Citrus Sinensis ID: 012005

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL
ccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccc
HHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEccccc
mmasdadkpaqkLCLIDVVQRLGVAYHFIKEIDDALekishdpfddkddiYIVSLCFRLLRQHGIKMSCDVFEkfkdddgkfkasLTNDVEGMLSLYEVAHlaipgedilDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRyfldiysrddlhdktlLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGvsyepnfstgriFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWdighidalPEYMKFIFKTLIDFQELVMKYFCEAKwlnegyvpsmdeyksvslrsidfLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDiaghkfeqkrehnpsavecyknqhgvseEEAVKALSLAVANSWKVINEElllnptaiplplLQVIFDLScsadfmygdaqdrlthstMMKDQVELVLRDPIKL
mmasdadkpaqkLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTfaeqirhslrvplrravSRLESRYfldiysrddlhDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFeqkrehnpsaVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRlthstmmkdqvelvlrdpikl
MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCdvfekfkdddgkfkASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL
***********KLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKF**********VECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRL********************
************LCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMV******STFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL
*********AQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL
****DADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL
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MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query473 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.993 0.839 0.644 0.0
Q6Q3H3557 (-)-germacrene D synthase no no 0.978 0.831 0.467 1e-128
Q6Q3H2556 Valencene synthase OS=Vit no no 0.985 0.838 0.458 1e-127
Q39760554 (+)-delta-cadinene syntha N/A no 0.991 0.846 0.436 1e-123
O49853554 (+)-delta-cadinene syntha N/A no 0.991 0.846 0.442 1e-123
Q39761554 (+)-delta-cadinene syntha N/A no 0.991 0.846 0.440 1e-123
E3W207559 Sesquiterpene synthase OS N/A no 0.983 0.831 0.451 1e-122
F6M8H7562 Probable sesquiterpene sy N/A no 0.983 0.827 0.449 1e-122
F6M8H4559 Probable sesquiterpene sy N/A no 0.983 0.831 0.441 1e-121
B5A435559 Sesquiterpene synthase OS N/A no 0.983 0.831 0.441 1e-120
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/501 (64%), Positives = 384/501 (76%), Gaps = 31/501 (6%)

Query: 1   MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
           M+ + A+K AQKL +ID VQRLGVAYHF KEI+D L K+SHD   D DD+Y+VSL FRL 
Sbjct: 63  MITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDL--DSDDLYVVSLRFRLF 120

Query: 61  RQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
           RQ G+K+SCDVF+KFKDD+GKFK SL ND+ GMLSLYE A+LAI GEDILDEAIVFTTTH
Sbjct: 121 RQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTH 180

Query: 121 LKSMVT---NSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAK 177
           LKS+++   +S  NS  AEQIRHSL++PLR+A +RLE+RYFLDIYSRDDLHD+TLL FAK
Sbjct: 181 LKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240

Query: 178 LDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIF 237
           LDFNILQA HQKEAS +TRWW DL F KK+PY R+R++E Y WML+GVSYEPN + GRIF
Sbjct: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIF 300

Query: 238 LSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID----- 292
            SK++C+ T +DDTFDAYGTFEEL +FTEAV RWDIG ID LPEYMKFI K L+D     
Sbjct: 301 ASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYREA 360

Query: 293 -------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAV 333
                               QEL++ YF EAKWL +GYVP+ DEYKSV+LRSI    +AV
Sbjct: 361 EEELAKEGRSYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRTLAV 420

Query: 334 ASFIFMGD-IASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKN 392
           ASF+ +GD IA+++ FE  + N   + A ETI R +DDIAG+KFEQKR HNPSAVECYKN
Sbjct: 421 ASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVECYKN 480

Query: 393 QHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDR 452
           QHGVSEEEAVK L L VANSWK INEE LLNPT +PLP+LQ +   + S  F+Y D  DR
Sbjct: 481 QHGVSEEEAVKELLLEVANSWKDINEE-LLNPTTVPLPMLQRLLYFARSGHFIYDDGHDR 539

Query: 453 LTHSTMMKDQVELVLRDPIKL 473
            THS MMK QV L+L +P+ +
Sbjct: 540 YTHSLMMKRQVALLLTEPLAI 560
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query473
313585892551 Tps2-1 [Clausena lansium] 1.0 0.858 0.845 0.0
75250254560 RecName: Full=(E)-beta-farnesene synthas 0.993 0.839 0.644 0.0
300079902560 (E)-beta-farnesene synthase [Citrus reti 0.989 0.835 0.647 0.0
261343328548 terpene synthase 1 [Citrus sinensis] 0.989 0.854 0.524 1e-147
33316389548 valencene synthase [Citrus sinensis] 0.989 0.854 0.524 1e-146
19880625548 putative terpene synthase [Citrus x para 0.989 0.854 0.522 1e-145
9864189555 terpene synthase [Citrus junos] 0.993 0.846 0.535 1e-143
255563621558 (+)-delta-cadinene synthase isozyme A, p 0.972 0.824 0.490 1e-136
313755406555 (E)-beta-caryophyllene synthase [Vitis v 0.983 0.837 0.478 1e-130
313755402555 (E)-beta-caryophyllene synthase [Vitis v 0.983 0.837 0.476 1e-129
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/497 (84%), Positives = 448/497 (90%), Gaps = 24/497 (4%)

Query: 1   MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
           MM SDA+KPAQ+L LID VQRLGVAYHF KEIDDALEKI HDPFDDKDD+YIVSLCFRLL
Sbjct: 53  MMVSDANKPAQRLRLIDTVQRLGVAYHFEKEIDDALEKIGHDPFDDKDDLYIVSLCFRLL 112

Query: 61  RQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
           RQHGIK+SCDVFEKFKDDDGKFKASL NDV+GMLSLYE AHLAI GEDILDEAIVFTTTH
Sbjct: 113 RQHGIKISCDVFEKFKDDDGKFKASLMNDVQGMLSLYEAAHLAIHGEDILDEAIVFTTTH 172

Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDF 180
           LKS V+NS VNSTFAEQIRHSLRVPLR+AV RLESRYFLDIYSRDDLHDKTLLNFAKLDF
Sbjct: 173 LKSTVSNSPVNSTFAEQIRHSLRVPLRKAVPRLESRYFLDIYSRDDLHDKTLLNFAKLDF 232

Query: 181 NILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSK 240
           NILQAMHQKEASE+TRWWRD DFLKKLPYIR+RVVELYFW+LVGVSY+P FSTGRIFLSK
Sbjct: 233 NILQAMHQKEASEMTRWWRDFDFLKKLPYIRDRVVELYFWILVGVSYQPKFSTGRIFLSK 292

Query: 241 IICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID-------- 292
           IICLETLVDDTFDAYGTF+EL IFTEAV RWD+GH DALPEYMKFIFKTLID        
Sbjct: 293 IICLETLVDDTFDAYGTFDELAIFTEAVTRWDLGHRDALPEYMKFIFKTLIDVYSEAEQE 352

Query: 293 ----------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF 336
                           FQELVMKYFCEAKWLN+GYVPS+D+YKSVSLRSI FLPIAVASF
Sbjct: 353 LAKEGRSYSIHYAIRSFQELVMKYFCEAKWLNKGYVPSLDDYKSVSLRSIGFLPIAVASF 412

Query: 337 IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGV 396
           +FMGDIA++E+FEWEM+NP IIIAAETI RFLDDIAGH+FEQKREH+PSA+ECYKNQHGV
Sbjct: 413 VFMGDIATKEVFEWEMNNPKIIIAAETIFRFLDDIAGHRFEQKREHSPSAIECYKNQHGV 472

Query: 397 SEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS 456
           SEEEAVKALSL VANSWK INEELLLNP AIPLPLLQVI DLS SADFMYG+AQDR THS
Sbjct: 473 SEEEAVKALSLEVANSWKDINEELLLNPMAIPLPLLQVILDLSRSADFMYGNAQDRFTHS 532

Query: 457 TMMKDQVELVLRDPIKL 473
           TMMKDQV+LVL+DP+KL
Sbjct: 533 TMMKDQVDLVLKDPVKL 549

Source: Clausena lansium

Species: Clausena lansium

Genus: Clausena

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|313755406|gb|ADR74194.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755402|gb|ADR74192.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query473
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.710 0.601 0.422 5e-108
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.585 0.491 0.464 1.4e-101
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.630 0.521 0.436 8.6e-100
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.589 0.493 0.439 6e-97
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.608 0.523 0.445 1.8e-95
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.615 0.524 0.426 1.1e-93
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.610 0.520 0.419 2.4e-87
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.602 0.514 0.404 8.1e-87
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.610 0.528 0.369 1.5e-85
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 0.604 0.510 0.4 3.6e-80
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 725 (260.3 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
 Identities = 155/367 (42%), Positives = 229/367 (62%)

Query:     2 MASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKI------SHDPFDDKDDIYIVSL 55
             +A+  DKP Q+L +ID  QRLG+AYHF  EI+++LE I       ++ F    D+Y V+L
Sbjct:    62 LAATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYSVAL 121

Query:    56 CFRLLRQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIV 115
              FRLLRQ G K+SC               SL  D +G+L LYE  HL++ GE++LD+A+ 
Sbjct:   122 WFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALE 181

Query:   116 FTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNF 175
             F  T L+S+V +  +N   AEQ+RH+L  PLR+ + RLE+ YF  IY   D H+K LL  
Sbjct:   182 FAKTRLESIVNH--LNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKL 239

Query:   176 AKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGR 235
             AKLDFN+LQ++H+KE S++ RWW+ LDF  K P+ R+R+VE YFW+L GV +EP +S  R
Sbjct:   240 AKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVL-GVYFEPQYSLAR 298

Query:   236 IFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID-FQ 294
               + K+  + + +DD +DAYGT +EL++FT+A+ RWD+G +D LPEYMK  +K+++D + 
Sbjct:   299 KIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYN 358

Query:   295 ELV-----------MKYFCEA-KWLNEGYVPSMDEYKSVSLRSI----DFLPIAVAS--F 336
             E+            M Y  E  K L EGY   MDE K    + +    +++P+A+ +  +
Sbjct:   359 EIEEEMDNQGSLFRMHYAKEVMKKLVEGY---MDEAKWCHEKYVPTFEEYMPVALVTSGY 415

Query:   337 IFMGDIA 343
              F+  I+
Sbjct:   416 TFLTTIS 422
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.64470.99360.8392N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.38010.98300.8500yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query473
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-90
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 4e-88
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-66
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-35
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-25
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 6e-19
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 4e-05
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  583 bits (1504), Expect = 0.0
 Identities = 224/501 (44%), Positives = 322/501 (64%), Gaps = 33/501 (6%)

Query: 1   MMASD-ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISH----DPFDDKDDIYIVSL 55
           +  S+      ++L LID +QRLG++YHF  EI + L+ I          ++DD+Y  +L
Sbjct: 44  LEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTAL 103

Query: 56  CFRLLRQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIV 115
            FRLLRQHG  +S DVF+KFKD+DGKFK SLT DV+GMLSLYE +HL+ PGEDILDEA+ 
Sbjct: 104 GFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALS 163

Query: 116 FTTTHLKSMV-TNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLN 174
           FTT HL+  + +N  ++   + +I ++L +PL  ++ RLE+R++++ Y ++D H++TLL 
Sbjct: 164 FTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLE 223

Query: 175 FAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTG 234
            AKLDFNILQA+HQ+E   ++RWW+DLD   KLP+ R+R+VE YFW   G  +EP +S  
Sbjct: 224 LAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSLA 282

Query: 235 RIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID-- 292
           RI L+K I L T++DDT+D YGT EEL++FTEAV RWDI  ID LPEYMK +FK L++  
Sbjct: 283 RIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTV 342

Query: 293 ----------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLP 330
                                 +++LV  Y  EAKW +EGYVP+ +EY   +L SI   P
Sbjct: 343 NEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGP 402

Query: 331 IAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECY 390
           + + SF+ MGDI + E FEW  S P ++ A+ TI R ++DIA ++ E KR    S++ECY
Sbjct: 403 LLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECY 462

Query: 391 KNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQ 450
             ++GVSEEEA + +   + ++WK +NEE L   + +P P+ Q   +L+   D  Y +  
Sbjct: 463 MKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKE-G 521

Query: 451 DRLTHST-MMKDQVELVLRDP 470
           D  TH    +KD +  +L +P
Sbjct: 522 DGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 473
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.81
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.66
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.51
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 90.66
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 89.25
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 85.66
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 82.8
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 80.99
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=8.4e-142  Score=1147.34  Aligned_cols=460  Identities=48%  Similarity=0.878  Sum_probs=447.6

Q ss_pred             CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCC-----CCCChHHHHHHHHHHHhcCcccchhhhcccccccc
Q 012005            6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFD-----DKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDG   80 (473)
Q Consensus         6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~-----~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~~g   80 (473)
                      +.|++++|++||+||||||+|||++||+++|++||++ |.     ...||++|||+|||||||||+||||||++|+|++|
T Consensus        50 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g  128 (542)
T cd00684          50 PVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRY-WTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDG  128 (542)
T ss_pred             CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHh-hcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCC
Confidence            5789999999999999999999999999999999986 42     24699999999999999999999999999999999


Q ss_pred             cccccccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcC--CCCCchHHHHHHhcCCCcccccchhhHHHH
Q 012005           81 KFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNS--QVNSTFAEQIRHSLRVPLRRAVSRLESRYF  158 (473)
Q Consensus        81 ~f~~~~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rlear~y  158 (473)
                      +|+|++.+||+||||||||||+++|||+|||||++||++||+++++++  + +++|+++|++||+.|+|+++||+|||+|
T Consensus       129 ~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~y  207 (542)
T cd00684         129 KFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII-DPDLSGEIEYALEIPLHASLPRLEARWY  207 (542)
T ss_pred             CcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHccCchhcCCchHHHHHH
Confidence            999999999999999999999999999999999999999999999842  5 7889999999999999999999999999


Q ss_pred             HHHhcCCCCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHH
Q 012005          159 LDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFL  238 (473)
Q Consensus       159 i~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~  238 (473)
                      |++|++++.+|++||||||+|||+||++||+||+++++||+++||.+++||+|+|+++||||+ +|++|||++|.+|+++
T Consensus       208 i~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~-~a~~feP~~s~~Rl~~  286 (542)
T cd00684         208 IEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSLARIAL  286 (542)
T ss_pred             HHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHH-HhcccCccchHHHHHH
Confidence            999999999999999999999999999999999999999999999888899999999999999 9999999999999999


Q ss_pred             HhHhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HH
Q 012005          239 SKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQ  294 (473)
Q Consensus       239 ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~  294 (473)
                      ||+++|+|++||+||.|||.+|++.||+||+|||+++++.+|+|||++|.++++                        |+
T Consensus       287 aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~  366 (542)
T cd00684         287 AKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWK  366 (542)
T ss_pred             HHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999996                        99


Q ss_pred             HHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccch
Q 012005          295 ELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGH  374 (473)
Q Consensus       295 ~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~  374 (473)
                      +++++|++||+|+++||+||++|||++|++|+|+++++++++++||+.+|+++++|+...|+|+++++.++||+|||+|+
T Consensus       367 ~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~  446 (542)
T cd00684         367 DLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATY  446 (542)
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhh
Confidence            99999999999999999999999999999999999999999999999999999999777799999999999999999999


Q ss_pred             hhhhccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCHhHHHHHHHHhhhhhhhcCcCCCCC
Q 012005          375 KFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNP-TAIPLPLLQVIFDLSCSADFMYGDAQDRL  453 (473)
Q Consensus       375 ~kE~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~-~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~  453 (473)
                      ++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++||++|++ ++++ +++|++|++.++|++|+++++|+++ |||
T Consensus       447 ~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e-~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~  524 (542)
T cd00684         447 EDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEE-FLKPSSDVPRPIKQRFLNLARVIDVFYKEG-DGF  524 (542)
T ss_pred             HHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence            999999999999999999999999999999999999999999999 9987 7899999999999999999999999 999


Q ss_pred             CCc-hhHHHHHHHHhcCc
Q 012005          454 THS-TMMKDQVELVLRDP  470 (473)
Q Consensus       454 t~~-~~~k~~i~sll~~P  470 (473)
                      |.| +.||++|++||++|
T Consensus       525 t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         525 THPEGEIKDHITSLLFEP  542 (542)
T ss_pred             CCccHHHHHHHHHHhcCC
Confidence            999 78999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query473
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-116
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 8e-92
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 8e-92
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-91
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-91
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-91
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-91
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 2e-91
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 3e-90
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 6e-90
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-71
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 5e-65
2j5c_A569 Rational Conversion Of Substrate And Product Specif 6e-64
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-63
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-60
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-51
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 1e-50
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 6e-15
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/497 (42%), Positives = 306/497 (61%), Gaps = 28/497 (5%)
Query: 1   MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
           M+ +      QKL  ID VQRLGV+YHF KEI+D LE I H+  D ++D+Y  S+ FRLL
Sbjct: 62  MIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121
Query: 61  RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
           R+HG  +SC              +S+T+DV G+L LY+ ++L + GEDILDEAI FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDF 180
           L   V  + ++   +E++ H+L+  +RR + R+E+R++L +Y   + H+K LL FAK+DF
Sbjct: 182 LSLAV--ASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDF 239
Query: 181 NILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSK 240
           N+LQ +H+KE SEI RWW+DLDF +KLPY R+RVVE YFW + GV +EP +S GR  L+K
Sbjct: 240 NMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTK 298
Query: 241 IICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQE----- 295
           +I + ++VDDT+D+Y T+EEL  +T A+ RWDI  ID +PEYMK  +K L+D  E     
Sbjct: 299 VIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQL 358
Query: 296 -------------------LVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF 336
                              L   Y  EAKW  + Y PS +E+K+ +L +  +  +A+ SF
Sbjct: 359 VAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF 418
Query: 337 IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGV 396
           + MGDI + E F+W  S+P II A+  I RF+DD+A HKF+ +RE + SA+ECY  ++GV
Sbjct: 419 VGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGV 478
Query: 397 SEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS 456
           + +EA    +  V ++WK +N+E  L PT +P  +L    +L+   D +Y +        
Sbjct: 479 TAQEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVG 537
Query: 457 TMMKDQVELVLRDPIKL 473
              K  +  +L +PI L
Sbjct: 538 KAAKGGITSLLIEPIAL 554
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query473
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-153
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-151
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-148
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-148
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-145
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-142
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-130
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-130
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-125
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-82
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-23
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 1e-22
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-12
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  446 bits (1149), Expect = e-153
 Identities = 220/498 (44%), Positives = 318/498 (63%), Gaps = 30/498 (6%)

Query: 1   MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
           M+ +      QKL  ID VQRLGV+YHF KEI+D LE I H+  D ++D+Y  S+ FRLL
Sbjct: 62  MIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121

Query: 61  RQHGIKMSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
           R+HG  +SCDVF KFKD+ G FK+S+T+DV G+L LY+ ++L + GEDILDEAI FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181

Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDF 180
           L   V +   +   +E++ H+L+  +RR + R+E+R++L +Y   + H+K LL FAK+DF
Sbjct: 182 LSLAVASL--DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDF 239

Query: 181 NILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSK 240
           N+LQ +H+KE SEI RWW+DLDF +KLPY R+RVVE YFW+  GV +EP +S GR  L+K
Sbjct: 240 NMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTK 298

Query: 241 IICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------- 293
           +I + ++VDDT+D+Y T+EEL  +T A+ RWDI  ID +PEYMK  +K L+D        
Sbjct: 299 VIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQL 358

Query: 294 -----------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF 336
                              L   Y  EAKW  + Y PS +E+K+ +L +  +  +A+ SF
Sbjct: 359 VAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF 418

Query: 337 IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGV 396
           + MGDI + E F+W  S+P II A+  I RF+DD+A HKF+ +RE + SA+ECY  ++GV
Sbjct: 419 VGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGV 478

Query: 397 SEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS 456
           + +EA    +  V ++WK +N+E  L PT +P  +L    +L+   D +Y +  D  T+ 
Sbjct: 479 TAQEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYV 536

Query: 457 -TMMKDQVELVLRDPIKL 473
               K  +  +L +PI L
Sbjct: 537 GKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query473
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.74
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 86.43
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 82.95
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-152  Score=1218.11  Aligned_cols=463  Identities=48%  Similarity=0.867  Sum_probs=440.2

Q ss_pred             CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcCcccchhhhccccccccccccc
Q 012005            6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKAS   85 (473)
Q Consensus         6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~~g~f~~~   85 (473)
                      +.|++++|+|||+||||||+|||++||+++|++||+++..+..||++|||+|||||||||+||||||++|+|++|+|+++
T Consensus        67 ~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~  146 (554)
T 3g4d_A           67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSS  146 (554)
T ss_dssp             CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHH
T ss_pred             ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccc
Confidence            56899999999999999999999999999999999752222369999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCcccccchhhHHHHHHHhcCC
Q 012005           86 LTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRD  165 (473)
Q Consensus        86 ~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~  165 (473)
                      +.+||+||||||||||+++|||+|||||+.||++||++.++ ++ +++|+++|+|||+.|||+++||+|||+||++|+++
T Consensus       147 l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~  224 (554)
T 3g4d_A          147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVA-SL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI  224 (554)
T ss_dssp             HHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHST-TC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS
T ss_pred             cccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh-cc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC
Confidence            99999999999999999999999999999999999999987 56 78899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHHHhHhhhh
Q 012005          166 DLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLE  245 (473)
Q Consensus       166 ~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l~  245 (473)
                      +.+|+.||||||||||+||++||+||++++|||+++||.+++||||||++|||||+ +|++|||+||.+|+++||+++++
T Consensus       225 ~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l~  303 (554)
T 3g4d_A          225 ESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTKVIAMA  303 (554)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHH-HHhhCCccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999889999999999999999 99999999999999999999999


Q ss_pred             hhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HHHHHHHHH
Q 012005          246 TLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQELVMKYF  301 (473)
Q Consensus       246 ~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~~~~~a~l  301 (473)
                      +++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++                        |++++++|+
T Consensus       304 tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl  383 (554)
T 3g4d_A          304 SIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYL  383 (554)
T ss_dssp             HHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999                        999999999


Q ss_pred             HHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccC
Q 012005          302 CEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKRE  381 (473)
Q Consensus       302 ~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G  381 (473)
                      +||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|
T Consensus       384 ~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG  463 (554)
T 3g4d_A          384 VEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRRE  463 (554)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCCCCc-hhHH
Q 012005          382 HNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS-TMMK  460 (473)
Q Consensus       382 ~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~~~k  460 (473)
                      +++|+|+|||+|+|+|+|+|+++++++|+++||+||++ +++++++|++|+++++|+||++++||+++ ||||.| +.||
T Consensus       464 ~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e-~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k  541 (554)
T 3g4d_A          464 DDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAK  541 (554)
T ss_dssp             -CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-HSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHH
T ss_pred             CccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHH
Confidence            99999999999999999999999999999999999999 99988999999999999999999999999 999999 7899


Q ss_pred             HHHHHHhcCccCC
Q 012005          461 DQVELVLRDPIKL  473 (473)
Q Consensus       461 ~~i~sll~~Pi~i  473 (473)
                      ++|++||++|||+
T Consensus       542 ~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          542 GGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHTCCCCC
T ss_pred             HHHHHHhcCCCCC
Confidence            9999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 473
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-108
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-107
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 8e-57
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-55
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-38
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-24
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  321 bits (825), Expect = e-108
 Identities = 124/330 (37%), Positives = 186/330 (56%), Gaps = 28/330 (8%)

Query: 169 DKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYE 228
           +  LL FAKLDFN+LQ +H++E ++++RWW+DLDF+  LPY R+RVVE YFW  +GV +E
Sbjct: 2   NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFE 60

Query: 229 PNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFK 288
           P +S  R+ L K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI  ID LP+YMK  +K
Sbjct: 61  PQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYK 120

Query: 289 TLIDF------------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLR 324
            ++D                         +E+V  Y  E+ W  EGY P + EY S +L 
Sbjct: 121 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 180

Query: 325 SIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNP 384
           +  +  +A  S++ M    + + FEW   NP I+ A+  I R +DD A ++ E+ R    
Sbjct: 181 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 239

Query: 385 SAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADF 444
           + +EC    +G+S +EA+         +WK INE  LL PT +    L  I +L+   + 
Sbjct: 240 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEV 298

Query: 445 MYGDAQDRLTHS-TMMKDQVELVLRDPIKL 473
            Y    D  TH   ++K  +  +L D IK+
Sbjct: 299 TYIHNLDGYTHPEKVLKPHIINLLVDSIKI 328
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query473
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.39
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.7e-94  Score=726.93  Aligned_cols=303  Identities=41%  Similarity=0.784  Sum_probs=288.2

Q ss_pred             CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHHHhHhhhhhh
Q 012005          168 HDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETL  247 (473)
Q Consensus       168 ~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l~~~  247 (473)
                      +|++||||||||||+||++||+||++++|||+++|+.+++||||||++|||||+ +|++|||+||.+|+++||.++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~-~~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHH-HHhhcChhhHHHHHHHHHHHHHHHh
Confidence            599999999999999999999999999999999999889999999999999999 9999999999999999999999999


Q ss_pred             hhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HHHHHHHHHHH
Q 012005          248 VDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQELVMKYFCE  303 (473)
Q Consensus       248 ~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~~~~~a~l~E  303 (473)
                      +||+||.|||.||++.||+||+|||.++++.||+|||++|+++++                        |++++++|++|
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~E  159 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVE  159 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998                        99999999999


Q ss_pred             HHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccCCC
Q 012005          304 AKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHN  383 (473)
Q Consensus       304 A~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~  383 (473)
                      |+|+++||+||+||||++|.+|+|+++++++++++||. ++++.++|++++|+|+++++.|+||+|||+|+++|+++|++
T Consensus       160 A~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~  238 (328)
T d5easa2         160 STWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQI  238 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCC
Confidence            99999999999999999999999999999999999997 57788999999999999999999999999999999999999


Q ss_pred             cchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCCCCc-hhHHHH
Q 012005          384 PSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS-TMMKDQ  462 (473)
Q Consensus       384 ~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~~~k~~  462 (473)
                      +|+|.|||+|+|+|+|||+++++++|+++||+||++ +++++++|++|+++++|+||+++++|++|.||||+| +.+|++
T Consensus       239 ~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e-~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~  317 (328)
T d5easa2         239 ATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPH  317 (328)
T ss_dssp             TCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-TSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHH
Confidence            999999999999999999999999999999999999 999999999999999999999999999766999999 679999


Q ss_pred             HHHHhcCccCC
Q 012005          463 VELVLRDPIKL  473 (473)
Q Consensus       463 i~sll~~Pi~i  473 (473)
                      |++||++||||
T Consensus       318 i~~ll~epi~~  328 (328)
T d5easa2         318 IINLLVDSIKI  328 (328)
T ss_dssp             HHHHHTCCCCC
T ss_pred             HHHHhccCCcC
Confidence            99999999997
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure