+..++.||+.||.|||+++   |+||||||+|||++ .
T Consensus       104 ~~~~~~~--~~~~~v~e~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~  175 (312)
T 2iwi_A          104 LDWFETQ--EGFMLVLERPLPAQDLFDYITEK---GPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLR  175 (312)
T ss_dssp             EEEC-------CEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETT
T ss_pred             EEEEecC--CeEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCC
Confidence            9998765  788999999 7899999999643   35899999999999999999999999   99999999999999 8


Q ss_pred             CCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCC-CcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          320 DFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLT-PKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s-~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      ++.+||+|||++............++..|+|||++.+..+. .++|||||||++|||++|+.||.....     ....  
T Consensus       176 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~--  248 (312)
T 2iwi_A          176 RGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE-----ILEA--  248 (312)
T ss_dssp             TTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----HHHT--
T ss_pred             CCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH-----Hhhh--
Confidence            89999999999988766666667889999999999877764 589999999999999999999975311     0100  


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                       ...++..++..+.+|+.+||+.||++|||+.++++.
T Consensus       249 -----------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          249 -----------------ELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             -----------------CCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             -----------------ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                             001233456788999999999999999999999973

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=2.5e-40  Score=320.85  Aligned_cols=253  Identities=18%  Similarity=0.254  Sum_probs=201.8

Q ss_pred             HHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          172 AACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       172 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...++|.+.+.||+|+||.||+|....+   .+.+++|+..... .......+.+|+.++++++||||+++++++...  
T Consensus        19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~---~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--   93 (287)
T 2wei_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRIT---QQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS--   93 (287)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--
T ss_pred             HHhhcceeeEEEcCCCCEEEEEEEEcCC---CcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCC--
Confidence            3457899999999999999999986533   3455566654432 334567899999999999999999999999765  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC---CcEEEec
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD---FSAKLSG  327 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~---~~vkl~D  327 (473)
                      ...++||||+++++|.+++...   ..+++..+..++.||+.||.|||+++   |+|+||||+|||++.+   +.+||+|
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~D  167 (287)
T 2wei_A           94 SSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIID  167 (287)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECS
T ss_pred             CeEEEEEEccCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEec
Confidence            7899999999999999988543   35899999999999999999999999   9999999999999754   4799999


Q ss_pred             cCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          328 YGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       328 FGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ||++....... .....+++.|+|||.+.+ .++.++||||||+++|+|++|..||...........+.....      .
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~------~  240 (287)
T 2wei_A          168 FGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKY------A  240 (287)
T ss_dssp             TTGGGTBCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC------C
T ss_pred             cCcceeecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC------C
Confidence            99998664432 234467899999999865 489999999999999999999999987665443322211100      0


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .    +  .  .....++.++.+++.+||..||.+|||+.++++
T Consensus       241 ~----~--~--~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          241 F----D--L--PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             C----C--S--GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             C----C--c--hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence            0    0  0  001234578999999999999999999999997

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.2e-40  Score=329.13  Aligned_cols=257  Identities=19%  Similarity=0.277  Sum_probs=178.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHH-HHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVN-TLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~-~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+...........++..|+. +++.++||||+++++++...  +.
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~--~~   95 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPS---GQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE--GD   95 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTT---TEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECS--SE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCC---CCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeC--Cc
Confidence            36788889999999999999996543   35566666655444445566677776 67778999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhc--CCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          253 RMLIYERLFHGSLDRLIYG--RSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~--~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      .++||||+.+ +|.+++..  ......+++..+..++.|++.||.|||+. +   |+||||||+|||++.++.+||+|||
T Consensus        96 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg  171 (327)
T 3aln_A           96 CWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFG  171 (327)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCS
T ss_pred             eEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCC
Confidence            9999999975 88777642  11245689999999999999999999998 8   9999999999999999999999999


Q ss_pred             CCcccCCCCc-cCcccccccCChhhh----hcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          330 CAGHIPETDI-SNSSVAAANLSVETL----ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       330 la~~~~~~~~-~~~~~t~~y~aPE~~----~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      ++........ ....+++.|+|||++    .+..++.++|||||||++|||++|+.||.........  ..   ...   
T Consensus       172 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~---~~~---  243 (327)
T 3aln_A          172 ISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQ--LT---QVV---  243 (327)
T ss_dssp             SSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---------C---CCC---
T ss_pred             CceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHH--HH---HHh---
Confidence            9987644322 334788999999998    4566899999999999999999999999764321110  00   000   


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                          ....+.+.......++..+.+|+.+||..||.+|||+.+|++.
T Consensus       244 ----~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          244 ----KGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             ----CSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             ----cCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence                0001111111223456789999999999999999999999873

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=4.3e-40  Score=328.89  Aligned_cols=264  Identities=16%  Similarity=0.205  Sum_probs=197.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--  250 (473)
                      .++|...+.||+|+||.||+|....+   ++.+++|+..... .......+.+|+.+++.++||||+++++++...+.  
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   99 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRS---GEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR   99 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCC---CCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccc
Confidence            46799999999999999999986543   3555666554432 23345678999999999999999999999876521  


Q ss_pred             --CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          251 --DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       251 --~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                        ...++||||+. ++|.+++.     ..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+||
T Consensus       100 ~~~~~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Df  170 (353)
T 3coi_A          100 NFYDFYLVMPFMQ-TDLQKIMG-----LKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDF  170 (353)
T ss_dssp             GCCCCEEEEECCS-EEGGGTTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECST
T ss_pred             cceeEEEEecccc-CCHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeec
Confidence              23599999996 68888772     24899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc------
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL------  401 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~------  401 (473)
                      |++...... .....+|+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.........+.......      
T Consensus       171 g~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  249 (353)
T 3coi_A          171 GLARHADAE-MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ  249 (353)
T ss_dssp             TCTTC---------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHT
T ss_pred             ccccCCCCC-ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            999865432 344578999999999977 678999999999999999999999998876544332221100000      


Q ss_pred             --cccc------ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          402 --ADDC------RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       402 --~~~~------~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        .+..      .+.......+ .......+.++.+|+.+||..||.+|||+.++++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          250 KLNDKAAKSYIQSLPQTPRKDF-TQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             TCSCHHHHHHHHTSCBCSSCCT-TTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHhhHHHHHHHHhCcCCCCccH-HHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence              0000      0000000001 11223567889999999999999999999999864

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=8e-41  Score=332.16  Aligned_cols=256  Identities=15%  Similarity=0.191  Sum_probs=172.4

Q ss_pred             HhcccccC-cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHH-HHHHhCCCCCcccceeeeecC--
Q 011995          173 ACHNFFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDV-NTLASLQHPNLCKLLGFHARD--  248 (473)
Q Consensus       173 ~~~~f~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei-~~l~~l~HpnIv~l~g~~~~~--  248 (473)
                      ..++|.+. +.||+|+||.||+|....+   .+.+++|+...  .    ....+|+ ..+..+.||||+++++++...  
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~---~~~vavK~~~~--~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~   96 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRT---GQKCALKLLYD--S----PKARQEVDHHWQASGGPHIVCILDVYENMHH   96 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEES--S----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEET
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCC---CCEEEEEEecC--c----HHHHHHHHHHHHhcCCCChHHHHHHHhhccC
Confidence            36788885 4699999999999996543   34555665542  1    2223333 345667999999999998752  


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKL  325 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl  325 (473)
                      +....++||||+++|+|.+++... ....+++..+..++.||+.||.|||+++   |+||||||+|||++.   ++.+||
T Consensus        97 ~~~~~~lv~e~~~gg~L~~~l~~~-~~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl  172 (336)
T 3fhr_A           97 GKRCLLIIMECMEGGELFSRIQER-GDQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKL  172 (336)
T ss_dssp             TEEEEEEEEECCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEE
T ss_pred             CCceEEEEEeccCCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEE
Confidence            225589999999999999999754 2356999999999999999999999999   999999999999976   456999


Q ss_pred             eccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          326 SGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       326 ~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      +|||++............+|+.|+|||++.+..++.++|||||||++|||++|..||..............   .+    
T Consensus       173 ~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~---~~----  245 (336)
T 3fhr_A          173 TDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKR---RI----  245 (336)
T ss_dssp             CCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred             eccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHH---hh----
Confidence            99999987765555666789999999999888899999999999999999999999976543221100000   00    


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ..............++.++.+|+.+||+.||.+|||+.++++.
T Consensus       246 ---~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  288 (336)
T 3fhr_A          246 ---RLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH  288 (336)
T ss_dssp             --------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ---hccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence               0000011111123456889999999999999999999999983

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=4.8e-40  Score=332.31  Aligned_cols=265  Identities=17%  Similarity=0.163  Sum_probs=200.0

Q ss_pred             HhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CC-----Ccccceeeee
Q 011995          173 ACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HP-----NLCKLLGFHA  246 (473)
Q Consensus       173 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-Hp-----nIv~l~g~~~  246 (473)
                      ..++|...+.||+|+||+||+|....+   .+.+++|+..  .......++.+|+.++..++ |+     +|+.+++++.
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~---~~~vaiK~~~--~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~  126 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVE---QEWVAIKIIK--NKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM  126 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTT---TEEEEEEEEC--SSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCC---CcEEEEEEEe--ccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec
Confidence            467899999999999999999986543   3445555543  33445577888999998885 55     4899999988


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh--cCCCceeecCCCCCceeeC--CCCc
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE--EGPFQAMYNEFSTANIQID--KDFS  322 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~--~~~~~ivHrDlkp~NILl~--~~~~  322 (473)
                      ..  +..+|||||+. |+|.+++.... ...+++..+..++.|++.||.|||.  .+   ||||||||+||||+  .++.
T Consensus       127 ~~--~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~~~---ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          127 FR--NHLCLVFEMLS-YNLYDLLRNTN-FRGVSLNLTRKFAQQMCTALLFLATPELS---IIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             ET--TEEEEEEECCC-CBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHTSTTTC---EECCCCSGGGEEESSTTSCC
T ss_pred             cC--CceEEEEecCC-CCHHHHHhhcC-cCCCCHHHHHHHHHHHHHHHHHhccCCCC---EEcCCCCcccEEEecCCCCc
Confidence            76  78999999995 59999996542 3458999999999999999999994  56   99999999999995  5788


Q ss_pred             EEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc
Q 011995          323 AKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA  402 (473)
Q Consensus       323 vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~  402 (473)
                      +||+|||++..... ......+|+.|+|||++.+..++.++|||||||++|||++|+.||.+....+....+........
T Consensus       200 ~kL~DFG~a~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~  278 (382)
T 2vx3_A          200 IKIVDFGSSCQLGQ-RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP  278 (382)
T ss_dssp             EEECCCTTCEETTC-CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCC
T ss_pred             EEEEeccCceeccc-ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            99999999987643 33456789999999999999999999999999999999999999998766554333221100000


Q ss_pred             c-----ccc----cccccc-----------------cc--------------------cCCCCCHHHHHHHHHHHHHhcc
Q 011995          403 D-----DCR----LSLIMD-----------------PQ--------------------LKGRFPLKAARTVADIALRCLQ  436 (473)
Q Consensus       403 ~-----~~~----~~~~~~-----------------~~--------------------l~~~~~~~~~~~l~~li~~cl~  436 (473)
                      .     ...    +..+.+                 +.                    -..........++.+||.+||+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~  358 (382)
T 2vx3_A          279 AHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLD  358 (382)
T ss_dssp             HHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcC
Confidence            0     000    000000                 00                    0001123345689999999999


Q ss_pred             cCCCCCCCHHHHHH
Q 011995          437 KEPSERPTMRSIFE  450 (473)
Q Consensus       437 ~dP~~RPt~~eil~  450 (473)
                      .||++|||+.|+|+
T Consensus       359 ~dP~~Rpta~e~L~  372 (382)
T 2vx3_A          359 YDPKTRIQPYYALQ  372 (382)
T ss_dssp             SCTTTSCCHHHHTT
T ss_pred             CChhhCCCHHHHhc
Confidence            99999999999986

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=5.9e-40  Score=326.95  Aligned_cols=271  Identities=13%  Similarity=0.136  Sum_probs=202.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC------cccceeeeec
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN------LCKLLGFHAR  247 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn------Iv~l~g~~~~  247 (473)
                      .++|.+.+.||+|+||.||+|......  ...+++|+.  .........+.+|+.+++.++|++      ++.+++++..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~--~~~vavK~~--~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~   93 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARG--KSQVALKII--RNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF   93 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTT--TEEEEEEEE--CSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCC--ceEEEEEEE--cccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence            468999999999999999999865432  134445544  333445677889999999997766      8888888877


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee----------
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI----------  317 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl----------  317 (473)
                      .  +..++||||+ +++|.+++... ....+++..+..++.||+.||+|||+++   |+||||||+|||+          
T Consensus        94 ~--~~~~lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~  166 (355)
T 2eu9_A           94 H--GHMCIAFELL-GKNTFEFLKEN-NFQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYN  166 (355)
T ss_dssp             T--TEEEEEEECC-CCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEEC
T ss_pred             C--CeEEEEEecc-CCChHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeccccccccc
Confidence            6  7899999999 66777777543 2346999999999999999999999999   9999999999999          


Q ss_pred             ---------CCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChH
Q 011995          318 ---------DKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPK  388 (473)
Q Consensus       318 ---------~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~  388 (473)
                               +.++.+||+|||++..... ......+|+.|+|||++.+..++.++|||||||++|||++|..||......
T Consensus       167 ~~~~~~~~~~~~~~~kl~Dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  245 (355)
T 2eu9_A          167 EHKSCEEKSVKNTSIRVADFGSATFDHE-HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR  245 (355)
T ss_dssp             CC-CCCEEEESCCCEEECCCTTCEETTS-CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ccccccccccCCCcEEEeecCccccccc-cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence                     5678999999999976533 334567899999999999999999999999999999999999999887655


Q ss_pred             HHHhHhhhcccccccc-----cccccc--------------------ccc-ccCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 011995          389 EERNLVKWSRPFLADD-----CRLSLI--------------------MDP-QLKGRFPLKAARTVADIALRCLQKEPSER  442 (473)
Q Consensus       389 ~~~~~~~~~~~~~~~~-----~~~~~~--------------------~~~-~l~~~~~~~~~~~l~~li~~cl~~dP~~R  442 (473)
                      .....+..........     ......                    ..+ ..........+.++.+|+.+||+.||.+|
T Consensus       246 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  325 (355)
T 2eu9_A          246 EHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQR  325 (355)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTS
T ss_pred             HHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhC
Confidence            4333222111000000     000000                    000 00001123456789999999999999999


Q ss_pred             CCHHHHHHH--HHhhh
Q 011995          443 PTMRSIFEE--LDRQE  456 (473)
Q Consensus       443 Pt~~eil~~--L~~l~  456 (473)
                      ||+.|+++.  +..+.
T Consensus       326 pt~~e~l~hp~f~~~~  341 (355)
T 2eu9_A          326 ITLAEALLHPFFAGLT  341 (355)
T ss_dssp             CCHHHHTTSGGGGGCC
T ss_pred             cCHHHHhcChhhcCCC
Confidence            999999853  44444

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=4.4e-40  Score=330.64  Aligned_cols=267  Identities=18%  Similarity=0.229  Sum_probs=198.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-----------CCCcccce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-----------HPNLCKLL  242 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----------HpnIv~l~  242 (473)
                      .++|...+.||+|+||.||+|....+   .+.+++|+..  ........+.+|+.++.+++           |+||++++
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~--~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~   92 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVN---NTHVAMKIVR--GDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLL   92 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEEC--SCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCC
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCC---CcEEEEEEec--CCccchhhhhHHHHHHHHhhcccccchhccccchHHHHH
Confidence            35799999999999999999986443   3445555543  33445677889999999886           89999999


Q ss_pred             eeeecCC--CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeC-
Q 011995          243 GFHARDG--SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQID-  318 (473)
Q Consensus       243 g~~~~~~--~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~-  318 (473)
                      +++...+  ....++||||+ +++|.+++.... ...+++..+..++.||+.||+|||++ +   |+||||||+|||++ 
T Consensus        93 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~  167 (373)
T 1q8y_A           93 DHFNHKGPNGVHVVMVFEVL-GENLLALIKKYE-HRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEI  167 (373)
T ss_dssp             EEEEEEETTEEEEEEEECCC-CEEHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEE
T ss_pred             HHhhccCCCCceEEEEEecC-CCCHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEec
Confidence            9987642  23789999999 889999996542 34599999999999999999999998 8   99999999999994 


Q ss_pred             -----CCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHH----
Q 011995          319 -----KDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE----  389 (473)
Q Consensus       319 -----~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~----  389 (473)
                           ..+.+||+|||++..... ......+|+.|+|||++.+..++.++|||||||++|||++|+.||.......    
T Consensus       168 ~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  246 (373)
T 1q8y_A          168 VDSPENLIQIKIADLGNACWYDE-HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD  246 (373)
T ss_dssp             EETTTTEEEEEECCCTTCEETTB-CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred             cCCCcCcceEEEcccccccccCC-CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence                 445899999999976643 3345578999999999999999999999999999999999999997654211    


Q ss_pred             --H-HhHhhhcc--------------ccccccccccccccc---------ccCCCCCHHHHHHHHHHHHHhcccCCCCCC
Q 011995          390 --E-RNLVKWSR--------------PFLADDCRLSLIMDP---------QLKGRFPLKAARTVADIALRCLQKEPSERP  443 (473)
Q Consensus       390 --~-~~~~~~~~--------------~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~l~~li~~cl~~dP~~RP  443 (473)
                        . ..++....              .+.........+...         .-...++...+.++.+||.+||+.||.+||
T Consensus       247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  326 (373)
T 1q8y_A          247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA  326 (373)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred             HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence              1 11111000              000000000000000         001134678889999999999999999999


Q ss_pred             CHHHHHHH
Q 011995          444 TMRSIFEE  451 (473)
Q Consensus       444 t~~eil~~  451 (473)
                      |+.|+++.
T Consensus       327 t~~ell~h  334 (373)
T 1q8y_A          327 DAGGLVNH  334 (373)
T ss_dssp             CHHHHHTC
T ss_pred             CHHHHhhC
Confidence            99999873

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=2.9e-41  Score=332.96  Aligned_cols=248  Identities=18%  Similarity=0.228  Sum_probs=200.3

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----hhhHhHHHHHHHHHhCC--CCCcccc
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----QGVKEFINDVNTLASLQ--HPNLCKL  241 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ei~~l~~l~--HpnIv~l  241 (473)
                      +.....++|...+.||+|+||.||+|....+   .+.+++|+.......     .....+.+|+.++.+++  |+||+++
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~  113 (320)
T 3a99_A           37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRL  113 (320)
T ss_dssp             ---CCTTTEEEEEECSSSSSCEEEEEEETTT---TEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCE
T ss_pred             ccCCccCceEEEEEEeeCCCeEEEEEEECCC---CcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEE
Confidence            3344567899999999999999999986543   355566665543211     13356788999999996  5999999


Q ss_pred             eeeeecCCCCceEEEEEeccC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-C
Q 011995          242 LGFHARDGSDQRMLIYERLFH-GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-K  319 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~  319 (473)
                      ++++...  +..++||||+.+ ++|.+++..   ...+++..+..++.||+.||+|||+.+   |+||||||+|||++ .
T Consensus       114 ~~~~~~~--~~~~lv~e~~~~~~~L~~~l~~---~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~  185 (320)
T 3a99_A          114 LDWFERP--DSFVLILERPEPVQDLFDFITE---RGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLN  185 (320)
T ss_dssp             EEEEECS--SEEEEEEECCSSEEEHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETT
T ss_pred             EEEEecC--CcEEEEEEcCCCCccHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCC
Confidence            9999876  789999999976 899999854   346899999999999999999999999   99999999999999 7


Q ss_pred             CCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          320 DFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       320 ~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      ++.+||+|||++............+|+.|+|||++.+..+ +.++|||||||++|||++|+.||.....     .... .
T Consensus       186 ~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-----~~~~-~  259 (320)
T 3a99_A          186 RGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-----IIRG-Q  259 (320)
T ss_dssp             TTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----HHHC-C
T ss_pred             CCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh-----hhcc-c
Confidence            8999999999998876666666788999999999987775 6889999999999999999999965311     1100 0


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .                  .++..++.++.+|+.+||+.||.+|||+.+|++.
T Consensus       260 ~------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          260 V------------------FFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             C------------------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             c------------------cccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0                  0122345789999999999999999999999873

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2.5e-40  Score=324.84  Aligned_cols=259  Identities=18%  Similarity=0.293  Sum_probs=197.7

Q ss_pred             CCHHHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCC--CCCcccc
Q 011995          165 FPLDEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQ--HPNLCKL  241 (473)
Q Consensus       165 ~~~~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~--HpnIv~l  241 (473)
                      +.++.+....++|...+.||+|+||.||++...+    ...+++|+..... .......+.+|+.++.+++  |+||+++
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~   93 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK----KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL   93 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTT----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCE
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCC----CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEE
Confidence            3334444456789999999999999999998543    3455666665543 3445678899999999997  5999999


Q ss_pred             eeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC
Q 011995          242 LGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF  321 (473)
Q Consensus       242 ~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~  321 (473)
                      ++++...  ...++||| +.+++|.+++...   ..+++..+..++.|++.||.|||+++   |+||||||+|||++. +
T Consensus        94 ~~~~~~~--~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~  163 (313)
T 3cek_A           94 YDYEITD--QYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-G  163 (313)
T ss_dssp             EEEEECS--SEEEEEEC-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-T
T ss_pred             EEEeecC--CEEEEEEe-cCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-C
Confidence            9999876  78999999 5688999999643   46899999999999999999999999   999999999999964 8


Q ss_pred             cEEEeccCCCcccCCCC----ccCcccccccCChhhhhc-----------CCCCCcCCchHHHHHHHHHHcCCCCCCCCC
Q 011995          322 SAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLER-----------GLLTPKSNVWSFGIVLLELLTGRKNLDSRH  386 (473)
Q Consensus       322 ~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~-----------~~~s~~sDvwSlGvvl~elltG~~p~~~~~  386 (473)
                      .+||+|||++.......    .....+++.|+|||.+.+           ..++.++|||||||++|||++|..||....
T Consensus       164 ~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  243 (313)
T 3cek_A          164 MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  243 (313)
T ss_dssp             EEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             eEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH
Confidence            99999999998764332    123467899999999875           468889999999999999999999997654


Q ss_pred             hHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 011995          387 PKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL  452 (473)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  452 (473)
                      ...... .              .+.++.....++...+.++.+|+.+||..||.+||++.++++.-
T Consensus       244 ~~~~~~-~--------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~  294 (313)
T 3cek_A          244 NQISKL-H--------------AIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP  294 (313)
T ss_dssp             SHHHHH-H--------------HHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             HHHHHH-H--------------HHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence            322110 0              01111111222333457899999999999999999999999753

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=6.9e-40  Score=348.39  Aligned_cols=275  Identities=17%  Similarity=0.189  Sum_probs=206.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeec----CC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR----DG  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~----~~  249 (473)
                      .++|++.+.||+|+||.||+|....   .+..+++|+............+.+|++++.+++||||+++++++..    ..
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~---tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~   89 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQD---TGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAP   89 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTT---TTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCT
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECC---CCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccC
Confidence            3689999999999999999998543   3344555554443445556789999999999999999999998754    12


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCc---EEEe
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFS---AKLS  326 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~---vkl~  326 (473)
                      .+..++||||+++|+|.+++........+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.   +||+
T Consensus        90 ~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~  166 (676)
T 3qa8_A           90 NDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKII  166 (676)
T ss_dssp             TSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred             CCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEc
Confidence            3678999999999999999976554557999999999999999999999999   999999999999987654   9999


Q ss_pred             ccCCCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          327 GYGCAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       327 DFGla~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      |||++....... .....+++.|+|||.+.+..++.++|||||||++|||++|..||.......     .|.........
T Consensus       167 DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~-----~~~~~i~~~~~  241 (676)
T 3qa8_A          167 DLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPV-----QWHGKVREKSN  241 (676)
T ss_dssp             SCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHH-----HSSTTCC----
T ss_pred             ccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchh-----hhhhhhhcccc
Confidence            999998765443 344578999999999999999999999999999999999999997653322     11111100000


Q ss_pred             -----------ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHH-----HHHHHHhhhccc
Q 011995          406 -----------RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS-----IFEELDRQESRK  459 (473)
Q Consensus       406 -----------~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~e-----il~~L~~l~~~~  459 (473)
                                 .............+....+..+.+|+.+||..||.+|||+.+     +.+.++.+.+..
T Consensus       242 ~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~k  311 (676)
T 3qa8_A          242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSLK  311 (676)
T ss_dssp             --CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCCC
T ss_pred             hhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhcc
Confidence                       000000011122345568899999999999999999999988     667777766544

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=319.58  Aligned_cols=251  Identities=19%  Similarity=0.291  Sum_probs=177.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHh-HHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      .++|+..+.||+|+||.||+|....+   .+.+++|+...........+ +.++..++..++||||+++++++...  +.
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~   98 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKT---GHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN--TD   98 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTT---CCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS--SE
T ss_pred             hccccccceeeecCCeeEEEEEEecC---CeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC--Cc
Confidence            56889999999999999999997543   34556666654433333333 44455678888999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .++||||+ ++.+..++..  ....+++..+..++.|++.||.|||++ +   |+|+||||+|||++.++.+||+|||++
T Consensus        99 ~~lv~e~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~  172 (318)
T 2dyl_A           99 VFIAMELM-GTCAEKLKKR--MQGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGIS  172 (318)
T ss_dssp             EEEEECCC-SEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEEecc-CCcHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCc
Confidence            99999999 5555555432  234689999999999999999999995 8   999999999999999999999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH-HhHhhhcccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADD  404 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~-~~~~~~~~~~~~~~  404 (473)
                      ....... .....+++.|+|||++.     ...++.++|||||||++|||++|+.||........ ...+....      
T Consensus       173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~------  246 (318)
T 2dyl_A          173 GRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEE------  246 (318)
T ss_dssp             --------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSC------
T ss_pred             hhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccC------
Confidence            7664332 23457889999999994     45688999999999999999999999986433221 11111000      


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                             .+.+.  ....++.++.+|+.+||+.||.+|||+.+|++
T Consensus       247 -------~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          247 -------PPLLP--GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             -------CCCCC--SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             -------CCCCC--ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence                   00000  01234578999999999999999999999987

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=3.1e-39  Score=331.81  Aligned_cols=248  Identities=16%  Similarity=0.226  Sum_probs=182.6

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCceE
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      .|...+.||+|+||+||.+...+    ++.+++|+...    ...+.+.+|+.+|.++ +|||||++++++.+.  ...+
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~----g~~vAvK~~~~----~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~--~~~~   85 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQ----GRPVAVKRMLI----DFCDIALMEIKLLTESDDHPNVIRYYCSETTD--RFLY   85 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESS----SSEEEEEEEEG----GGHHHHHHHHHHHHHHTTSTTBCCEEEEEECS--SEEE
T ss_pred             eeeccCeEeeCCCeEEEEEEEEC----CeEEEEEEEcH----HHHHHHHHHHHHHHhccCCCCcCeEEEEEecC--CeEE
Confidence            45566889999999997654332    34555655442    2345678999999986 899999999988765  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCC----CCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC----------
Q 011995          255 LIYERLFHGSLDRLIYGRSDGP----PIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD----------  320 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~----~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~----------  320 (473)
                      |||||+. |+|.+++.......    ...+..+..++.||+.||+|||+++   |+||||||+|||++.+          
T Consensus        86 lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~  161 (434)
T 2rio_A           86 IALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTG  161 (434)
T ss_dssp             EEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTC
T ss_pred             EEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccC
Confidence            9999995 69999996542211    1133356789999999999999999   9999999999999654          


Q ss_pred             ---CcEEEeccCCCcccCCCC------ccCcccccccCChhhhhc-------CCCCCcCCchHHHHHHHHHHc-CCCCCC
Q 011995          321 ---FSAKLSGYGCAGHIPETD------ISNSSVAAANLSVETLER-------GLLTPKSNVWSFGIVLLELLT-GRKNLD  383 (473)
Q Consensus       321 ---~~vkl~DFGla~~~~~~~------~~~~~~t~~y~aPE~~~~-------~~~s~~sDvwSlGvvl~ellt-G~~p~~  383 (473)
                         +.+||+|||++.......      .....+|+.|+|||++.+       ..++.++|||||||++|||++ |..||.
T Consensus       162 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~  241 (434)
T 2rio_A          162 AENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFG  241 (434)
T ss_dssp             CCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             CCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCC
Confidence               489999999998765432      224478999999999976       568999999999999999999 999997


Q ss_pred             CCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          384 SRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ....... .+.....       ..     +.........++.++.+||.+||+.||.+|||+.+|++
T Consensus       242 ~~~~~~~-~i~~~~~-------~~-----~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          242 DKYSRES-NIIRGIF-------SL-----DEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             STTTHHH-HHHHTCC-------CC-----CCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CchhhHH-HHhcCCC-------Cc-----ccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            6543332 1111110       00     01111124567889999999999999999999999986

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=328.19  Aligned_cols=246  Identities=14%  Similarity=0.198  Sum_probs=181.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      ..+|...+.||+|+||+||.....+    .+.+++|+..  .  .....+.+|+.+|+.+ +|||||++++++.+.  ..
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~----~~~vAvK~~~--~--~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~--~~   92 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFD----NRDVAVKRIL--P--ECFSFADREVQLLRESDEHPNVIRYFCTEKDR--QF   92 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESS----SSEEEEEEEC--T--TTEEECHHHHHHHHHSCCCTTBCCEEEEEEET--TE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeC----CeEEEEEEEC--H--HHHHHHHHHHHHHHhccCCCCcCeEEEEEecC--CE
Confidence            4578889999999999955433222    2334454442  2  2234577899999999 899999999998766  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-----CCcEEEec
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-----DFSAKLSG  327 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-----~~~vkl~D  327 (473)
                      .||||||+. |+|.+++....  ..+.+..+..++.||+.||.|||+++   |+||||||+||||+.     ...+||+|
T Consensus        93 ~~lv~E~~~-g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~D  166 (432)
T 3p23_A           93 QYIAIELCA-ATLQEYVEQKD--FAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISD  166 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSS--CCCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECC
T ss_pred             EEEEEECCC-CCHHHHHHhcC--CCccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEec
Confidence            999999995 69999996532  33455567799999999999999999   999999999999953     34688999


Q ss_pred             cCCCcccCCC-----CccCcccccccCChhhhh---cCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcc
Q 011995          328 YGCAGHIPET-----DISNSSVAAANLSVETLE---RGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       328 FGla~~~~~~-----~~~~~~~t~~y~aPE~~~---~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~  398 (473)
                      ||++......     ......+|+.|+|||++.   ...++.++|||||||++|||++ |..||............... 
T Consensus       167 FG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~-  245 (432)
T 3p23_A          167 FGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGAC-  245 (432)
T ss_dssp             TTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCC-
T ss_pred             ccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccC-
Confidence            9999876432     223457899999999997   4567889999999999999999 99999765433322111100 


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                             ...     ..  ......+..+.+||.+||+.||.+|||+.+|++
T Consensus       246 -------~~~-----~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          246 -------SLD-----CL--HPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             -------CCT-----TS--CTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -------Ccc-----cc--CccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence                   000     00  112355677899999999999999999999984

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=7.6e-39  Score=310.76  Aligned_cols=235  Identities=12%  Similarity=0.103  Sum_probs=181.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||.||+|.....   .+.+++|+......  ....+.+.+|+.++..++||||+++++++...  +.
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~---~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~--~~  105 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTAL---DRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR--AG  105 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTT---TEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET--TE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCC---CceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC--Cc
Confidence            5799999999999999999996543   35556666554322  33457899999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|+||||+++++|.+++..   +  .....+..|+.|++.||+|||+++   |+||||||+|||++.++.+||+++|   
T Consensus       106 ~~lv~e~~~g~~L~~~l~~---~--~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~---  174 (286)
T 3uqc_A          106 GLVVAEWIRGGSLQEVADT---S--PSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPA---  174 (286)
T ss_dssp             EEEEEECCCEEEHHHHHTT---C--CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCC---
T ss_pred             EEEEEEecCCCCHHHHHhc---C--CChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEecc---
Confidence            9999999999999999932   1  355678899999999999999999   9999999999999999999998554   


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                                     |++       .++.++|||||||++|||++|+.||.+........   .........        
T Consensus       175 ---------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~---~~~~~~~~~--------  221 (286)
T 3uqc_A          175 ---------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA---PAERDTAGQ--------  221 (286)
T ss_dssp             ---------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE---ECCBCTTSC--------
T ss_pred             ---------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH---HHHHHhccC--------
Confidence                           333       36889999999999999999999998754322110   000000000        


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      ......+...++.++.+|+.+||+.||.+| |+.|+++.|+++....
T Consensus       222 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~  267 (286)
T 3uqc_A          222 PIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA  267 (286)
T ss_dssp             BCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred             CCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence            000001123456789999999999999999 9999999999877543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.9e-39  Score=347.27  Aligned_cols=244  Identities=17%  Similarity=0.220  Sum_probs=191.6

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC--
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD--  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~--  251 (473)
                      .++|.+.+.||+|+||.||+|.....  ..+.+++|+............+.+|+.++.+++|||||++++++...+..  
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~  156 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNV--NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD  156 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGG--TTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCC--CCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence            37899999999999999999986431  23444555443333445567789999999999999999999999875321  


Q ss_pred             -ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          252 -QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       252 -~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                       ..||||||+++++|.+++..     .+++..+..|+.||+.||.|||+++   ||||||||+|||++.+ .+||+|||+
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~  227 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGA  227 (681)
T ss_dssp             EEEEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTT
T ss_pred             ceeEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEeccc
Confidence             16999999999999987732     6999999999999999999999999   9999999999999986 899999999


Q ss_pred             CcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          331 AGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       331 a~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      +......  ....+|+.|+|||++.++. +.++|||||||++|||++|.+||.+.....           +.        
T Consensus       228 a~~~~~~--~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~-----------~~--------  285 (681)
T 2pzi_A          228 VSRINSF--GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDG-----------LP--------  285 (681)
T ss_dssp             CEETTCC--SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSS-----------CC--------
T ss_pred             chhcccC--CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccccc-----------cc--------
Confidence            9876443  4557899999999997764 889999999999999999998876421000           00        


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERP-TMRSIFEELDRQ  455 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~l  455 (473)
                           ........+..+.+||.+||+.||.+|| +++++.+.|..+
T Consensus       286 -----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  326 (681)
T 2pzi_A          286 -----EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV  326 (681)
T ss_dssp             -----TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             -----ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence                 0000123457789999999999999999 577777777754

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=7.1e-38  Score=305.56  Aligned_cols=231  Identities=17%  Similarity=0.247  Sum_probs=177.4

Q ss_pred             hcccccC-cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHH-HhCCCCCcccceeeeec--CC
Q 011995          174 CHNFFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTL-ASLQHPNLCKLLGFHAR--DG  249 (473)
Q Consensus       174 ~~~f~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l-~~l~HpnIv~l~g~~~~--~~  249 (473)
                      .++|... +.||+|+||.||+|....+   .+.+++|+...      ...+.+|+.++ +.++||||+++++++..  .+
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~---~~~vaiK~~~~------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~   86 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRT---QEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAG   86 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCC---CcEEEEEEecc------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCC
Confidence            4567776 7899999999999986443   44556665532      35677899988 55699999999999865  22


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEEe
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKLS  326 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl~  326 (473)
                      ....++||||+++|+|.+++... ....+++..+..++.|++.||.|||+++   |+||||||+|||++.   ++.+||+
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~  162 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLT  162 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             CceEEEEEeecCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEe
Confidence            36789999999999999999764 3346999999999999999999999999   999999999999998   7899999


Q ss_pred             ccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          327 GYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       327 DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      |||++....                    +..++.++|||||||++|||++|..||............            
T Consensus       163 Dfg~a~~~~--------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~------------  210 (299)
T 3m2w_A          163 DFGFAKETT--------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM------------  210 (299)
T ss_dssp             CCTTCEECT--------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCS------------
T ss_pred             ccccccccc--------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHH------------
Confidence            999986542                    234678899999999999999999999765432211000            


Q ss_pred             cccccccccCCCCC----HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          407 LSLIMDPQLKGRFP----LKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       407 ~~~~~~~~l~~~~~----~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ...+....  ..++    ..++.++.+|+.+||+.||.+|||+.|+++.
T Consensus       211 ~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          211 KTRIRMGQ--YEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             CCSSCTTC--CSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHhhcc--ccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            00000000  0111    2356889999999999999999999999974

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-38  Score=325.60  Aligned_cols=246  Identities=15%  Similarity=0.154  Sum_probs=180.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCC-CCccccee-------
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQH-PNLCKLLG-------  243 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~H-pnIv~l~g-------  243 (473)
                      +.+|...++||+|+||+||+|....+   +..+++|+.....  .....+.+.+|+.++..++| .|...+..       
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~---g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~  153 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQET---GESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP  153 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCC
T ss_pred             ceeEEEecccccCCCEEEEEEEecCC---CCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccc
Confidence            34677889999999999999996543   3466677666432  23346789999999999987 32221111       


Q ss_pred             --e------------eecCC---CCceEEEEEeccCCChhhhhhc----CCCCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 011995          244 --F------------HARDG---SDQRMLIYERLFHGSLDRLIYG----RSDGPPIDWNTRVKIALCAAQGLTFLHEEGP  302 (473)
Q Consensus       244 --~------------~~~~~---~~~~~lV~E~~~~gsL~~~l~~----~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~  302 (473)
                        .            +....   ...++++|+++ +++|.+++..    ......+++..+..++.||+.||+|||+++ 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-  231 (413)
T 3dzo_A          154 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG-  231 (413)
T ss_dssp             CEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC-
Confidence              1            11110   13467777765 6899988841    122446889999999999999999999999 


Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhh----------hcCCCCCcCCchHHHHHH
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETL----------ERGLLTPKSNVWSFGIVL  372 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~----------~~~~~s~~sDvwSlGvvl  372 (473)
                        ||||||||+||||+.++.+||+|||+++..... .....+ +.|+|||++          .+..++.++|||||||++
T Consensus       232 --iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil  307 (413)
T 3dzo_A          232 --LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAI  307 (413)
T ss_dssp             --EECSCCCGGGEEECTTCCEEECCGGGCEETTEE-ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHH
T ss_pred             --cccCCcccceEEEecCCeEEEEeccceeecCCc-cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHH
Confidence              999999999999999999999999998765433 344566 999999999          444578899999999999


Q ss_pred             HHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          373 LELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       373 ~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      |||++|+.||..........                .+...      ...++.++.+||.+||+.||.+||++.++++
T Consensus       308 ~elltg~~Pf~~~~~~~~~~----------------~~~~~------~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          308 YWIWCADLPNTDDAALGGSE----------------WIFRS------CKNIPQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             HHHHHSSCCCCTTGGGSCSG----------------GGGSS------CCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHCCCCCCCcchhhhHH----------------HHHhh------cccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            99999999997654322111                00000      1123478999999999999999999877754

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=7.2e-38  Score=310.60  Aligned_cols=245  Identities=9%  Similarity=0.036  Sum_probs=181.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-------CChhhHhHHHHHHHHHhCC---------CCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-------SSQGVKEFINDVNTLASLQ---------HPN  237 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Ei~~l~~l~---------Hpn  237 (473)
                      .++|+..+.||+|+||.||+|+..     ++.+++|+.....       .....+.+.+|+.+++.++         |||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~-----~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~n   93 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIAD-----HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEG   93 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEET-----TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCC
T ss_pred             cccchheeeecccCceEEEEEEeC-----CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCc
Confidence            467899999999999999999862     2556677666542       2233477899999999886         555


Q ss_pred             ccccee-----------------eeecC-----------CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHH
Q 011995          238 LCKLLG-----------------FHARD-----------GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALC  289 (473)
Q Consensus       238 Iv~l~g-----------------~~~~~-----------~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~  289 (473)
                      ||++++                 ++.+.           +....||||||+++|++.+.+..    ..+++..+..++.|
T Consensus        94 iv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~q  169 (336)
T 2vuw_A           94 FIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQ  169 (336)
T ss_dssp             BCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHH
T ss_pred             hhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHH
Confidence            555554                 43320           13789999999999977776632    45899999999999


Q ss_pred             HHHHHHHhh-hcCCCceeecCCCCCceeeCCCC--------------------cEEEeccCCCcccCCCCccCccccccc
Q 011995          290 AAQGLTFLH-EEGPFQAMYNEFSTANIQIDKDF--------------------SAKLSGYGCAGHIPETDISNSSVAAAN  348 (473)
Q Consensus       290 i~~~L~yLH-~~~~~~ivHrDlkp~NILl~~~~--------------------~vkl~DFGla~~~~~~~~~~~~~t~~y  348 (473)
                      |+.||+||| +++   ||||||||+||||+.++                    .+||+|||+++.....   ...+|+.|
T Consensus       170 i~~aL~~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~---~~~gt~~y  243 (336)
T 2vuw_A          170 LTASLAVAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG---IVVFCDVS  243 (336)
T ss_dssp             HHHHHHHHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT---EEECCCCT
T ss_pred             HHHHHHHHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC---cEEEeecc
Confidence            999999999 899   99999999999999887                    8999999999876432   44789999


Q ss_pred             CChhhhhcCCCCCcCCchHHHHH-HHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHH
Q 011995          349 LSVETLERGLLTPKSNVWSFGIV-LLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTV  427 (473)
Q Consensus       349 ~aPE~~~~~~~s~~sDvwSlGvv-l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  427 (473)
                      ||||++.+.. +.++|||||+++ .+++++|..||......  .......   . .    ...............++.++
T Consensus       244 ~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~--~~~~~~~---~-~----~~~~~~~~~~~~~~~~s~~~  312 (336)
T 2vuw_A          244 MDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWL--HYLTDKM---L-K----QMTFKTKCNTPAMKQIKRKI  312 (336)
T ss_dssp             TCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHH--HHHHHHH---H-H----TCCCSSCCCSHHHHHHHHHH
T ss_pred             cChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhh--hHHHHhh---h-h----hhccCcccchhhhhhcCHHH
Confidence            9999998766 889999998777 77888999988431000  0000000   0 0    00000011111245788999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHH
Q 011995          428 ADIALRCLQKEPSERPTMRSIF  449 (473)
Q Consensus       428 ~~li~~cl~~dP~~RPt~~eil  449 (473)
                      .+||.+||++|     |+.|++
T Consensus       313 ~dli~~~L~~d-----sa~e~l  329 (336)
T 2vuw_A          313 QEFHRTMLNFS-----SATDLL  329 (336)
T ss_dssp             HHHHHHGGGSS-----SHHHHH
T ss_pred             HHHHHHHhccC-----CHHHHH
Confidence            99999999977     999988

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.96  E-value=2.4e-31  Score=281.35  Aligned_cols=184  Identities=16%  Similarity=0.115  Sum_probs=125.1

Q ss_pred             eeecCCceEEEEEECCCCeeeeEEEEEEEecCC---------CChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCc
Q 011995          183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNP---------SSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       183 lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++.|++|.+..++   ....+..+++|++....         .....++|.+|+++|+++ .|+||+++++++.++  ..
T Consensus       242 ~~~~~~~~h~~~r---r~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~--~~  316 (569)
T 4azs_A          242 PYAGAGLAHKRSR---RYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENA--QS  316 (569)
T ss_dssp             -C--------CCE---EEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECS--SE
T ss_pred             cccCCcccccccc---cccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEEC--CE
Confidence            3445555444332   22234455666665432         123346799999999999 799999999999876  88


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .||||||++|++|.++|..   ..+++..   +|+.||+.||+|||++|   ||||||||+||||+.+|.+||+|||+|+
T Consensus       317 ~yLVMEyv~G~~L~d~i~~---~~~l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr  387 (569)
T 4azs_A          317 GWLVMEKLPGRLLSDMLAA---GEEIDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIV  387 (569)
T ss_dssp             EEEEEECCCSEEHHHHHHT---TCCCCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEE
T ss_pred             EEEEEecCCCCcHHHHHHh---CCCCCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCe
Confidence            9999999999999999954   3456654   58899999999999999   9999999999999999999999999998


Q ss_pred             ccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCC
Q 011995          333 HIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKN  381 (473)
Q Consensus       333 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p  381 (473)
                      .....  ...+.+||+.|||||++.+ .+..++|+||+|+++++|.++..+
T Consensus       388 ~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          388 TTPQDCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             SCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             eCCCCCccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence            76543  2345588999999999865 467889999999998887665443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.94  E-value=3.4e-28  Score=255.72  Aligned_cols=183  Identities=14%  Similarity=0.103  Sum_probs=139.1

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-C------hhhHhHHHHHHHHHhCCCCCcccceeeeecCCC
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-S------QGVKEFINDVNTLASLQHPNLCKLLGFHARDGS  250 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~  250 (473)
                      ...+.||+|+||.||+|.+.+...     +++....... .      ...+.+.+|+++|++++||||+++..++...  
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~-----~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~--  411 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDV-----IIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDL--  411 (540)
T ss_dssp             ---------CCEEEEEEECSSCEE-----EEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEET--
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeE-----EEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeC--
Confidence            345789999999999996544322     2333222211 1      1135589999999999999999666666554  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      +..||||||+++++|.+++..           +..++.|++.||.|||+++   |+||||||+|||++.  .+||+|||+
T Consensus       412 ~~~~lVmE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGl  475 (540)
T 3en9_A          412 DNKRIMMSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGL  475 (540)
T ss_dssp             TTTEEEEECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTT
T ss_pred             CccEEEEECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECcc
Confidence            667999999999999999843           5689999999999999999   999999999999999  999999999


Q ss_pred             CcccCCCCc---------cCcccccccCChhhhhc--CCCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          331 AGHIPETDI---------SNSSVAAANLSVETLER--GLLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       331 a~~~~~~~~---------~~~~~t~~y~aPE~~~~--~~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      ++.......         ....+|+.|||||++..  ..|+..+|+|+..+-.++.+.++.+|.
T Consensus       476 a~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          476 GKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             CEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             CEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            988754321         24578999999999977  557888999999999999888877663

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.89  E-value=2.2e-23  Score=201.30  Aligned_cols=163  Identities=12%  Similarity=0.103  Sum_probs=122.9

Q ss_pred             HHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----------------hhhHhHHHHHHHHHh
Q 011995          170 VAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----------------QGVKEFINDVNTLAS  232 (473)
Q Consensus       170 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Ei~~l~~  232 (473)
                      +......|...+.||+|+||.||+|...    .+..+++|+.+.....                 .....+.+|+.+|.+
T Consensus        85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~----~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~  160 (282)
T 1zar_A           85 LVRSGKVDAIGKLMGEGKESAVFNCYSE----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK  160 (282)
T ss_dssp             HHHTTSCSEEEEEEEECSSEEEEEEEET----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEecCEeccCCCceEEEEEeC----CCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence            3344455677799999999999999972    2345556665432110                 134668999999999


Q ss_pred             CCCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCC
Q 011995          233 LQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST  312 (473)
Q Consensus       233 l~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp  312 (473)
                      ++  | +++.+++..   +..|+||||+++|+|.+ +..         .....++.|++.||.|||+.+   |+||||||
T Consensus       161 l~--~-~~v~~~~~~---~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp  221 (282)
T 1zar_A          161 LQ--G-LAVPKVYAW---EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHRG---IVHGDLSQ  221 (282)
T ss_dssp             TT--T-SSSCCEEEE---ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHTT---EECSCCST
T ss_pred             cc--C-CCcCeEEec---cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHCC---CEeCCCCH
Confidence            99  5 777776543   45699999999999988 411         224579999999999999999   99999999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhc----------CCCCCcCCchH
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER----------GLLTPKSNVWS  367 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~----------~~~s~~sDvwS  367 (473)
                      +|||++ ++.+||+|||+++.           +..|+|||++..          ..|+..+|+|.
T Consensus       222 ~NILl~-~~~vkl~DFG~a~~-----------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          222 YNVLVS-EEGIWIIDFPQSVE-----------VGEEGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             TSEEEE-TTEEEECCCTTCEE-----------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHEEEE-CCcEEEEECCCCeE-----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence            999999 99999999999864           345788998754          34556666664

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.78  E-value=5.3e-19  Score=168.32  Aligned_cols=138  Identities=14%  Similarity=0.048  Sum_probs=101.5

Q ss_pred             cccCcceeecCCceEEEEEECCCCeeeeE--EEEEEEecCCCC-----------------------hhhHhHHHHHHHHH
Q 011995          177 FFSDRCISEGLSSVMYRASFGDDASTSKK--FEATVTRLNPSS-----------------------QGVKEFINDVNTLA  231 (473)
Q Consensus       177 f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------------~~~~~~~~Ei~~l~  231 (473)
                      |...+.||+|+||.||+|....   .+..  +++|+.+.....                       .....+.+|+.+|.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~---~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~  125 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVF---DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE  125 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEE---TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcC---CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence            5677899999999999998621   2234  566664432110                       01135789999999


Q ss_pred             hCCCCCc--ccceeeeecCCCCceEEEEEeccC-C----ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhh-hcCCC
Q 011995          232 SLQHPNL--CKLLGFHARDGSDQRMLIYERLFH-G----SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH-EEGPF  303 (473)
Q Consensus       232 ~l~HpnI--v~l~g~~~~~~~~~~~lV~E~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH-~~~~~  303 (473)
                      ++.|+++  ..++++      ...+|||||+.+ |    +|.++...      .++..+..++.|++.+|.||| +.+  
T Consensus       126 ~l~~~~i~~p~~~~~------~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~g--  191 (258)
T 1zth_A          126 RAKEAGVSVPQPYTY------MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEAE--  191 (258)
T ss_dssp             HHHHTTCCCCCEEEE------ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTSC--
T ss_pred             HHHhCCCCCCeEEEc------CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHCC--
Confidence            9988865  333321      356899999942 4    66665421      224567889999999999999 888  


Q ss_pred             ceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       304 ~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                       ||||||||+|||++.  .++|+|||++...
T Consensus       192 -ivHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          192 -LVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             -EECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             -EEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence             999999999999998  9999999999754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.62  E-value=3.6e-16  Score=155.54  Aligned_cols=138  Identities=10%  Similarity=0.077  Sum_probs=93.8

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-------------ChhhHhH--------HHHHHHHHhCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-------------SQGVKEF--------INDVNTLASLQ  234 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--------~~Ei~~l~~l~  234 (473)
                      -|.+.+.||.|+||.||+|...+    ++.+|+|+.+....             .......        .+|...|.++.
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~----G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~  171 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEK----GKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALY  171 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTT----CCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEeeeCCceEEEEEECCC----CCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            38899999999999999998543    45567776553210             0001112        24555555554


Q ss_pred             CCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCc
Q 011995          235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTAN  314 (473)
Q Consensus       235 HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~N  314 (473)
                      +.++.-..-+..    ...+|||||+++++|.++..       .  .....++.|++.+|.|||..|   ||||||||.|
T Consensus       172 ~~gv~vp~p~~~----~~~~LVME~i~G~~L~~l~~-------~--~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~N  235 (397)
T 4gyi_A          172 EEGFPVPEPIAQ----SRHTIVMSLVDALPMRQVSS-------V--PDPASLYADLIALILRLAKHG---LIHGDFNEFN  235 (397)
T ss_dssp             HTTCSCCCEEEE----ETTEEEEECCSCEEGGGCCC-------C--SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTS
T ss_pred             hcCCCCCeeeec----cCceEEEEecCCccHhhhcc-------c--HHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHH
Confidence            433321111111    22479999999988876541       1  124578899999999999999   9999999999


Q ss_pred             eeeCCCC----------cEEEeccCCCcc
Q 011995          315 IQIDKDF----------SAKLSGYGCAGH  333 (473)
Q Consensus       315 ILl~~~~----------~vkl~DFGla~~  333 (473)
                      ||+++++          .+.|+||+-+..
T Consensus       236 ILl~~dgd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          236 ILIREEKDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             EEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred             EEEeCCCCcccccccccceEEEEeCCccc
Confidence            9998776          389999986543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.30  E-value=8.3e-12  Score=118.35  Aligned_cols=148  Identities=11%  Similarity=0.062  Sum_probs=108.2

Q ss_pred             HHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeec
Q 011995          169 EVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHAR  247 (473)
Q Consensus       169 el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~  247 (473)
                      .+.....+|.....++.|+++.||++...+     ..+.+|+..... ......+.+|+++++.+. +..+.++++++..
T Consensus         8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~~~-----~~~vlK~~~~~~-~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~   81 (263)
T 3tm0_A            8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGEN-----ENLYLKMTDSRY-KGTTYDVEREKDMMLWLEGKLPVPKVLHFERH   81 (263)
T ss_dssp             HHHHHHTTSEEEECCSCCSSSEEEEEECSS-----CEEEEEEECGGG-TTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE
T ss_pred             HHHHHhccceeEeeccCCCCCeEEEEECCC-----CcEEEEeCCccc-CCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            345566788888889989999999997332     233344443211 122346889999999984 6677889888876


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc---------------------------
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE---------------------------  300 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~---------------------------  300 (473)
                      .  +..|+||||++|.+|.+.+..        ......++.+++.+|..||+.                           
T Consensus        82 ~--~~~~lv~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (263)
T 3tm0_A           82 D--GWSNLLMSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLA  151 (263)
T ss_dssp             T--TEEEEEEECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCS
T ss_pred             C--CceEEEEEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccc
Confidence            5  678999999999999876411        122347888999999999981                           


Q ss_pred             -----------------------------CCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          301 -----------------------------GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       301 -----------------------------~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                                                   .++.++|+|+++.|||++.+..+.|+||+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          152 DVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                         11349999999999999876667799998764

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.13  E-value=1.1e-10  Score=109.90  Aligned_cols=139  Identities=11%  Similarity=0.074  Sum_probs=93.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC--cccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN--LCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn--Iv~l~g~~~~~~~~  251 (473)
                      ..+|....+.+.|..+.||++...++.    .+.+|+...  .  ....+.+|+.+++.+.+.+  +.+++++....  +
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~----~~vlK~~~~--~--~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~--~   88 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSAQGRP----VLFVKTDLS--G--ALNELQDEAARLSWLATTGVPCAAVLDVVTEA--G   88 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECTTSC----CEEEEEECS--C--TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS--S
T ss_pred             cCCCceEecccCCCCceEEEEecCCCC----eEEEEeCCc--c--cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC--C
Confidence            334444333345666999999754332    233444322  1  3356889999999986545  44577776554  5


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC------------------------------
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG------------------------------  301 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~------------------------------  301 (473)
                      ..++||||++|.+|.  ..  .    ..   ...++.+++..|..||...                              
T Consensus        89 ~~~~v~e~i~G~~l~--~~--~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (264)
T 1nd4_A           89 RDWLLLGEVPGQDLL--SS--H----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDD  157 (264)
T ss_dssp             CEEEEEECCSSEETT--TS--C----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTS
T ss_pred             CCEEEEEecCCcccC--cC--c----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchh
Confidence            689999999998884  21  1    11   2356777888888888643                              


Q ss_pred             -------------------------CCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          302 -------------------------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       302 -------------------------~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                                               +..++|+|++|.|||++.++.+.|+||+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          158 LDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             CCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             hhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                                     12399999999999998877678999998753

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.10  E-value=3.4e-10  Score=112.47  Aligned_cols=145  Identities=9%  Similarity=0.054  Sum_probs=101.0

Q ss_pred             cCcceeecCCceEEEEEECCCCeeeeEEEEEEEe--cCCCChhhHhHHHHHHHHHhCC--CCCcccceeeeecCCC-Cce
Q 011995          179 SDRCISEGLSSVMYRASFGDDASTSKKFEATVTR--LNPSSQGVKEFINDVNTLASLQ--HPNLCKLLGFHARDGS-DQR  253 (473)
Q Consensus       179 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ei~~l~~l~--HpnIv~l~g~~~~~~~-~~~  253 (473)
                      ..+.|+.|.++.||+....+.     .+.+++..  ..........+.+|+.+++.+.  +..+.+++.++.+... +..
T Consensus        42 ~~~~l~~G~sn~~y~v~~~~~-----~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~  116 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTPGQ-----TYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRA  116 (359)
T ss_dssp             EEEECCC-CCSCEEEEECSSC-----EEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSC
T ss_pred             eEEEcCCcccceEEEEEECCc-----eEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCe
Confidence            346789999999999975432     22233222  1111123457889999999996  4557788887754321 357


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC--------------------------------
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG--------------------------------  301 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~--------------------------------  301 (473)
                      |+||||++|..+.+..     ...++...+..++.+++..|..||...                                
T Consensus       117 ~~vme~v~G~~l~~~~-----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (359)
T 3dxp_A          117 FYIMEFVSGRVLWDQS-----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET  191 (359)
T ss_dssp             EEEEECCCCBCCCCTT-----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEecCCeecCCCc-----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence            8999999998875422     123678888999999999999999731                                


Q ss_pred             -----------------------CCceeecCCCCCceeeCCCCc--EEEeccCCCcc
Q 011995          302 -----------------------PFQAMYNEFSTANIQIDKDFS--AKLSGYGCAGH  333 (473)
Q Consensus       302 -----------------------~~~ivHrDlkp~NILl~~~~~--vkl~DFGla~~  333 (473)
                                             +..++|+|+++.|||++.++.  +.|+||+.+..
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                   245999999999999997753  68999998764

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.93  E-value=2.5e-09  Score=103.56  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=117.4

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCC--cccceeeeecCC-CCceEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPN--LCKLLGFHARDG-SDQRML  255 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-Hpn--Iv~l~g~~~~~~-~~~~~l  255 (473)
                      .+.++.|.+..||+..   +.     +.+++..   .......+.+|+++|+.+. +..  +.+++.+....+ ....|+
T Consensus        25 i~~~~~G~~n~v~~v~---~~-----~vlR~~~---~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~   93 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN---RD-----FIFKFPK---HSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFA   93 (304)
T ss_dssp             CCEEEECSSEEEEEST---TS-----EEEEEES---SHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCE
T ss_pred             eEecCCCCcceEEEEC---CE-----EEEEecC---CcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceE
Confidence            3568999999999873   21     2233322   2234567899999998883 333  334443332221 123588


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC----------------------------------
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG----------------------------------  301 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~----------------------------------  301 (473)
                      ||++++|.+|.+...     ..++...+..++.+++..|..||+..                                  
T Consensus        94 vm~~i~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
T 3sg8_A           94 GFTKIKGVPLTPLLL-----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGP  168 (304)
T ss_dssp             EEECCCCEECCHHHH-----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHH
T ss_pred             EEcccCCeECCcccc-----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcc
Confidence            999999988875432     13677788888888888888888611                                  


Q ss_pred             ---------------------CCceeecCCCCCceeeCC--CCcEEEeccCCCcccCCC-CccCcccccccCChhhhhc-
Q 011995          302 ---------------------PFQAMYNEFSTANIQIDK--DFSAKLSGYGCAGHIPET-DISNSSVAAANLSVETLER-  356 (473)
Q Consensus       302 ---------------------~~~ivHrDlkp~NILl~~--~~~vkl~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~-  356 (473)
                                           ++.++|+|+++.|||++.  +..+.|+||+.+...... +............++.... 
T Consensus       169 ~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~  248 (304)
T 3sg8_A          169 QMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKI  248 (304)
T ss_dssp             HHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHH
Confidence                                 245899999999999998  556889999987653211 1000000000023332211 


Q ss_pred             ----CCC---------CCcCCchHHHHHHHHHHcCCCCC
Q 011995          357 ----GLL---------TPKSNVWSFGIVLLELLTGRKNL  382 (473)
Q Consensus       357 ----~~~---------s~~sDvwSlGvvl~elltG~~p~  382 (473)
                          +..         ..-.+.|+++.++|++.+|..+|
T Consensus       249 l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          249 LNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                111         11257899999999999998765

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.39  E-value=2.9e-06  Score=82.07  Aligned_cols=136  Identities=14%  Similarity=0.139  Sum_probs=89.7

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCC---CcccceeeeecCCCCceEEEE
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP---NLCKLLGFHARDGSDQRMLIY  257 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hp---nIv~l~g~~~~~~~~~~~lV~  257 (473)
                      ..++.|....||+.   +..     +.+++-   ........+.+|.++|..+.+.   .+.+++.++... .+..++||
T Consensus        25 ~~l~~G~~n~v~~v---g~~-----~VlR~~---~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~-~g~~~~v~   92 (306)
T 3tdw_A           25 ESLGEGFRNYAILV---NGD-----WVFRFP---KSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRS-DGNPFVGY   92 (306)
T ss_dssp             EEEEECSSEEEEEE---TTT-----EEEEEE---SSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECT-TSCEEEEE
T ss_pred             eecCCCcceeEEEE---CCE-----EEEEec---CCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccC-CCceEEEE
Confidence            56788888899988   222     123321   2233456789999999999653   245666665422 35678999


Q ss_pred             EeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-------------------------------------
Q 011995          258 ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-------------------------------------  300 (473)
Q Consensus       258 E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-------------------------------------  300 (473)
                      ||++|..|.+....     .++......++.+++..|..||+.                                     
T Consensus        93 e~i~G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~  167 (306)
T 3tdw_A           93 RKVQGQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDES  167 (306)
T ss_dssp             ECCCSEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred             eccCCeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchh
Confidence            99999888763211     234455555555555555555542                                     


Q ss_pred             --------------------CCCceeecCCCCCceeeCC---CCc-EEEeccCCCcc
Q 011995          301 --------------------GPFQAMYNEFSTANIQIDK---DFS-AKLSGYGCAGH  333 (473)
Q Consensus       301 --------------------~~~~ivHrDlkp~NILl~~---~~~-vkl~DFGla~~  333 (473)
                                          .++.++|+|+++.|||++.   ++. +.|+||+.+..
T Consensus       168 ~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          168 LRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             hHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                                2335799999999999987   355 58999997754

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.32  E-value=4.3e-06  Score=78.99  Aligned_cols=136  Identities=16%  Similarity=0.071  Sum_probs=89.9

Q ss_pred             ceeecCCc-eEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEEEEEe
Q 011995          182 CISEGLSS-VMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       182 ~lG~G~~g-~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      .+..|..| .||+.....+.   ..+.+|+..    ......+.+|..+|+.+. +--+.++++++.+.  +..++|||+
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~---~~~~lk~~~----~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~--~~~~lvme~  101 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNA---PELFLKHGK----GSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTP--DDAWLLTTA  101 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTC---CCEEEEEEE----THHHHHHHHHHHHHHHHTTTSCCCCEEEEEEET--TEEEEEEEC
T ss_pred             EccCCCcCCeEEEEEecCCC---eEEEEEECC----CCCHhHHHHHHHHHHHhccCCCcCeEEEEEEEC--CeEEEEEEe
Confidence            45556665 69987643332   222244332    223466889999999884 32356778887765  678999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC--------------------------------------
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG--------------------------------------  301 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~--------------------------------------  301 (473)
                      ++|.++.+.....       ......++.+++..|.-||...                                      
T Consensus       102 l~G~~~~~~~~~~-------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (272)
T 4gkh_A          102 IPGKTAFQVLEEY-------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGW  174 (272)
T ss_dssp             CCSEEHHHHHHHC-------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTC
T ss_pred             eCCccccccccCC-------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccch
Confidence            9998877655221       1223445566666666666421                                      


Q ss_pred             -----------------CCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          302 -----------------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       302 -----------------~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                                       ++.++|+|+.+.|||++.++.+-|+||+.+..
T Consensus       175 ~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          175 PVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             CHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                             12479999999999999887778999997753

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.14  E-value=1.2e-05  Score=79.17  Aligned_cols=87  Identities=10%  Similarity=0.024  Sum_probs=49.8

Q ss_pred             cce-eecCCceEEEEEEC---CCCeeeeEEEEEEEecCCC--ChhhHhHHHHHHHHHhCC-C--CCcccceeeeecCC-C
Q 011995          181 RCI-SEGLSSVMYRASFG---DDASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASLQ-H--PNLCKLLGFHARDG-S  250 (473)
Q Consensus       181 ~~l-G~G~~g~Vy~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ei~~l~~l~-H--pnIv~l~g~~~~~~-~  250 (473)
                      +.| +.|....+|+....   ++......+.+++......  ......+.+|+.+++.+. +  -.+.+++.++.+.. .
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            556 77888899988643   1110123333333221100  001356788999998884 2  34667777664431 1


Q ss_pred             CceEEEEEeccCCChhh
Q 011995          251 DQRMLIYERLFHGSLDR  267 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~  267 (473)
                      +..++||||++|..+.+
T Consensus       106 g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             SSCEEEEECCCCBCCCB
T ss_pred             CCceEEEEecCCCChhh
Confidence            34689999998877653

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.85  E-value=0.00011  Score=73.47  Aligned_cols=77  Identities=10%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC------CChhhHhHHHHHHHHHhCCC--CCc-ccceeeeecCCC
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP------SSQGVKEFINDVNTLASLQH--PNL-CKLLGFHARDGS  250 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ei~~l~~l~H--pnI-v~l~g~~~~~~~  250 (473)
                      .+.||.|.++.||++....+   .+.+.+|......      .......+..|.++|..+..  +.. .+++.+  +.  
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~---~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~--  107 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEH---DRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DT--  107 (397)
T ss_dssp             EEECCSSSSEEEEEEEC-------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ET--
T ss_pred             EEECCCCceEEEEEEEECCC---CcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cC--
Confidence            35789999999999964322   2233343322110      01123456789999888742  333 355543  22  


Q ss_pred             CceEEEEEeccCC
Q 011995          251 DQRMLIYERLFHG  263 (473)
Q Consensus       251 ~~~~lV~E~~~~g  263 (473)
                      +..++||||+++.
T Consensus       108 ~~~~lvmE~l~g~  120 (397)
T 2olc_A          108 EMAVTVMEDLSHL  120 (397)
T ss_dssp             TTTEEEECCCTTS
T ss_pred             CccEEEEEeCCCc
Confidence            4568999999764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.82  E-value=0.00012  Score=71.32  Aligned_cols=31  Identities=6%  Similarity=0.056  Sum_probs=27.1

Q ss_pred             CCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       302 ~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +..++|+|+++.|||++.++.+.|+||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            3459999999999999888899999999764

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.52  E-value=0.0006  Score=65.84  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=85.1

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC---CCCcccceeeeecCCCCceEEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ---HPNLCKLLGFHARDGSDQRMLI  256 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~---HpnIv~l~g~~~~~~~~~~~lV  256 (473)
                      .+.|+.|....+|+....+     ..+.+|+...    .....+..|.+.|+.+.   ...+.+++.++...  +..++|
T Consensus        41 ~~~l~gG~~n~~y~v~~~~-----~~~vlK~~~~----~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~--g~~~lv  109 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDEV-----QTVFVKINER----SYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ--GHSFLL  109 (312)
T ss_dssp             EEEECCSSSSEEEEEESSS-----CEEEEEEEEG----GGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS--SEEEEE
T ss_pred             eEEeCCccceeeeEEEECC-----CeEEEEeCCc----ccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC--CceEEE
Confidence            3578999999999987422     2233443331    23466889999998883   35677888777654  678999


Q ss_pred             EEeccCCChhh-----------hhhcCCCCC-------------------CCCHHHHH---HHH----------------
Q 011995          257 YERLFHGSLDR-----------LIYGRSDGP-------------------PIDWNTRV---KIA----------------  287 (473)
Q Consensus       257 ~E~~~~gsL~~-----------~l~~~~~~~-------------------~l~~~~~~---~i~----------------  287 (473)
                      |||+++..+..           .|+......                   .-+|....   ++.                
T Consensus       110 me~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~  189 (312)
T 3jr1_A          110 LEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNI  189 (312)
T ss_dssp             EECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCH
T ss_pred             EEeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            99999876521           122221100                   11454321   111                


Q ss_pred             HHHHHH-HHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          288 LCAAQG-LTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       288 ~~i~~~-L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ..++.. ...|.. ..++.+||+|+.+.||+++.++ +.|+||.
T Consensus       190 ~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          190 DLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            112212 223432 2246799999999999999887 8899984

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.27  E-value=0.0013  Score=66.23  Aligned_cols=75  Identities=11%  Similarity=-0.014  Sum_probs=44.2

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCcccCCC-CccCcc--cccccCChhhhhcCC---CCCcCCchHHHHHHHHHH
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET-DISNSS--VAAANLSVETLERGL---LTPKSNVWSFGIVLLELL  376 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~--~t~~y~aPE~~~~~~---~s~~sDvwSlGvvl~ell  376 (473)
                      ..++|+|+++.|||++.++ +.|+||+.+..-... +.....  ....|++++......   .....++..+...+|+.+
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  310 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNLF  310 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999876 999999987643211 111111  013355555442111   111234456777777776


Q ss_pred             cC
Q 011995          377 TG  378 (473)
Q Consensus       377 tG  378 (473)
                      ++
T Consensus       311 ~~  312 (420)
T 2pyw_A          311 NK  312 (420)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.25  E-value=0.0017  Score=61.59  Aligned_cols=79  Identities=13%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCC---CcccceeeeecCCCCc
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP---NLCKLLGFHARDGSDQ  252 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hp---nIv~l~g~~~~~~~~~  252 (473)
                      .......+|.|..+.||+..+.++..    +.+|+... ........|.+|...|+.+.--   -+.+++++  +    .
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~----~~vK~~~~-~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~----~   84 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTP----LFVKALPD-DAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D----D   84 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCE----EEEEECCT-TCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E----T
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCE----EEEEEeCC-CCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c----C
Confidence            34556789999999999999877643    22332221 1222234578899999988422   23444443  1    2


Q ss_pred             eEEEEEeccCCCh
Q 011995          253 RMLIYERLFHGSL  265 (473)
Q Consensus       253 ~~lV~E~~~~gsL  265 (473)
                      -++||||++++..
T Consensus        85 ~~lv~e~l~~~~~   97 (288)
T 3f7w_A           85 RTLAMEWVDERPP   97 (288)
T ss_dssp             TEEEEECCCCCCC
T ss_pred             ceEEEEeecccCC
Confidence            3789999987654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.23  E-value=0.0015  Score=63.02  Aligned_cols=159  Identities=12%  Similarity=0.043  Sum_probs=86.0

Q ss_pred             CCCHHHHHHHhcccccC-----cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC-
Q 011995          164 NFPLDEVAAACHNFFSD-----RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN-  237 (473)
Q Consensus       164 ~~~~~el~~~~~~f~~~-----~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn-  237 (473)
                      .++.+++......|...     +.|+.|....+|+....++.     +.+++....   .....+..|+.++..+.... 
T Consensus         6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g~-----~vlk~~~~~---~~~~~l~~e~~~l~~L~~~g~   77 (322)
T 2ppq_A            6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDP-----LILTLYEKR---VEKNDLPFFLGLMQHLAAKGL   77 (322)
T ss_dssp             CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCC-----EEEEEECC------CCHHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCcc-----EEEEEeCCC---CCHHHHHHHHHHHHHHHHCCC
Confidence            46778888887778653     34566777899998765432     223333221   12345667888887773222 


Q ss_pred             -cccceee------eecCCCCceEEEEEeccCCChhh--------------hhhcCC-C--CC---CC---CHHHHHH--
Q 011995          238 -LCKLLGF------HARDGSDQRMLIYERLFHGSLDR--------------LIYGRS-D--GP---PI---DWNTRVK--  285 (473)
Q Consensus       238 -Iv~l~g~------~~~~~~~~~~lV~E~~~~gsL~~--------------~l~~~~-~--~~---~l---~~~~~~~--  285 (473)
                       +.+++..      ....  +..++||+|++|..+..              .++... .  ..   ..   .|.....  
T Consensus        78 ~vP~~~~~~~g~~~~~~~--g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~  155 (322)
T 2ppq_A           78 SCPLPLPRKDGELLGELS--GRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKS  155 (322)
T ss_dssp             CCCCBCCBTTCCSCEEET--TEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHH
T ss_pred             CCCcccCCCCCCEEEEEC--CEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHH
Confidence             2333321      1111  45689999998865421              111110 0  00   01   2322111  


Q ss_pred             ----------HHHHHHHHHHHhhhc----CCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          286 ----------IALCAAQGLTFLHEE----GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       286 ----------i~~~i~~~L~yLH~~----~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                                +...+...+++++..    .+..++|+|+.+.|||++.++.+.|+||+.+.
T Consensus       156 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          156 EERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             GGGGGGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence                      011134455555532    23459999999999999987666899998764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.12  E-value=0.0017  Score=63.01  Aligned_cols=32  Identities=9%  Similarity=0.053  Sum_probs=27.2

Q ss_pred             CCceeecCCCCCceeeCCC----CcEEEeccCCCcc
Q 011995          302 PFQAMYNEFSTANIQIDKD----FSAKLSGYGCAGH  333 (473)
Q Consensus       302 ~~~ivHrDlkp~NILl~~~----~~vkl~DFGla~~  333 (473)
                      +..++|+|+.+.|||++.+    +.+.|+||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            3469999999999999874    6799999998754

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.12  E-value=0.0017  Score=62.13  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=25.4

Q ss_pred             CCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       302 ~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +..++|+|+.+.||+ ..++.+.|+||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            345899999999999 5566789999987753

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.12  E-value=0.012  Score=56.61  Aligned_cols=159  Identities=11%  Similarity=0.114  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHhccccc-----CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCC--
Q 011995          164 NFPLDEVAAACHNFFS-----DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP--  236 (473)
Q Consensus       164 ~~~~~el~~~~~~f~~-----~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hp--  236 (473)
                      .++.+++......|..     ...|+ |....||+....++    +.+.+|+..  ........+..|..++..+...  
T Consensus        10 ~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g----~~~vlK~~~--~~~~~~~~~~~E~~~~~~L~~~g~   82 (328)
T 1zyl_A           10 TLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDR----RRFVVKFYR--PERWTADQILEEHQFALQLVNDEV   82 (328)
T ss_dssp             CCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTC----CCEEEEEEC--TTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCC----CEEEEEEcC--CCCCCHHHHHHHHHHHHHHHHcCC
Confidence            3666777766666643     23466 77889998864333    222344332  2222345677788888877422  


Q ss_pred             Ccccceee-----eecCCCCceEEEEEeccCCChhh----h----------hhcC----C--CCCCCCHHHH----HHHH
Q 011995          237 NLCKLLGF-----HARDGSDQRMLIYERLFHGSLDR----L----------IYGR----S--DGPPIDWNTR----VKIA  287 (473)
Q Consensus       237 nIv~l~g~-----~~~~~~~~~~lV~E~~~~gsL~~----~----------l~~~----~--~~~~l~~~~~----~~i~  287 (473)
                      .+.+++..     ...  .+..++||+|++|..+..    .          ++..    .  ....+++...    ..++
T Consensus        83 ~vp~~~~~~g~~~~~~--~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (328)
T 1zyl_A           83 PVAAPVAFNGQTLLNH--QGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF  160 (328)
T ss_dssp             SBCCCCCBTTBSCEEE--TTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHH
T ss_pred             eecceeecCCcEEEEE--CCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHH
Confidence            23444432     111  245678999998754320    0          1110    0  0112232211    0010


Q ss_pred             ---------------HHHHHHHHHhhh----cCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          288 ---------------LCAAQGLTFLHE----EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       288 ---------------~~i~~~L~yLH~----~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                                     ..+...++.+..    ..+..++|+|+++.|||++ + .+.|+||+.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          161 EDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             HTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             hhcCcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence                           011112223222    1234589999999999999 4 899999987653

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.83  E-value=0.0026  Score=64.28  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=45.2

Q ss_pred             cceeecCCceEEEEEECCCCe----eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCc-ccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGDDAS----TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL-CKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI-v~l~g~~~~~~~~~~~l  255 (473)
                      ..|+.|....||+....++..    ....+.+++...   ......+.+|..++..+...++ .++++++.    +  .+
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~---~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~----~--g~  149 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN---PETESHLVAESVIFTLLSERHLGPKLYGIFS----G--GR  149 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECS---CCCHHHHHHHHHHHHHHHHTTSSSCEEEEET----T--EE
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCC---CCcHHHHHHHHHHHHHHHhCCCCCcEEEEeC----C--CE
Confidence            567788889999998754211    122333443321   1112566789999988853334 56766542    1  28


Q ss_pred             EEEeccCCCh
Q 011995          256 IYERLFHGSL  265 (473)
Q Consensus       256 V~E~~~~gsL  265 (473)
                      |+||++|.+|
T Consensus       150 v~e~l~G~~l  159 (429)
T 1nw1_A          150 LEEYIPSRPL  159 (429)
T ss_dssp             EECCCCEEEC
T ss_pred             EEEEeCCccc
Confidence            9999976444

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.80  E-value=0.0042  Score=63.22  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=42.1

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCc-ccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL-CKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI-v~l~g~~~~~~~~~~~lV~E~  259 (473)
                      ..|+.|-...+|+....+.   ...+.+++...  .........+|..++..+...++ .++++++  .  +  .+||||
T Consensus       114 ~~lsgG~tN~~y~v~~~~~---~~~~vLRi~g~--~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~--~--~--G~v~e~  182 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSK---QAKYLIRLYGP--KTDEIINREREKKISCILYNKNIAKKIYVFF--T--N--GRIEEF  182 (458)
T ss_dssp             EEECC--CEEEEEEEETTT---TEEEEEEEECC---CCSCSCHHHHHHHHHHHTTSSSBCCEEEEE--T--T--EEEEEC
T ss_pred             EEcCCCeEeEEEEEEECCC---CceEEEEECCC--ChhhhcCHHHHHHHHHHHHhcCCCCCEEEEe--C--C--eEEEEe
Confidence            5677788889999986541   12222333321  11111122589999999865555 4676665  2  2  259999


Q ss_pred             ccCCCh
Q 011995          260 LFHGSL  265 (473)
Q Consensus       260 ~~~gsL  265 (473)
                      ++|..|
T Consensus       183 I~G~~l  188 (458)
T 2qg7_A          183 MDGYAL  188 (458)
T ss_dssp             CCSEEC
T ss_pred             eCCccC
Confidence            987544

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.69  E-value=0.005  Score=60.98  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             cceeecCCceEEEEEECCCCe----eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGDDAS----TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      +.|..|-...+|+....++..    ..+.+.+++  ..........+.+|..+++.+. +.-..++++++.    +  .+
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~--~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~----~--g~  127 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRL--YGAILQGVDSLVLESVMFAILAERSLGPQLYGVFP----E--GR  127 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEE--CC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEET----T--EE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEE--CCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcC----C--cc
Confidence            457778888899998643110    112332332  1221223456678999998884 333356666542    2  28


Q ss_pred             EEEeccCCChhhh-----------------hhcCC--CCCCCC--HHHHHHHHHHHHH-------------------HHH
Q 011995          256 IYERLFHGSLDRL-----------------IYGRS--DGPPID--WNTRVKIALCAAQ-------------------GLT  295 (473)
Q Consensus       256 V~E~~~~gsL~~~-----------------l~~~~--~~~~l~--~~~~~~i~~~i~~-------------------~L~  295 (473)
                      ||||++|..|...                 |+...  -+....  |..+.++..++..                   .+.
T Consensus       128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~  207 (379)
T 3feg_A          128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG  207 (379)
T ss_dssp             EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred             EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence            9999988655311                 11111  011222  4555555544322                   233


Q ss_pred             Hhh----hc-CCCceeecCCCCCceeeCCC----CcEEEeccCCCc
Q 011995          296 FLH----EE-GPFQAMYNEFSTANIQIDKD----FSAKLSGYGCAG  332 (473)
Q Consensus       296 yLH----~~-~~~~ivHrDlkp~NILl~~~----~~vkl~DFGla~  332 (473)
                      .|.    .. .+..++|+|+.+.|||++.+    +.+.|+||..+.
T Consensus       208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            332    21 23469999999999999876    789999998764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.49  E-value=0.0085  Score=58.95  Aligned_cols=29  Identities=17%  Similarity=0.246  Sum_probs=24.2

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      ..++|+|+.+.|||++.++ +.|+||..+.
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            3599999999999998665 8999998764

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.27  E-value=0.0075  Score=54.36  Aligned_cols=98  Identities=14%  Similarity=0.090  Sum_probs=62.9

Q ss_pred             CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCccC
Q 011995          263 GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISN  341 (473)
Q Consensus       263 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~~~  341 (473)
                      -+|.++|..  .+.+|++.++..++.|.+.+|.-+-. ..   -..+=+.|..|+|..+|.|...+ +.+.         
T Consensus        33 vSL~eIL~~--~~~PlsEEqaWALc~Qc~~~L~~~~~~~~---~~~~i~~~~~i~l~~dG~V~f~~-~~s~---------   97 (229)
T 2yle_A           33 LSLEEILRL--YNQPINEEQAWAVCYQCCGSLRAAARRRQ---PRHRVRSAAQIRVWRDGAVTLAP-AADD---------   97 (229)
T ss_dssp             EEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHTTC---CCCCCCSGGGEEEETTSCEEECC-C------------
T ss_pred             ccHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHhhhhccc---CCceecCCcceEEecCCceeccc-cccc---------
Confidence            378898854  35689999999999999998877622 12   11223357899999999988764 2110         


Q ss_pred             cccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc
Q 011995          342 SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT  377 (473)
Q Consensus       342 ~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt  377 (473)
                       .....+.+||... ...+.+.=|||||+++|.-+-
T Consensus        98 -~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A           98 -AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             ----------CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             -ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence             1122445677653 234567789999999998876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=94.36  E-value=0.013  Score=63.64  Aligned_cols=61  Identities=10%  Similarity=0.080  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCChhhhhhhhhhhccchhhhhhhhhhcc
Q 011995           34 PEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKSR  103 (473)
Q Consensus        34 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (473)
                      ..+.+..|.|+|.||..+..++.|+.||   ||+|+ +.|.+|.....     +.+...+|.||...|+.
T Consensus       683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~---ls~N~-l~g~iP~~~~~-----~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQAMSALTMLTEID---LSNNN-LSGPIPEMGQF-----ETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             CEEECCSSCCEECCCGGGGGCCCCSEEE---CCSSE-EEEECCSSSSG-----GGSCGGGGCSCTEEEST
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEE---CcCCc-ccccCCCchhh-----ccCCHHHhcCCchhcCC
Confidence            3344455555555555555555555555   55555 55555554221     12344567777777754

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=94.14  E-value=0.24  Score=49.54  Aligned_cols=143  Identities=13%  Similarity=0.114  Sum_probs=78.9

Q ss_pred             cceeecCCceEEEEEECCCCee----eeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCC-cccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGDDAST----SKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPN-LCKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn-Iv~l~g~~~~~~~~~~~l  255 (473)
                      +.|..|-...+|+....++...    ...+.+.+.  .......-...+|..+++.+...+ ..++++.+  .    -++
T Consensus        76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~--g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~----~~~  147 (424)
T 3mes_A           76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIY--GKHVGKFYDSKVELDVFRYLSNINIAPNIIADF--P----EGR  147 (424)
T ss_dssp             EEECCCSSSEEEEEEECCC-----CCCSEEEEEEC--CCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T----TEE
T ss_pred             EEcCCCcccceEEEEeCCCcccccCCCCeEEEEEC--CCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEc--C----CCE
Confidence            5677788888999987532211    233333332  222222233468888888884333 34565433  2    268


Q ss_pred             EEEeccCCChhh--h---------------hhc----C---C---CCCCCCHHHHHHHHHHH------------------
Q 011995          256 IYERLFHGSLDR--L---------------IYG----R---S---DGPPIDWNTRVKIALCA------------------  290 (473)
Q Consensus       256 V~E~~~~gsL~~--~---------------l~~----~---~---~~~~l~~~~~~~i~~~i------------------  290 (473)
                      ||||++|..|..  +               ||.    .   .   ...+.-|..+.++..++                  
T Consensus       148 I~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~  227 (424)
T 3mes_A          148 IEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSK  227 (424)
T ss_dssp             EEECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHH
T ss_pred             EEEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHH
Confidence            999998865421  0               011    0   0   11112344444443322                  


Q ss_pred             -HHHHHHhh---------------------hcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          291 -AQGLTFLH---------------------EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       291 -~~~L~yLH---------------------~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                       ...+.+|.                     ...+..++|+|+.+.||+ +.++.+.|+||..+.
T Consensus       228 l~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~  290 (424)
T 3mes_A          228 ILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSA  290 (424)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCC
Confidence             12233332                     112346899999999999 778899999998775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.38  E-value=0.0004  Score=71.48  Aligned_cols=31  Identities=10%  Similarity=-0.063  Sum_probs=25.4

Q ss_pred             hhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          218 QGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       218 ~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .+.++|..|++.+.+++|+|+|+++|||...
T Consensus       321 ~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~  351 (487)
T 3oja_A          321 QGSETERLECERENQARQREIDALKEQYRTV  351 (487)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccHHHHHHHHHHHhcccccchhhHHHHhcCh
Confidence            4467899999999999999999999999754

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=91.46  E-value=0.73  Score=45.57  Aligned_cols=29  Identities=14%  Similarity=0.153  Sum_probs=24.3

Q ss_pred             ceeecCCCCCceee------CCCCcEEEeccCCCc
Q 011995          304 QAMYNEFSTANIQI------DKDFSAKLSGYGCAG  332 (473)
Q Consensus       304 ~ivHrDlkp~NILl------~~~~~vkl~DFGla~  332 (473)
                      .++|+|+.+.|||+      +++..+.++||-.|.
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            36799999999999      456779999998764

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=88.90  E-value=1.6  Score=39.06  Aligned_cols=115  Identities=10%  Similarity=0.098  Sum_probs=77.3

Q ss_pred             CCCCcccceeeeecCCCCceEEEEEeccCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCC
Q 011995          234 QHPNLCKLLGFHARDGSDQRMLIYERLFHG-SLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFST  312 (473)
Q Consensus       234 ~HpnIv~l~g~~~~~~~~~~~lV~E~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp  312 (473)
                      .||+++.. .+..++  +.+.+.|+.-+++ ++.. +      ..++...+++++.+|+....+++.     -+|--|.|
T Consensus        43 ~~~~Fl~~-~I~e~e--D~v~~~y~~~~~~~~f~~-i------k~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P  107 (215)
T 4ann_A           43 HSPYFIDA-ELTELR--DSFQIHYDINDNHTPFDN-I------KSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAP  107 (215)
T ss_dssp             CCTTBCCE-EEEECS--SEEEEEECCCTTSEEGGG-G------GGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSG
T ss_pred             cCCcccce-EEEEcc--cEEEEEEEcCcccCCHHH-H------HhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEec
Confidence            68888876 344443  5665655543322 2222 3      236789999999999887765554     47888999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      +||+++.++.+++.-.|+-..+....          +..|.+          .-.+=|++..+++++..|.
T Consensus       108 ~NL~f~~~~~p~i~~RGik~~l~P~~----------~~ee~f----------L~qyKAliiall~~K~~Fe  158 (215)
T 4ann_A          108 DELFFTRDGLPIAKTRGLQNVVDPLP----------VSEAEF----------LTRYKALVICAFNEKQSFD  158 (215)
T ss_dssp             GGEEECTTSCEEESCCEETTTBSCCC----------CCHHHH----------HHHHHHHHHHHHCTTCCHH
T ss_pred             ceEEEcCCCCEEEEEccCccCCCCCC----------CCHHHH----------HHHHHHHHHHHHcCCCCHH
Confidence            99999999999999888754432211          223333          3466788899999988774

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=88.06  E-value=0.36  Score=46.63  Aligned_cols=32  Identities=6%  Similarity=0.094  Sum_probs=27.6

Q ss_pred             CCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          302 PFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       302 ~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +..++|+|+.+.||+++.++.+.|+||+.+..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            34699999999999999888899999987654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=87.82  E-value=0.21  Score=54.12  Aligned_cols=46  Identities=13%  Similarity=0.032  Sum_probs=27.8

Q ss_pred             CCCCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCChhh
Q 011995           31 TTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSSLD   80 (473)
Q Consensus        31 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~~~   80 (473)
                      +.|..+.+..|.|+|.+|..+.+++.|+.||   ||+|+ ++|.+|+++.
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~---Ls~N~-l~g~ip~~l~  677 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILN---LGHND-ISGSIPDEVG  677 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEE---CCSSC-CCSCCCGGGG
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEe---CcCCc-cCCCCChHHh
Confidence            3455556666666666666666666666666   66666 6666665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=86.79  E-value=0.19  Score=47.91  Aligned_cols=65  Identities=11%  Similarity=0.052  Sum_probs=53.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCChhhhhhhhhhhccchhhhhhhhhhc
Q 011995           29 TPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKS  102 (473)
Q Consensus        29 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (473)
                      ..+.|.++.+..|.|+|.+|..+..++.|+.|+   |++|+ +.|.+|....     -..+..+.+.+|...|+
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~---Ls~N~-l~~~ip~~~~-----l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN---VSFNN-LCGEIPQGGN-----LQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE---CCSSE-EEEECCCSTT-----GGGSCGGGTCSSSEEES
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcCcCCCEEE---CcCCc-ccccCCCCcc-----ccccChHHhcCCCCccC
Confidence            456788899999999999999999999999999   99999 9999998621     12456677888877765

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=86.00  E-value=2.2  Score=38.25  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=75.8

Q ss_pred             CCCCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHH-HhhhcCCCceeecCCCC
Q 011995          234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT-FLHEEGPFQAMYNEFST  312 (473)
Q Consensus       234 ~HpnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~-yLH~~~~~~ivHrDlkp  312 (473)
                      .||++ .. .+..++  +.+.+.|+.-+++-=...+.      .++...+++++.+|+.... +++.     -+|--|.|
T Consensus        48 ~~~~f-~~-~I~~~e--D~~~i~y~~~~~~~~f~~i~------~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P  112 (219)
T 4ano_A           48 VDPCI-VR-DIDVSE--DEVKVVIKPPSSFLTFAAIR------KTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCP  112 (219)
T ss_dssp             SCSSS-EE-EEEECS--SEEEEEEECCTTCEEHHHHH------TSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCG
T ss_pred             cCCCC-Ce-EEEEeC--CEEEEEEEcCcccCcHHHHH------hcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeC
Confidence            67777 33 233333  67777776543432233332      3678899999999887766 5554     57888999


Q ss_pred             CceeeCCCCcEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCC
Q 011995          313 ANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLD  383 (473)
Q Consensus       313 ~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~  383 (473)
                      +||+++.++.++|.-.|+-..++...          +..|.+          +-.+=|++..++.++..|.
T Consensus       113 ~NL~f~~~~~p~i~hRGi~~~lpP~e----------~~ee~f----------l~qyKali~all~~K~~Fe  163 (219)
T 4ano_A          113 ENLMFNRALEPFFLHVGVKESLPPDE----------WDDERL----------LREVKATVLALTEGEYRFD  163 (219)
T ss_dssp             GGEEECTTCCEEESCCEETTTBSSCS----------CCHHHH----------HHHHHHHHHHHTTCSSCHH
T ss_pred             ceEEEeCCCcEEEEEcCCcccCCCCC----------CCHHHH----------HHHHHHHHHHHHcCCCCHH
Confidence            99999999999999988754432211          233433          3356678888888877664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=83.42  E-value=0.63  Score=39.79  Aligned_cols=46  Identities=15%  Similarity=0.170  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCCh
Q 011995           29 TPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSS   78 (473)
Q Consensus        29 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~   78 (473)
                      .++.|..+.+..|.|++.+|..+..++.|+.|+   |++|+ +.+-.|..
T Consensus        28 ~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~---Ls~N~-l~~l~~~~   73 (170)
T 3g39_A           28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD---LDNNQ-LTVLPAGV   73 (170)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEE---CCSSC-CCCCCTTT
T ss_pred             CCCCCcEEEcCCCcCCccChhhhcCcccCCEEE---CCCCC-cCccChhh
Confidence            357788899999999999999999999999999   99999 77554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=81.86  E-value=0.79  Score=39.41  Aligned_cols=44  Identities=9%  Similarity=0.073  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCC
Q 011995           29 TPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAP   76 (473)
Q Consensus        29 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p   76 (473)
                      .++.|..+.+..|.|++.+|..+..++.|+.|+   |++|+ +++-.+
T Consensus        31 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---Ls~N~-l~~i~~   74 (174)
T 2r9u_A           31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLY---FNSNK-LTAIPT   74 (174)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSC-CCCCCT
T ss_pred             cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEE---CCCCC-CCccCh
Confidence            357788899999999999999999999999999   99999 776433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=81.55  E-value=0.33  Score=42.53  Aligned_cols=40  Identities=13%  Similarity=0.052  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCC
Q 011995           33 LPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAP   76 (473)
Q Consensus        33 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p   76 (473)
                      |..+.+..|.|++.+|..+..++.|+.|+   |++|+ +.+..|
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---Ls~N~-l~~~~~   95 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQ---LGENK-IKEISN   95 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEE---CCSCC-CCEECS
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEE---CCCCc-CCccCH
Confidence            44444555555555555555555555555   55555 444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=80.50  E-value=0.58  Score=40.03  Aligned_cols=44  Identities=11%  Similarity=0.157  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCCh
Q 011995           31 TTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSS   78 (473)
Q Consensus        31 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~   78 (473)
                      +.|..+.+..|.|++.+|..+..++.|+.|+   |++|+ +.+-.|..
T Consensus        54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~---L~~N~-l~~~~~~~   97 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS---LNDNQ-LKSIPRGA   97 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSC-CCCCCTTT
T ss_pred             ccCCEEECCCCCcCccChhhccCCCCCCEEE---CCCCc-cCEeCHHH
Confidence            3456677888888888888888888888888   88888 76655543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=80.29  E-value=0.58  Score=44.94  Aligned_cols=41  Identities=17%  Similarity=0.072  Sum_probs=19.3

Q ss_pred             CCCCCCCC-CCCCCCCCcccccCCcccccCccccccccccccCCCC
Q 011995           33 LPEPQIPT-RSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPS   77 (473)
Q Consensus        33 ~~~~~~~~-~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~   77 (473)
                      |.++.+.+ |.|++.+|..|..++.|+.|+   |++|+ +++..|.
T Consensus        33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~---l~~N~-l~~~~~~   74 (347)
T 2ifg_A           33 LTELYIENQQHLQHLELRDLRGLGELRNLT---IVKSG-LRFVAPD   74 (347)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEE---CCSSC-CCEECTT
T ss_pred             eeEEEccCCCCCCCcChhHhccccCCCEEE---CCCCc-cceeCHH
Confidence            33344443 455555444444455555555   55554 4444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-41
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-40
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-40
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-39
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-39
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-39
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-38
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-38
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-36
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-36
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	6e-36
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	6e-36
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-35
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-35
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-35
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-35
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-35
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	7e-35
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	7e-35
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-34
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-34
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	5e-34
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	8e-34
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-33
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-33
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-32
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-32
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-31
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	8e-31
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-30
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-30
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-28
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-28
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-27
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-26
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	6e-26
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-26
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	9e-26
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-25
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-25
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	5e-25
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-25
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-23
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-23
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-23
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-22
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-22
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-22
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-21
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-21
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-20
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-19
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-19
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-18
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-18
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-18
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-17
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-16
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-15
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-12

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (373), Expect = 1e-41
 Identities = 51/281 (18%), Positives = 110/281 (39%), Gaps = 32/281 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           + I  G    +Y+  +  D +        +    P+ Q ++ F N+V  L   +H N+  
Sbjct: 14  QRIGSGSFGTVYKGKWHGDVAV-----KMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
            +G+     + Q  ++ +     SL   ++        +    + IA   AQG+ +LH +
Sbjct: 69  FMGYST---APQLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAK 123

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAA-------ANLSVET 353
                ++ +  + NI + +D + K+  +G A        S+            A   +  
Sbjct: 124 S---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRM 180

Query: 354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP 413
            ++   + +S+V++FGIVL EL+TG+    + + +++   +        D  ++      
Sbjct: 181 QDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPK 240

Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
            +K             +   CL+K+  ERP    I   ++ 
Sbjct: 241 AMK------------RLMAECLKKKRDERPLFPQILASIEL 269

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 3e-40
 Identities = 49/306 (16%), Positives = 99/306 (32%), Gaps = 39/306 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             I +G    ++R          +  E  V   +   +       ++     L+H N+  
Sbjct: 9   ESIGKGRFGEVWRG-------KWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILG 61

Query: 241 LLGFHARDGSD--QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
            +    +D     Q  L+ +   HGSL   +        +     +K+AL  A GL  LH
Sbjct: 62  FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLH 117

Query: 299 EEGPFQAM-----YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANL---- 349
            E           + +  + NI + K+ +  ++  G A        +        +    
Sbjct: 118 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKR 177

Query: 350 --------SVETLERGLLTPKSNVWSFGIVLLELLTGRK----NLDSRHPKEERNLVKWS 397
                       ++      ++++++ G+V  E+         + D + P  +      S
Sbjct: 178 YMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237

Query: 398 RPFLADDCRLSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSI---FEELD 453
              +         + P +  R+   +A R +A I   C     + R T   I     +L 
Sbjct: 238 VEEMRKV-VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296

Query: 454 RQESRK 459
           +QE  K
Sbjct: 297 QQEGIK 302

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 6e-40
 Identities = 49/276 (17%), Positives = 104/276 (37%), Gaps = 34/276 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           + I +G    +            +  +  V  +   +   + F+ + + +  L+H NL +
Sbjct: 13  QTIGKGEFGDVMLG-------DYRGNKVAVKCIKNDAT-AQAFLAEASVMTQLRHSNLVQ 64

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           LLG    +      ++ E +  GSL   +  R     +  +  +K +L   + + +L   
Sbjct: 65  LLGVIVEE-KGGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGN 122

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLT 360
                 + + +  N+ + +D  AK+S +G       T      +     + E L     +
Sbjct: 123 NFV---HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-DTGKLPVKWTAPEALREKKFS 178

Query: 361 PKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQLKGR 418
            KS+VWSFGI+L E+ +  +    R P ++    + K  +    D C       P +   
Sbjct: 179 TKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGC------PPAVY-- 230

Query: 419 FPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                     ++   C   + + RP+   + E+L+ 
Sbjct: 231 ----------EVMKNCWHLDAAMRPSFLQLREQLEH 256

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 4e-39
 Identities = 51/283 (18%), Positives = 105/283 (37%), Gaps = 37/283 (13%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           + I  G   +++   + +        +  +  +   +   ++FI +   +  L HP L +
Sbjct: 11  QEIGSGQFGLVHLGYWLNKD------KVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 64

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L G           L++E + HG L    Y R+        T + + L   +G+ +L E 
Sbjct: 65  LYGVCLEQ--APICLVFEFMEHGCLSD--YLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 120

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---LSVETLERG 357
                ++ + +  N  + ++   K+S +G    + +   ++S+         S E     
Sbjct: 121 C---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFS 177

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQL 415
             + KS+VWSFG+++ E+ +  K         E   ++    R +               
Sbjct: 178 RYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLY--------------- 222

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR-QES 457
               P  A+  V  I   C ++ P +RP    +  +L    ES
Sbjct: 223 ---KPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES 262

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  140 bits (354), Expect = 5e-39
 Identities = 49/296 (16%), Positives = 111/296 (37%), Gaps = 30/296 (10%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ 234
            +      +  G    +Y          S      V  L   +  V+EF+ +   +  ++
Sbjct: 17  TDITMKHKLGGGQYGEVYEGV---WKKYSLTV--AVKTLKEDTMEVEEFLKEAAVMKEIK 71

Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGL 294
           HPNL +LLG   R+      +I E + +G+L   +    +   +     + +A   +  +
Sbjct: 72  HPNLVQLLGVCTRE--PPFYIITEFMTYGNLLDYLR-ECNRQEVSAVVLLYMATQISSAM 128

Query: 295 TFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANL---SV 351
            +L ++      + + +  N  + ++   K++ +G +  +     +  + A   +   + 
Sbjct: 129 EYLEKKNFI---HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 185

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
           E+L     + KS+VW+FG++L E+ T   +        +                +  ++
Sbjct: 186 ESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----------------VYELL 229

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSSSSTVRR 467
           +   +   P      V ++   C Q  PS+RP+   I +  +      S S  V +
Sbjct: 230 EKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEK 285

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 6e-39
 Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             +  G    ++   +          +  V  L   S     F+ + N +  LQH  L +
Sbjct: 19  ERLGAGQFGEVWMGYYNGHT------KVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L         +   +I E + +GSL   +   S G  +  N  + +A   A+G+ F+ E 
Sbjct: 73  LYAVVT---QEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER 128

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---LSVETLERG 357
                ++ +   ANI +    S K++ +G A  I + + +    A       + E +  G
Sbjct: 129 NY---IHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYG 185

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQL 415
             T KS+VWSFGI+L E++T  +         E  +NL +  R    D+C   L      
Sbjct: 186 TFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELY----- 240

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                         +   C ++ P +RPT   +   L+
Sbjct: 241 -------------QLMRLCWKERPEDRPTFDYLRSVLE 265

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 2e-38
 Identities = 42/277 (15%), Positives = 102/277 (36%), Gaps = 36/277 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           + +  G   V+    +        +++  +  +   S    EFI +   + +L H  L +
Sbjct: 10  KELGTGQFGVVKYGKWRG------QYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ 63

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L G   +       +I E + +G L   +              +++     + + +L  +
Sbjct: 64  LYGVCTKQ--RPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLESK 119

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---LSVETLERG 357
                ++ + +  N  ++     K+S +G + ++ + + ++S  +         E L   
Sbjct: 120 QF---LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYS 176

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQL 415
             + KS++W+FG+++ E+ +  K    R    E   ++ +  R +               
Sbjct: 177 KFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLY--------------- 221

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
               P  A+  V  I   C  ++  ERPT + +   +
Sbjct: 222 ---RPHLASEKVYTIMYSCWHEKADERPTFKILLSNI 255

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 5e-38
 Identities = 58/287 (20%), Positives = 110/287 (38%), Gaps = 34/287 (11%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASL 233
           +F  +  I  G    +Y  +  D+    KK    V  LN  +    V +F+ +   +   
Sbjct: 30  HF--NEVIGRGHFGCVYHGTLLDN--DGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF 85

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
            HPN+  LLG   R      +++   + HG L   I   +  P       +   L  A+G
Sbjct: 86  SHPNVLSLLGICLRS-EGSPLVVLPYMKHGDLRNFIRNETHNPT--VKDLIGFGLQVAKG 142

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAA------ 347
           + FL  +      + + +  N  +D+ F+ K++ +G A  + + +  +            
Sbjct: 143 MKFLASKKFV---HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVK 199

Query: 348 NLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL 407
            +++E+L+    T KS+VWSFG++L EL+T         P  + N    +   L     L
Sbjct: 200 WMALESLQTQKFTTKSDVWSFGVLLWELMTRG-----APPYPDVNTFDITVYLLQGRRLL 254

Query: 408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                       P      + ++ L+C   +   RP+   +   +  
Sbjct: 255 -----------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISA 290

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 1e-36
 Identities = 53/303 (17%), Positives = 110/303 (36%), Gaps = 42/303 (13%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASL-QHPN 237
           + +  G    +  A+      +       V  L PS+     +  ++++  L+ L  H N
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR---------------SDGPPIDWNT 282
           +  LLG          ++I E   +G L   +  +                D   +D   
Sbjct: 89  IVNLLGACTIG--GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLED 146

Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNS 342
            +  +   A+G+ FL  +     ++ + +  NI +      K+  +G A  I        
Sbjct: 147 LLSFSYQVAKGMAFLASKNC---IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVV 203

Query: 343 S----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
                +    ++ E++   + T +S+VWS+GI L EL +   +     P + +       
Sbjct: 204 KGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK------- 256

Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR 458
                      ++    +   P  A   + DI   C   +P +RPT + I + +++Q S 
Sbjct: 257 --------FYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308

Query: 459 KSS 461
            ++
Sbjct: 309 STN 311

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 3e-36
 Identities = 56/301 (18%), Positives = 112/301 (37%), Gaps = 36/301 (11%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH 235
           +F     +  G   V+++ S      +       +  L        + I ++  L     
Sbjct: 7   DFEKISELGAGNGGVVFKVS---HKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 236 PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT 295
           P +    G    DG  +  +  E +  GSLD+++        I      K+++   +GLT
Sbjct: 64  PYIVGFYGAFYSDG--EISICMEHMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLT 118

Query: 296 FLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLE 355
           +L E+     M+ +   +NI ++     KL  +G +G + ++  ++     + +S E L+
Sbjct: 119 YLREKHKI--MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ 176

Query: 356 RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-------------------- 395
               + +S++WS G+ L+E+  GR  +     KE   +                      
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP 236

Query: 396 ------WSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIF 449
                  SRP +A    L  I++           +    D   +CL K P+ER  ++ + 
Sbjct: 237 LSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLM 296

Query: 450 E 450
            
Sbjct: 297 V 297

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  133 bits (334), Expect = 6e-36
 Identities = 60/309 (19%), Positives = 114/309 (36%), Gaps = 52/309 (16%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLAS 232
           +N    R I EG    +++A               V  L    S+    +F  +   +A 
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 72

Query: 233 LQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRS------------------- 273
             +PN+ KLLG  A        L++E + +G L+  +   S                   
Sbjct: 73  FDNPNIVKLLGVCAVG--KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 130

Query: 274 --DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA 331
               PP+    ++ IA   A G+ +L E      ++ + +T N  + ++   K++ +G +
Sbjct: 131 SPGPPPLSCAEQLCIARQVAAGMAYLSERKF---VHRDLATRNCLVGENMVVKIADFGLS 187

Query: 332 GHIPETDISNSS----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHP 387
            +I   D   +     +    +  E++     T +S+VW++G+VL E+ +          
Sbjct: 188 RNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 247

Query: 388 KEE--RNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTM 445
            EE    +   +     ++C L L                   ++   C  K P++RP+ 
Sbjct: 248 HEEVIYYVRDGNILACPENCPLELY------------------NLMRLCWSKLPADRPSF 289

Query: 446 RSIFEELDR 454
            SI   L R
Sbjct: 290 CSIHRILQR 298

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 6e-36
 Identities = 53/284 (18%), Positives = 108/284 (38%), Gaps = 36/284 (12%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ 234
            +   +  + +G    ++  ++             +  L P +   + F+ +   +  L+
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTT------RVAIKTLKPGTMSPEAFLQEAQVMKKLR 70

Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGL 294
           H  L +L    + +      ++ E +  GSL   + G   G  +     V +A   A G+
Sbjct: 71  HEKLVQLYAVVSEE---PIYIVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGM 126

Query: 295 TFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANL---SV 351
            ++         + +   ANI + ++   K++ +G A  I + + +    A   +   + 
Sbjct: 127 AYVERMNYV---HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 183

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI- 410
           E    G  T KS+VWSFGI+L EL T                    R          ++ 
Sbjct: 184 EAALYGRFTIKSDVWSFGILLTELTTKG------------------RVPYPGMVNREVLD 225

Query: 411 -MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
            ++   +   P +   ++ D+  +C +KEP ERPT   +   L+
Sbjct: 226 QVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 269

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 2e-35
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             + +G    +Y+A    +  TS    A V     S + +++++ +++ LAS  HPN+ K
Sbjct: 18  GELGDGAFGKVYKAQ---NKETSVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVK 73

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           LL     +  +   ++ E    G++D ++       P+  +    +       L +LH+ 
Sbjct: 74  LLDAFYYE--NNLWILIEFCAGGAVDAVMLEL--ERPLTESQIQVVCKQTLDALNYLHDN 129

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSV-------AAANLSVET 353
                ++ +    NI    D   KL+ +G +     T     S        A   +  ET
Sbjct: 130 K---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCET 186

Query: 354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADDCRLSLIMD 412
            +      K++VWS GI L+E+          +P      + K   P LA   R S    
Sbjct: 187 SKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWS---- 242

Query: 413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
              K            D   +CL+K    R T   + +
Sbjct: 243 SNFK------------DFLKKCLEKNVDARWTTSQLLQ 268

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 2e-35
 Identities = 59/308 (19%), Positives = 117/308 (37%), Gaps = 42/308 (13%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLAS 232
           ++      I EG    + +A          + +A + R+    S    ++F  ++  L  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKAR---IKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCK 66

Query: 233 L-QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR-------------SDGPPI 278
           L  HPN+  LLG     G     L  E   HG+L   +                S    +
Sbjct: 67  LGHHPNIINLLGACEHRG--YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTL 124

Query: 279 DWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD 338
                +  A   A+G+ +L ++     ++ + +  NI + +++ AK++ +G +       
Sbjct: 125 SSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYV 181

Query: 339 ISNSSVAAAN-LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWS 397
                      +++E+L   + T  S+VWS+G++L E+++         P       +  
Sbjct: 182 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG-----GTPYCGMTCAELY 236

Query: 398 RPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR-QE 456
                        +    +   PL     V D+  +C +++P ERP+   I   L+R  E
Sbjct: 237 E-----------KLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 285

Query: 457 SRKSSSST 464
            RK+  +T
Sbjct: 286 ERKTYVNT 293

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 2e-35
 Identities = 50/279 (17%), Positives = 108/279 (38%), Gaps = 29/279 (10%)

Query: 181 RCISEGLSSVMYRASF-GDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
           + +  G    +Y+  +  +             R   S +  KE +++   +AS+ +P++C
Sbjct: 15  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 74

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           +LLG      +    LI + +  G L  L Y R     I     +   +  A+G+ +L +
Sbjct: 75  RLLGICL---TSTVQLITQLMPFGCL--LDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 129

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAA----ANLSVETLE 355
                 ++ + +  N+ +      K++ +G A  +   +    +         +++E++ 
Sbjct: 130 RRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL 186

Query: 356 RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL 415
             + T +S+VWS+G+ + EL+T         P  E                +S I++   
Sbjct: 187 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----------------ISSILEKGE 230

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
           +   P      V  I ++C   +   RP  R +  E  +
Sbjct: 231 RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSK 269

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 4e-35
 Identities = 51/307 (16%), Positives = 111/307 (36%), Gaps = 41/307 (13%)

Query: 165 FPLDEVAAACHNFFS---------DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP 215
           F  ++   A   F           ++ I  G    +                    +   
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 216 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG 275
           + +  ++F+++ + +    HPN+  L G   +      M+I E + +GSLD   + R + 
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS--TPVMIITEFMENGSLDS--FLRQND 122

Query: 276 PPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP 335
                   V +    A G+ +L +      ++ + +  NI ++ +   K+S +G +  + 
Sbjct: 123 GQFTVIQLVGMLRGIAAGMKYLADMNY---VHRDLAARNILVNSNLVCKVSDFGLSRFLE 179

Query: 336 ETDISNSSVAAAN-------LSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHP 387
           +     +  +A          + E ++    T  S+VWS+GIV+ E+++ G +       
Sbjct: 180 DDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN 239

Query: 388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS 447
           ++  N ++                        P+     +  + L C QK+ + RP    
Sbjct: 240 QDVINAIEQDYRL-----------------PPPMDCPSALHQLMLDCWQKDRNHRPKFGQ 282

Query: 448 IFEELDR 454
           I   LD+
Sbjct: 283 IVNTLDK 289

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 6e-35
 Identities = 53/281 (18%), Positives = 105/281 (37%), Gaps = 34/281 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP----SSQGVKEFINDVNTLASLQHP 236
             + +G   V+ R  +  DA + K     V  L P      + + +FI +VN + SL H 
Sbjct: 14  EKLGDGSFGVVRRGEW--DAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 71

Query: 237 NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           NL +L G      +    ++ E    GSL   +            T  + A+  A+G+ +
Sbjct: 72  NLIRLYGVVL---TPPMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGY 126

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVE---- 352
           L  +     ++ + +  N+ +      K+  +G    +P+ D          +       
Sbjct: 127 LESKRF---IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAP 183

Query: 353 -TLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
            +L+    +  S+ W FG+ L E+ T       + P    N  +       +  RL    
Sbjct: 184 ESLKTRTFSHASDTWMFGVTLWEMFTYG-----QEPWIGLNGSQILHKIDKEGERLP--- 235

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                   P    + + ++ ++C   +P +RPT  ++ + L
Sbjct: 236 -------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFL 269

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 7e-35
 Identities = 40/283 (14%), Positives = 105/283 (37%), Gaps = 36/283 (12%)

Query: 178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASLQH 235
            +D  +  G    + +          K+ +  +  L   +     +E + +   +  L +
Sbjct: 12  IADIELGCGNFGSVRQGV---YRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDN 68

Query: 236 PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT 295
           P + +L+G      ++  ML+ E    G L + + G+     I  +   ++    + G+ 
Sbjct: 69  PYIVRLIGVCQ---AEALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMK 123

Query: 296 FLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVET-- 353
           +L E+     ++ + +  N+ +     AK+S +G +  +   D   ++ +A    ++   
Sbjct: 124 YLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYA 180

Query: 354 ---LERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSL 409
              +     + +S+VWS+G+ + E L+ G+K        E    ++  +           
Sbjct: 181 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRM--------- 231

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                     P +    +  +   C   +  +RP   ++ + +
Sbjct: 232 --------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM 266

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 7e-35
 Identities = 46/279 (16%), Positives = 101/279 (36%), Gaps = 31/279 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           RCI EG    +++  +    + +        +   S    ++F+ +  T+    HP++ K
Sbjct: 13  RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 72

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L+G    +      +I E    G L   +  R     +D  + +  A   +  L +L  +
Sbjct: 73  LIGVITEN---PVWIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK 127

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAA---ANLSVETLERG 357
                ++ + +  N+ +  +   KL  +G + ++ ++    +S        ++ E++   
Sbjct: 128 R---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFR 184

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMDPQL 415
             T  S+VW FG+ + E+L             +    +    R  +  +C       P L
Sbjct: 185 RFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNC------PPTL 238

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                         +  +C   +PS RP    +  +L  
Sbjct: 239 Y------------SLMTKCWAYDPSRRPRFTELKAQLST 265

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 3e-34
 Identities = 48/277 (17%), Positives = 90/277 (32%), Gaps = 28/277 (10%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLC 239
             I  G      +       S  K            ++  K+  +++VN L  L+HPN+ 
Sbjct: 10  YTIGTGSYGRCQKI---RRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV 66

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIY-GRSDGPPIDWNTRVKIALCAAQGLTFLH 298
           +         +    ++ E    G L  +I  G  +   +D    +++       L   H
Sbjct: 67  RYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH 126

Query: 299 EEGPFQA--MYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAA--ANLSVETL 354
                    ++ +   AN+ +D   + KL  +G A  +        +       +S E +
Sbjct: 127 RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQM 186

Query: 355 ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-ERNLVKWSRPFLADDCRLSLIMDP 413
            R     KS++WS G +L EL        +   KE    + +     +            
Sbjct: 187 NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRY------SD 240

Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           +L             +I  R L  +   RP++  I E
Sbjct: 241 ELN------------EIITRMLNLKDYHRPSVEEILE 265

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-34
 Identities = 50/294 (17%), Positives = 112/294 (38%), Gaps = 33/294 (11%)

Query: 168 DEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFIN 225
            E+  +C      + I  G    +Y+      +   +   A +  L    + +   +F+ 
Sbjct: 2   TEIHPSC--VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVA-IKTLKAGYTEKQRVDFLG 58

Query: 226 DVNTLASLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVK 285
           +   +    H N+ +L G  ++      M+I E + +G+LD+  + R           V 
Sbjct: 59  EAGIMGQFSHHNIIRLEGVISKY--KPMMIITEYMENGALDK--FLREKDGEFSVLQLVG 114

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA 345
           +    A G+ +L        ++ + +  NI ++ +   K+S +G +  + +   +  + +
Sbjct: 115 MLRGIAAGMKYLANMNY---VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTS 171

Query: 346 AANLSV-----ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPF 400
              + +     E +     T  S+VWSFGIV+ E++T  +         E          
Sbjct: 172 GGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE---------- 221

Query: 401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                 +   ++   +   P+     +  + ++C Q+E + RP    I   LD+
Sbjct: 222 ------VMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 269

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 5e-34
 Identities = 41/282 (14%), Positives = 97/282 (34%), Gaps = 34/282 (12%)

Query: 178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHP 236
             D+ +  G    + +  +       K     + +   +      E + + N +  L +P
Sbjct: 10  LEDKELGSGNFGTVKKGYYQMK-KVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNP 68

Query: 237 NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
            + +++G    +     ML+ E    G L++ +        +     +++    + G+ +
Sbjct: 69  YIVRMIGICEAES---WMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKY 122

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV----- 351
           L E      ++ + +  N+ +     AK+S +G +  +   +    +       V     
Sbjct: 123 LEESNF---VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAP 179

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI 410
           E +     + KS+VWSFG+++ E  + G+K        E   +++               
Sbjct: 180 ECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERM---------- 229

Query: 411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEEL 452
                    P    R + D+   C   +   RP   ++   L
Sbjct: 230 -------GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL 264

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  127 bits (319), Expect = 8e-34
 Identities = 58/281 (20%), Positives = 103/281 (36%), Gaps = 37/281 (13%)

Query: 177 FFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS----QGVKEFINDVNTLA 231
            FSD R I  G    +Y A    D   S+     + +++ S     +  ++ I +V  L 
Sbjct: 16  LFSDLREIGHGSFGAVYFAR---DVRNSEVV--AIKKMSYSGKQSNEKWQDIIKEVRFLQ 70

Query: 232 SLQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAA 291
            L+HPN  +  G + R+      L+ E     + D L   +    P+       +   A 
Sbjct: 71  KLRHPNTIQYRGCYLRE--HTAWLVMEYCLGSASDLLEVHKK---PLQEVEIAAVTHGAL 125

Query: 292 QGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA-AANLS 350
           QGL +LH       ++ +    NI + +    KL  +G A  +   +    +    A   
Sbjct: 126 QGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEV 182

Query: 351 VETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADDCRLSL 409
           +  ++ G    K +VWS GI  +EL   +  L + +      ++ +   P L        
Sbjct: 183 ILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGH---- 238

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                 +            +    CLQK P +RPT   + +
Sbjct: 239 -WSEYFR------------NFVDSCLQKIPQDRPTSEVLLK 266

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 4e-33
 Identities = 51/274 (18%), Positives = 102/274 (37%), Gaps = 35/274 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQGVKEFINDVNTLASLQHP 236
           R + +G    +Y A    +  +       +  L  +    +    +   +V   + L+HP
Sbjct: 12  RPLGKGKFGNVYLAR---EKQSKFIL--ALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66

Query: 237 NLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
           N+ +L G+       +  LI E    G++ R +   S     D           A  L++
Sbjct: 67  NILRLYGYFHDA--TRVYLILEYAPLGTVYRELQKLS---KFDEQRTATYITELANALSY 121

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER 356
            H +     ++ +    N+ +      K++ +G + H P +  +        L  E +E 
Sbjct: 122 CHSKRV---IHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEG 178

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
            +   K ++WS G++  E L G+                   PF A+  + +     +++
Sbjct: 179 RMHDEKVDLWSLGVLCYEFLVGK------------------PPFEANTYQETYKRISRVE 220

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
             FP        D+  R L+  PS+RP +R + E
Sbjct: 221 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 254

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 6e-33
 Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 32/273 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLC 239
             I +G S  +Y A    D +T ++    + ++N   Q  KE  IN++  +   ++PN+ 
Sbjct: 26  EKIGQGASGTVYTAM---DVATGQEV--AIRQMNLQQQPKKELIINEILVMRENKNPNIV 80

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
             L  +     D+  ++ E L  GSL  ++        +D      +     Q L FLH 
Sbjct: 81  NYLDSYLVG--DELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHS 134

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN--LSVETLERG 357
                 ++ +  + NI +  D S KL+ +G    I       S++      ++ E + R 
Sbjct: 135 NQV---IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 191

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG 417
              PK ++WS GI+ +E++ G     + +P     L+                 +   + 
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLI---------------ATNGTPEL 236

Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           + P K +    D   RCL  +  +R + + + +
Sbjct: 237 QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-32
 Identities = 52/302 (17%), Positives = 104/302 (34%), Gaps = 47/302 (15%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASL-QHPN 237
           + +  G    +  A+    + T    +  V  L   +     +  ++++  +  L  H N
Sbjct: 43  KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN 102

Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR--------------------SDGPP 277
           +  LLG           LI+E   +G L   +  +                     D   
Sbjct: 103 IVNLLGACTLS--GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNV 160

Query: 278 IDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPET 337
           + +   +  A   A+G+ FL  +     ++ + +  N+ +      K+  +G A  I   
Sbjct: 161 LTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSD 217

Query: 338 D----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL 393
                  N+ +    ++ E+L  G+ T KS+VWS+GI+L E+ +   N     P +    
Sbjct: 218 SNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN-- 275

Query: 394 VKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
                           ++    K   P  A   +  I   C   +  +RP+  ++   L 
Sbjct: 276 -------------FYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322

Query: 454 RQ 455
            Q
Sbjct: 323 CQ 324

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 3e-32
 Identities = 55/294 (18%), Positives = 111/294 (37%), Gaps = 34/294 (11%)

Query: 175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLAS 232
                 R + +G   ++Y            +    +  +N   S +   EF+N+ + +  
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 233 LQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDG-------PPIDWNTRVK 285
               ++ +LLG  ++      ++I E +  G L   +              P   +  ++
Sbjct: 80  FNCHHVVRLLGVVSQG--QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQ 137

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSS-- 343
           +A   A G+ +L+       ++ + +  N  + +DF+ K+  +G    I ETD       
Sbjct: 138 MAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 194

Query: 344 --VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL 401
             +    +S E+L+ G+ T  S+VWSFG+VL E+ T         P +  +  +      
Sbjct: 195 GLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLA-----EQPYQGLSNEQV----- 244

Query: 402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ 455
                L  +M+  L    P      + ++   C Q  P  RP+   I   +  +
Sbjct: 245 -----LRFVMEGGLL-DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 292

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-31
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 37/293 (12%)

Query: 181 RCISEGLSSVMYRASF--GDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           + +  G    +  A     D  +T +     + +   +    +  ++++  L  + H   
Sbjct: 19  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGP-------------PIDWNTRVK 285
              L           M+I E    G+L   +  + +                +     + 
Sbjct: 79  VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 138

Query: 286 IALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETD----ISN 341
            +   A+G+ FL        ++ + +  NI + +    K+  +G A  I +        +
Sbjct: 139 YSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 195

Query: 342 SSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL 401
           + +    ++ ET+   + T +S+VWSFG++L E+ +         P     + +     L
Sbjct: 196 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG-----ASPYPGVKIDEEFCRRL 250

Query: 402 ADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
            +  R+          R P      +    L C   EPS+RPT   + E L  
Sbjct: 251 KEGTRM----------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 293

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 8e-31
 Identities = 55/296 (18%), Positives = 111/296 (37%), Gaps = 43/296 (14%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVT----RLNPSSQGVKEFINDVNTLASL-QH 235
           + + EG    +  A               V     + + + + + + I+++  +  + +H
Sbjct: 19  KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78

Query: 236 PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGR-------------SDGPPIDWNT 282
            N+  LLG   +D      +I E    G+L   +  R             +    +    
Sbjct: 79  KNIINLLGACTQD--GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 136

Query: 283 RVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNS 342
            V  A   A+G+ +L  +     ++ + +  N+ + +D   K++ +G A  I   D    
Sbjct: 137 LVSCAYQVARGMEYLASKKC---IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193

Query: 343 S----VAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR 398
           +    +    ++ E L   + T +S+VWSFG++L E+ T   +     P EE        
Sbjct: 194 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-------- 245

Query: 399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                   L  ++    +   P      +  +   C    PS+RPT + + E+LDR
Sbjct: 246 --------LFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 293

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 1e-30
 Identities = 44/275 (16%), Positives = 86/275 (31%), Gaps = 31/275 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           + + EG    +  A    +  T +     +  +  +    +    ++     L H N+ K
Sbjct: 11  QTLGEGAYGEVQLAV---NRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVK 67

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
             G       + + L  E    G L   I        +      +       G+ +LH  
Sbjct: 68  FYGHRREG--NIQYLFLEYCSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI 122

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAA----NLSVETLER 356
           G     + +    N+ +D+  + K+S +G A      +              ++ E L+R
Sbjct: 123 GI---THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 179

Query: 357 G-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQL 415
                   +VWS GIVL  +L G    D      +       +    +  +    +D   
Sbjct: 180 REFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWK---KIDSAP 236

Query: 416 KGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                         +  + L + PS R T+  I +
Sbjct: 237 L------------ALLHKILVENPSARITIPDIKK 259

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 1e-30
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 33/278 (11%)

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEA-TVTRLNPSSQGVKEFINDVNTLASLQHPNL 238
           D  I  G    +Y+     D  T+ +     +     +    + F  +   L  LQHPN+
Sbjct: 14  DIEIGRGSFKTVYKGL---DTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI 70

Query: 239 CKLLGF--HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
            +          G    +L+ E +  G+L   +        +             +GL F
Sbjct: 71  VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQF 127

Query: 297 LHEEGPFQAMYNEFSTANIQI-DKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVETL 354
           LH   P   ++ +    NI I     S K+   G A  +     + + +     ++ E  
Sbjct: 128 LHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLA-TLKRASFAKAVIGTPEFMAPEMY 185

Query: 355 ERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPFLADDCRLSLIMD 412
           E        +V++FG+ +LE+ T            +  R +    +P   D      +  
Sbjct: 186 EEKY-DESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDK-----VAI 239

Query: 413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           P++K            +I   C+++   ER +++ +  
Sbjct: 240 PEVK------------EIIEGCIRQNKDERYSIKDLLN 265

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  111 bits (279), Expect = 6e-28
 Identities = 51/273 (18%), Positives = 95/273 (34%), Gaps = 28/273 (10%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             +  G   V++R +   + +T   F A    + P     +    ++ T++ L+HP L  
Sbjct: 32  EELGTGAFGVVHRVT---ERATGNNF-AAKFVMTPHESDKETVRKEIQTMSVLRHPTLVN 87

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L      D   + ++IYE +  G L   +        +  +  V+      +GL  +HE 
Sbjct: 88  LHDAFEDDN--EMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCKGLCHMHEN 143

Query: 301 GPFQAMYNEFSTANIQIDKDFS--AKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERG 357
                ++ +    NI      S   KL  +G   H+        +   A   + E  E  
Sbjct: 144 NY---VHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGK 200

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG 417
            +   +++WS G++   LL+G       +  E    VK     + D     +      K 
Sbjct: 201 PVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGI--SEDGK- 257

Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                      D   + L  +P+ R T+    E
Sbjct: 258 -----------DFIRKLLLADPNTRMTIHQALE 279

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 9e-28
 Identities = 41/298 (13%), Positives = 98/298 (32%), Gaps = 35/298 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             +  G   +++R     + S+ K +      +            +++ L   +H N+  
Sbjct: 11  EDLGRGEFGIVHRCV---ETSSKKTY--MAKFVKVKGTDQVLVKKEISILNIARHRNILH 65

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L         ++ ++I+E +    +   I   +    ++    V       + L FLH  
Sbjct: 66  LHESFESM--EELVMIFEFISGLDIFERI--NTSAFELNEREIVSYVHQVCEALQFLHSH 121

Query: 301 GPFQAMYNEFSTANIQIDKDFSA--KLSGYGCAGHIPETDISNSS-VAAANLSVETLERG 357
                 + +    NI      S+  K+  +G A  +   D       A    + E  +  
Sbjct: 122 NI---GHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHD 178

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG 417
           +++  +++WS G ++  LL+G     +   ++    +  +     ++    +    +   
Sbjct: 179 VVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEI--SIEAM- 235

Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIF------EELDRQESRKSSSSTVRRAS 469
                      D   R L KE   R T           ++++R  ++   +   RR  
Sbjct: 236 -----------DFVDRLLVKERKSRMTASEALQHPWLKQKIERVSTKVIRTLKHRRYY 282

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  108 bits (272), Expect = 6e-27
 Identities = 58/273 (21%), Positives = 101/273 (36%), Gaps = 28/273 (10%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             +  G   V++R     + +T + F A      P         N+++ +  L HP L  
Sbjct: 35  EELGSGAFGVVHRCV---EKATGRVFVAKFIN-TPYPLDKYTVKNEISIMNQLHHPKLIN 90

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L          + +LI E L  G L   I   ++   +     +     A +GL  +HE 
Sbjct: 91  LHDAFEDK--YEMVLILEFLSGGELFDRI--AAEDYKMSEAEVINYMRQACEGLKHMHEH 146

Query: 301 GPFQAMYNEFSTANIQID--KDFSAKLSGYGCAGHIPETDISNSSVA-AANLSVETLERG 357
                ++ +    NI  +  K  S K+  +G A  +   +I   + A A   + E ++R 
Sbjct: 147 SI---VHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDRE 203

Query: 358 LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKG 417
            +   +++W+ G++   LL+G          E    VK       +D   S+   P+ K 
Sbjct: 204 PVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSV--SPEAK- 260

Query: 418 RFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                      D     LQKEP +R T+    E
Sbjct: 261 -----------DFIKNLLQKEPRKRLTVHDALE 282

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 1e-26
 Identities = 45/284 (15%), Positives = 95/284 (33%), Gaps = 35/284 (12%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASL 233
           +F   + + EG  S +  A    + +TS+++   +           V     + + ++ L
Sbjct: 9   DFKFGKILGEGSFSTVVLAR---ELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL 65

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
            HP   KL      D  ++         +G L + I         D              
Sbjct: 66  DHPFFVKLYFTFQDD--EKLYFGLSYAKNGELLKYIR---KIGSFDETCTRFYTAEIVSA 120

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN----L 349
           L +LH +     ++ +    NI +++D   +++ +G A  +        + +       +
Sbjct: 121 LEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYV 177

Query: 350 SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL 409
           S E L        S++W+ G ++ +L+ G                    PF A +  L  
Sbjct: 178 SPELLTEKSACKSSDLWALGCIIYQLVAGL------------------PPFRAGNEYLIF 219

Query: 410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
               +L+  FP K      D+  + L  + ++R     +     
Sbjct: 220 QKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGP 263

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  104 bits (261), Expect = 6e-26
 Identities = 44/294 (14%), Positives = 96/294 (32%), Gaps = 45/294 (15%)

Query: 177 FFSD----RCISEGLSSVMYRASFGDDASTSKKF--------EATVTRLNPSSQGVKEFI 224
           F+ +      +  G+SSV+ R        T K++                   +  +  +
Sbjct: 1   FYENYEPKEILGRGVSSVVRRCI---HKPTCKEYAVKIIDVTGGGSFSAEEVQELREATL 57

Query: 225 NDVNTLASLQ-HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTR 283
            +V+ L  +  HPN+ +L   +  + +    L+++ +  G L   +  +     +     
Sbjct: 58  KEVDILRKVSGHPNIIQLKDTY--ETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKET 112

Query: 284 VKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSS 343
            KI     + +  LH+      ++ +    NI +D D + KL+ +G +  +   +     
Sbjct: 113 RKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 169

Query: 344 VAAAN-------LSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW 396
               +                    + ++WS G+++  LL G      R       ++  
Sbjct: 170 CGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMS 229

Query: 397 SRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
                          + Q         + TV D+  R L  +P +R T      
Sbjct: 230 G--------------NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 8e-26
 Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 23/271 (8%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             +  G  S +  A    D  T K                    N++  L  ++HPN+  
Sbjct: 15  DVLGTGAFSEVILAE---DKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVA 71

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
           L   +         LI + +  G L   I  +            ++       + +LH+ 
Sbjct: 72  LDDIYESG--GHLYLIMQLVSGGELFDRIVEK---GFYTERDASRLIFQVLDAVKYLHDL 126

Query: 301 GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVETLERGLL 359
           G         +     +D+D    +S +G +       + +++      ++ E L +   
Sbjct: 127 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPY 186

Query: 360 TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRF 419
           +   + WS G++   LL G       +  +    +  +              + +    +
Sbjct: 187 SKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKA--------------EYEFDSPY 232

Query: 420 PLKAARTVADIALRCLQKEPSERPTMRSIFE 450
               + +  D     ++K+P +R T     +
Sbjct: 233 WDDISDSAKDFIRHLMEKDPEKRFTCEQALQ 263

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 9e-26
 Identities = 51/300 (17%), Positives = 103/300 (34%), Gaps = 33/300 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS------QGVKEFINDVNTLASLQ 234
             I EG    +++A    D     +F A + R+   +            +  +  L + +
Sbjct: 13  AEIGEGAYGKVFKAR---DLKNGGRFVA-LKRVRVQTGEEGMPLSTIREVAVLRHLETFE 68

Query: 235 HPNLCKLLGFHARDGSDQR---MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAA 291
           HPN+ +L        +D+     L++E +       L   +   P +   T   +     
Sbjct: 69  HPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLD--KVPEPGVPTETIKDMMFQLL 126

Query: 292 QGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA-AANLS 350
           +GL FLH       ++ +    NI +      KL+ +G A          S V      +
Sbjct: 127 RGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRA 183

Query: 351 VETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-RNLVKWSRPFLADDCRLSL 409
            E L +       ++WS G +  E+   +         ++   ++        +D    +
Sbjct: 184 PEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDV 243

Query: 410 IM--------DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI-----FEELDRQE 456
            +          Q   +F         D+ L+CL   P++R +  S      F++L+R +
Sbjct: 244 ALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK 303

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  103 bits (258), Expect = 1e-25
 Identities = 55/284 (19%), Positives = 99/284 (34%), Gaps = 33/284 (11%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--QGVKEFINDVNTLASLQHPNL 238
             +  G  S ++ A    D    +     V R + +        F  +    A+L HP +
Sbjct: 13  EILGFGGMSEVHLAR---DLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAI 69

Query: 239 CKLLGFHARDGS--DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
             +      +        ++ E +   +L  +++      P+     +++   A Q L F
Sbjct: 70  VAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH---TEGPMTPKRAIEVIADACQALNF 126

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA-----AANLSV 351
            H+ G    ++ +   ANI I    + K+  +G A  I ++  S +  A     A  LS 
Sbjct: 127 SHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSP 183

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
           E      +  +S+V+S G VL E+LTG        P                     +  
Sbjct: 184 EQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQH--------------VRE 229

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERP-TMRSIFEELDR 454
           DP          +  +  + L+ L K P  R  T   +  +L R
Sbjct: 230 DPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR 273

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (262), Expect = 2e-25
 Identities = 40/279 (14%), Positives = 86/279 (30%), Gaps = 26/279 (9%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTS--KKFEATVTRLNPSSQGVKEFINDVNTLASL 233
           +F   R I  G    +Y     D       K  +    ++             ++ +++ 
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 234 QHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
             P +  +         D+   I + +  G L   +   S             A     G
Sbjct: 65  DCPFIVCMSYAFHTP--DKLSFILDLMNGGDLHYHL---SQHGVFSEADMRFYAAEIILG 119

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVET 353
           L  +H       +Y +   ANI +D+    ++S  G A    +     S      ++ E 
Sbjct: 120 LEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV 176

Query: 354 LERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD 412
           L++G+     ++ +S G +L +LL G         K++  + + +               
Sbjct: 177 LQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM------------ 224

Query: 413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE 451
                  P   +  +  +    LQ++ + R        +
Sbjct: 225 ---AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQ 260

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 5e-25
 Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 34/277 (12%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLA-S 232
           +F   + + +G    ++ A       T++ F     + +       V+  + +   L+ +
Sbjct: 3   DFILHKMLGKGSFGKVFLAE---FKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLA 59

Query: 233 LQHPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQ 292
            +HP L  +         +    + E L  G L   I         D +     A     
Sbjct: 60  WEHPFLTHMFCTFQTK--ENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIIL 114

Query: 293 GLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA--AANLS 350
           GL FLH +G    +Y +    NI +DKD   K++ +G        D   ++       ++
Sbjct: 115 GLQFLHSKGI---VYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIA 171

Query: 351 VETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI 410
            E L         + WSFG++L E+L G+     +  +E  + ++   PF          
Sbjct: 172 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWL----- 226

Query: 411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS 447
            + + K            D+ ++   +EP +R  +R 
Sbjct: 227 -EKEAK------------DLLVKLFVREPEKRLGVRG 250

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 7e-25
 Identities = 38/282 (13%), Positives = 81/282 (28%), Gaps = 29/282 (10%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           R I  G    +Y  +   D +  ++    +      ++   +   +      +Q      
Sbjct: 13  RKIGSGSFGDIYLGT---DIAAGEEV--AIKLECVKTK-HPQLHIESKIYKMMQGGVGIP 66

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
            + +   +G D  +++ E L     D               T + +A      + ++H +
Sbjct: 67  TIRWCGAEG-DYNVMVMELLGPSLED---LFNFCSRKFSLKTVLLLADQMISRIEYIHSK 122

Query: 301 G-------PFQAMYNEFSTANIQIDKDF--SAKLSGYGCAGHIPETDISNSSVAAANLSV 351
                   P   +       N+    DF  + K        HIP  +  N +  A   S+
Sbjct: 123 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI 182

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
            T      + + ++ S G VL+    G           +R   +          ++S   
Sbjct: 183 NTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE-----KKMS-TP 236

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD 453
              L   +P       A     C      ++P    + +   
Sbjct: 237 IEVLCKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFR 274

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (241), Expect = 4e-23
 Identities = 49/298 (16%), Positives = 105/298 (35%), Gaps = 40/298 (13%)

Query: 181 RCISEGLSSVMYRASFGDDASTS-----KKFEATVTRLNPSSQGVKEFINDVNTLASLQH 235
             +  G  +V+ +     + ST      K  +   T+ +      ++   +V+ L  +QH
Sbjct: 16  EELGSGQFAVVKKCR---EKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQH 72

Query: 236 PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLT 295
           PN+  L   +  +     +LI E +  G L   +    +   +      +       G+ 
Sbjct: 73  PNVITLHEVY--ENKTDVILILELVAGGELFDFLA---EKESLTEEEATEFLKQILNGVY 127

Query: 296 FLHEEGPFQAMYNEFSTANIQIDKD----FSAKLSGYGCAGHIPETDISNSSVAAAN-LS 350
           +LH     Q  + +    NI +          K+  +G A  I   +   +       ++
Sbjct: 128 YLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA 184

Query: 351 VETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI 410
            E +    L  ++++WS G++   LL+G         +E    V                
Sbjct: 185 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSA-------------- 230

Query: 411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSI-----FEELDRQESRKSSSS 463
           ++ + +  +    +    D   R L K+P +R T++        +  D Q++  S+ S
Sbjct: 231 VNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSSAWS 288

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 96.4 bits (239), Expect = 7e-23
 Identities = 39/288 (13%), Positives = 80/288 (27%), Gaps = 37/288 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           R I EG   V++  +   +   +++      +  P      +  ++  T   L       
Sbjct: 11  RRIGEGSFGVIFEGT---NLLNNQQV---AIKFEPRRSDAPQLRDEYRTYKLLAGCTGIP 64

Query: 241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE 300
            + +  ++G    +L+ + L     D L      G      T    A      +  +HE+
Sbjct: 65  NVYYFGQEG-LHNVLVIDLLGPSLEDLL---DLCGRKFSVKTVAMAAKQMLARVQSIHEK 120

Query: 301 GPFQAMYNEFSTANIQIDKDFS-----AKLSGYGCA---------GHIPETDISNSSVAA 346
                +Y +    N  I +  S       +  +G            HIP  +  N S  A
Sbjct: 121 S---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA 177

Query: 347 ANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR 406
             +S+ T      + + ++ + G V +  L G            +   +          +
Sbjct: 178 RYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGE------K 231

Query: 407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDR 454
                  +L   FP                      P    +     +
Sbjct: 232 KQSTPLRELCAGFP----EEFYKYMHYARNLAFDATPDYDYLQGLFSK 275

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 8e-23
 Identities = 46/285 (16%), Positives = 95/285 (33%), Gaps = 28/285 (9%)

Query: 183 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG----VKEFINDVNTLASLQHPNL 238
           + EG  + +Y+A    D +T++       +L   S+      +  + ++  L  L HPN+
Sbjct: 6   LGEGQFATVYKAR---DKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI 62

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
             LL            L+++ +       +   + +   +  +      L   QGL +LH
Sbjct: 63  IGLLDAFGHK--SNISLVFDFMETDLEVII---KDNSLVLTPSHIKAYMLMTLQGLEYLH 117

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV---ETLE 355
           +      ++ +    N+ +D++   KL+ +G A      + + +                
Sbjct: 118 QHWI---LHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFG 174

Query: 356 RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE-----ERNLVKWSRPFLADDCRLSLI 410
             +     ++W+ G +L ELL     L      +        L   +     D C L   
Sbjct: 175 ARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDY 234

Query: 411 MDPQLKGRFPL-----KAARTVADIALRCLQKEPSERPTMRSIFE 450
           +  +     PL      A   + D+        P  R T     +
Sbjct: 235 VTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 279

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (239), Expect = 1e-22
 Identities = 38/291 (13%), Positives = 86/291 (29%), Gaps = 31/291 (10%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
             I EG   ++  A    D     +               +  + ++  L   +H N+  
Sbjct: 14  SYIGEGAYGMVCSAY---DNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIG 70

Query: 241 LLGFHARDGSDQRMLIY--ERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
           +         +Q   +Y    L    L +L+  +     +  +          +GL ++H
Sbjct: 71  INDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIH 126

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSV-----AAANLSVET 353
                  ++ +   +N+ ++     K+  +G A            +          + E 
Sbjct: 127 SAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI 183

Query: 354 LERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD 412
           +      T   ++WS G +L E+L+ R     +H  ++ N +       + +    +I  
Sbjct: 184 MLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINL 243

Query: 413 PQLKGRFPLKAARTV-------------ADIALRCLQKEPSERPTMRSIFE 450
                   L     V              D+  + L   P +R  +     
Sbjct: 244 KARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 294

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 3e-22
 Identities = 51/290 (17%), Positives = 104/290 (35%), Gaps = 25/290 (8%)

Query: 176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQ 234
           NF     I EG   V+Y+A    +  T +       RL+  ++GV    I +++ L  L 
Sbjct: 3   NFQKVEKIGEGTYGVVYKAR---NKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 59

Query: 235 HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGL 294
           HPN+ KLL       ++ ++ +     H  L + +   +    I             QGL
Sbjct: 60  HPNIVKLLDVIH---TENKLYLVFEFLHQDLKKFMDASALTG-IPLPLIKSYLFQLLQGL 115

Query: 295 TFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV--- 351
            F H     + ++ +    N+ I+ + + KL+ +G A        + +            
Sbjct: 116 AFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE 172

Query: 352 ETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
             L     +   ++WS G +  E++T R         ++   +  +     +     +  
Sbjct: 173 ILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTS 232

Query: 412 DPQLKGRFPLKAARTVA-----------DIALRCLQKEPSERPTMRSIFE 450
            P  K  FP  A +  +            +  + L  +P++R + ++   
Sbjct: 233 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 282

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 93.4 bits (231), Expect = 6e-22
 Identities = 46/285 (16%), Positives = 98/285 (34%), Gaps = 27/285 (9%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGV-KEFINDVNTLASLQHPNLC 239
             I EG   V+Y+A      +  + F     RL    +G+    I +++ L  L+H N+ 
Sbjct: 8   EKIGEGTYGVVYKAQN----NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIV 63

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           KL          + +L++E L       L         ++  T     L    G+ + H+
Sbjct: 64  KLYDVIHTK--KRLVLVFEHLDQDLKKLLDVCEG---GLESVTAKSFLLQLLNGIAYCHD 118

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSV---ETLER 356
                 ++ +    N+ I+++   K++ +G A          +              +  
Sbjct: 119 RRV---LHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS 175

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE-----RNLVKWSRPFLADDCRLS--- 408
              +   ++WS G +  E++ G          ++     R L   +     +   L    
Sbjct: 176 KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYD 235

Query: 409 ---LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
               + +P     F      +  D+  + L+ +P++R T +   E
Sbjct: 236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 1e-21
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 21/252 (8%)

Query: 217 SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR----MLIYERLFHGSLDRLIYGR 272
            Q  +    ++  +  L H N+ +L  F    G  +      L+ + +         +  
Sbjct: 54  LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 113

Query: 273 SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYGCA 331
                +             + L ++H  G     + +    N+ +D D    KL  +G A
Sbjct: 114 RAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSA 170

Query: 332 GHIPETDISNSSVAAA--NLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKE 389
             +   + + S + +               T   +VWS G VL ELL G+         +
Sbjct: 171 KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD 230

Query: 390 ERNLV-----------KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKE 438
           +   +                    + +   I        F  +       +  R L+  
Sbjct: 231 QLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYT 290

Query: 439 PSERPTMRSIFE 450
           P+ R T      
Sbjct: 291 PTARLTPLEACA 302

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.2 bits (231), Expect = 1e-21
 Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 33/275 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNL 238
           R +  G    ++           + +   V +       + V+   ++   L+ + HP +
Sbjct: 10  RTLGTGSFGRVHLIR---SRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFI 66

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
            ++ G        Q  +I + +  G L  L+      P             AA+    L 
Sbjct: 67  IRMWGTFQDA--QQIFMIMDYIEGGELFSLLRKSQRFPNPVA------KFYAAEVCLALE 118

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
                  +Y +    NI +DK+   K++ +G A ++P+   +        ++ E +    
Sbjct: 119 YLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPD-YIAPEVVSTKP 177

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
                + WSFGI++ E+L G       +  +    +  +                    R
Sbjct: 178 YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAEL------------------R 219

Query: 419 FPLKAARTVADIALRCLQKEPSERPT-MRSIFEEL 452
           FP      V D+  R + ++ S+R   +++  E++
Sbjct: 220 FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDV 254

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (229), Expect = 2e-21
 Identities = 41/277 (14%), Positives = 91/277 (32%), Gaps = 28/277 (10%)

Query: 180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
            + +  G++  + +     +  T +KF   +  L    +  +E         + Q P++ 
Sbjct: 17  SQVLGLGINGKVLQIF---NKRTQEKF--ALKMLQDCPKARREV---ELHWRASQCPHIV 68

Query: 240 KLLGF--HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
           +++    +   G    +++ E L  G L   I  R D          +I     + + +L
Sbjct: 69  RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA-FTEREASEIMKSIGEAIQYL 127

Query: 298 HEEGPFQAMYNEFSTANIQIDK---DFSAKLSGYGCAGHIPETDISNSSVAAAN-LSVET 353
           H        + +    N+       +   KL+ +G A      +   +       ++ E 
Sbjct: 128 HSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEV 184

Query: 354 LERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP 413
           L         ++WS G+++  LL G     S H       +K              +   
Sbjct: 185 LGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK----------TRIRMGQY 234

Query: 414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
           +       + +  V  +    L+ EP++R T+     
Sbjct: 235 EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 271

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 7e-20
 Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 33/271 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNL 238
           + + +G    +       + +T + +   + R     +   V   + +   L + +HP L
Sbjct: 11  KLLGKGTFGKVILVR---EKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL 67

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
             L         D+   + E    G L   +   S                    L +LH
Sbjct: 68  TALKYAFQTH--DRLCFVMEYANGGELFFHL---SRERVFTEERARFYGAEIVSALEYLH 122

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA--AANLSVETLER 356
                  +Y +    N+ +DKD   K++ +G          +  +       L+ E LE 
Sbjct: 123 SRDV---VYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED 179

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLK 416
                  + W  G+V+ E++ GR    ++  +    L+                      
Sbjct: 180 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEI----------------- 222

Query: 417 GRFPLKAARTVADIALRCLQKEPSERPTMRS 447
            RFP   +     +    L+K+P +R     
Sbjct: 223 -RFPRTLSPEAKSLLAGLLKKDPKQRLGGGP 252

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 1e-19
 Identities = 40/285 (14%), Positives = 93/285 (32%), Gaps = 23/285 (8%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLC 239
           + +  G    +  A    D  T  K           S+   K    ++  L  ++H N+ 
Sbjct: 24  QPVGSGAYGAVCSAV---DGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVI 80

Query: 240 KLLG-FHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
            LL  F   +  D     Y  L    +   +        +  +    +     +GL ++H
Sbjct: 81  GLLDVFTPDETLDDFTDFY--LVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIH 138

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
             G    ++ +    N+ +++D   K+  +G A                      L    
Sbjct: 139 AAGI---IHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMR 195

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV---------KWSRPFLADDCRLSL 409
            T   ++WS G ++ E++TG+         ++   +         ++ +   +D+ +  +
Sbjct: 196 YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYM 255

Query: 410 IMDPQLKGRFPLKAARTVADIAL----RCLQKEPSERPTMRSIFE 450
              P+L+ +         + +A+    + L  +  +R T      
Sbjct: 256 KGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 300

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 2e-19
 Identities = 43/298 (14%), Positives = 90/298 (30%), Gaps = 37/298 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLC 239
             I +G    +++A       T +K       +    +G     + ++  L  L+H N+ 
Sbjct: 16  AKIGQGTFGEVFKAR---HRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVV 72

Query: 240 KLLGFHARDGS------DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
            L+       S          L+++   H     L            +   ++      G
Sbjct: 73  NLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL---VKFTLSEIKRVMQMLLNG 129

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANL---- 349
           L ++H       ++ +   AN+ I +D   KL+ +G A        S  +     +    
Sbjct: 130 LYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 186

Query: 350 ---SVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV------------ 394
                  L      P  ++W  G ++ E+ T    +     + +  L+            
Sbjct: 187 YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 246

Query: 395 -KWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVA-DIALRCLQKEPSERPTMRSIFE 450
                  L +   L      ++K R         A D+  + L  +P++R        
Sbjct: 247 PNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 304

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 2e-19
 Identities = 47/279 (16%), Positives = 83/279 (29%), Gaps = 43/279 (15%)

Query: 181 RCISEGLSSVMYRASFGDDASTS-----KKFEATVTRLNPSSQGVKEFINDVNTLASLQ- 234
             +  G    +Y        S +     K  E                  +V  L  +  
Sbjct: 10  PLLGSGGFGSVYSGI---RVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS 66

Query: 235 -HPNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQG 293
               + +LL +  R   D  +LI ER             ++   +             + 
Sbjct: 67  GFSGVIRLLDWFERP--DSFVLILERPEPVQDLFDFI--TERGALQEELARSFFWQVLEA 122

Query: 294 LTFLHEEGPFQAMYNEFSTANIQIDKD-FSAKLSGYGCAGHIPETDISNSSVAAANLSVE 352
           +   H  G    ++ +    NI ID +    KL  +G    + +T  ++          E
Sbjct: 123 VRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPE 179

Query: 353 TLE-RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM 411
            +         + VWS GI+L +++ G                    PF  D+     I+
Sbjct: 180 WIRYHRYHGRSAAVWSLGILLYDMVCGD------------------IPFEHDEE----II 217

Query: 412 DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
             Q+   F  + +     +   CL   PS+RPT   I  
Sbjct: 218 RGQVF--FRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 254

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 1e-18
 Identities = 39/278 (14%), Positives = 83/278 (29%), Gaps = 37/278 (13%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATV---TRLNPSSQGVKEFINDVNTLASLQHPN 237
           + +  G    ++         T K +   V     +   ++  +    +   L  ++   
Sbjct: 30  KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 89

Query: 238 LCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFL 297
               L +  +    +  LI + +  G L   +  R      +        +   + +  L
Sbjct: 90  FLVTLHYAFQTE-TKLHLILDYINGGELFTHLSQRERFTEHEVQ------IYVGEIVLAL 142

Query: 298 HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERG 357
                   +Y +    NI +D +    L+ +G +      +   +      +     +  
Sbjct: 143 EHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIV 202

Query: 358 LL-----TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR--LSLI 410
                      + WS G+++ ELLTG                    PF  D  +   + I
Sbjct: 203 RGGDSGHDKAVDWWSLGVLMYELLTGA------------------SPFTVDGEKNSQAEI 244

Query: 411 MDPQLKGRFPL--KAARTVADIALRCLQKEPSERPTMR 446
               LK   P   + +    D+  R L K+P +R    
Sbjct: 245 SRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCG 282

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 1e-18
 Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 27/286 (9%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKE-FINDVNTLASLQHPNLC 239
             I EG    +++A    +  T +       RL+   +GV    + ++  L  L+H N+ 
Sbjct: 8   EKIGEGTYGTVFKAK---NRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIV 64

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
           +L      D   +  L++E       D   Y  S    +D            +GL F H 
Sbjct: 65  RLHDVLHSD--KKLTLVFEFCDQ---DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHS 119

Query: 300 EGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAAN---LSVETLER 356
                 ++ +    N+ I+++   KL+ +G A          S+                
Sbjct: 120 RN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA 176

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE--RNLVKWSRPF----------LADD 404
            L +   ++WS G +  EL    + L   +  ++  + + +               L D 
Sbjct: 177 KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY 236

Query: 405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE 450
               +            K   T  D+    L+  P +R +     +
Sbjct: 237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 5e-18
 Identities = 46/287 (16%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEA-TVTRLNPSSQGVKEFINDVNTLASLQHPNLC 239
             +  G    +  A    D  T  +     ++R   S    K    ++  L  ++H N+ 
Sbjct: 24  SPVGSGAYGSVCAAF---DTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVI 80

Query: 240 KLLGFHARDGS---DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
            LL       S      + +   L    L+ ++  +     +  +    +     +GL +
Sbjct: 81  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKY 136

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLER 356
           +H       ++ +   +N+ +++D   K+  +G A H  +      +          L  
Sbjct: 137 IHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNW 193

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLV------------KWSRPFLADD 404
                  ++WS G ++ ELLTGR         ++  L+            K      A +
Sbjct: 194 MHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARN 253

Query: 405 CRLSLIMDPQLKGRFPLKAARTVA-DIALRCLQKEPSERPTMRSIFE 450
              SL   P++        A  +A D+  + L  +  +R T      
Sbjct: 254 YIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 300

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 81.4 bits (200), Expect = 1e-17
 Identities = 45/294 (15%), Positives = 94/294 (31%), Gaps = 40/294 (13%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLC 239
           R +  G  S ++ A    + + ++K    V  L P  +  K+   ++  L +L+  PN+ 
Sbjct: 41  RKLGRGKYSEVFEAI---NITNNEKV--VVKILKPVKK--KKIKREIKILENLRGGPNII 93

Query: 240 KLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 299
            L        S    L++E + +    +L         +             + L + H 
Sbjct: 94  TLADIVKDPVSRTPALVFEHVNNTDFKQLY------QTLTDYDIRFYMYEILKALDYCHS 147

Query: 300 EGPFQAMYNEFSTANIQID-KDFSAKLSGYGCAGHIPETDISNSSVAAANLSV--ETLER 356
            G    M+ +    N+ ID +    +L  +G A         N  VA+         ++ 
Sbjct: 148 MGI---MHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDY 204

Query: 357 GLLTPKSNVWSFGIVLLELLTGRKNLDSRH---------------PKEERNLVKWSRPFL 401
            +     ++WS G +L  ++  ++     H                     + K++    
Sbjct: 205 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELD 264

Query: 402 ADDCRLSLIMDPQLKGRFPLKAARTVA-----DIALRCLQKEPSERPTMRSIFE 450
                +      +   RF     + +      D   + L+ +   R T R   E
Sbjct: 265 PRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 318

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.3 bits (192), Expect = 2e-16
 Identities = 37/275 (13%), Positives = 86/275 (31%), Gaps = 33/275 (12%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNL 238
           + +  G    +          +   +   +         + ++  +N+   L ++  P L
Sbjct: 47  KTLGTGSFGRVMLVK---HKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFL 103

Query: 239 CKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 298
            KL      +      ++ E +  G +   +                 A        +LH
Sbjct: 104 VKLEFSFKDN--SNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLH 158

Query: 299 EEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGL 358
                  +Y +    N+ ID+    +++ +G A  +     +      A L+ E +    
Sbjct: 159 SLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEA-LAPEIILSKG 214

Query: 359 LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGR 418
                + W+ G+++ E+  G                    PF AD            K R
Sbjct: 215 YNKAVDWWALGVLIYEMAAGY------------------PPFFADQPIQIYEKIVSGKVR 256

Query: 419 FPLKAARTVADIALRCLQKEPSER-PTMRSIFEEL 452
           FP   +  + D+    LQ + ++R   +++   ++
Sbjct: 257 FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 3e-15
 Identities = 42/299 (14%), Positives = 99/299 (33%), Gaps = 40/299 (13%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQG-VKEFINDVNTLASLQHPNLC 239
           + I  G   ++  A    DA   +            +Q   K    ++  +  + H N+ 
Sbjct: 23  KPIGSGAQGIVCAAY---DAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNII 79

Query: 240 KLLGFHARDGS---DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTF 296
            LL       +    Q + +   L   +L ++I        +D      +      G+  
Sbjct: 80  SLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQME-----LDHERMSYLLYQMLCGIKH 134

Query: 297 LHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA-AANLSVETLE 355
           LH       ++ +   +NI +  D + K+  +G A     + +    V      + E + 
Sbjct: 135 LHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVIL 191

Query: 356 RGLLTPKSNVWSFGIVLLELLTGR----------------KNLDSRHPKEERNLVKWSRP 399
                   ++WS G ++ E++  +                + L +  P+  + L    R 
Sbjct: 192 GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRN 251

Query: 400 FLADDCRLSLIMDPQLKGRFPLKAARTVA--------DIALRCLQKEPSERPTMRSIFE 450
           ++ +  + + +  P+L       A             D+  + L  +P++R ++    +
Sbjct: 252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 310

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 47/315 (14%), Positives = 89/315 (28%), Gaps = 51/315 (16%)

Query: 181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCK 240
           R +  G  S ++ A    D   +      +  +       +   +++  L  +   +  K
Sbjct: 19  RKLGWGHFSTVWLAK---DMVNNTHV--AMKIVRGDKVYTEAAEDEIKLLQRVNDADNTK 73

Query: 241 LLGFHAR-----------DGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALC 289
                A             G +   ++      G     +  + +   I      +I+  
Sbjct: 74  EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 133

Query: 290 AAQGLTFLHEEGPFQAM----YNEFSTANIQIDKDFSAKLSGYGCAGHIPETDISNSSVA 345
              GL ++H             N         +     K++  G A    E    NS   
Sbjct: 134 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT-NSIQT 192

Query: 346 AANLSVETLERGLLTPKSNVWSFGIVLLELLTGR------------KNLDSRH------- 386
               S E L        +++WS   ++ EL+TG             K+ D          
Sbjct: 193 REYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLG 252

Query: 387 --PKEERNLVKWSRPFLADDCRLSLIMDPQL---------KGRFPLKAARTVADIALRCL 435
             P       K++R F      L  I   +          K +F    A+ ++D     L
Sbjct: 253 ELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPML 312

Query: 436 QKEPSERPTMRSIFE 450
           Q +P +R     +  
Sbjct: 313 QLDPRKRADAGGLVN 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.49
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.93
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.45
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.66
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.49
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.07
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	94.09

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-55  Score=424.13  Aligned_cols=271  Identities=18%  Similarity=0.327  Sum_probs=208.1

Q ss_pred             CCHHHHHHHhcc---------cccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC
Q 011995          165 FPLDEVAAACHN---------FFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH  235 (473)
Q Consensus       165 ~~~~el~~~~~~---------f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H  235 (473)
                      ++++++..++.+         |+..+.||+|+||+||+|.+..+......++++...........+.|.+|+++|++++|
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H   86 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH   86 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCC
Confidence            455566555544         45568999999999999997654333333344443333445566789999999999999


Q ss_pred             CCcccceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCce
Q 011995          236 PNLCKLLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANI  315 (473)
Q Consensus       236 pnIv~l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NI  315 (473)
                      ||||+++|++...  +.+++|||||++|+|.+++..  ....++|..++.++.||+.||+|||+++   ||||||||+||
T Consensus        87 pnIv~l~g~~~~~--~~~~iv~Ey~~~g~L~~~~~~--~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHrDlKp~NI  159 (299)
T d1jpaa_          87 PNVIHLEGVVTKS--TPVMIITEFMENGSLDSFLRQ--NDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNI  159 (299)
T ss_dssp             TTBCCEEEEECSS--SSCEEEEECCTTEEHHHHHHT--TTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGE
T ss_pred             CCCccEEEEEeeC--CEEEEEEEecCCCcceeeecc--ccCCCCHHHHHHHHHHHHHHHHHHhhCC---CccCccccceE
Confidence            9999999999766  789999999999999998864  3456999999999999999999999999   99999999999


Q ss_pred             eeCCCCcEEEeccCCCcccCCCCc-------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCCh
Q 011995          316 QIDKDFSAKLSGYGCAGHIPETDI-------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHP  387 (473)
Q Consensus       316 Ll~~~~~vkl~DFGla~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~  387 (473)
                      ||+.++.+||+|||+++.+.....       ....+|+.|||||.+.++.++.++|||||||++|||+| |+.||.+...
T Consensus       160 Ll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~  239 (299)
T d1jpaa_         160 LVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN  239 (299)
T ss_dssp             EECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             EECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCH
Confidence            999999999999999987643321       12346789999999999999999999999999999998 8999988766


Q ss_pred             HHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          388 KEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                      .+....+...                 .+...+..++.++.+|+.+||+.||.+|||+.||++.|+++.+..
T Consensus       240 ~~~~~~i~~~-----------------~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p  294 (299)
T d1jpaa_         240 QDVINAIEQD-----------------YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNP  294 (299)
T ss_dssp             HHHHHHHHTT-----------------CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHcC-----------------CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcCh
Confidence            5443333211                 111224456788999999999999999999999999999987643

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-54  Score=410.81  Aligned_cols=247  Identities=20%  Similarity=0.306  Sum_probs=210.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||+||+|+...+   ...+++|+....  ........+.+|+++|+.++|||||++++++.++  +.
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~---~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--~~   80 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQS---KFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA--TR   80 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS--SE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCC---CcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEEC--CE
Confidence            6799999999999999999996543   355666665432  1233456789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .|||||||++|+|.+++...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||++.
T Consensus        81 ~~ivmEy~~~g~L~~~l~~~---~~l~e~~~~~i~~qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~~kl~DFG~a~  154 (263)
T d2j4za1          81 VYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSV  154 (263)
T ss_dssp             EEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCSCS
T ss_pred             EEEEEeecCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeeeeccccceecCCCCEeecccceee
Confidence            99999999999999999543   46999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...........||+.|||||++.+..++.++|||||||++|||++|+.||.+....+....+....              
T Consensus       155 ~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~--------------  220 (263)
T d2j4za1         155 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVE--------------  220 (263)
T ss_dssp             CCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTC--------------
T ss_pred             ecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--------------
Confidence            877666667789999999999999999999999999999999999999998876555443332111              


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          ..++..++.++.+|+.+||+.||.+|||++|+++
T Consensus       221 ----~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         221 ----FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             ----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ----CCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence                1124456688999999999999999999999986

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-54  Score=411.62  Aligned_cols=258  Identities=19%  Similarity=0.337  Sum_probs=205.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC-CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|...+.||+|+||+||+|++.+      .+++|+.+.. ......+.|.+|+++|++++|||||+++|++..   +.+
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~~------~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~---~~~   78 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWHG------DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA---PQL   78 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESSS------EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS---SSC
T ss_pred             ccEEEEEEEeeCCCcEEEEEEECC------EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec---cEE
Confidence            578889999999999999998543      2456655443 245567889999999999999999999998753   568


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +||||||++|+|.+++...  ...+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.
T Consensus        79 ~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~gl~yLH~~~---ivHrDlKp~NiLl~~~~~~Kl~DFGla~~  153 (276)
T d1uwha_          79 AIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV  153 (276)
T ss_dssp             EEEEECCCEEEHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTSSEEECCCCCSCC
T ss_pred             EEEEecCCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHhcCC---EeccccCHHHEEEcCCCCEEEccccceee
Confidence            9999999999999999643  346999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCC----CccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          334 IPET----DISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       334 ~~~~----~~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      ....    ......+|+.|||||++.+   +.|+.++|||||||++|||+||+.||.+..............        
T Consensus       154 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~--------  225 (276)
T d1uwha_         154 KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRG--------  225 (276)
T ss_dssp             ------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHT--------
T ss_pred             ccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcC--------
Confidence            6432    2234578999999999964   347899999999999999999999998765544322111100        


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                         ...+.+ ...+.+++.++.+|+.+||+.||.+|||+.||++.|+.+...
T Consensus       226 ---~~~p~~-~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         226 ---YLSPDL-SKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             ---SCCCCG-GGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ---CCCCcc-hhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence               001110 112445668899999999999999999999999999988753

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-53  Score=407.07  Aligned_cols=254  Identities=19%  Similarity=0.341  Sum_probs=200.9

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||+||+|.+.++.    .+++  |.+.......++|.+|++++++++|||||+++|+|..+  +..+
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~----~vAv--K~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~--~~~~   76 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKD----KVAI--KTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ--APIC   76 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTE----EEEE--EECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SSCE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCC----EEEE--EEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccC--CceE
Confidence            47888899999999999999986542    3344  44444555667899999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+++..
T Consensus        77 lv~E~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qia~gl~~lH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  151 (263)
T d1sm2a_          77 LVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV  151 (263)
T ss_dssp             EEEECCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCTTCSGGGEEECGGGCEEECSCC-----
T ss_pred             EEEEecCCCcHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHhhhccc---eeecccchhheeecCCCCeEecccchheec
Confidence            999999999999998643  456899999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....   ....+|+.|||||++.+..++.++|||||||++|||+| |.+||......+....+...             
T Consensus       152 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~-------------  218 (263)
T d1sm2a_         152 LDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG-------------  218 (263)
T ss_dssp             -------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHT-------------
T ss_pred             cCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhc-------------
Confidence            54332   23467899999999999999999999999999999999 56666655544333322211             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                          .+...+..++.++.+|+.+||+.||++|||++||++.|+++.+.
T Consensus       219 ----~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         219 ----FRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             ----CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ----CCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence                01112344567899999999999999999999999999998653

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-54  Score=410.79  Aligned_cols=251  Identities=17%  Similarity=0.164  Sum_probs=202.1

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||+||+|+...+   ++.+|+|+..........+.+.+|+++|++++|||||++++++.++  +..
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~---~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~--~~~   78 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVT---EEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG--NIQ   78 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEET--TEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCC---CCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccC--cee
Confidence            46899999999999999999996543   4566777776554445567899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ||||||+++|+|.+++..   ...+++..+..++.||+.||+|||+++   ||||||||+|||++.++.+||+|||+|+.
T Consensus        79 ~ivmEy~~gg~L~~~l~~---~~~l~e~~~~~i~~qi~~al~ylH~~~---IiHrDiKp~NILl~~~~~~KL~DFG~a~~  152 (271)
T d1nvra_          79 YLFLEYCSGGELFDRIEP---DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV  152 (271)
T ss_dssp             EEEEECCTTEEGGGGSBT---TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEeccCCCcHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHcC---CccCcccHHHEEECCCCCEEEccchhhee
Confidence            999999999999999943   346999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCC----CccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPET----DISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~----~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ....    .....+||+.|||||++.+..+ +.++|||||||++|||++|+.||...............           
T Consensus       153 ~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~-----------  221 (271)
T d1nvra_         153 FRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE-----------  221 (271)
T ss_dssp             CEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHT-----------
T ss_pred             eccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhc-----------
Confidence            6432    2345679999999999988776 57899999999999999999999765432221111000           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                          ..........++.++.+|+.+||+.||++|||++|+++
T Consensus       222 ----~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         222 ----KKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             ----TCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ----CCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                00000112345688899999999999999999999976

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-53  Score=411.66  Aligned_cols=259  Identities=18%  Similarity=0.298  Sum_probs=211.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||+||+|.+.++   ...+|+|+  +.......++|.+|+++|++++|||||+++|+|.++  +..
T Consensus        16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~---~~~vAvK~--i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--~~~   88 (287)
T d1opja_          16 RTDITMKHKLGGGQYGEVYEGVWKKY---SLTVAVKT--LKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE--PPF   88 (287)
T ss_dssp             GGGEEEEEETTTTTTSSEEEEEEGGG---TEEEEEEE--CCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SSC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCC---CeEEEEEE--ECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeC--Cee
Confidence            45788889999999999999996543   34444544  444445567899999999999999999999999766  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +|||||+++|+|.+++... ....+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.
T Consensus        89 ~iv~E~~~~g~l~~~l~~~-~~~~~~~~~~~~i~~qi~~gL~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFG~a~~  164 (287)
T d1opja_          89 YIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRL  164 (287)
T ss_dssp             EEEEECCTTCBHHHHHHHS-CTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCCTTT
T ss_pred             EEEeecccCcchHHHhhhc-cccchHHHHHHHHHHHHHHHHHHHHHCC---cccCccccCeEEECCCCcEEEccccceee
Confidence            9999999999999999654 3457999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCC-CCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNL-DSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ......   ....+++.|||||++.++.++.++|||||||++|||++|..|| .+.........+..             
T Consensus       165 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~-------------  231 (287)
T d1opja_         165 MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK-------------  231 (287)
T ss_dssp             CCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHT-------------
T ss_pred             cCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhc-------------
Confidence            754432   2335678999999999999999999999999999999976655 44333332222211             


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                          .....++..++.++.+|+.+||+.||.+|||+.+|++.|+.+.+..+
T Consensus       232 ----~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~~~  278 (287)
T d1opja_         232 ----DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS  278 (287)
T ss_dssp             ----TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSSSC
T ss_pred             ----CCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhCC
Confidence                11122345567889999999999999999999999999998876544

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-54  Score=420.61  Aligned_cols=272  Identities=20%  Similarity=0.299  Sum_probs=210.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||+||+|....   ++..+|+|+............+.+|+.+|+.++|||||+++++|.++  +.+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~--~~~   79 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKP---SGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD--GEI   79 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETT---TTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECS--SEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECC---CCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--CEE
Confidence            5789999999999999999998644   34667777776655556677899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhc-CCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEE-GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~-~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      |||||||++|+|.+++.+.   ..+++..+..++.|++.||.|||++ +   ||||||||+||||+.++.+||+|||+|+
T Consensus        80 ~iVmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qil~aL~yLH~~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~  153 (322)
T d1s9ja_          80 SICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSG  153 (322)
T ss_dssp             EEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             EEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHhCC---EEccccCHHHeeECCCCCEEEeeCCCcc
Confidence            9999999999999999643   3699999999999999999999974 7   9999999999999999999999999998


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhh-cccccc---------
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKW-SRPFLA---------  402 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~-~~~~~~---------  402 (473)
                      ..........+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+.......... ......         
T Consensus       154 ~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (322)
T d1s9ja_         154 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP  233 (322)
T ss_dssp             HHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------
T ss_pred             ccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccc
Confidence            7755555667899999999999999999999999999999999999999987654322111000 000000         


Q ss_pred             ---------cc-------cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          403 ---------DD-------CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       403 ---------~~-------~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                               +.       .....+.............+.++.+|+.+||+.||.+|||++|+|+.  |++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~  305 (322)
T d1s9ja_         234 GRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD  305 (322)
T ss_dssp             ------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             cccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCC
Confidence                     00       00000000000000012346789999999999999999999999983  55433

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=405.50  Aligned_cols=248  Identities=21%  Similarity=0.308  Sum_probs=207.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||+||+|...   .++..+|+|+..... ....+.+.+|+++|+.++|||||++++++.++  +.+|
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~---~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--~~~~   93 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDV---ATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVG--DELW   93 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBT---TTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET--TEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEEC---CCCCEEEEEEEeccc-ChHHHHHHHHHHHHHhCCCCCEeeEeEEEEEC--CEEE
Confidence            36999999999999999999844   345567777765442 22356789999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||||||++|+|.+++..    ..+++..+..++.||+.||+|||+++   ||||||||+|||++.++.+||+|||+++.+
T Consensus        94 ivmEy~~gg~L~~~~~~----~~l~~~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~vkl~DFG~a~~~  166 (293)
T d1yhwa1          94 VVMEYLAGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (293)
T ss_dssp             EEEECCTTCBHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEecCCCcHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCcHHHeEECCCCcEeeccchhheee
Confidence            99999999999998854    25999999999999999999999999   999999999999999999999999999876


Q ss_pred             CCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ...  ......||+.|||||++.+..++.++|||||||++|||++|+.||.+.........+....              
T Consensus       167 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~--------------  232 (293)
T d1yhwa1         167 TPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNG--------------  232 (293)
T ss_dssp             CSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHC--------------
T ss_pred             ccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCC--------------
Confidence            433  3345579999999999999999999999999999999999999998766554332221100              


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       ......+..++.++.+||.+||+.||.+|||+.|+++
T Consensus       233 -~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         233 -TPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             -SCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             -CCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             0011224456788999999999999999999999986

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-53  Score=405.70  Aligned_cols=254  Identities=21%  Similarity=0.326  Sum_probs=206.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|+..+.||+|+||.||+|.+.++.    .+|+|+  +.......+.|.+|+++|++++|||||+++|++.+   +..
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~----~vAvK~--~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~---~~~   82 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHT----KVAVKS--LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ---EPI   82 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTE----EEEEEE--ECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---SSC
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCC----EEEEEE--EccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc---CCe
Confidence            357888899999999999999986542    344444  44444556789999999999999999999998854   567


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +|||||+++|+|.+++... ....+++..++.|+.||+.||.|||+++   |+||||||+||||+.++.+||+|||+++.
T Consensus        83 ~iv~Ey~~~g~L~~~~~~~-~~~~l~~~~~~~i~~qi~~gl~~lH~~~---ivHrDiKp~NIll~~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          83 YIITEYMENGSLVDFLKTP-SGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARL  158 (272)
T ss_dssp             EEEEECCTTCBHHHHTTSH-HHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccchhheeeecccceeeccccceEE
Confidence            9999999999999987543 2345999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCC-CCCCCCChHHHHhHhhhccccccccccccc
Q 011995          334 IPETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR-KNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       334 ~~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      .....   .....+|+.|||||++.++.++.++|||||||++|||+||. +||......+....+...            
T Consensus       159 ~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~------------  226 (272)
T d1qpca_         159 IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG------------  226 (272)
T ss_dssp             CSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT------------
T ss_pred             ccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhc------------
Confidence            75443   23456788999999999999999999999999999999954 555554443332222110            


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                           .+...+..++.++.+|+.+||+.||++|||+.+|++.|+++..
T Consensus       227 -----~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         227 -----YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----CCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence                 1111244566789999999999999999999999999998764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-52  Score=404.67  Aligned_cols=257  Identities=16%  Similarity=0.279  Sum_probs=209.1

Q ss_pred             cccccCcc-eeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRC-ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~-lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|..... ||+|+||+||+|.+.... ....+|+|+..........++|.+|+++|++++|||||+++|++..   +.+
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~-~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~---~~~   83 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRK-KQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA---EAL   83 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES---SSE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCC-CcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc---CeE
Confidence            45666664 999999999999875432 2234556655544455567889999999999999999999999864   468


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |||||||++|+|.+++..  ....+++..++.++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.
T Consensus        84 ~lvmE~~~~g~L~~~l~~--~~~~l~~~~~~~i~~qi~~gL~ylH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          84 MLVMEMAGGGPLHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             EEEEECCTTEEHHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHhhc--cccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCcCchhheeeccCCceeeccchhhhc
Confidence            999999999999999843  3456999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      +.....     ....+|+.|||||++.++.++.++|||||||++|||+| |+.||.+....+....+...          
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~----------  228 (285)
T d1u59a_         159 LGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG----------  228 (285)
T ss_dssp             CTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTT----------
T ss_pred             ccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcC----------
Confidence            654321     23467889999999999999999999999999999998 99999877655433333211          


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                             .+..++..++.++.+||.+||+.||++|||+.+|++.|+.+..
T Consensus       229 -------~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~  271 (285)
T d1u59a_         229 -------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  271 (285)
T ss_dssp             -------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------CCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence                   0112345567889999999999999999999999999987654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-53  Score=414.41  Aligned_cols=258  Identities=19%  Similarity=0.294  Sum_probs=206.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe--eeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS--TSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|+..+.||+|+||+||+|++.....  ....+++|+............+.+|+.+|.++ +|||||+++|++.+.  +
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~--~  114 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS--G  114 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS--S
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC--C
Confidence            578889999999999999999754433  33444555444334455567899999999998 899999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCC--------------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSD--------------------GPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFS  311 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~--------------------~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlk  311 (473)
                      .++||||||++|+|.++|..+..                    ...+++..++.++.||+.||+|||+++   |||||||
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~---IiHRDlK  191 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLA  191 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCS
T ss_pred             eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCc
Confidence            89999999999999999975421                    245899999999999999999999999   9999999


Q ss_pred             CCceeeCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCC
Q 011995          312 TANIQIDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRH  386 (473)
Q Consensus       312 p~NILl~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~  386 (473)
                      |+|||++.++.+||+|||+|+.......    ....+|+.|||||++.++.++.++|||||||++|||+| |+.||.+..
T Consensus       192 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~  271 (325)
T d1rjba_         192 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  271 (325)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             hhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999987644322    24467899999999999999999999999999999998 899998765


Q ss_pred             hHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 011995          387 PKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELD  453 (473)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~  453 (473)
                      .......+.                ....+...+..++.++.+||.+||+.||++|||++||++.|.
T Consensus       272 ~~~~~~~~~----------------~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         272 VDANFYKLI----------------QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             CSHHHHHHH----------------HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH----------------hcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            433221111                011112235566789999999999999999999999999986

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-52  Score=405.10  Aligned_cols=261  Identities=18%  Similarity=0.310  Sum_probs=203.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ..|+..++||+|+||.||+|.+..+.. ....+++|+...........+|.+|+.+|++++|||||+++|++.+.  +..
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~--~~~   84 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY--KPM   84 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS--SSE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecC--Cce
Confidence            457888999999999999999765432 23345555554444455566899999999999999999999999766  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++||||+.+|+|.+++...  ...++|..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+++.
T Consensus        85 ~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~i~~gl~~lH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          85 MIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             EEEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             EEEEEecccCcchhhhhcc--cccccHHHHHHHHHHHHHhhhhccccc---cccCccccceEEECCCCeEEEcccchhhc
Confidence            9999999999999988543  456999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC-----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCC-CCCCChHHHHhHhhhccccccccccc
Q 011995          334 IPETD-----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKN-LDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       334 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      .....     .....+|+.|||||++.++.++.++|||||||++|||++|..| +......+....+..           
T Consensus       160 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~-----------  228 (283)
T d1mqba_         160 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIND-----------  228 (283)
T ss_dssp             --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHT-----------
T ss_pred             ccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhc-----------
Confidence            64332     1233578899999999999999999999999999999996555 444443332222211           


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                            ..+...+..++..+.+||.+||+.||++||||.||++.|+++.+..
T Consensus       229 ------~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p  274 (283)
T d1mqba_         229 ------GFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  274 (283)
T ss_dssp             ------TCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             ------cCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCc
Confidence                  1112234456688999999999999999999999999999887643

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-53  Score=405.96  Aligned_cols=256  Identities=18%  Similarity=0.245  Sum_probs=198.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|++.+.||+|+||+||+|+...+   ++.+|+|+..... .....+.+.+|+++|++++|||||++++++.+...+.+
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~---~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~   80 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSD---GKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   80 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTT---CCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCC---CCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEE
Confidence            6899999999999999999986543   4566677665543 33445678999999999999999999999876555778


Q ss_pred             EEEEEeccCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHhhhcCC--CceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          254 MLIYERLFHGSLDRLIYGRS-DGPPIDWNTRVKIALCAAQGLTFLHEEGP--FQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~yLH~~~~--~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      |||||||++|+|.+++.... ....+++..+..++.||+.||.|||+++.  .+||||||||+||||+.++.+||+|||+
T Consensus        81 ~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~  160 (269)
T d2java1          81 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL  160 (269)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHH
T ss_pred             EEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccc
Confidence            99999999999999985421 24579999999999999999999998752  2499999999999999999999999999


Q ss_pred             CcccCCCC--ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          331 AGHIPETD--ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       331 a~~~~~~~--~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ++.+....  .....+|+.|||||++.+..++.++|||||||++|||+||+.||.+....+....+....          
T Consensus       161 a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~----------  230 (269)
T d2java1         161 ARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGK----------  230 (269)
T ss_dssp             HHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC----------
T ss_pred             eeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCC----------
Confidence            98775432  245678999999999999999999999999999999999999998766554333222110          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                            . ..++..++.++.+|+.+||+.||.+|||+.||++
T Consensus       231 ------~-~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         231 ------F-RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             ------C-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ------C-CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence                  0 1124456688999999999999999999999985

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-52  Score=394.79  Aligned_cols=251  Identities=16%  Similarity=0.291  Sum_probs=209.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||+||+|+++++    ..+|+|+.+.  .....++|.+|+.++++++|||||+++|+|.++  +.++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~----~~vAvK~l~~--~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~--~~~~   75 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQ----YDVAIKMIKE--GSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--RPIF   75 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTT----EEEEEEEEES--SSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCS--SSEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCC----CEEEEEEECc--CcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeC--CceE
Confidence            5789999999999999999998643    3344554443  344567899999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..+.+++.||++||.|||+++   |+||||||+|||++.++.+||+|||+++..
T Consensus        76 iv~Ey~~~g~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~~LH~~~---iiH~dlk~~Nill~~~~~~kl~DfG~a~~~  150 (258)
T d1k2pa_          76 IITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYV  150 (258)
T ss_dssp             EEEECCTTEEHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHTT---BCCSCCSGGGEEECTTCCEEECCCSSCCBC
T ss_pred             EEEEccCCCcHHHhhhcc--ccCCcHHHHHHHHHHHHHHHHHHhhcC---cccccccceeEEEcCCCcEEECcchhheec
Confidence            999999999999997543  346899999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....   ....+|+.|+|||.+.+..++.++|||||||++|||+| |+.||.+....+....+...             
T Consensus       151 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~-------------  217 (258)
T d1k2pa_         151 LDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG-------------  217 (258)
T ss_dssp             SSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT-------------
T ss_pred             cCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhC-------------
Confidence            54432   23467889999999999999999999999999999998 89999887765543333211             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                          .+...+..++.++.+||.+||+.||++|||+++|++.|.++
T Consensus       218 ----~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         218 ----LRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             ----CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             ----CCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence                01122445568899999999999999999999999999764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-52  Score=405.11  Aligned_cols=251  Identities=20%  Similarity=0.279  Sum_probs=206.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      +.|++.+.||+|+||+||+|....+   +..+|+|+.... .....+.+.+|+++|++++|||||++++++.++  +..+
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~---~~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~~~   85 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKET---SVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYE--NNLW   85 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEECS-SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEET--TEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCC---CeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC--CeEE
Confidence            4588889999999999999996543   345566665433 445568899999999999999999999999876  7899


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      ||||||++|+|.+++...  ...+++..+..++.||+.||.|||+++   ||||||||+||||+.++.+||+|||++...
T Consensus        86 lvmEy~~~g~L~~~~~~~--~~~l~e~~~~~i~~qi~~gL~ylH~~~---ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~  160 (288)
T d2jfla1          86 ILIEFCAGGAVDAVMLEL--ERPLTESQIQVVCKQTLDALNYLHDNK---IIHRDLKAGNILFTLDGDIKLADFGVSAKN  160 (288)
T ss_dssp             EEEECCTTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EEEeecChhheeECCCCCEEEEechhhhcc
Confidence            999999999999987542  346999999999999999999999999   999999999999999999999999999765


Q ss_pred             CCC--CccCcccccccCChhhhh-----cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          335 PET--DISNSSVAAANLSVETLE-----RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       335 ~~~--~~~~~~~t~~y~aPE~~~-----~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      ...  ......||+.|||||++.     +..|+.++|||||||++|||++|+.||.+....+....+....+        
T Consensus       161 ~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~--------  232 (288)
T d2jfla1         161 TRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEP--------  232 (288)
T ss_dssp             HHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCC--------
T ss_pred             CCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCC--------
Confidence            332  234567899999999984     44589999999999999999999999988765544332221100        


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                           +  ....+..++.++.+||.+||+.||.+|||+.|+++.
T Consensus       233 -----~--~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         233 -----P--TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             -----C--CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             -----C--CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                 0  011244567889999999999999999999999873

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-52  Score=397.67  Aligned_cols=249  Identities=16%  Similarity=0.295  Sum_probs=203.4

Q ss_pred             cceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          181 RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      +.||+|+||+||+|.+.+.. +.+.+|+|+..... .....++|.+|+++|++++|||||+++|+|..   +..+|||||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~---~~~~lvmE~   88 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKK-VVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA---ESWMLVMEM   88 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSS-SEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES---SSEEEEEEC
T ss_pred             CCcccCCCeEEEEEEEccCC-cCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc---CCEEEEEEc
Confidence            57999999999999875433 45666777665432 34456789999999999999999999999864   467999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI  339 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~  339 (473)
                      +++|+|.+++...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.+.....
T Consensus        89 ~~~g~L~~~l~~~---~~l~~~~~~~i~~qi~~gl~ylH~~~---iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~  162 (277)
T d1xbba_          89 AELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  162 (277)
T ss_dssp             CTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             CCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHhhHHhCC---cccCCCcchhhcccccCcccccchhhhhhcccccc
Confidence            9999999999643   46999999999999999999999999   99999999999999999999999999987643321


Q ss_pred             -----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          340 -----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       340 -----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                           ....+|+.|||||.+.+..++.++|||||||++|||+| |+.||.+....+....+...                
T Consensus       163 ~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~----------------  226 (277)
T d1xbba_         163 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG----------------  226 (277)
T ss_dssp             EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT----------------
T ss_pred             ccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcC----------------
Confidence                 23467899999999999999999999999999999998 89999887655433333211                


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQE  456 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~  456 (473)
                       .+..++..++.++.+|+.+||+.||++|||+++|++.|+...
T Consensus       227 -~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         227 -ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             -CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             -CCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence             111234556788999999999999999999999999888653

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-52  Score=399.43  Aligned_cols=249  Identities=18%  Similarity=0.230  Sum_probs=199.4

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeec--CCCCceE
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHAR--DGSDQRM  254 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~--~~~~~~~  254 (473)
                      +....||+|+||+||+|....+   ...+++|+..... .....+.|.+|+++|++++|||||++++++.+  .+...+|
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~---~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~   88 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTET---TVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV   88 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTT---CCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCC---CeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEE
Confidence            5567899999999999996543   3455566554432 34456779999999999999999999999864  2335689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC-CCCcEEEeccCCCcc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID-KDFSAKLSGYGCAGH  333 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~-~~~~vkl~DFGla~~  333 (473)
                      |||||+++|+|.+++...   ..+++..+..++.||+.||+|||++++ +||||||||+||||+ .++.+||+|||+++.
T Consensus        89 ivmE~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~gl~yLH~~~~-~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_          89 LVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSSS-CCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEeCCCCCcHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHHCCC-CEEeCCcChhhceeeCCCCCEEEeecCccee
Confidence            999999999999999543   469999999999999999999999863 499999999999996 579999999999987


Q ss_pred             cCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhhhcccccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      ..........||+.|||||++.+ .++.++|||||||++|||++|+.||.+....... ..+...               
T Consensus       165 ~~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~---------------  228 (270)
T d1t4ha_         165 KRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSG---------------  228 (270)
T ss_dssp             CCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTT---------------
T ss_pred             ccCCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcC---------------
Confidence            66655566789999999999865 5999999999999999999999999765443321 111100               


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .....++...+.++.+||.+||+.||++|||+.|+++
T Consensus       229 -~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         229 -VKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             -CCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -CCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence             0001112334567899999999999999999999986

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-52  Score=397.99  Aligned_cols=259  Identities=18%  Similarity=0.313  Sum_probs=203.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||+|++..+......+++++..........+.|.+|+.+|++++|||||+++|++.+   +.++
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~---~~~~   83 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE---NPVW   83 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS---SSCE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CeEE
Confidence            5789999999999999999998665544444555544433445556789999999999999999999999853   6789


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.+++...  ...+++..++.++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+++..
T Consensus        84 iv~E~~~~g~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          84 IIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             EEEECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEeccCCcHHhhhhcc--CCCCCHHHHHHHHHHHHHHhhhhcccC---eeccccchhheeecCCCcEEEccchhheec
Confidence            999999999999987543  356899999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCC---ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETD---ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~---~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....   .....+|+.|+|||++.+..++.++|||||||++|||++ |.+||......+....+...             
T Consensus       159 ~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~-------------  225 (273)
T d1mp8a_         159 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG-------------  225 (273)
T ss_dssp             ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT-------------
T ss_pred             cCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-------------
Confidence            4332   234467899999999999999999999999999999998 89999877655443322211             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                          ....++..++.++.+||.+||..||.+|||+.||++.|+.+.+.
T Consensus       226 ----~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         226 ----ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             ----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence                01123456678899999999999999999999999999987643

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.1e-52  Score=404.59  Aligned_cols=253  Identities=15%  Similarity=0.176  Sum_probs=192.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+.|+..+.||+|+||+||+|....   +.+.+|+|+............+.+|+.+|+.++|||||++++++.++  +.+
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~---~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~--~~~   82 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKR---TQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESG--GHL   82 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETT---TCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECS--SEE
T ss_pred             ccceEEEEEEeeccCeEEEEEEECC---CCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--CEE
Confidence            4669999999999999999998654   34566777766544344456788999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC---CCCcEEEeccCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKLSGYGC  330 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~---~~~~vkl~DFGl  330 (473)
                      |||||||++|+|.++|..   ...+++..+..++.||+.||+|||+++   ||||||||+|||+.   .++.+||+|||+
T Consensus        83 ~lvmE~~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~Nil~~~~~~~~~vkl~DFG~  156 (307)
T d1a06a_          83 YLIMQLVSGGELFDRIVE---KGFYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGL  156 (307)
T ss_dssp             EEEECCCCSCBHHHHHHT---CSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCC--
T ss_pred             EEEEeccCCCcHHHhhhc---ccCCCHHHHHHHHHHHHHHHHhhhhce---eeeEEecccceeecccCCCceEEEeccce
Confidence            999999999999999954   346999999999999999999999999   99999999999994   578999999999


Q ss_pred             CcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          331 AGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       331 a~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      ++...... ....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.........+....           
T Consensus       157 a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~-----------  225 (307)
T d1a06a_         157 SKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAE-----------  225 (307)
T ss_dssp             ----------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTC-----------
T ss_pred             eEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccC-----------
Confidence            98765443 345679999999999999999999999999999999999999998876555433332111           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         ..........++.++.+|+.+||++||++|||+.|+++.
T Consensus       226 ---~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         226 ---YEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             ---CCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ---CCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence               011112234567889999999999999999999999873

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=404.62  Aligned_cols=248  Identities=17%  Similarity=0.206  Sum_probs=205.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||+||+|....   +++.+|+|+.....  .....+.+.+|+++|++++|||||++++++.++  +.
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~---~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~--~~   82 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELA---TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD--EK   82 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECS--SE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECC---CCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEEC--CE
Confidence            679999999999999999998644   34566777665321  233456789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      +||||||+++|+|.+++...   ..+++..+..++.|++.||+|||+++   ||||||||+|||++.++.+||+|||+++
T Consensus        83 ~~ivmEy~~gg~L~~~~~~~---~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~NIll~~~~~vkl~DFG~a~  156 (288)
T d1uu3a_          83 LYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAK  156 (288)
T ss_dssp             EEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEccCCCCHHHhhhcc---CCCCHHHHHHHHHHHHHHHHhhcccc---EEcCcCCccccccCCCceEEecccccce
Confidence            99999999999999988543   46999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCC----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          333 HIPET----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       333 ~~~~~----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      .+...    ......||+.|||||++.+..++.++|||||||++|||++|+.||.+.+.......+....          
T Consensus       157 ~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~----------  226 (288)
T d1uu3a_         157 VLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLE----------  226 (288)
T ss_dssp             ECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTC----------
T ss_pred             ecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCC----------
Confidence            76432    2234578999999999999999999999999999999999999998876554433222110          


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                              ..++..++.++.+||.+||+.||.+|||++|+++.
T Consensus       227 --------~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         227 --------YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             --------CCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             --------CCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCC
Confidence                    12344566889999999999999999999997543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-51  Score=399.12  Aligned_cols=266  Identities=21%  Similarity=0.322  Sum_probs=216.2

Q ss_pred             HHHHhcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeec
Q 011995          170 VAAACHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHAR  247 (473)
Q Consensus       170 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~  247 (473)
                      ++.-.++|+..+.||+|+||+||+|++.+  +......+|+|+..........++|.+|+++|++++||||++++++|..
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~   87 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV   87 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeecc
Confidence            33345789999999999999999999754  2344566666665544455556789999999999999999999999976


Q ss_pred             CCCCceEEEEEeccCCChhhhhhcCC---------------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCcee
Q 011995          248 DGSDQRMLIYERLFHGSLDRLIYGRS---------------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAM  306 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~gsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~iv  306 (473)
                      .  +..++||||+++|+|.+++....                     ....+++..++.|+.|++.||+|||+++   ||
T Consensus        88 ~--~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~---iv  162 (301)
T d1lufa_          88 G--KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FV  162 (301)
T ss_dssp             S--SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CC
T ss_pred             C--CceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC---eE
Confidence            5  78999999999999999996432                     1235899999999999999999999999   99


Q ss_pred             ecCCCCCceeeCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCC-CC
Q 011995          307 YNEFSTANIQIDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR-KN  381 (473)
Q Consensus       307 HrDlkp~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~-~p  381 (473)
                      ||||||+||||+.++.+||+|||+++......    .....+++.|+|||.+.+..++.++|||||||++|||++|. +|
T Consensus       163 HrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p  242 (301)
T d1lufa_         163 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP  242 (301)
T ss_dssp             CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             eeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCC
Confidence            99999999999999999999999997654332    23456788999999999999999999999999999999985 67


Q ss_pred             CCCCChHHHHhHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          382 LDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      |.+....+....+....                 ....+..++.++.+|+.+||+.||++||||.||++.|++|.+
T Consensus       243 ~~~~~~~e~~~~v~~~~-----------------~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         243 YYGMAHEEVIYYVRDGN-----------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             TTTSCHHHHHHHHHTTC-----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHcCC-----------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            87776655443332110                 011244556789999999999999999999999999998853

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-51  Score=399.66  Aligned_cols=265  Identities=19%  Similarity=0.294  Sum_probs=204.4

Q ss_pred             hcccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGS  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~  250 (473)
                      .++|+..+.||+|+||.||+|.+..  ...+++.+|+|+..........+.+.+|+.++.++ +|+|||.+++++...+ 
T Consensus        12 ~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~-   90 (299)
T d1ywna1          12 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG-   90 (299)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT-
T ss_pred             HHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCC-
Confidence            3689999999999999999998754  34456777777655444555567788898888887 7899999999886653 


Q ss_pred             CceEEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceee
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQI  317 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl  317 (473)
                      ..+++|||||++|+|.++|....             ....+++..++.++.||+.||+|||+++   ||||||||+||||
T Consensus        91 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---ivHrDlKp~NILl  167 (299)
T d1ywna1          91 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILL  167 (299)
T ss_dssp             SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEE
T ss_pred             CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC---CcCCcCCccceeE
Confidence            67899999999999999996532             1245899999999999999999999999   9999999999999


Q ss_pred             CCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcC-CCCCCCCChHHHHh
Q 011995          318 DKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTG-RKNLDSRHPKEERN  392 (473)
Q Consensus       318 ~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~~~~~  392 (473)
                      +.++.+||+|||+++......    .....||+.|||||++.++.++.++|||||||++|||+|| .+||.+........
T Consensus       168 ~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~  247 (299)
T d1ywna1         168 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC  247 (299)
T ss_dssp             CGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHH
T ss_pred             CCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence            999999999999998664332    2345789999999999999999999999999999999986 56787654333221


Q ss_pred             HhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          393 LVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                      ..      +..+          .....+..++.++.+|+.+||+.||.+|||+.||++.|+++.+.
T Consensus       248 ~~------~~~~----------~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         248 RR------LKEG----------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             HH------HHHT----------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HH------HhcC----------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            11      0000          11122445668899999999999999999999999999988643

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=5.8e-51  Score=403.89  Aligned_cols=253  Identities=19%  Similarity=0.258  Sum_probs=208.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||.||+|+...   ++..+++|+.... .....+.+.+|+.+|++++|||||++++++.++  +.+
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~---~g~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--~~~   98 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERA---TGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD--NEM   98 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT---TTEEEEEEEECCC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEET--TEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECC---CCCEEEEEEEccc-chhhHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--CEE
Confidence            4689999999999999999998654   3455666665433 334457789999999999999999999999876  889


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC--CCCcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID--KDFSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~--~~~~vkl~DFGla  331 (473)
                      |||||||++|+|.+++..  ....+++..+..|+.||+.||.|||+++   ||||||||+||||+  .++.+||+|||++
T Consensus        99 ~ivmE~~~gg~L~~~l~~--~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHrDiKp~NIll~~~~~~~vkL~DFG~a  173 (350)
T d1koaa2          99 VMIYEFMSGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLT  173 (350)
T ss_dssp             EEEECCCCSCBHHHHHTC--TTSCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTSCCEEECCCTTC
T ss_pred             EEEEEcCCCCCHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeeeeechhHeeeccCCCCeEEEeecchh
Confidence            999999999999999854  2346999999999999999999999999   99999999999996  4588999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      +.+.... .....+|+.|||||++.+..++.++|||||||++|||++|+.||.+.+..+....+.....           
T Consensus       174 ~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~-----------  242 (350)
T d1koaa2         174 AHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW-----------  242 (350)
T ss_dssp             EECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC-----------
T ss_pred             eecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC-----------
Confidence            8775443 3446889999999999999999999999999999999999999988766554433321110           


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                         .........++.++.+||.+||+.||++|||+.|+++.
T Consensus       243 ---~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         243 ---NMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             ---CSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             ---CCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence               01111123456889999999999999999999999874

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-51  Score=401.48  Aligned_cols=246  Identities=22%  Similarity=0.282  Sum_probs=202.4

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC--ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS--SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .|+..+.||+|+||+||+|+...+   ++.+|+|+......  ....+.+.+|+.+|++++|||||++++++.++  +..
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~---~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~--~~~   90 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRN---SEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE--HTA   90 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTT---TEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET--TEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCC---CcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEEC--CEE
Confidence            488889999999999999986543   45667776655432  33456799999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |||||||.+|+|..++..   ...+++..+..++.||+.||.|||+++   ||||||||+||||+.++.+||+|||++..
T Consensus        91 ~iv~E~~~~g~l~~~~~~---~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_          91 WLVMEYCLGSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASI  164 (309)
T ss_dssp             EEEEECCSEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred             EEEEEecCCCchHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEECCCCCEEEeecccccc
Confidence            999999999999876643   346999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCccCcccccccCChhhhhc---CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          334 IPETDISNSSVAAANLSVETLER---GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       334 ~~~~~~~~~~~t~~y~aPE~~~~---~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ...  .....||+.|||||++.+   +.|+.++|||||||++|||++|..||.+....+....+....            
T Consensus       165 ~~~--~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~------------  230 (309)
T d1u5ra_         165 MAP--ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE------------  230 (309)
T ss_dssp             SSS--BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC------------
T ss_pred             cCC--CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCC------------
Confidence            643  345679999999999864   458999999999999999999999998766554332221100            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       .+.+   .+..++.++.+||.+||+.||.+|||+.|+++
T Consensus       231 -~~~~---~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         231 -SPAL---QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             -CCCC---SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -CCCC---CCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence             0011   12345678999999999999999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-51  Score=393.62  Aligned_cols=255  Identities=21%  Similarity=0.361  Sum_probs=203.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|++.+.||+|+||.||+|++.++.    .+|+|  .+.......+.|.+|+.+|++++|||||+++|++.+   +..+
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~----~vAiK--~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~---~~~~   87 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTT----RVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE---EPIY   87 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTE----EEEEE--ECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS---SSCE
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCC----EEEEE--EECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEec---CCeE
Confidence            57999999999999999999976542    34444  444455556789999999999999999999999853   5679


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|..++... ....++|..++.++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+++..
T Consensus        88 lv~Ey~~~g~l~~~~~~~-~~~~l~~~~~~~i~~~i~~gl~~LH~~~---ivH~DlKp~NIll~~~~~~kl~DfGla~~~  163 (285)
T d1fmka3          88 IVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLI  163 (285)
T ss_dssp             EEECCCTTCBHHHHHSHH-HHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC--
T ss_pred             EEEEecCCCchhhhhhhc-ccccchHHHHHHHHHHHHHHHHHHhhhh---eecccccceEEEECCCCcEEEcccchhhhc
Confidence            999999999999988643 2346999999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCCc---cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCC-CCCCChHHHHhHhhhcccccccccccccc
Q 011995          335 PETDI---SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKN-LDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       335 ~~~~~---~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      .....   ....+|+.|+|||++.++.++.++|||||||++|||++|..| +......+....+.+.             
T Consensus       164 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~-------------  230 (285)
T d1fmka3         164 EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG-------------  230 (285)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-------------
T ss_pred             cCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhc-------------
Confidence            43322   334678999999999999999999999999999999996554 5554444333333211             


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhccc
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRK  459 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~  459 (473)
                          .+...+..++.++.+||.+||+.||++|||+.+|++.|+.+....
T Consensus       231 ----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         231 ----YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  275 (285)
T ss_dssp             ----CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             ----CCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCC
Confidence                111234456688999999999999999999999999999877544

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-51  Score=398.57  Aligned_cols=258  Identities=19%  Similarity=0.343  Sum_probs=207.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCe-eeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDAS-TSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .+|+..+.||+|+||+||+|.+..+.. ...++++|...........++|.+|+++|++++|||||+++|+|.+   +..
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~---~~~   85 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT---STV   85 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES---SSE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCe
Confidence            469999999999999999999764432 2334455544433445567889999999999999999999999975   467


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++++||+.+|+|.+++...  ...+++..++.++.||+.||+|||+++   ||||||||+||||+.++.+||+|||+++.
T Consensus        86 ~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~yLH~~~---iiHrDlKp~NIll~~~~~~kl~DFGla~~  160 (317)
T d1xkka_          86 QLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKL  160 (317)
T ss_dssp             EEEEECCTTCBHHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCCSHHHH
T ss_pred             eEEEEeccCCccccccccc--ccCCCHHHHHHHHHHHHHHHHHHHHcC---cccCcchhhcceeCCCCCeEeecccccee
Confidence            8999999999999988653  457999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccccc
Q 011995          334 IPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLS  408 (473)
Q Consensus       334 ~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (473)
                      ......    ....+|+.|||||++.++.++.++|||||||++|||+| |.+||.+....+....+...           
T Consensus       161 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~-----------  229 (317)
T d1xkka_         161 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG-----------  229 (317)
T ss_dssp             TTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHT-----------
T ss_pred             cccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC-----------
Confidence            654322    23357899999999999999999999999999999998 89999876654433333211           


Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          409 LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                            .+...+..++.++.+|+.+||+.||.+|||+.||++.|+++..
T Consensus       230 ------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         230 ------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             ------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ------CCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence                  1112245567889999999999999999999999999988753

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.1e-50  Score=402.14  Aligned_cols=253  Identities=20%  Similarity=0.235  Sum_probs=209.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||.||+|....   +++.+|+|+.... .......+.+|+.+|++++|||||++++++.++  +.+
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~---~~~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~--~~~  101 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKA---TGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK--YEM  101 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS--SEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECC---CCCEEEEEEECCc-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC--CEE
Confidence            4579999999999999999998543   3456677766543 223456788999999999999999999999876  889


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC--CCCcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID--KDFSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~--~~~~vkl~DFGla  331 (473)
                      |||||||++|+|.+++..  ....+++..+..|+.||+.||.|||+++   ||||||||+||||+  .++.+||+|||++
T Consensus       102 ~ivmE~~~gg~L~~~~~~--~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHRDiKp~NILl~~~~~~~vkL~DFGla  176 (352)
T d1koba_         102 VLILEFLSGGELFDRIAA--EDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLA  176 (352)
T ss_dssp             EEEEECCCCCBHHHHTTC--TTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTC
T ss_pred             EEEEEcCCCChHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccccccccccccCCCeEEEeecccc
Confidence            999999999999988743  3456999999999999999999999999   99999999999998  6789999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ..+.... .....+|+.|||||++.+..++.++|||||||++|||+||+.||.+.........+....            
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~------------  244 (352)
T d1koba_         177 TKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCD------------  244 (352)
T ss_dssp             EECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCC------------
T ss_pred             eecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC------------
Confidence            8876543 344578999999999999999999999999999999999999998876655443332111            


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ..........++.++.+||.+||+.||.+|||+.|+++.
T Consensus       245 --~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         245 --WEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             --CCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             --CCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              111112234567889999999999999999999999874

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-50  Score=392.58  Aligned_cols=252  Identities=17%  Similarity=0.228  Sum_probs=207.3

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-----CChhhHhHHHHHHHHHhCCCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-----SSQGVKEFINDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .+.|+..+.||+|+||+||+|....   +++.+|+|+.....     .....+.+.+|+.+|++++|||||++++++.++
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~---~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   85 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKS---TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK   85 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETT---TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECC---CCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            3679999999999999999999654   34556677654432     122357799999999999999999999999876


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC----cEE
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF----SAK  324 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~----~vk  324 (473)
                        +.+|||||||++|+|.+++...   ..+++..+..++.||+.||+|||+++   ||||||||+|||++.++    .+|
T Consensus        86 --~~~~iv~E~~~gg~L~~~i~~~---~~l~~~~~~~~~~qi~~al~yLH~~~---ivHrDiKp~Nill~~~~~~~~~vk  157 (293)
T d1jksa_          86 --TDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIK  157 (293)
T ss_dssp             --SEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSSSSCCEE
T ss_pred             --CEEEEEEEcCCCccccchhccc---cccchhHHHHHHHHHHHHHHhhhhcc---eeecccccceEEEecCCCcccceE
Confidence              8899999999999999999543   36999999999999999999999999   99999999999998776    499


Q ss_pred             EeccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc
Q 011995          325 LSGYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD  403 (473)
Q Consensus       325 l~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~  403 (473)
                      |+|||++...... ......+|+.|||||++.+..++.++|||||||++|||++|+.||.+....+....+.....    
T Consensus       158 l~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~----  233 (293)
T d1jksa_         158 IIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY----  233 (293)
T ss_dssp             ECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCC----
T ss_pred             ecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCC----
Confidence            9999999877544 34456789999999999999999999999999999999999999988766554333321110    


Q ss_pred             ccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          404 DCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                                ......+..++.++.+||.+||+.||.+|||++|+++
T Consensus       234 ----------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         234 ----------EFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             ----------CCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ----------CCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                      0000112245678999999999999999999999987

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-50  Score=398.37  Aligned_cols=248  Identities=17%  Similarity=0.239  Sum_probs=209.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|++.+.||+|+||.||+|+...   +++.+|+|+.....  .....+.+.+|+.+|+.++|||||++++++.++  +
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~---~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~--~   78 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKA---TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH--D   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS--S
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECC---CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccc--c
Confidence            4689999999999999999998543   45677777765321  233457789999999999999999999999876  8


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+|||||++|+|.+++..   ...+++..+..++.||+.||+|||+++   ||||||||+||||+.+|.+||+|||+|
T Consensus        79 ~~~iv~ey~~gg~L~~~~~~---~~~~~e~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NILl~~~g~vkl~DFG~a  152 (337)
T d1o6la_          79 RLCFVMEYANGGELFFHLSR---ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLC  152 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             ccccceeccCCCchhhhhhc---ccCCcHHHHHHHHHHHhhhhhhhhhcC---ccccccCHHHeEecCCCCEEEeecccc
Confidence            99999999999999999854   346899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +.....  .....+||+.|||||++.+..|+.++|||||||++|||++|++||.+.+.......+....           
T Consensus       153 ~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~-----------  221 (337)
T d1o6la_         153 KEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEE-----------  221 (337)
T ss_dssp             BCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-----------
T ss_pred             cccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCC-----------
Confidence            876432  3345689999999999999999999999999999999999999999877655433332111           


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~  450 (473)
                             ..+|..++.++.+||.+||++||.+|++     ++|+++
T Consensus       222 -------~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         222 -------IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             -------CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             -------CCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence                   1234556788999999999999999994     888886

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-50  Score=395.18  Aligned_cols=263  Identities=20%  Similarity=0.327  Sum_probs=208.7

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||.||+|++.++.. ...++++.+.........+.|.+|+++|.++ +|||||+++|+|.+.  +.+
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~--~~~   86 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGL-RMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR--GYL   86 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTE-EEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET--TEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCe-EEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecC--Cee
Confidence            678888999999999999999755432 1223334333333445567899999999999 799999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcC-------------CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          254 MLIYERLFHGSLDRLIYGR-------------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~-------------~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      ++||||+++|+|.++|+..             .....+++..+..++.||+.||.|||+++   ||||||||+|||++.+
T Consensus        87 ~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~---iiHrDlkp~NIL~~~~  163 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGEN  163 (309)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGG
T ss_pred             EEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC---ccccccccceEEEcCC
Confidence            9999999999999999653             23467999999999999999999999999   9999999999999999


Q ss_pred             CcEEEeccCCCcccCCCCc-cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCC-CCCCCCChHHHHhHhhhcc
Q 011995          321 FSAKLSGYGCAGHIPETDI-SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGR-KNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~-~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~-~p~~~~~~~~~~~~~~~~~  398 (473)
                      +.+||+|||+++....... ....+|..|+|||.+.++.++.++|||||||++|||++|. +||.+....+....+..  
T Consensus       164 ~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~--  241 (309)
T d1fvra_         164 YVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ--  241 (309)
T ss_dssp             GCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGG--
T ss_pred             CceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHh--
Confidence            9999999999976643332 2346789999999999999999999999999999999965 57876655443332210  


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                           +          .+...+..++.++.+||.+||+.||++||||.||++.|+++.+...
T Consensus       242 -----~----------~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~  288 (309)
T d1fvra_         242 -----G----------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  288 (309)
T ss_dssp             -----T----------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             -----c----------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCc
Confidence                 0          0112345567899999999999999999999999999999876554

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-51  Score=390.95  Aligned_cols=257  Identities=18%  Similarity=0.297  Sum_probs=201.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|+..+.||+|+||.||+|++.........+|+|+....  ......++|.+|+.+|++++|||||+++|++.+   ..
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~---~~   84 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---PP   84 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS---SS
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee---cc
Confidence            5789999999999999999987554433334444443322  234556789999999999999999999999964   46


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+++|+|.+++...  ...+++..++.++.||+.||.|||+++   |+||||||+||||+.++.+||+|||+++
T Consensus        85 ~~lv~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDikp~NIll~~~~~vkl~DfGl~~  159 (273)
T d1u46a_          85 MKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMR  159 (273)
T ss_dssp             CEEEEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             hheeeeeecCcchhhhhhcc--cCCCCHHHHHHHHHHHHHHHHHhhhCC---EeeeeecHHHhccccccceeeccchhhh
Confidence            78999999999999888543  346999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCc-----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhcccccccccc
Q 011995          333 HIPETDI-----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCR  406 (473)
Q Consensus       333 ~~~~~~~-----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  406 (473)
                      .......     ....++..|+|||.+.+..++.++|||||||++|||+| |..||.+....+....+...         
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~---------  230 (273)
T d1u46a_         160 ALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKE---------  230 (273)
T ss_dssp             ECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTS---------
T ss_pred             hcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhC---------
Confidence            7744322     23356789999999999999999999999999999998 89999887665543322111         


Q ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 011995          407 LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQ  455 (473)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l  455 (473)
                             ..+...+..++.++.+|+.+||+.||++|||+.+|++.|++.
T Consensus       231 -------~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         231 -------GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             -------CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -------CCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence                   111122445567899999999999999999999999999875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-50  Score=390.48  Aligned_cols=257  Identities=19%  Similarity=0.357  Sum_probs=202.0

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEEEEEe
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRMLIYER  259 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~lV~E~  259 (473)
                      .++||+|+||+||+|++.++......+++|...........++|.+|+++|++++|||||+++|++.... ...++||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~-~~~~lv~E~  110 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE-GSPLVVLPY  110 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETT-TEEEEEEEC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecC-CceEEEEEE
Confidence            4689999999999999876543333344444433345556688999999999999999999999987542 578999999


Q ss_pred             ccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccCCCCc
Q 011995          260 LFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIPETDI  339 (473)
Q Consensus       260 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~~~~~  339 (473)
                      |++|+|.+++..  ....+++..++.++.|++.||.|||+.+   |+||||||+||||++++.+||+|||+++.......
T Consensus       111 ~~~g~l~~~~~~--~~~~~~~~~~~~i~~qia~gL~~lH~~~---iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~  185 (311)
T d1r0pa_         111 MKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF  185 (311)
T ss_dssp             CTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTC
T ss_pred             eecCchhhhhcc--ccccchHHHHHHHHHHHHHhhhhhcccC---cccCCccHHhEeECCCCCEEEecccchhhcccccc
Confidence            999999999864  3456789999999999999999999999   99999999999999999999999999987643322


Q ss_pred             ------cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          340 ------SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       340 ------~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                            ....+|+.|+|||.+.++.++.++|||||||++|||+||..||........  ...+    +..+.        
T Consensus       186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~--~~~~----i~~g~--------  251 (311)
T d1r0pa_         186 DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVY----LLQGR--------  251 (311)
T ss_dssp             CCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC--------CHHH----HHTTC--------
T ss_pred             ccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHH--HHHH----HHcCC--------
Confidence                  234578999999999999999999999999999999998887765332211  1110    00110        


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                        +...+..++.++.+||.+||+.||++||++.||++.|+.+.+.
T Consensus       252 --~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         252 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             --CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             --CCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence              1112345567899999999999999999999999999998764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-50  Score=385.85  Aligned_cols=252  Identities=20%  Similarity=0.327  Sum_probs=199.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceE
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRM  254 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~  254 (473)
                      ++|+..+.||+|+||.||+|.+.+.     .+++|+.  . .....+.|.+|++++++++|||||+++|+|.++. +.++
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~-----~vAvK~i--~-~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~-~~~~   77 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYRGN-----KVAVKCI--K-NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-GGLY   77 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTE-----EEEEEEC--C-CCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC---CCE
T ss_pred             HHeEEeEEEecCCCeEEEEEEECCe-----EEEEEEE--C-cHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecC-CcEE
Confidence            5788889999999999999997542     3444443  3 2344578999999999999999999999986542 5689


Q ss_pred             EEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCccc
Q 011995          255 LIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHI  334 (473)
Q Consensus       255 lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~  334 (473)
                      +||||+++|+|.++|..+ ....++|..++.|+.||+.||.|||+.+   ||||||||+|||++.++.+||+|||+++..
T Consensus        78 lv~ey~~~g~L~~~l~~~-~~~~l~~~~~~~i~~~i~~al~ylH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~  153 (262)
T d1byga_          78 IVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEA  153 (262)
T ss_dssp             EEECCCTTEEHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC----
T ss_pred             EEEeccCCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHhhccccccCc---eeccccchHhheecCCCCEeecccccceec
Confidence            999999999999999653 2235899999999999999999999998   999999999999999999999999999876


Q ss_pred             CCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHHhHhhhccccccccccccccccc
Q 011995          335 PETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDP  413 (473)
Q Consensus       335 ~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (473)
                      ... .....++..|+|||++.++.++.++|||||||++|||+| |++||......+....+..                 
T Consensus       154 ~~~-~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~-----------------  215 (262)
T d1byga_         154 SST-QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-----------------  215 (262)
T ss_dssp             ---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT-----------------
T ss_pred             CCC-CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-----------------
Confidence            433 234567889999999999999999999999999999998 7888877654443322210                 


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          414 QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       414 ~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      ..+..++..++.++.+|+.+||+.||.+|||+.+|++.|+++..
T Consensus       216 ~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         216 GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            11223355566889999999999999999999999999999864

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-50  Score=393.19  Aligned_cols=248  Identities=18%  Similarity=0.255  Sum_probs=208.5

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC--CCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN--PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|++.+.||+|+||+||+|+...   +++.+|+|+....  ......+.+.+|+.+|+.++|||||++++++.++  +
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~---~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~--~   77 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRH---NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA--Q   77 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS--S
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECC---CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeC--C
Confidence            3689999999999999999999644   3456677766532  1233457789999999999999999999999876  8


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|+|||||.+|+|..++..   ...+++..+..++.||+.||+|||+++   ||||||||+||||+.+|.+||+|||++
T Consensus        78 ~~~ivmE~~~gg~l~~~~~~---~~~~~~~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NILl~~~g~vkL~DFG~a  151 (316)
T d1fota_          78 QIFMIMDYIEGGELFSLLRK---SQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFA  151 (316)
T ss_dssp             EEEEEECCCCSCBHHHHHHH---TSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             eeeeEeeecCCccccccccc---cccccccHHHHHHHHHHHhhhhhccCc---EEccccCchheeEcCCCCEEEecCccc
Confidence            99999999999999998854   346889999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccccc
Q 011995          332 GHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIM  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (473)
                      +..... ....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+....+....             
T Consensus       152 ~~~~~~-~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~-------------  217 (316)
T d1fota_         152 KYVPDV-TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAE-------------  217 (316)
T ss_dssp             EECSSC-BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCC-------------
T ss_pred             eEeccc-cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCC-------------
Confidence            876543 345689999999999999999999999999999999999999998876655443332111             


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 011995          412 DPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFEE  451 (473)
Q Consensus       412 ~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~~  451 (473)
                           ..++..++.++.+++.+||++||.+|+     |++++++.
T Consensus       218 -----~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         218 -----LRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             -----CCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             -----CCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence                 122445568899999999999999996     89999863

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.2e-50  Score=386.83  Aligned_cols=261  Identities=20%  Similarity=0.238  Sum_probs=206.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC-
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS-  250 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~-  250 (473)
                      .++|++.+.||+|+||+||+|....   +++.+++|+.....  .......|.+|+++|+.++|||||++++++...+. 
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~   82 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLR---LHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA   82 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETT---TTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSS
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECC---CCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCC
Confidence            4679999999999999999998543   45667777765443  33445679999999999999999999999876532 


Q ss_pred             -CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          251 -DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       251 -~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                       ...||||||+++|+|.+++...   ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++..+|+|||
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~~---~~l~~~~~~~i~~qi~~al~~lH~~~---iiHrDiKP~NIll~~~~~~~l~d~~  156 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFG  156 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTSCEEECCCT
T ss_pred             CceEEEEEECCCCCEehhhhccc---CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCccccCcccccCccccceeehhh
Confidence             3489999999999999988543   46999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCC-----CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          330 CAGHIPET-----DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       330 la~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      ++......     ......||+.|||||++.+..++.++|||||||++|||+||++||.+....+....+....+.    
T Consensus       157 ~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~----  232 (277)
T d1o6ya_         157 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPI----  232 (277)
T ss_dssp             TCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCC----
T ss_pred             hhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCC----
Confidence            98755322     234457899999999999999999999999999999999999999887655443222111110    


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHhhhc
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-TMRSIFEELDRQES  457 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-t~~eil~~L~~l~~  457 (473)
                                ........++.++.+||.+||++||.+|| |++++++.|.++.+
T Consensus       233 ----------~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         233 ----------PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             ----------CGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             ----------CCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence                      00111234568899999999999999999 89999999998764

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=387.01  Aligned_cols=261  Identities=21%  Similarity=0.352  Sum_probs=207.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCC----eeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDA----STSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDG  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~  249 (473)
                      ++|++.+.||+|+||.||+|+.....    .....+|+|+...........++.+|+..+.++ +|||||+++++|.++ 
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~-   91 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD-   91 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC-
Confidence            57888999999999999999864332    122344444443344445567899999999988 899999999999876 


Q ss_pred             CCceEEEEEeccCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRS-------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                       +..++||||+++|+|.++|..+.             ....+++..++.++.||+.||+|||+++   ||||||||+|||
T Consensus        92 -~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~---ivHrDiKp~NiL  167 (299)
T d1fgka_          92 -GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVL  167 (299)
T ss_dssp             -SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred             -CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC---EEeeeeccccee
Confidence             78999999999999999996543             1346899999999999999999999999   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ++.++.+||+|||+++......    .....+++.|+|||.+.++.|+.++|||||||++|||++ |.+||.+.......
T Consensus       168 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~  247 (299)
T d1fgka_         168 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF  247 (299)
T ss_dssp             ECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred             ecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHH
Confidence            9999999999999998764332    233567889999999999999999999999999999998 79999876655433


Q ss_pred             hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          392 NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                      ..+...                 ....++..++.++.+||.+||+.||.+|||+.||++.|+++..
T Consensus       248 ~~i~~~-----------------~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         248 KLLKEG-----------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             HHHHTT-----------------CCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHcC-----------------CCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence            322211                 1112244556789999999999999999999999999998854

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-50  Score=390.55  Aligned_cols=262  Identities=19%  Similarity=0.328  Sum_probs=214.3

Q ss_pred             cccccCcceeecCCceEEEEEECC--CCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGD--DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|+..+.||+|+||.||+|++..  +....+.+|+|+............|.+|+.++.++ +|||||+++|+|.+.  +
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~--~  100 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG--G  100 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--S
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC--C
Confidence            678888999999999999998743  33466777777766555555667899999999999 799999999999776  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCC---------------CCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCcee
Q 011995          252 QRMLIYERLFHGSLDRLIYGRS---------------DGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQ  316 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~---------------~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NIL  316 (473)
                      ..+||||||++|+|.++++...               ....+++..+..++.||+.||+|||+++   ||||||||+|||
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~---ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccccccccc
Confidence            8999999999999999996542               2336899999999999999999999999   999999999999


Q ss_pred             eCCCCcEEEeccCCCcccCCCCc----cCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHc-CCCCCCCCChHHHH
Q 011995          317 IDKDFSAKLSGYGCAGHIPETDI----SNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLT-GRKNLDSRHPKEER  391 (473)
Q Consensus       317 l~~~~~vkl~DFGla~~~~~~~~----~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~ellt-G~~p~~~~~~~~~~  391 (473)
                      ++.++.+||+|||+++.......    ....+|+.|+|||.+.++.++.++|||||||++|||+| |.+||.........
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~  257 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF  257 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH
T ss_pred             ccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            99999999999999987654321    33477899999999999999999999999999999998 66666665443322


Q ss_pred             -hHhhhcccccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcc
Q 011995          392 -NLVKWSRPFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESR  458 (473)
Q Consensus       392 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~  458 (473)
                       .++..                 ..+...+..++.++.+||.+||+.||.+|||+.+|++.|+++...
T Consensus       258 ~~~i~~-----------------~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         258 YKMIKE-----------------GFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             HHHHHH-----------------TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhc-----------------CCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence             12211                 111122445568899999999999999999999999999986554

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.8e-50  Score=398.03  Aligned_cols=251  Identities=17%  Similarity=0.194  Sum_probs=202.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhH---HHHHHHHHhCCCCCcccceeeeecC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEF---INDVNTLASLQHPNLCKLLGFHARD  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~Ei~~l~~l~HpnIv~l~g~~~~~  248 (473)
                      .++|++.+.||+|+||.||+|+...   +++.+|+|+.....  .......+   .+|+.+++.++|||||++++++.++
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~---t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~   79 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKAD---TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP   79 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECC---CCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEEC
Confidence            3689999999999999999999654   34566677654221  11112223   3457778888999999999999876


Q ss_pred             CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          249 GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       249 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                        +.+|||||||++|+|.++|..   ...+++..+..++.||+.||+|||+++   ||||||||+||||+.+|.+||+||
T Consensus        80 --~~~~ivmE~~~gg~L~~~l~~---~~~~~e~~~~~~~~qi~~aL~ylH~~~---iiHrDlKP~NILl~~~g~iKl~DF  151 (364)
T d1omwa3          80 --DKLSFILDLMNGGDLHYHLSQ---HGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDL  151 (364)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSSSCEEECCC
T ss_pred             --CEEEEEEEecCCCcHHHHHHh---cccccHHHHHHHHHHHHHHHHHHHHCC---ccceeeccceeEEcCCCcEEEeee
Confidence              789999999999999999954   346899999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccc
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRL  407 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (473)
                      |+++.+.........||+.|||||++.. ..|+.++|||||||++|||+||+.||..........+.....         
T Consensus       152 Gla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~---------  222 (364)
T d1omwa3         152 GLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL---------  222 (364)
T ss_dssp             TTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSS---------
T ss_pred             ceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcc---------
Confidence            9999887766677789999999999975 468999999999999999999999998755433222221110         


Q ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCC-----HHHHHH
Q 011995          408 SLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPT-----MRSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt-----~~eil~  450 (473)
                            .....++..++.++.+||.+||++||.+|||     ++|+++
T Consensus       223 ------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         223 ------TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             ------SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             ------cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence                  0011224456688999999999999999999     688875

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-49  Score=393.79  Aligned_cols=246  Identities=14%  Similarity=0.195  Sum_probs=207.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCc
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~  252 (473)
                      ++|++.+.||+|+||.||+|+...   +++.+|+|+.....  .....+.+.+|+.+|+.++|||||++++++.+.  ..
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~---~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--~~  115 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKE---SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN--SN  115 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS--SE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECC---CCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccc--cc
Confidence            689999999999999999999644   34566677654321  233456789999999999999999999999876  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||||+.+|+|.+++...   ..+++..+..++.||+.||.|||+++   ||||||||+||||+.++.+||+|||+++
T Consensus       116 ~~~v~e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHRDIKP~NILl~~~g~ikL~DFG~a~  189 (350)
T d1rdqe_         116 LYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAK  189 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cccccccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCC---EecCcCCHHHcccCCCCCEEeeeceeee
Confidence            99999999999999998543   36999999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccccc
Q 011995          333 HIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMD  412 (473)
Q Consensus       333 ~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (473)
                      .+... .....||+.|||||++.+..++.++|||||||++|||+||+.||.+.........+....+             
T Consensus       190 ~~~~~-~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~-------------  255 (350)
T d1rdqe_         190 RVKGR-TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKV-------------  255 (350)
T ss_dssp             ECSSC-BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC-------------
T ss_pred             ecccc-cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCC-------------
Confidence            77543 3456899999999999999999999999999999999999999988765554433321111             


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          413 PQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       413 ~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                           .++..++.++.+||.+||+.||.+|+     |+++|++
T Consensus       256 -----~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         256 -----RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             -----CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             -----CCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence                 12345668899999999999999994     8999986

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-49  Score=385.60  Aligned_cols=251  Identities=15%  Similarity=0.171  Sum_probs=205.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||+||+|....+   ++.+++|+....  ......+.+|+++|+.++|||||++++++.++  +.+
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~---~~~~AiK~i~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~--~~~   76 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSS---KKTYMAKFVKVK--GTDQVLVKKEISILNIARHRNILHLHESFESM--EEL   76 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTT---TEEEEEEEECCC--THHHHHHHHHHHHHHHSCCTTBCCEEEEEEET--TEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCC---CcEEEEEEEcCC--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC--CEE
Confidence            57899999999999999999996543   455666666543  34456688999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC--CcEEEeccCCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD--FSAKLSGYGCA  331 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~--~~vkl~DFGla  331 (473)
                      |||||||++|+|.+++..  .+..+++..+..++.||+.||+|||+++   |+||||||+|||++.+  +.+||+|||++
T Consensus        77 ~lvmE~~~gg~L~~~i~~--~~~~l~e~~~~~i~~qi~~al~yLH~~~---iiHrDlKp~NIll~~~~~~~ikl~DFG~~  151 (321)
T d1tkia_          77 VMIFEFISGLDIFERINT--SAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQA  151 (321)
T ss_dssp             EEEECCCCCCBHHHHHTS--SSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTC
T ss_pred             EEEEecCCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCcccccccceeecCCCceEEEEcccchh
Confidence            999999999999999954  2346999999999999999999999999   9999999999999854  58999999999


Q ss_pred             cccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          332 GHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       332 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....... .....+|+.|+|||.+.+..++.++|||||||++|||++|..||...........+.......         
T Consensus       152 ~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~---------  222 (321)
T d1tkia_         152 RQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTF---------  222 (321)
T ss_dssp             EECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCC---------
T ss_pred             hccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC---------
Confidence            8775443 344577899999999999999999999999999999999999998876655443332111000         


Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          411 MDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       411 ~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                           .......++.++.+||.+||+.||.+|||+.|+++
T Consensus       223 -----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         223 -----DEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             -----CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -----ChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                 00001134678999999999999999999999997

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=5.7e-49  Score=377.36  Aligned_cols=252  Identities=19%  Similarity=0.269  Sum_probs=206.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC--------hhhHhHHHHHHHHHhCC-CCCcccceeee
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS--------QGVKEFINDVNTLASLQ-HPNLCKLLGFH  245 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~  245 (473)
                      ++|+..+.||+|+||+||+|+...   .++.+|+|+.......        ...+.+.+|+.+|++++ |||||++++++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~---~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~   79 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKP---TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   79 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETT---TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             ccCEEceEEecCcCeEEEEEEECC---CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence            689999999999999999998544   3567778776654321        12346889999999997 99999999999


Q ss_pred             ecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEE
Q 011995          246 ARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKL  325 (473)
Q Consensus       246 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl  325 (473)
                      .++  +..|||||||++|+|.++|..   ...+++..++.++.||+.||+|||+++   ||||||||+|||++.++.+||
T Consensus        80 ~~~--~~~~ivmE~~~~g~L~~~l~~---~~~l~e~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~~kl  151 (277)
T d1phka_          80 ETN--TFFFLVFDLMKKGELFDYLTE---KVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKL  151 (277)
T ss_dssp             ECS--SEEEEEEECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEE
T ss_pred             ccC--cceEEEEEcCCCchHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHcC---CcccccccceEEEcCCCCeEE
Confidence            876  889999999999999999954   346999999999999999999999999   999999999999999999999


Q ss_pred             eccCCCcccCCC-CccCcccccccCChhhhhc------CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          326 SGYGCAGHIPET-DISNSSVAAANLSVETLER------GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       326 ~DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~------~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      +|||+++.+... ......+|..|+|||.+.+      ..++.++||||+||++|||++|+.||.+.........+....
T Consensus       152 ~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~  231 (277)
T d1phka_         152 TDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGN  231 (277)
T ss_dssp             CCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred             ccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCC
Confidence            999999877543 3345678999999999864      246889999999999999999999999876555433322111


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .              .........+++++.+|+.+||+.||.+|||+.||++.
T Consensus       232 ~--------------~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         232 Y--------------QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             C--------------CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             C--------------CCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            0              01111234567899999999999999999999999763

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-48  Score=380.48  Aligned_cols=262  Identities=19%  Similarity=0.316  Sum_probs=211.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCC--CeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCC
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDD--ASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~  251 (473)
                      .++|+..+.||+|+||+||+|.+...  ......+|+|+............|.+|++++++++|||||+++|+|..+  +
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~--~   96 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG--Q   96 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS--S
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecC--C
Confidence            36788889999999999999986432  2234455555554334445556789999999999999999999999765  7


Q ss_pred             ceEEEEEeccCCChhhhhhcC-------CCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEE
Q 011995          252 QRMLIYERLFHGSLDRLIYGR-------SDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAK  324 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~-------~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vk  324 (473)
                      ..++||||+++|+|.+++...       .....+++..+..++.|+++||.|||+++   |+||||||+||||+.++.+|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~---ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeeceEcCCceeecCCceEE
Confidence            899999999999999988542       12345799999999999999999999998   99999999999999999999


Q ss_pred             EeccCCCcccCCCC----ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcC-CCCCCCCChHHHHhHhhhccc
Q 011995          325 LSGYGCAGHIPETD----ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTG-RKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       325 l~DFGla~~~~~~~----~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG-~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |+|||+++......    .....+|+.|+|||.+.++.++.++|||||||++|||+|| ++||.+....+....+..   
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~---  250 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME---  250 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHT---
T ss_pred             EeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHh---
Confidence            99999998764332    2334678999999999999999999999999999999998 578877665554433321   


Q ss_pred             ccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhc
Q 011995          400 FLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQES  457 (473)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~  457 (473)
                          +.          ....+..++..+.++|.+||+.||.+|||+.+|++.|++..+
T Consensus       251 ----~~----------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         251 ----GG----------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             ----TC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             ----CC----------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence                00          011234556789999999999999999999999999987644

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-49  Score=388.55  Aligned_cols=247  Identities=21%  Similarity=0.335  Sum_probs=205.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC--CChhhHhHHHHHHHHH-hCCCCCcccceeeeecCCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP--SSQGVKEFINDVNTLA-SLQHPNLCKLLGFHARDGSD  251 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ei~~l~-~l~HpnIv~l~g~~~~~~~~  251 (473)
                      ++|++.+.||+|+||+||+|+...   +.+.+|+|+.....  .....+.+..|+.++. .++|||||++++++.++  +
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~---t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~--~   76 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKK---TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK--E   76 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETT---TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS--S
T ss_pred             CCeEEeeEEecCCCcEEEEEEECC---CCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccC--C
Confidence            689999999999999999999654   45667777765321  2334456777777765 68999999999999876  7


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      .+|||||||++|+|.+++..   ...+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus        77 ~~yivmEy~~~g~L~~~i~~---~~~~~e~~~~~~~~qi~~al~ylH~~~---iiHrDikp~NiL~~~~~~~kl~DFG~a  150 (320)
T d1xjda_          77 NLFFVMEYLNGGDLMYHIQS---CHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMC  150 (320)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             ceeEEEeecCCCcHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCcccceeecCCCceeccccchh
Confidence            89999999999999999954   346899999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC--CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccccccc
Q 011995          332 GHIPET--DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSL  409 (473)
Q Consensus       332 ~~~~~~--~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (473)
                      +.....  ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+....+          
T Consensus       151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~----------  220 (320)
T d1xjda_         151 KENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP----------  220 (320)
T ss_dssp             BCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC----------
T ss_pred             hhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC----------
Confidence            866432  33445789999999999999999999999999999999999999988776554443332211          


Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHH-HHHH
Q 011995          410 IMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMR-SIFE  450 (473)
Q Consensus       410 ~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~-eil~  450 (473)
                              .++..++.++.+||.+||++||.+|||+. ++++
T Consensus       221 --------~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         221 --------FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             --------CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             --------CCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence                    22445678899999999999999999995 6753

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-49  Score=387.42  Aligned_cols=253  Identities=16%  Similarity=0.218  Sum_probs=199.1

Q ss_pred             hcccccC-cceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhC-CCCCcccceeeeec--CC
Q 011995          174 CHNFFSD-RCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASL-QHPNLCKLLGFHAR--DG  249 (473)
Q Consensus       174 ~~~f~~~-~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l-~HpnIv~l~g~~~~--~~  249 (473)
                      .++|.+. +.||+|+||+||+|+...   +.+.+|+|+...      ...+.+|++++.++ +|||||++++++.+  ..
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~---~~~~vAiK~i~~------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~   80 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKR---TQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAG   80 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETT---TCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECC---CCCEEEEEEECC------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccC
Confidence            4688876 469999999999999544   345666776542      35678899987655 89999999998864  22


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC---CCcEEEe
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK---DFSAKLS  326 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~---~~~vkl~  326 (473)
                      ...+|||||||+||+|.++|..+ ....+++..+..|+.||+.||+|||+++   |+||||||+|||++.   ++.+||+
T Consensus        81 ~~~~~ivmEy~~gg~L~~~i~~~-~~~~l~e~~~~~i~~qi~~al~ylH~~~---iiHRDiKp~NIll~~~~~~~~~Kl~  156 (335)
T d2ozaa1          81 RKCLLIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLT  156 (335)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHSC-SCCCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSTTCCEEEC
T ss_pred             CCEEEEEEECCCCCcHHHHHHhc-CCCCcCHHHHHHHHHHHHHHHHHHHHcC---Ccccccccccccccccccccccccc
Confidence            36789999999999999999754 2456999999999999999999999999   999999999999985   5679999


Q ss_pred             ccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          327 GYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       327 DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      |||+++..... ......||+.|||||++.+..|+.++|||||||++|||+||+.||.+.........+.          
T Consensus       157 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~----------  226 (335)
T d2ozaa1         157 DFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK----------  226 (335)
T ss_dssp             CCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC-----------------
T ss_pred             ccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHH----------
Confidence            99999876543 3455689999999999999899999999999999999999999997654322211110          


Q ss_pred             cccccccc--ccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 RLSLIMDP--QLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~~~~~~~~--~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                        ..+...  .+.......++.++.+||.+||+.||++|||+.|+++.
T Consensus       227 --~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         227 --TRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             ---CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             --HHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence              000000  11111123567899999999999999999999999874

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-48  Score=380.28  Aligned_cols=260  Identities=17%  Similarity=0.185  Sum_probs=195.8

Q ss_pred             CcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC----ChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCceEE
Q 011995          180 DRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS----SQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRML  255 (473)
Q Consensus       180 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~~l  255 (473)
                      .++||+|+||+||+|..   ..+++.+|+|+......    ....+.+.+|+.+|++++|||||++++++..+  +..||
T Consensus         3 l~~lG~G~fg~Vy~~~~---~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~--~~~~i   77 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARD---KNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK--SNISL   77 (299)
T ss_dssp             EEEEEEETTEEEEEEEC---SSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT--TCCEE
T ss_pred             ceEeccCcCeEEEEEEE---CCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccC--Cceee
Confidence            47899999999999984   33456667776554321    12245689999999999999999999999876  78999


Q ss_pred             EEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcccC
Q 011995          256 IYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGHIP  335 (473)
Q Consensus       256 V~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~~~  335 (473)
                      ||||+.++++..++.   ....+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...
T Consensus        78 vmE~~~~~~~~~~~~---~~~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~  151 (299)
T d1ua2a_          78 VFDFMETDLEVIIKD---NSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFG  151 (299)
T ss_dssp             EEECCSEEHHHHHTT---CCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred             hhhhhcchHHhhhhh---cccCCCHHHHHHHHHHHHHHHHHhhccc---eecccCCcceEEecCCCccccccCccccccC
Confidence            999998887766652   3456899999999999999999999999   9999999999999999999999999998765


Q ss_pred             CCC--ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccc-----cccccc
Q 011995          336 ETD--ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFL-----ADDCRL  407 (473)
Q Consensus       336 ~~~--~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~  407 (473)
                      ...  .....+|+.|+|||++.+. .++.++|||||||++|||++|.+||.+....+....+.......     .+....
T Consensus       152 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~  231 (299)
T d1ua2a_         152 SPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSL  231 (299)
T ss_dssp             SCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             CCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhcc
Confidence            432  2345789999999998655 57999999999999999999999998877665443332110000     000000


Q ss_pred             ccccccccCCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          408 SLIMDPQLKGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       408 ~~~~~~~l~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      .....-......     ....+.++.+|+.+||+.||++|||++|+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         232 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             chhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence            000000000000     1235678999999999999999999999986

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-48  Score=375.22  Aligned_cols=271  Identities=18%  Similarity=0.240  Sum_probs=202.5

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||+||+|....   ++..+|+|+..... ......++.+|+++|++++|||||++++++.+.  +.+
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~---~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~--~~~   76 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKL---TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE--NKL   76 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETT---TCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET--TEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECC---CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccc--cce
Confidence            689999999999999999999643   33456677665433 233467899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      |+||||+.+ ++.+++... ....+++..+..++.||+.||+|||+++   ||||||||+|||++.++.+||+|||+++.
T Consensus        77 ~iv~e~~~~-~~~~~~~~~-~~~~l~e~~~~~~~~qil~~L~yLH~~~---IiHrDiKpeNIl~~~~~~~kl~DFG~a~~  151 (298)
T d1gz8a_          77 YLVFEFLHQ-DLKKFMDAS-ALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARA  151 (298)
T ss_dssp             EEEEECCSE-EHHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred             eEEEeecCC-chhhhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhcCC---EEccccCchheeecccCcceeccCCccee
Confidence            999999965 444444332 3456999999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCC--CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccccccccc
Q 011995          334 IPET--DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLI  410 (473)
Q Consensus       334 ~~~~--~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (473)
                      ....  ......+|+.|+|||.+.... ++.++|||||||++|||++|+.||.+.+..+....+................
T Consensus       152 ~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  231 (298)
T d1gz8a_         152 FGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVT  231 (298)
T ss_dssp             HCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGG
T ss_pred             ccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccc
Confidence            6543  234457899999999987665 5789999999999999999999998876554433221100000000000000


Q ss_pred             cccccC--------CC---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhh
Q 011995          411 MDPQLK--------GR---FPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQ  455 (473)
Q Consensus       411 ~~~~l~--------~~---~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l  455 (473)
                      ..+...        ..   .....+.++.+|+.+||+.||.+|||+.|+++.  |+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~  289 (298)
T d1gz8a_         232 SMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV  289 (298)
T ss_dssp             GSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             cccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccC
Confidence            000000        00   012456789999999999999999999999985  5443

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-48  Score=378.74  Aligned_cols=273  Identities=16%  Similarity=0.227  Sum_probs=196.0

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHH--HHHHHHhCCCCCcccceeeeecCCC--
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFIN--DVNTLASLQHPNLCKLLGFHARDGS--  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Ei~~l~~l~HpnIv~l~g~~~~~~~--  250 (473)
                      .+|...+.||+|+||.||+|++.+     ..+|+|+...  .  ....+.+  |+..+..++|||||+++|++.+++.  
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~g-----~~vAvK~~~~--~--~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~   73 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWRG-----EEVAVKIFSS--R--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW   73 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETT-----EEEEEEEECG--G--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSS
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECC-----EEEEEEEECc--c--chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcc
Confidence            457777899999999999999753     3445554432  2  2334444  5555567899999999999986532  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-----CCceeecCCCCCceeeCCCCcEEE
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG-----PFQAMYNEFSTANIQIDKDFSAKL  325 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~-----~~~ivHrDlkp~NILl~~~~~vkl  325 (473)
                      ..+|+|||||++|+|.++|.+.    .++|..+..++.|++.||+|||...     ..+||||||||+||||+.++.+||
T Consensus        74 ~~~~lv~Ey~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl  149 (303)
T d1vjya_          74 TQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  149 (303)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEE
T ss_pred             eEEEEEEecccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEE
Confidence            3689999999999999999653    5999999999999999999999741     123999999999999999999999


Q ss_pred             eccCCCcccCCCC------ccCcccccccCChhhhhcCC------CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhH
Q 011995          326 SGYGCAGHIPETD------ISNSSVAAANLSVETLERGL------LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNL  393 (473)
Q Consensus       326 ~DFGla~~~~~~~------~~~~~~t~~y~aPE~~~~~~------~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~  393 (473)
                      +|||++.......      .....+|+.|||||++.+..      ++.++|||||||++|||+||..||...........
T Consensus       150 ~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~  229 (303)
T d1vjya_         150 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY  229 (303)
T ss_dssp             CCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTT
T ss_pred             EecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchh
Confidence            9999998764322      23457899999999987643      56789999999999999999988754322111000


Q ss_pred             h-hhcccccccc--cccccccccccCCCC-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          394 V-KWSRPFLADD--CRLSLIMDPQLKGRF-PLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       394 ~-~~~~~~~~~~--~~~~~~~~~~l~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                      . ....+.....  .......++.+...+ .......+.+|+.+||+.||++|||+.||++.|+++..+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~~  300 (303)
T d1vjya_         230 DLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG  300 (303)
T ss_dssp             TTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             hcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHhcC
Confidence            0 0000000000  000011122221111 23566789999999999999999999999999999876543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-49  Score=376.75  Aligned_cols=242  Identities=17%  Similarity=0.231  Sum_probs=197.6

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCC-----ChhhHhHHHHHHHHHhCC--CCCcccceeeeec
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPS-----SQGVKEFINDVNTLASLQ--HPNLCKLLGFHAR  247 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Ei~~l~~l~--HpnIv~l~g~~~~  247 (473)
                      ++|++.+.||+|+||+||+|+...+   +..+++|+......     .....++.+|+.+|++++  |||||++++++.+
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~---~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~   80 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSD---NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER   80 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTT---CCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCC---CCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee
Confidence            5799999999999999999996543   45566776553211     112345789999999996  8999999999987


Q ss_pred             CCCCceEEEEEeccC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-CCcEEE
Q 011995          248 DGSDQRMLIYERLFH-GSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-DFSAKL  325 (473)
Q Consensus       248 ~~~~~~~lV~E~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-~~~vkl  325 (473)
                      .  +..++||||+.+ +++.+++..   ...+++..+..++.||+.||+|||+++   ||||||||+|||++. ++.+||
T Consensus        81 ~--~~~~lv~e~~~~~~~l~~~~~~---~~~l~e~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NIll~~~~~~vkl  152 (273)
T d1xwsa_          81 P--DSFVLILERPEPVQDLFDFITE---RGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKL  152 (273)
T ss_dssp             S--SEEEEEEECCSSEEEHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEE
T ss_pred             C--CeEEEEEEeccCcchHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---CccccCcccceEEecCCCeEEE
Confidence            6  789999999976 577777743   346999999999999999999999999   999999999999985 479999


Q ss_pred             eccCCCcccCCCCccCcccccccCChhhhhcCCC-CCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc
Q 011995          326 SGYGCAGHIPETDISNSSVAAANLSVETLERGLL-TPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD  404 (473)
Q Consensus       326 ~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~-s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
                      +|||+++...........||+.|||||++.+..+ +.++|||||||++|||++|+.||.....     ... ..      
T Consensus       153 ~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----i~~-~~------  220 (273)
T d1xwsa_         153 IDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-----IIR-GQ------  220 (273)
T ss_dssp             CCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----HHH-CC------
T ss_pred             CccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH-----Hhh-cc------
Confidence            9999998876666677789999999999988775 5779999999999999999999975311     111 00      


Q ss_pred             cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          405 CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                                  ..++..++.++.+||.+||+.||++|||++|+++.
T Consensus       221 ------------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         221 ------------VFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             ------------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ------------cCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence                        01233456789999999999999999999999873

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-47  Score=371.53  Aligned_cols=276  Identities=17%  Similarity=0.224  Sum_probs=206.8

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhC---CCCCcccceeeeecC-
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASL---QHPNLCKLLGFHARD-  248 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l---~HpnIv~l~g~~~~~-  248 (473)
                      -++|++.+.||+|+||+||+|......  .+.+|+|+.+... .......+.+|+.+|+.+   +|||||++++++... 
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~--~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~   83 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNG--GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   83 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTT--TEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCC--CEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence            468999999999999999999864321  2445666654432 223345677888877766   899999999988642 


Q ss_pred             --CCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          249 --GSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       249 --~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                        ....++++|||+.++++......  ....+++..+..++.|++.||+|||+++   ||||||||+|||++.++.+||+
T Consensus        84 ~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~yLH~~~---ivHrDiKp~NILi~~~~~~kl~  158 (305)
T d1blxa_          84 TDRETKLTLVFEHVDQDLTTYLDKV--PEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLA  158 (305)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHS--CTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEEC
T ss_pred             cccCceEEEEEEeccCCchhhhhhc--cCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecCCCccEEEEcCCCCeeec
Confidence              23578999999988777554432  3456899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCC-CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccc--
Q 011995          327 GYGCAGHIPET-DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLAD--  403 (473)
Q Consensus       327 DFGla~~~~~~-~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~--  403 (473)
                      |||++...... ......||+.|||||++.+..|+.++|||||||++|||++|++||.+....+....+.........  
T Consensus       159 dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  238 (305)
T d1blxa_         159 DFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEED  238 (305)
T ss_dssp             SCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred             chhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhc
Confidence            99999866443 335568899999999999999999999999999999999999999987766554433211100000  


Q ss_pred             ---ccccc----cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          404 ---DCRLS----LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       404 ---~~~~~----~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                         .....    ..........+....+..+.+|+.+||+.||++|||+.|+++.  |++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         239 WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLE  300 (305)
T ss_dssp             SCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             ccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCch
Confidence               00000    0000111112334567889999999999999999999999874  55543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=7.9e-47  Score=364.73  Aligned_cols=264  Identities=17%  Similarity=0.235  Sum_probs=201.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||+||+|+..++    +.+|+|+..... .....+.+.+|+.+|++++|||||++++++..+  +..
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~----~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~--~~~   75 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYG----ETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK--KRL   75 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTS----CEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS--SCE
T ss_pred             CCceeccEEecCCCcEEEEEEeCCC----CEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccC--Cce
Confidence            6899999999999999999987533    456777665543 233457899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      +++|||+.++.+..+..   ....+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||++..
T Consensus        76 ~i~~e~~~~~~~~~~~~---~~~~l~~~~~~~i~~qi~~~L~~LH~~~---IvHrDiKp~NIll~~~~~~kl~DfG~a~~  149 (286)
T d1ob3a_          76 VLVFEHLDQDLKKLLDV---CEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARA  149 (286)
T ss_dssp             EEEEECCSEEHHHHHHT---STTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             eEEEEeehhhhHHHHHh---hcCCcchhhhHHHHHHHHHHHHHhccCc---EEecCCCCceeeEcCCCCEEeccccccee
Confidence            99999998776666653   3457999999999999999999999999   99999999999999999999999999977


Q ss_pred             cCCCC--ccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccc-----ccc
Q 011995          334 IPETD--ISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLA-----DDC  405 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~-----~~~  405 (473)
                      .....  .....+++.|+|||.+.+. .++.++|||||||++|||++|+.||.+....+....+........     ...
T Consensus       150 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  229 (286)
T d1ob3a_         150 FGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVT  229 (286)
T ss_dssp             HCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGG
T ss_pred             cccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchh
Confidence            64432  2344678999999999765 468999999999999999999999988766554333221100000     000


Q ss_pred             ccc------cccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          406 RLS------LIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       406 ~~~------~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ...      ....+.....+....+.++.+|+.+||+.||++|||++|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         230 ELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             GSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000      000111111223456688999999999999999999999985

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-46  Score=372.40  Aligned_cols=270  Identities=16%  Similarity=0.156  Sum_probs=200.2

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecC----CCC
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARD----GSD  251 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~----~~~  251 (473)
                      +|...++||+|+||+||+|+...   +++.+|+|+.....     ..+.+|+++|++++|||||++++++...    +..
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~---~~~~vAiK~i~~~~-----~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~   92 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCD---SGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV   92 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETT---TCCEEEEEEEECCS-----SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECC---CCCEEEEEEECccc-----hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCce
Confidence            68888999999999999999654   34566677665332     2345799999999999999999998643    224


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGC  330 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGl  330 (473)
                      ++|||||||+++.+..+.........+++..+..++.||+.||+|||+++   ||||||||+||||+.++ .+||+|||+
T Consensus        93 ~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~---IiHrDiKp~NILl~~~~~~~kl~DFG~  169 (350)
T d1q5ka_          93 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGS  169 (350)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTTCCEEECCCTT
T ss_pred             EEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCcceEEEecCCCceeEecccc
Confidence            57999999977644444322234557999999999999999999999999   99999999999999775 899999999


Q ss_pred             CcccCCC-CccCcccccccCChhhhhc-CCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc--cc------
Q 011995          331 AGHIPET-DISNSSVAAANLSVETLER-GLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR--PF------  400 (473)
Q Consensus       331 a~~~~~~-~~~~~~~t~~y~aPE~~~~-~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~--~~------  400 (473)
                      +..+... ......+|..|+|||.+.+ ..++.++|||||||++|||++|++||......+....+....  +.      
T Consensus       170 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~  249 (350)
T d1q5ka_         170 AKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIRE  249 (350)
T ss_dssp             CEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             hhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhh
Confidence            9876544 3445688999999999865 468999999999999999999999998776555433322110  00      


Q ss_pred             -cc--cccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhhh
Q 011995          401 -LA--DDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQE  456 (473)
Q Consensus       401 -~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l~  456 (473)
                       ..  .....................+.++.+|+.+||+.||.+|||+.|+|+.  |+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         250 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             HCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence             00  0000000000011111223456789999999999999999999999963  55543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-45  Score=360.58  Aligned_cols=268  Identities=15%  Similarity=0.185  Sum_probs=199.4

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|++.+.||+|+||+||+|+...   .++.+|+|+..... .......+.+|+++|++++||||+++++++....   
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~---~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~   85 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRK---TGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPY   85 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETT---TCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECC---CCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccc
Confidence            3789999999999999999999643   34566677654432 3344577899999999999999999999875531   


Q ss_pred             ---CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEe
Q 011995          250 ---SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLS  326 (473)
Q Consensus       250 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~  326 (473)
                         .+..|+||||+.++.+..+.   .....+++..+..++.||+.||.|||+++   ||||||||+|||++.++.+||+
T Consensus        86 ~~~~~~~~iv~e~~~~~~~~~~~---~~~~~~~~~~~~~i~~qil~~l~~lH~~~---ivHrDlKp~NILl~~~~~~kl~  159 (318)
T d3blha1          86 NRCKGSIYLVFDFCEHDLAGLLS---NVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLA  159 (318)
T ss_dssp             -----CEEEEEECCCEEHHHHHT---CTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEEC
T ss_pred             cccCceEEEEEeccCCCccchhh---hcccccccHHHHHHHHHHHHHHHHhccCC---EEecCcCchheeecCCCcEEee
Confidence               25689999999877665544   23456899999999999999999999999   9999999999999999999999


Q ss_pred             ccCCCcccCCC------CccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc
Q 011995          327 GYGCAGHIPET------DISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP  399 (473)
Q Consensus       327 DFGla~~~~~~------~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~  399 (473)
                      |||++..+...      ......+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+.........+.....
T Consensus       160 dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~  239 (318)
T d3blha1         160 DFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCG  239 (318)
T ss_dssp             CCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             ecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcC
Confidence            99999765422      22345789999999999765 589999999999999999999999988776655444432211


Q ss_pred             ccccccccccc--------cc-ccc-CCCC-----CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 FLADDCRLSLI--------MD-PQL-KGRF-----PLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ~~~~~~~~~~~--------~~-~~l-~~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      ..... .....        .. ... ....     ....+.++.+|+.+||+.||++|||++|+++.
T Consensus       240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         240 SITPE-VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             CCCTT-TSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCChh-hccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            11000 00000        00 000 0000     01235677899999999999999999999864

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-45  Score=357.90  Aligned_cols=263  Identities=13%  Similarity=0.097  Sum_probs=199.9

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      .++|++.+.||+|+||+||+|+...+   ++.+|+|+.....   ...++.+|+++++.++|+|+|.+++.+...+ +..
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~---~~~vAvK~~~~~~---~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~-~~~   78 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAA---GEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEG-DYN   78 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTT---TEEEEEEEEESCT---TSCCHHHHHHHHHHSTTSTTCCCEEEEEEET-TEE
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCC---CCEEEEEEEchhc---cCHHHHHHHHHHHHccCCCcccEEEEEEecC-CEE
Confidence            35799999999999999999986543   3566777666542   3356889999999998888777766655443 788


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeC---CCCcEEEeccCC
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQID---KDFSAKLSGYGC  330 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~---~~~~vkl~DFGl  330 (473)
                      ++||||+ +++|.+.+..  ....+++..+..++.|++.||+|||+++   ||||||||+|||++   .+..+||+|||+
T Consensus        79 ~ivme~~-~~~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiHrDiKp~NIl~~~~~~~~~vkl~DFG~  152 (299)
T d1ckia_          79 VMVMELL-GPSLEDLFNF--CSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGL  152 (299)
T ss_dssp             EEEEECC-CCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCSS
T ss_pred             EEEEEEc-CCchhhhhhh--ccCCCcHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHhhccccccCCCceeeeeccCc
Confidence            9999999 5677666643  3456999999999999999999999999   99999999999986   456799999999


Q ss_pred             CcccCCCC---------ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhh-hcccc
Q 011995          331 AGHIPETD---------ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVK-WSRPF  400 (473)
Q Consensus       331 a~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~-~~~~~  400 (473)
                      ++.+....         .....||+.|||||.+.+..++.++|||||||++|||++|+.||...........+. +....
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~  232 (299)
T d1ckia_         153 AKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK  232 (299)
T ss_dssp             CEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHH
T ss_pred             ceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhccc
Confidence            98764322         234578999999999999999999999999999999999999998755433222111 10000


Q ss_pred             cccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccC
Q 011995          401 LADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKS  460 (473)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~  460 (473)
                      ...       ..+.    ....++.++.+|+..||+.||++||++.+|.+.|+.+..+..
T Consensus       233 ~~~-------~~~~----~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~~  281 (299)
T d1ckia_         233 MST-------PIEV----LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  281 (299)
T ss_dssp             HHS-------CHHH----HTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCC-------ChhH----hccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHcC
Confidence            000       0000    122455789999999999999999999999999998765443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-46  Score=366.56  Aligned_cols=268  Identities=13%  Similarity=0.163  Sum_probs=198.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCcccceeeeecCCC--C
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGS--D  251 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~--~  251 (473)
                      +.+|+..+.||+|+||+||+|....   +++.+|+|++.........+.+.+|+++|+.++|||||++++++..+..  .
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~---~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~   83 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNV---NKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM   83 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETT---TCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTC
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECC---CCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeecccccc
Confidence            4579999999999999999998543   3456677776544445556789999999999999999999999865421  2


Q ss_pred             ceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCC
Q 011995          252 QRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCA  331 (473)
Q Consensus       252 ~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla  331 (473)
                      ..+++++|+.+|+|.+++...    .+++..+..++.||+.||+|||+++   ||||||||+||||+.++.+||+|||++
T Consensus        84 ~~~~l~~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~~~---iiHRDIKp~NILl~~~~~~kl~DfG~a  156 (345)
T d1pmea_          84 KDVYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLA  156 (345)
T ss_dssp             CCEEEEEECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCcceEEECCCCCEEEcccCce
Confidence            334555667799999999542    5999999999999999999999999   999999999999999999999999999


Q ss_pred             cccCCC-----CccCcccccccCChhhhh-cCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          332 GHIPET-----DISNSSVAAANLSVETLE-RGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       332 ~~~~~~-----~~~~~~~t~~y~aPE~~~-~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ......     ......+|+.|+|||++. +..++.++||||+||++|||++|+.||.......................
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  236 (345)
T d1pmea_         157 RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQED  236 (345)
T ss_dssp             EECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHH
T ss_pred             eeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhh
Confidence            765332     224456889999999984 45578999999999999999999999988765443332211100000000


Q ss_pred             c---------cccccccccCC----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          406 R---------LSLIMDPQLKG----RFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       406 ~---------~~~~~~~~l~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .         ......+....    ......+.++.+|+.+||+.||.+|||+.|+|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         237 LNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0         00000000000    0112345688999999999999999999999975

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-45  Score=364.97  Aligned_cols=269  Identities=14%  Similarity=0.193  Sum_probs=200.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|+..+.||+|+||+||+|....   +++.+|+|+..... .....+.+.+|+++|+.++|||||+++++|...+   
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~   93 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGR---TGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD   93 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETT---TCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECC---CCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccc
Confidence            4689999999999999999998543   34566677665432 3344567899999999999999999999987642   


Q ss_pred             -CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEecc
Q 011995          250 -SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGY  328 (473)
Q Consensus       250 -~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DF  328 (473)
                       ...+|+||||+ +.+|..++..    ..+++..+..++.||+.||.|||+++   ||||||||+|||++.++.+||+||
T Consensus        94 ~~~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~~~~qi~~aL~~LH~~~---IiHrDiKp~NIL~~~~~~~kl~Df  165 (346)
T d1cm8a_          94 DFTDFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDF  165 (346)
T ss_dssp             TCCCCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCC
T ss_pred             ccceEEEEEecc-cccHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCcchhhcccccccccccc
Confidence             23679999999 5678777743    35999999999999999999999999   999999999999999999999999


Q ss_pred             CCCcccCCCCccCcccccccCChhhhhcC-CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcccccccc---
Q 011995          329 GCAGHIPETDISNSSVAAANLSVETLERG-LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADD---  404 (473)
Q Consensus       329 Gla~~~~~~~~~~~~~t~~y~aPE~~~~~-~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~---  404 (473)
                      |++..... ......+|+.|+|||++.+. .++.++|||||||++|||++|++||.+....................   
T Consensus       166 g~a~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d1cm8a_         166 GLARQADS-EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ  244 (346)
T ss_dssp             TTCEECCS-SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred             cceeccCC-ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHh
Confidence            99987644 34566889999999998764 47899999999999999999999998876554433221110000000   


Q ss_pred             -----------cccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhh
Q 011995          405 -----------CRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQ  455 (473)
Q Consensus       405 -----------~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l  455 (473)
                                 ..+.......+ .......+.++.+||.+||+.||.+|||+.|+|+.  |+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~  307 (346)
T d1cm8a_         245 RLQSDEAKNYMKGLPELEKKDF-ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL  307 (346)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCG-GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred             hhcchhhhhhhccCCcccccch-HHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcC
Confidence                       00000000000 11223456788999999999999999999999985  5544

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.4e-44  Score=355.81  Aligned_cols=260  Identities=16%  Similarity=0.190  Sum_probs=199.4

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|++.+.||+|+||+||+|+...   +++.+|+|+...    ...+++.+|+++|..++ ||||+++++++.......+
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~---~~~~vAiK~i~~----~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~  107 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINIT---NNEKVVVKILKP----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETT---TTEEEEEEEECS----SCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECC---CCCEEEEEEECH----HHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence            689999999999999999998543   445666766542    23567899999999995 9999999999886655789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCC-cEEEeccCCCc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDF-SAKLSGYGCAG  332 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~-~vkl~DFGla~  332 (473)
                      ++||||+.+++|..+.      ..+++..+..++.||+.||+|||+++   ||||||||+||||+.++ .+||+|||++.
T Consensus       108 ~~v~e~~~~~~L~~~~------~~l~e~~i~~i~~qil~aL~~LH~~g---IvHrDiKp~NILi~~~~~~vkl~DFG~a~  178 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY------QTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAE  178 (328)
T ss_dssp             EEEEECCCSCBGGGTT------TSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCGGGCE
T ss_pred             eEEEeecCCCcHHHHh------cCCCHHHHHHHHHHHHHHHHHHhhcc---cccccccccceEEcCCCCeeeecccccce
Confidence            9999999999997764      24899999999999999999999999   99999999999998654 69999999998


Q ss_pred             ccCCC-CccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHH-hHhh----------hccc
Q 011995          333 HIPET-DISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEER-NLVK----------WSRP  399 (473)
Q Consensus       333 ~~~~~-~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~-~~~~----------~~~~  399 (473)
                      ..... ......+|+.|+|||.+.+.. ++.++|||||||++|||++|..||......... ..+.          |...
T Consensus       179 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~  258 (328)
T d3bqca1         179 FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDK  258 (328)
T ss_dssp             ECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             eccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhh
Confidence            77543 345567899999999987654 799999999999999999999999765432211 1110          0000


Q ss_pred             -cccccccccccc--------ccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          400 -FLADDCRLSLIM--------DPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       400 -~~~~~~~~~~~~--------~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                       ............        ...........++.++.+||.+||+.||.+|||++|+|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         259 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             TTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             000000000000        001111123446788999999999999999999999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=3.9e-45  Score=353.88  Aligned_cols=264  Identities=13%  Similarity=0.105  Sum_probs=206.2

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCC-CCcccceeeeecCCCCc
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQH-PNLCKLLGFHARDGSDQ  252 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-pnIv~l~g~~~~~~~~~  252 (473)
                      .++|++.+.||+|+||+||+|+...   +++.+|+|+....   .....+.+|++++..+.| +|++.+++++...  ..
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~---~~~~vAvK~~~~~---~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~--~~   75 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLL---NNQQVAIKFEPRR---SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEG--LH   75 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETT---TTEEEEEEEEECC---TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEET--TE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECC---CCCEEEEEEEccc---cCcHHHHHHHHHHHHhcCCCCCCEEEEEeecC--Cc
Confidence            3689999999999999999999654   3456677765543   233567889999999965 8999999988766  78


Q ss_pred             eEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCC-----CCcEEEec
Q 011995          253 RMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDK-----DFSAKLSG  327 (473)
Q Consensus       253 ~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~-----~~~vkl~D  327 (473)
                      .++||||+ +++|.+++...  +..+++.++..++.|++.||+|||+++   ||||||||+|||++.     ++.+||+|
T Consensus        76 ~~~vme~~-~~~l~~~~~~~--~~~~~~~~~~~i~~q~~~~l~~lH~~g---iiHrDiKp~Nili~~~~~~~~~~vkl~D  149 (293)
T d1csna_          76 NVLVIDLL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVD  149 (293)
T ss_dssp             EEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECC
T ss_pred             cEEEEEec-CCCHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHHHHCC---ceeccCCccceeecCcccccCCceEEcc
Confidence            89999998 78999988543  446999999999999999999999999   999999999999974     57899999


Q ss_pred             cCCCcccCCC---------CccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhcc
Q 011995          328 YGCAGHIPET---------DISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSR  398 (473)
Q Consensus       328 FGla~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~  398 (473)
                      ||+++.....         ......||+.|||||.+.+..++.++|||||||++|||+||..||.+..............
T Consensus       150 FG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~  229 (293)
T d1csna_         150 FGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG  229 (293)
T ss_dssp             CTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHH
T ss_pred             cceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHH
Confidence            9999875322         1234578999999999999999999999999999999999999998654432222111100


Q ss_pred             cccccccccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhcccCC
Q 011995          399 PFLADDCRLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFEELDRQESRKSS  461 (473)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~~l~~~~~~  461 (473)
                      ..     .. ....+.+    ...++.++.+++..|+..+|++||+++.+.+.|+++..+...
T Consensus       230 ~~-----~~-~~~~~~l----~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~~~  282 (293)
T d1csna_         230 EK-----KQ-STPLREL----CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT  282 (293)
T ss_dssp             HH-----HH-HSCHHHH----TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             hc-----cC-CCChHHh----cCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHcCC
Confidence            00     00 0000011    123457899999999999999999999999999988766544

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=349.81  Aligned_cols=265  Identities=15%  Similarity=0.167  Sum_probs=204.1

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCCCCce
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQR  253 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~~~~~  253 (473)
                      ++|+..+.||+|+||+||+|+...   +.+.+|+|+.+... ......++.+|+.+|+.++|||||++++++.+.  +..
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~---~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~--~~~   76 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRE---THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--KKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETT---TCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECS--SEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECC---CCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccc--cce
Confidence            579999999999999999999544   34567777776554 334567899999999999999999999999876  789


Q ss_pred             EEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          254 MLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       254 ~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      ++|+|++.+++|..++..   ...+++..+..++.|++.||+|||+++   ||||||||+|||++.++.+||+|||.++.
T Consensus        77 ~iv~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~q~~~aL~~lH~~~---IvHrDiKP~NIli~~~~~~kl~DFG~a~~  150 (292)
T d1unla_          77 TLVFEFCDQDLKKYFDSC---NGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             EEEEECCSEEHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEeeecccccccccccc---ccccchhHHHHHHHHHHHHHHHhhcCC---EeeecccCcccccccCCceeeeecchhhc
Confidence            999999999998887743   456899999999999999999999999   99999999999999999999999999987


Q ss_pred             cCCCC--ccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCC-hHHHHhHhhhccccccc-c----
Q 011995          334 IPETD--ISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRH-PKEERNLVKWSRPFLAD-D----  404 (473)
Q Consensus       334 ~~~~~--~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~-~~~~~~~~~~~~~~~~~-~----  404 (473)
                      .....  .....++..|+|||.+.+.. ++.++|||||||++|||++|+.||.... ..+....+......... .    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (292)
T d1unla_         151 FGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSM  230 (292)
T ss_dssp             CCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTG
T ss_pred             ccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhh
Confidence            75432  23345678899999987665 6899999999999999999999865443 33322222111000000 0    


Q ss_pred             cc------cccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 011995          405 CR------LSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERPTMRSIFE  450 (473)
Q Consensus       405 ~~------~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~  450 (473)
                      ..      .................+..+.+|+.+||+.||.+|||++|+|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         231 TKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             GGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            00      00000001111223456788999999999999999999999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-45  Score=359.28  Aligned_cols=254  Identities=17%  Similarity=0.235  Sum_probs=202.3

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecC---CCChhhHhHHHHHHHHHhCCC-CCcccceeeeecCCC
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLN---PSSQGVKEFINDVNTLASLQH-PNLCKLLGFHARDGS  250 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Ei~~l~~l~H-pnIv~l~g~~~~~~~  250 (473)
                      ++|++.+.||+|+||+||+|....+..++..+|+|+....   ......+.+.+|+++|++++| |||+++++++.+.  
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~--  101 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE--  101 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET--
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC--
Confidence            6799999999999999999987555555666777765432   123345678899999999966 8999999998876  


Q ss_pred             CceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccCC
Q 011995          251 DQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGC  330 (473)
Q Consensus       251 ~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGl  330 (473)
                      ...++||||+.+|+|.+++...   ..+....+..++.||+.||+|||+.+   ||||||||+||||+.++.+||+|||+
T Consensus       102 ~~~~~v~e~~~~~~L~~~i~~~---~~~~e~~~~~~~~Qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~vkL~DFG~  175 (322)
T d1vzoa_         102 TKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGL  175 (322)
T ss_dssp             TEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             CceeeeeecccccHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHhhcCC---EEeccCCccceeecCCCCEEEeeccc
Confidence            7899999999999999998543   35788999999999999999999999   99999999999999999999999999


Q ss_pred             CcccCCCC---ccCcccccccCChhhhhcC--CCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc
Q 011995          331 AGHIPETD---ISNSSVAAANLSVETLERG--LLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC  405 (473)
Q Consensus       331 a~~~~~~~---~~~~~~t~~y~aPE~~~~~--~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (473)
                      ++.+....   .....+++.|++||.+.+.  .++.++|||||||+||||++|..||...........+....       
T Consensus       176 a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~-------  248 (322)
T d1vzoa_         176 SKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRI-------  248 (322)
T ss_dssp             EEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHH-------
T ss_pred             hhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhc-------
Confidence            97664322   2345788999999999765  36889999999999999999999997765433222211000       


Q ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhcccCCCCCC-----CHHHHHH
Q 011995          406 RLSLIMDPQLKGRFPLKAARTVADIALRCLQKEPSERP-----TMRSIFE  450 (473)
Q Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~eil~  450 (473)
                           .  .....++...+.++.+|+.+||++||.+||     |++|+++
T Consensus       249 -----~--~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         249 -----L--KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             -----H--HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             -----c--cCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence                 0  001123446678999999999999999999     5888886

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-44  Score=355.03  Aligned_cols=265  Identities=14%  Similarity=0.180  Sum_probs=193.2

Q ss_pred             cccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC----
Q 011995          175 HNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG----  249 (473)
Q Consensus       175 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~----  249 (473)
                      ++|++.+.||+|+||+||+|....   ++..+|+|+..... .......+.+|+.+|++++|||||++++++...+    
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~---t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~   93 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAV---LDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE   93 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETT---TTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred             CCeEEEEEeecCcCeEEEEEEECC---CCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEeccccccc
Confidence            679999999999999999998543   45667777776543 3344567899999999999999999999986542    


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ...+|+||||+.++ +.+.+.     ..+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+|++|||
T Consensus        94 ~~~~~iv~Ey~~~~-l~~~~~-----~~~~~~~i~~~~~qil~gl~~LH~~g---iiHrDlKP~Nil~~~~~~~kl~df~  164 (355)
T d2b1pa1          94 FQDVYLVMELMDAN-LCQVIQ-----MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_dssp             CCEEEEEEECCSEE-HHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCC
T ss_pred             CceeEEEEeccchH-HHHhhh-----cCCCHHHHHHHHHHHHHHHHHhhhcc---cccccCCccccccccccceeeechh
Confidence            36889999999665 444442     24899999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCC-ccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccc---------
Q 011995          330 CAGHIPETD-ISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRP---------  399 (473)
Q Consensus       330 la~~~~~~~-~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~---------  399 (473)
                      +++...... .....+|+.|+|||++.+..++.++||||+||++|||++|+.||.+.+.......+.....         
T Consensus       165 ~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~  244 (355)
T d2b1pa1         165 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKK  244 (355)
T ss_dssp             C---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTT
T ss_pred             hhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHH
Confidence            987765443 3445789999999999999999999999999999999999999987765443332210000         


Q ss_pred             c-------cccc-----cccccccccccC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 011995          400 F-------LADD-----CRLSLIMDPQLK---GRFPLKAARTVADIALRCLQKEPSERPTMRSIFEE  451 (473)
Q Consensus       400 ~-------~~~~-----~~~~~~~~~~l~---~~~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  451 (473)
                      .       ....     ............   .......+.++.+|+.+||+.||++|||++|||+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         245 LQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             SCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0       0000     000000000000   01123567889999999999999999999999864

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-44  Score=354.80  Aligned_cols=271  Identities=14%  Similarity=0.188  Sum_probs=200.7

Q ss_pred             hcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCC-CChhhHhHHHHHHHHHhCCCCCcccceeeeecCC---
Q 011995          174 CHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNP-SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDG---  249 (473)
Q Consensus       174 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ei~~l~~l~HpnIv~l~g~~~~~~---  249 (473)
                      .++|+..+.||+|+||+||+|+...   +++.+|+|+..... .....+.+.+|+++|+.++|||||++++++....   
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~   93 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTK---TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE   93 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETT---TTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTT
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECC---CCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccc
Confidence            5679999999999999999998543   44566677655432 2334567899999999999999999999886431   


Q ss_pred             CCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCCCcEEEeccC
Q 011995          250 SDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYG  329 (473)
Q Consensus       250 ~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~~~vkl~DFG  329 (473)
                      ....++|++|+.+|+|.+++..    ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+|++|||
T Consensus        94 ~~~~~~i~~~~~gg~L~~~~~~----~~l~e~~~~~i~~qil~aL~~LH~~g---iiHrDiKp~NILi~~~~~~kl~dfg  166 (348)
T d2gfsa1          94 EFNDVYLVTHLMGADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFG  166 (348)
T ss_dssp             TCCCCEEEEECCSEEHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCC-
T ss_pred             cCceEEEEEeecCCchhhhccc----ccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCCccccccccccccccccc
Confidence            1345667778889999999943    35999999999999999999999999   9999999999999999999999999


Q ss_pred             CCcccCCCCccCcccccccCChhhhhcCC-CCCcCCchHHHHHHHHHHcCCCCCCCCChHHHHhHhhhccccccccc---
Q 011995          330 CAGHIPETDISNSSVAAANLSVETLERGL-LTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDC---  405 (473)
Q Consensus       330 la~~~~~~~~~~~~~t~~y~aPE~~~~~~-~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~---  405 (473)
                      ++..... ......+++.|+|||.+.+.. ++.++|||||||++|+|++|++||.+.+.......+...........   
T Consensus       167 ~a~~~~~-~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~  245 (348)
T d2gfsa1         167 LARHTDD-EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKK  245 (348)
T ss_dssp             ---CCTG-GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTT
T ss_pred             hhcccCc-ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhh
Confidence            9876533 335567889999999877654 68999999999999999999999988776554443321110000000   


Q ss_pred             ----ccccccc--cccC-CC---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--HHhh
Q 011995          406 ----RLSLIMD--PQLK-GR---FPLKAARTVADIALRCLQKEPSERPTMRSIFEE--LDRQ  455 (473)
Q Consensus       406 ----~~~~~~~--~~l~-~~---~~~~~~~~l~~li~~cl~~dP~~RPt~~eil~~--L~~l  455 (473)
                          .......  .... ..   .....+.++.+||.+||+.||.+|||+.|+|+.  |+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~  307 (348)
T d2gfsa1         246 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQY  307 (348)
T ss_dssp             CCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTT
T ss_pred             ccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCC
Confidence                0000000  0000 00   012356788999999999999999999999973  4443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-39  Score=322.32  Aligned_cols=267  Identities=17%  Similarity=0.177  Sum_probs=193.1

Q ss_pred             ccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-----------CCCcccceee
Q 011995          176 NFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-----------HPNLCKLLGF  244 (473)
Q Consensus       176 ~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----------HpnIv~l~g~  244 (473)
                      +|++.+.||+|+||+||+|+...   ++..+|+|+.+  ......+.+.+|+.+++.++           |+|||+++++
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~---~g~~vAvKvi~--~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMV---NNTHVAMKIVR--GDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETT---TTEEEEEEEEC--SCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECC---CCCEEEEEEEe--ccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            49999999999999999999543   33455666554  33344567788999998875           5789999999


Q ss_pred             eecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhh-cCCCceeecCCCCCceeeCCCC--
Q 011995          245 HARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE-EGPFQAMYNEFSTANIQIDKDF--  321 (473)
Q Consensus       245 ~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~-~~~~~ivHrDlkp~NILl~~~~--  321 (473)
                      +...+....+++|+++..+..............+++..+..++.||+.||+|||+ .+   |+||||||+||||+.++  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~---IvHrDlKp~NIll~~~~~~  165 (362)
T d1q8ya_          89 FNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSP  165 (362)
T ss_dssp             EEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETT
T ss_pred             eeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcC---cccccCChhHeeeeccCcc
Confidence            8766556778888887666544333333455678999999999999999999998 77   99999999999998654  


Q ss_pred             ----cEEEeccCCCcccCCCCccCcccccccCChhhhhcCCCCCcCCchHHHHHHHHHHcCCCCCCCCChHHH------H
Q 011995          322 ----SAKLSGYGCAGHIPETDISNSSVAAANLSVETLERGLLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEE------R  391 (473)
Q Consensus       322 ----~vkl~DFGla~~~~~~~~~~~~~t~~y~aPE~~~~~~~s~~sDvwSlGvvl~elltG~~p~~~~~~~~~------~  391 (473)
                          .++++|||.+..... ......+|+.|+|||++.+..++.++||||+||+++||++|+.||........      .
T Consensus       166 ~~~~~~kl~dfg~s~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~  244 (362)
T d1q8ya_         166 ENLIQIKIADLGNACWYDE-HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHI  244 (362)
T ss_dssp             TTEEEEEECCCTTCEETTB-CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHH
T ss_pred             cccceeeEeeccccccccc-ccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHH
Confidence                399999999876543 33556789999999999999999999999999999999999999975432110      0


Q ss_pred             hHhhhc---------------ccccccccccccccc---------cccCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 011995          392 NLVKWS---------------RPFLADDCRLSLIMD---------PQLKGRFPLKAARTVADIALRCLQKEPSERPTMRS  447 (473)
Q Consensus       392 ~~~~~~---------------~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~e  447 (473)
                      ....+.               ..+.........+..         ......+....+.++.+|+.+||..||.+|||++|
T Consensus       245 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e  324 (362)
T d1q8ya_         245 AQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGG  324 (362)
T ss_dssp             HHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHH
T ss_pred             HHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHH
Confidence            000000               000000000000000         00122345678899999999999999999999999


Q ss_pred             HHHH
Q 011995          448 IFEE  451 (473)
Q Consensus       448 il~~  451 (473)
                      +|+.
T Consensus       325 ~L~H  328 (362)
T d1q8ya_         325 LVNH  328 (362)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9874

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=3e-23  Score=186.46  Aligned_cols=165  Identities=12%  Similarity=0.115  Sum_probs=116.6

Q ss_pred             ccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCC-----------------hhhHhHHHHHHHHHhCCCCCccc
Q 011995          178 FSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSS-----------------QGVKEFINDVNTLASLQHPNLCK  240 (473)
Q Consensus       178 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Ei~~l~~l~HpnIv~  240 (473)
                      .+++.||+|+||+||+|...++    +.+++|+.+.....                 .....+.+|...+.++.|.+++.
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g----~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~   78 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKF----GECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPK   78 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTT----EEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred             hhCCEeeeCcceEEEEEECCCC----CEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcce
Confidence            4568999999999999986543    45666665432100                 01233457889999999999998


Q ss_pred             ceeeeecCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCceeecCCCCCceeeCCC
Q 011995          241 LLGFHARDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKD  320 (473)
Q Consensus       241 l~g~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~~~~ivHrDlkp~NILl~~~  320 (473)
                      .+++.      ..++||||+++..+.+          ++......++.|++.+|+|||+++   |+||||||+|||++++
T Consensus        79 ~~~~~------~~~lvme~~~~~~~~~----------l~~~~~~~i~~ql~~~l~~lH~~g---iiHrDiKP~NILv~~~  139 (191)
T d1zara2          79 VYAWE------GNAVLMELIDAKELYR----------VRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSEE  139 (191)
T ss_dssp             EEEEE------TTEEEEECCCCEEGGG----------CCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEETT
T ss_pred             EEEec------CCEEEEEeeccccccc----------hhhHHHHHHHHHHHHHHHHHhhCC---EEEccCChhheeeeCC
Confidence            87653      2379999998765543          223445689999999999999999   9999999999999976


Q ss_pred             CcEEEeccCCCcccCCCCccCcccccccCC------hhhhhcCCCCCcCCchHHHHHHH
Q 011995          321 FSAKLSGYGCAGHIPETDISNSSVAAANLS------VETLERGLLTPKSNVWSFGIVLL  373 (473)
Q Consensus       321 ~~vkl~DFGla~~~~~~~~~~~~~t~~y~a------PE~~~~~~~s~~sDvwSlGvvl~  373 (473)
                       .++|+|||+|.........      .|+.      .+. ....|+.++|+||+.--++
T Consensus       140 -~~~liDFG~a~~~~~~~~~------~~l~rd~~~~~~~-f~r~y~~~~d~~s~~~~~~  190 (191)
T d1zara2         140 -GIWIIDFPQSVEVGEEGWR------EILERDVRNIITY-FSRTYRTEKDINSAIDRIL  190 (191)
T ss_dssp             -EEEECCCTTCEETTSTTHH------HHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHH
T ss_pred             -CEEEEECCCcccCCCCCcH------HHHHHHHHHHHHH-HcCCCCCcccHHHHHHHHh
Confidence             4899999999765432211      1111      111 2345789999999865443

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.49  E-value=2.6e-07  Score=84.77  Aligned_cols=149  Identities=11%  Similarity=0.074  Sum_probs=93.9

Q ss_pred             HHHHHHhcccccCcceeecCCceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCC-CCCcccceeeee
Q 011995          168 DEVAAACHNFFSDRCISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQ-HPNLCKLLGFHA  246 (473)
Q Consensus       168 ~el~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-HpnIv~l~g~~~  246 (473)
                      .|+......|+..+..+.++.+.||+....+..     +.+++... ........+.+|...+..+. +--+.+++.+..
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~~~~~-----~vlk~~~~-~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~   80 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVGENEN-----LYLKMTDS-RYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER   80 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEECSSCE-----EEEEEECG-GGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEeCCCe-----EEEEEcCC-CcccchhhHHHHHHHHHHHhccCCCCcEEEEEe
Confidence            367777778876665544555789998633322     11222211 12223446788999888774 333566776665


Q ss_pred             cCCCCceEEEEEeccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhhhcC-------------------------
Q 011995          247 RDGSDQRMLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEG-------------------------  301 (473)
Q Consensus       247 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH~~~-------------------------  301 (473)
                      .+  +..++||++++|..+.+.....        .....++.+++..+..||+..                         
T Consensus        81 ~~--~~~~lv~~~l~G~~~~~~~~~~--------~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (263)
T d1j7la_          81 HD--GWSNLLMSEADGVLCSEEYEDE--------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDL  150 (263)
T ss_dssp             ET--TEEEEEEECCSSEEHHHHTTTC--------SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTC
T ss_pred             cC--CceEEEEEeccccccccccccc--------ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHh
Confidence            54  6789999999998876554211        112334455555566666421                         


Q ss_pred             -------------------------------CCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          302 -------------------------------PFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       302 -------------------------------~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                                                     .+.++|+|+.+.|||+++++.+-|+||+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         151 ADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             SCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             hhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                           1237999999999999987777799998765

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.93  E-value=1.5e-05  Score=72.05  Aligned_cols=130  Identities=13%  Similarity=0.115  Sum_probs=76.6

Q ss_pred             ceeecCC-ceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCC--CcccceeeeecCCCCceEEEEE
Q 011995          182 CISEGLS-SVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHP--NLCKLLGFHARDGSDQRMLIYE  258 (473)
Q Consensus       182 ~lG~G~~-g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~Hp--nIv~l~g~~~~~~~~~~~lV~E  258 (473)
                      .+..|.. +.||+....+...    +.+|...  .  .....+..|...|+.+...  .+.+++++..++  +..++||+
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~----~vlK~~~--~--~~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~--~~~~~v~~   86 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPV----LFVKTDL--S--GALNELQDEAARLSWLATTGVPCAAVLDVVTEA--GRDWLLLG   86 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCC----EEEEEEC--S--CTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS--SCEEEEEE
T ss_pred             EcCCcccCCeEEEEEeCCCCE----EEEEeCC--c--cCHhHHHHHHHHHHHHHhcCCCCCceeeecccc--cceEEEEE
Confidence            3445554 6799987544332    2233222  1  1234577888888877432  345667666554  67899999


Q ss_pred             eccCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhh----------------------------------------
Q 011995          259 RLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH----------------------------------------  298 (473)
Q Consensus       259 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~yLH----------------------------------------  298 (473)
                      +++|.++.+..        ...   ..++.++...|.-||                                        
T Consensus        87 ~i~G~~~~~~~--------~~~---~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (255)
T d1nd4a_          87 EVPGQDLLSSH--------LAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQG  155 (255)
T ss_dssp             CCSSEETTTSC--------CCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTT
T ss_pred             eeecccccccc--------ccH---HHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhh
Confidence            99886653311        110   111222233333333                                        


Q ss_pred             -----------hc----CCCceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          299 -----------EE----GPFQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       299 -----------~~----~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                                 ..    .++.++|+|+.+.|||++.+..+-|+||+.+.
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         156 LAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             CCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hHHHHHHHHHHHhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence                       21    11247999999999999987777899998764

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.45  E-value=0.00027  Score=68.20  Aligned_cols=29  Identities=14%  Similarity=0.013  Sum_probs=25.0

Q ss_pred             ceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          304 QAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       304 ~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                      .++|+|+.+.|||+++++ ++|+||-.+..
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~~  252 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAFY  252 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCEE
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhccc
Confidence            499999999999999775 89999987653

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.66  E-value=0.0012  Score=63.59  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=46.7

Q ss_pred             cceeecCCceEEEEEECCCCee----eeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCc-ccceeeeecCCCCceEE
Q 011995          181 RCISEGLSSVMYRASFGDDAST----SKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL-CKLLGFHARDGSDQRML  255 (473)
Q Consensus       181 ~~lG~G~~g~Vy~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI-v~l~g~~~~~~~~~~~l  255 (473)
                      ..|+.|-.-.+|+....+....    .+.+.+   |+...........+|..+++.+.-.++ .++++++.+      .+
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vll---Ri~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~------g~  118 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLL---RVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG------GR  118 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEE---EEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT------EE
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEE---EecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC------ce
Confidence            4677788888999987654322    122222   222222334456689999998843344 477776631      58


Q ss_pred             EEEeccCCCh
Q 011995          256 IYERLFHGSL  265 (473)
Q Consensus       256 V~E~~~~gsL  265 (473)
                      |+||++|..|
T Consensus       119 I~efi~g~~l  128 (395)
T d1nw1a_         119 LEEYIPSRPL  128 (395)
T ss_dssp             EECCCCEEEC
T ss_pred             EEEEeccccC
Confidence            9999987544

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.025  Score=52.25  Aligned_cols=163  Identities=11%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             cCCCHHHHHHHhcccc---cCcceeecC-CceEEEEEECCCCeeeeEEEEEEEecCCCChhhHhHHHHHHHHHhCCCCCc
Q 011995          163 RNFPLDEVAAACHNFF---SDRCISEGL-SSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNL  238 (473)
Q Consensus       163 ~~~~~~el~~~~~~f~---~~~~lG~G~-~g~Vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI  238 (473)
                      ..++.+.|..+...+.   ..+++-=++ --.||++...++..    +.+|+.+  ......+++..|...+..|....|
T Consensus         6 ~~L~pd~i~~al~~~g~~~~~~~~~L~s~EN~vy~v~~~dg~~----~VlK~~r--p~~~s~~~i~~E~~~l~~L~~~gi   79 (325)
T d1zyla1           6 QTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRR----FVVKFYR--PERWTADQILEEHQFALQLVNDEV   79 (325)
T ss_dssp             CCCCHHHHHHHHHHTTCCCCSCCEEECCSSSEEEEECCTTCCC----EEEEEEC--TTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCHHHHHHHHHHcCCCCCcCccccccccceeEEEEcCCCCE----EEEEEeC--CCCCCHHHHHHHHHHHHHHHhcCC
Confidence            3456666655554442   112222223 35799997655432    3344443  333456778889998888742222


Q ss_pred             -----ccceeeeecCCCCceEEEEEeccCCChhh----hh----------hc----C--CCCCCCCHH------------
Q 011995          239 -----CKLLGFHARDGSDQRMLIYERLFHGSLDR----LI----------YG----R--SDGPPIDWN------------  281 (473)
Q Consensus       239 -----v~l~g~~~~~~~~~~~lV~E~~~~gsL~~----~l----------~~----~--~~~~~l~~~------------  281 (473)
                           +..-+-.........+.++++++|..+..    .+          +.    .  .....+++.            
T Consensus        80 pv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~  159 (325)
T d1zyla1          80 PVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFED  159 (325)
T ss_dssp             SBCCCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHT
T ss_pred             CCCCceecCCCeeeeeeeEEEEEEeecCCcCCCCCCHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHH
Confidence                 11111000011256788999987643310    00          10    0  011122221            


Q ss_pred             ----------HHHHHHHHHHHHHHHh-hhcCCCceeecCCCCCceeeCCCCcEEEeccCCCcc
Q 011995          282 ----------TRVKIALCAAQGLTFL-HEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCAGH  333 (473)
Q Consensus       282 ----------~~~~i~~~i~~~L~yL-H~~~~~~ivHrDlkp~NILl~~~~~vkl~DFGla~~  333 (473)
                                ....++..+...+.-+ ....+..+||+|+.+.|||++++  ..++||+-++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         160 ATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHhccccCCceeecCCCCcccEEEeCC--ceEEechhccc
Confidence                      1112222222222221 12234568999999999999754  45899997754

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.07  E-value=0.008  Score=55.34  Aligned_cols=30  Identities=13%  Similarity=0.006  Sum_probs=26.6

Q ss_pred             CceeecCCCCCceeeCCCCcEEEeccCCCc
Q 011995          303 FQAMYNEFSTANIQIDKDFSAKLSGYGCAG  332 (473)
Q Consensus       303 ~~ivHrDlkp~NILl~~~~~vkl~DFGla~  332 (473)
                      .++||+|+.++||+++.+...-|+||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            359999999999999998777899999774

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.09  E-value=0.0057  Score=56.20  Aligned_cols=65  Identities=11%  Similarity=0.054  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccCCcccccCccccccccccccCCCChhhhhhhhhhhccchhhhhhhhhhc
Q 011995           29 TPTTLPEPQIPTRSLQSAPPSFRTRVKPIPLNNTTKATNNRTRALSAPSSLDAAEAEQDALASVEFEEQEESKS  102 (473)
Q Consensus        29 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ls~n~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (473)
                      ..+.|..+.+..|.|+|.+|+.+.+++.|+.||   |++|+ ++|.+|+...-     ..+..+.+.+|...|+
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~---Ls~N~-l~g~iP~~~~L-----~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN---VSFNN-LCGEIPQGGNL-----QRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE---CCSSE-EEEECCCSTTG-----GGSCGGGTCSSSEEES
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEE---CcCCc-ccccCCCcccC-----CCCCHHHhCCCccccC
Confidence            356778889999999999999999999999999   99999 99999975211     1455667777766664